CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 210

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S210I210TnonsynaTtaCt34353435122190-22192
S210I210deldelATT---27962796122190-22192
S210I210VnonsynAttGtt222222122190-22192
S210I210IsynatTatC1661170.70481922190-22192
S210I210IsynatTatA166490.29518122190-22192
S210I210FnonsynAttTtt7777122190-22192
S210I210LnonsynAttCtt25240.9622190-22192
S210I210LnonsynAtTCtA2510.0422190-22192
S210I210del1delaTta-t24160.66666722190-22192
S210I210del1delATt-Nt2450.20833322190-22192
S210I210del1delaTTa-N2420.083333322190-22192
S210I210del1delAtt-tt2410.041666722190-22192
S210I210NnonsynaTtaAt14130.92857122190-22192
S210I210NnonsynaTTaAC1410.071428622190-22192
S210I210SnonsynaTtaGt11100.90909122190-22192
S210I210SnonsynaTTaGC1110.090909122190-22192
S210I210MnonsynatTatG1010122190-22192
S210I210del2delATt--t420.522190-22192
S210I210del2delaTTa--420.522190-22192
S210I210AnonsynATtGCt11122190-22192
S210I210GnonsynATTGGA11122190-22192

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S210I210TaTtaCt34353435All0.000657
S210I210delATT---27962796All0.000535
S210I210TaTtaCt15581558B.1.619.10.999359
S210I210TaTtaCt11261126B.1.6190.980836
S210I210delATT---598598AY.130.096265
S210I210delATT---421421AY.290.006641
S210I210delATT---339339B.1.360.04946
S210I210delATT---305305B.1.36.90.980707
S210I210TaTtaCt242242AY.40.000377
S210I210VAttGtt222222All0.000042
S210I210TaTtaCt168168B.1.1.70.00015
S210I210delATT---168168B.1.36.70.672
S210I210IatTatC117166All0.000022
S210I210IatTatA49166All0.000009
S210I210delATT---125125B.1.36.330.94697
S210I210delATT---105105B.1.617.20.000395
S210I210delATT---9999B.1.1.70.000089
S210I210delATT---8181AY.1020.002148
S210I210FAttTtt7777All0.000015
S210I210delATT---7676AY.40.000118
S210I210TaTtaCt5454B.10.000495
S210I210TaTtaCt5050AY.690.009334
S210I210TaTtaCt4444AY.440.000268
S210I210delATT---3535AY.430.000155
S210I210VAttGtt3030N.100.882353
S210I210VAttGtt2929AY.260.000821
S210I210delATT---2727AY.30.000269
S210I210LAttCtt2425All0.000005
S210I210LAtTCtA125All0
S210I210delATT---2525B.10.000229
S210I210del1aTta-t1624All0.000003
S210I210del1ATt-Nt524All0.000001
S210I210del1aTTa-N224All0
S210I210del1Att-tt124All0
S210I210IatTatA1824B.1.1.70.000016
S210I210IatTatC624B.1.1.70.000005
S210I210IatTatC2323AY.290.000363
S210I210delATT---2323AY.680.006296
S210I210TaTtaCt2323B.1.617.20.000087
S210I210delATT---2020AY.250.00012
S210I210FAttTtt2020AY.440.000122
S210I210TaTtaCt2020B.1.5760.018132
S210I210delATT---1818AY.1030.000112
S210I210VAttGtt1717B.1.110.30.012213
S210I210TaTtaCt1717B.1.1770.000224
S210I210delATT---1515AY.1200.000558
S210I210VAttGtt1515AY.730.00998
S210I210IatTatC1515B.1.2340.001979
S210I210NaTtaAt1314All0.000002
S210I210NaTTaAC114All0
S210I210delATT---1414B.1.1770.000184
S210I210LAttCtt1414B.1.617.20.000053
S210I210VAttGtt1414P.1.160.005238
S210I210delATT---1313AY.390.000321
S210I210VAttGtt1313AY.40.00002
S210I210IatTatC913AY.40.000014
S210I210IatTatA413AY.40.000006
S210I210delATT---1313AY.440.000079
S210I210delATT---1313AY.50.000268
S210I210VAttGtt1313B.1.2980.027484
S210I210VAttGtt1313B.1.617.20.000049
S210I210del1aTta-t1012AY.130.00161
S210I210del1ATt-Nt212AY.130.000322
S210I210VAttGtt1212B.1.1.70.000011
S210I210IatTatC1112B.1.1600.000343
S210I210IatTatA112B.1.1600.000031
S210I210SaTtaGt1011All0.000002
S210I210SaTTaGC111All0
S210I210delATT---1111B.1.2430.000765
S210I210MatTatG1010All0.000002
S210I210delATT---1010AY.260.000283
S210I210TaTtaCt99AY.1020.000239
S210I210TaTtaCt99AY.430.00004
S210I210TaTtaCt99B.1.20.000079
S210I210delATT---99B.1.6380.473684
S210I210TaTtaCt99Q.30.001305
S210I210FAttTtt88AY.40.000012
S210I210delATT---88AY.4.50.00086
S210I210delATT---88AY.540.000763
S210I210TaTtaCt88B.1.3510.000238
S210I210TaTtaCt88B.1.36.390.017738
S210I210delATT---88P.1.150.001859
S210I210FAttTtt88P.1.70.002554
S210I210delATT---77AY.1190.000247
S210I210VAttGtt77AY.250.000042
S210I210delATT---77AY.29.10.001544
S210I210del1aTta-t47AY.30.00004
S210I210del1ATt-Nt37AY.30.00003
S210I210delATT---77AY.670.00325
S210I210delATT---77B.1.10.000127
S210I210FAttTtt77B.1.1.70.000006
S210I210delATT---77B.1.214.20.004197
S210I210delATT---77B.1.36.350.018229
S210I210delATT---77P.10.00011
S210I210MatTatG66A.2.50.002994
S210I210TaTtaCt66AY.1030.000037
S210I210VAttGtt66B.1.5250.000679
S210I210delATT---66C.370.000696
S210I210VAttGtt66P.10.000095
S210I210delATT---55A.300.714286
S210I210TaTtaCt55AY.1000.00023
S210I210delATT---55AY.1170.000423
S210I210IatTatA55AY.460.00052
S210I210TaTtaCt55B.1.10.000091
S210I210VAttGtt55B.1.10.000091
S210I210IatTatC45B.1.20.000035
S210I210IatTatA15B.1.20.000009
S210I210TaTtaCt55B.1.4290.000118
S210I210IatTatC35B.1.617.20.000011
S210I210IatTatA25B.1.617.20.000008
S210I210del2ATt--t24All0
S210I210del2aTTa--24All0
S210I210IatTatC44AY.1030.000025
S210I210delATT---44AY.1160.001147
S210I210FAttTtt44AY.1200.000149
S210I210VAttGtt44AY.1200.000149
S210I210delATT---44AY.200.000155
S210I210VAttGtt44AY.30.00004
S210I210IatTatC34AY.30.00003
S210I210IatTatA14AY.30.00001
S210I210delATT---44AY.39.10.000158
S210I210delATT---44AY.420.000161
S210I210delATT---44AY.9.20.000147
S210I210IatTatC44B.10.000037
S210I210IatTatC44B.1.10.000073
S210I210LAttCtt44B.1.1.70.000004
S210I210delATT---44B.1.4680.022857
S210I210VAttGtt33AY.1000.000138
S210I210IatTatC23AY.1020.000053
S210I210IatTatA13AY.1020.000027
S210I210IatTatA33AY.260.000085
S210I210FAttTtt33AY.3.10.000256
S210I210TaTtaCt33AY.390.000074
S210I210FAttTtt33AY.4.20.000065
S210I210TaTtaCt33AY.4.20.000065
S210I210TaTtaCt33AY.770.003382
S210I210delATT---33AY.980.000237
S210I210TaTtaCt33B0.000383
S210I210delATT---33B.1.1.2140.000166
S210I210delATT---33B.1.1600.000094
S210I210delATT---33B.1.3510.000089
S210I210IatTatC33B.1.351.20.000908
S210I210delATT---33B.1.36.220.003623
S210I210TaTtaCt33B.1.5230.007353
S210I210delATT---33B.1.5960.000261
S210I210FAttTtt33B.1.617.20.000011
S210I210delATT---33B.1.6280.001057
S210I210TaTtaCt33P.10.000047
S210I210delATT---220.111111
S210I210NaTtaAt220.111111
S210I210MatTatG22A.2.5.10.009615
S210I210delATT---22AY.1000.000092
S210I210IatTatA12AY.1000.000046
S210I210IatTatC12AY.1000.000046
S210I210SaTtaGt22AY.1030.000012
S210I210VAttGtt22AY.1030.000012
S210I210delATT---22AY.1130.000285
S210I210IatTatA22AY.1200.000074
S210I210delATT---22AY.140.000176
S210I210FAttTtt22AY.200.000078
S210I210TaTtaCt22AY.230.000139
S210I210TaTtaCt22AY.250.000012
S210I210VAttGtt22AY.320.001065
S210I210delATT---22AY.350.000466
S210I210IatTatC22AY.360.000296
S210I210delATT---22AY.4.20.000043
S210I210IatTatA12AY.4.20.000022
S210I210IatTatC12AY.4.20.000022
S210I210NaTtaAt22AY.430.000009
S210I210VAttGtt22AY.430.000009
S210I210IatTatC12AY.430.000004
S210I210IatTatA12AY.430.000004
S210I210VAttGtt22AY.440.000012
S210I210delATT---22AY.450.000243
S210I210delATT---22AY.460.000208
S210I210delATT---22AY.46.60.000144
S210I210delATT---22AY.470.000062
S210I210delATT---22AY.60.000082
S210I210FAttTtt22AY.690.000373
S210I210delATT---22AY.750.000112
S210I210delATT---22AY.840.000875
S210I210IatTatC22AY.90.000135
S210I210delATT---22AY.99.20.000184
S210I210delATT---22B0.000256
S210I210NaTtaAt12B0.000128
S210I210NaTTaAC12B0.000128
S210I210delATT---22B.1.1.5190.000079
S210I210TaTtaCt22B.1.177.170.001642
S210I210NaTtaAt22B.1.2210.000142
S210I210delATT---22B.1.2600.006689
S210I210TaTtaCt22B.1.36.70.008
S210I210del1aTta-t12B.1.36.70.004
S210I210del1aTTa-N12B.1.36.70.004
S210I210FAttTtt22B.1.3890.002004
S210I210TaTtaCt22B.1.5960.000174
S210I210delATT---22B.1.6370.000146
S210I210TaTtaCt22D.20.00015
S210I210VAttGtt22P.1.120.000968
S210I210TaTtaCt22P.1.120.000968
S210I210VAttGtt22P.20.000373
S210I210TaTtaCt11A.10.000282
S210I210FAttTtt11A.20.000662
S210I210SaTtaGt11A.20.000662
S210I210TaTtaCt11A.2.50.000499
S210I210delATT---11A.2.50.000499
S210I210MatTatG11A.2.5.20.001572
S210I210GATTGGA11All0
S210I210AATtGCt11All0
S210I210VAttGtt11AY.10.000396
S210I210FAttTtt11AY.1020.000027
S210I210TaTtaCt11AY.1070.000466
S210I210IatTatC11AY.1110.000183
S210I210delATT---11AY.1140.000231
S210I210LAttCtt11AY.1140.000231
S210I210VAttGtt11AY.1140.000231
S210I210TaTtaCt11AY.1170.000085
S210I210delATT---11AY.1180.000063
S210I210IatTatA11AY.1190.000035
S210I210TaTtaCt11AY.1210.000135
S210I210NaTtaAt11AY.130.000161
S210I210NaTtaAt11AY.160.00038
S210I210delATT---11AY.160.00038
S210I210delATT---11AY.240.000431
S210I210FAttTtt11AY.250.000006
S210I210TaTtaCt11AY.260.000028
S210I210IatTatA11AY.270.000065
S210I210TaTtaCt11AY.290.000016
S210I210TaTtaCt11AY.30.00001
S210I210delATT---11AY.300.000396
S210I210TaTtaCt11AY.300.000396
S210I210TaTtaCt11AY.320.000532
S210I210delATT---11AY.330.000067
S210I210IatTatC11AY.330.000067
S210I210delATT---11AY.34.10.00051
S210I210FAttTtt11AY.360.000148
S210I210del2aTTa--11AY.40.000002
S210I210VAttGtt11AY.4.2.10.000149
S210I210FAttTtt11AY.420.00004
S210I210SaTTaGC11AY.420.00004
S210I210IatTatC11AY.420.00004
S210I210LAttCtt11AY.430.000004
S210I210del2ATt--t11AY.430.000004
S210I210IatTatA11AY.440.000006
S210I210AATtGCt11AY.440.000006
S210I210IatTatC11AY.450.000122
S210I210TaTtaCt11AY.460.000104
S210I210LAtTCtA11AY.460.000104
S210I210delATT---11AY.46.20.000635
S210I210VAttGtt11AY.46.40.000165
S210I210TaTtaCt11AY.46.50.000198
S210I210FAttTtt11AY.470.000031
S210I210VAttGtt11AY.50.000021
S210I210TaTtaCt11AY.5.30.000337
S210I210IatTatC11AY.5.40.000277
S210I210IatTatC11AY.550.000917
S210I210TaTtaCt11AY.550.000917
S210I210SaTtaGt11AY.580.000907
S210I210IatTatC11AY.580.000907
S210I210VAttGtt11AY.590.00053
S210I210LAttCtt11AY.60.000041
S210I210TaTtaCt11AY.610.000105
S210I210IatTatA11AY.610.000105
S210I210IatTatC11AY.620.000436
S210I210delATT---11AY.620.000436
S210I210delATT---11AY.640.000595
S210I210TaTtaCt11AY.670.000464
S210I210delATT---11AY.7.10.000113
S210I210delATT---11AY.740.000116
S210I210FAttTtt11AY.750.000056
S210I210delATT---11AY.880.000884
S210I210TaTtaCt11AY.9.10.000084
S210I210delATT---11AY.9.10.000084
S210I210IatTatC11AY.9.20.000037
S210I210TaTtaCt11AY.9.20.000037
S210I210delATT---11AY.910.00073
S210I210delATT---11AY.920.000287
S210I210delATT---11AY.950.000761
S210I210delATT---11AY.960.002075
S210I210delATT---11AY.98.10.000048
S210I210IatTatC11AY.98.10.000048
S210I210GATTGGA11AY.98.10.000048
S210I210delATT---11AY.99.10.001553
S210I210IatTatC11AY.99.20.000092
S210I210SaTtaGt11B.10.000009
S210I210FAttTtt11B.10.000009
S210I210del2aTTa--11B.1.10.000018
S210I210SaTtaGt11B.1.10.000018
S210I210FAttTtt11B.1.10.000018
S210I210LAttCtt11B.1.10.000018
S210I210IatTatA11B.1.1.10.000327
S210I210delATT---11B.1.1.1890.001513
S210I210VAttGtt11B.1.1.2160.00089
S210I210SaTtaGt11B.1.1.2200.001859
S210I210delATT---11B.1.1.3150.008475
S210I210delATT---11B.1.1.3160.000925
S210I210TaTtaCt11B.1.1.3180.000302
S210I210VAttGtt11B.1.1.330.000421
S210I210VAttGtt11B.1.1.3720.000689
S210I210delATT---11B.1.1.390.00051
S210I210delATT---11B.1.1.4130.006897
S210I210VAttGtt11B.1.1.4320.001266
S210I210delATT---11B.1.1.510.001718
S210I210IatTatC11B.1.1.5190.00004
S210I210SaTtaGt11B.1.1.5190.00004
S210I210delATT---11B.1.1.5280.004808
S210I210delATT---11B.1.1.630.000386
S210I210del1aTta-t11B.1.1.70.000001
S210I210delATT---11B.1.1.700.000341
S210I210delATT---11B.1.1.990.02381
S210I210delATT---11B.1.1400.018868
S210I210LAttCtt11B.1.160.160.000929
S210I210delATT---11B.1.160.230.004831
S210I210VAttGtt11B.1.1770.000013
S210I210SaTtaGt11B.1.1770.000013
S210I210FAttTtt11B.1.1770.000013
S210I210LAttCtt11B.1.1770.000013
S210I210VAttGtt11B.1.177.120.000152
S210I210delATT---11B.1.177.160.000664
S210I210delATT---11B.1.177.180.00116
S210I210TaTtaCt11B.1.177.210.000076
S210I210delATT---11B.1.177.60.000977
S210I210delATT---11B.1.177.620.001192
S210I210delATT---11B.1.177.690.001484
S210I210delATT---11B.1.177.800.001912
S210I210VAttGtt11B.1.177.860.000183
S210I210delATT---11B.1.20.000009
S210I210VAttGtt11B.1.20.000009
S210I210FAttTtt11B.1.20.000009
S210I210SaTtaGt11B.1.20.000009
S210I210del2ATt--t11B.1.20.000009
S210I210delATT---11B.1.2180.005155
S210I210delATT---11B.1.2410.000812
S210I210VAttGtt11B.1.2580.000067
S210I210delATT---11B.1.2580.000067
S210I210TaTtaCt11B.1.2580.000067
S210I210del1Att-tt11B.1.258.30.001675
S210I210TaTtaCt11B.1.2790.000514
S210I210TaTtaCt11B.1.3460.001311
S210I210NaTtaAt11B.1.3510.00003
S210I210TaTtaCt11B.1.351.20.000303
S210I210del1aTTa-N11B.1.360.000146
S210I210delATT---11B.1.36.100.004785
S210I210delATT---11B.1.36.120.009615
S210I210delATT---11B.1.36.160.001425
S210I210IatTatC11B.1.36.180.00042
S210I210delATT---11B.1.36.180.00042
S210I210NaTtaAt11B.1.36.290.000517
S210I210delATT---11B.1.36.80.001
S210I210FAttTtt11B.1.3910.001127
S210I210IatTatC11B.1.3970.004854
S210I210delATT---11B.1.4090.000781
S210I210IatTatC11B.1.4270.00005
S210I210FAttTtt11B.1.4270.00005
S210I210TaTtaCt11B.1.4270.00005
S210I210VAttGtt11B.1.4360.001029
S210I210delATT---11B.1.438.10.000107
S210I210IatTatC11B.1.438.10.000107
S210I210VAttGtt11B.1.466.20.000391
S210I210IatTatA11B.1.466.20.000391
S210I210NaTtaAt11B.1.5090.000866
S210I210IatTatA11B.1.5170.000427
S210I210TaTtaCt11B.1.5250.000113
S210I210delATT---11B.1.5330.009615
S210I210delATT---11B.1.5540.004405
S210I210delATT---11B.1.5610.000397
S210I210IatTatC11B.1.5800.004065
S210I210VAttGtt11B.1.5960.000087
S210I210delATT---11B.1.617.10.000129
S210I210MatTatG11B.1.617.20.000004
S210I210delATT---11B.1.6200.000946
S210I210delATT---11B.1.6210.000089
S210I210FAttTtt11B.1.6280.000352
S210I210IatTatC11B.1.6300.005236
S210I210delATT---11B.1.6300.005236
S210I210delATT---11B.1.9.50.005682
S210I210NaTtaAt11B.6.60.000889
S210I210delATT---11C.330.058824
S210I210IatTatA11D.20.000075
S210I210FAttTtt11P.10.000016
S210I210IatTatC11P.10.000016
S210I210delATT---11P.1.10.000318
S210I210TaTtaCt11P.1.150.000232
S210I210delATT---11P.1.40.000977
S210I210VAttGtt11P.30.001595
S210I210TaTtaCt11P.60.003145
S210I210delATT---11Q.10.000126
S210I210delATT---11U.30.003861