CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 21 | R21T | nonsyn | aGa | aCa | 6655 | 6655 | 1 | 21623-21625 | |
S | 21 | R21I | nonsyn | aGa | aTa | 6627 | 6624 | 0.999547 | 21623-21625 | |
S | 21 | R21I | nonsyn | aGA | aTT | 6627 | 3 | 0.000452694 | 21623-21625 | |
S | 21 | R21R | syn | agA | agG | 1072 | 963 | 0.898321 | 21623-21625 | |
S | 21 | R21R | syn | Aga | Cga | 1072 | 109 | 0.101679 | 21623-21625 | |
S | 21 | R21K | nonsyn | aGa | aAa | 681 | 681 | 1 | 21623-21625 | |
S | 21 | R21G | nonsyn | Aga | Gga | 301 | 301 | 1 | 21623-21625 | |
S | 21 | R21S | nonsyn | agA | agC | 161 | 88 | 0.546584 | 21623-21625 | |
S | 21 | R21S | nonsyn | agA | agT | 161 | 73 | 0.453416 | 21623-21625 | |
S | 21 | R21del | del | AGA | --- | 113 | 113 | 1 | 21623-21625 | |
S | 21 | R21F | nonsyn | AGA | TTT | 13 | 13 | 1 | 21623-21625 | |
S | 21 | R21X | nonsyn | Aga | Tga | 12 | 11 | 0.916667 | 21623-21625 | |
S | 21 | R21X | nonsyn | AGa | TAa | 12 | 1 | 0.0833333 | 21623-21625 | |
S | 21 | R21del1 | del | aGa | a-a | 6 | 5 | 0.833333 | 21623-21625 | |
S | 21 | R21del1 | del | Aga | -ga | 6 | 1 | 0.166667 | 21623-21625 | |
S | 21 | R21A | nonsyn | AGa | GCa | 3 | 3 | 1 | 21623-21625 | |
S | 21 | R21L | nonsyn | AGa | TTa | 3 | 3 | 1 | 21623-21625 | |
S | 21 | R21V | nonsyn | AGa | GTa | 2 | 2 | 1 | 21623-21625 | |
S | 21 | R21N | nonsyn | aGA | aAC | 2 | 2 | 1 | 21623-21625 | |
S | 21 | R21E | nonsyn | AGa | GAa | 1 | 1 | 1 | 21623-21625 | |
S | 21 | R21del2 | del | AGa | --a | 1 | 1 | 1 | 21623-21625 | |
S | 21 | R21M | nonsyn | aGA | aTG | 1 | 1 | 1 | 21623-21625 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 21 | R21T | aGa | aCa | 6655 | 6655 | All | 0.001273 |
S | 21 | R21I | aGa | aTa | 6624 | 6627 | All | 0.001267 |
S | 21 | R21I | aGA | aTT | 3 | 6627 | All | 0.000001 |
S | 21 | R21T | aGa | aCa | 4580 | 4580 | AY.70 | 0.954962 |
S | 21 | R21I | aGa | aTa | 1474 | 1474 | AY.4 | 0.002294 |
S | 21 | R21R | agA | agG | 963 | 1072 | All | 0.000184 |
S | 21 | R21R | Aga | Cga | 109 | 1072 | All | 0.000021 |
S | 21 | R21I | aGa | aTa | 890 | 890 | B.1.1.279 | 0.997758 |
S | 21 | R21I | aGa | aTa | 852 | 852 | B.1.1.7 | 0.000763 |
S | 21 | R21K | aGa | aAa | 681 | 681 | All | 0.00013 |
S | 21 | R21R | agA | agG | 460 | 461 | AY.3 | 0.004575 |
S | 21 | R21R | Aga | Cga | 1 | 461 | AY.3 | 0.00001 |
S | 21 | R21T | aGa | aCa | 449 | 449 | B.1.1.7 | 0.000402 |
S | 21 | R21I | aGa | aTa | 384 | 384 | AY.43 | 0.001701 |
S | 21 | R21T | aGa | aCa | 334 | 334 | AY.102 | 0.008856 |
S | 21 | R21I | aGa | aTa | 314 | 314 | B.1.617.2 | 0.001182 |
S | 21 | R21G | Aga | Gga | 301 | 301 | All | 0.000058 |
S | 21 | R21T | aGa | aCa | 233 | 233 | AY.4 | 0.000363 |
S | 21 | R21T | aGa | aCa | 233 | 233 | P.1.14 | 0.011138 |
S | 21 | R21I | aGa | aTa | 217 | 217 | AY.44 | 0.001321 |
S | 21 | R21I | aGa | aTa | 204 | 204 | B.1.1 | 0.003701 |
S | 21 | R21I | aGa | aTa | 172 | 172 | B.1.1.365 | 0.960894 |
S | 21 | R21I | aGa | aTa | 171 | 171 | B.1.1.237 | 0.924324 |
S | 21 | R21S | agA | agC | 88 | 161 | All | 0.000017 |
S | 21 | R21S | agA | agT | 73 | 161 | All | 0.000014 |
S | 21 | R21I | aGa | aTa | 160 | 160 | B.1.1.363 | 0.958084 |
S | 21 | R21T | aGa | aCa | 148 | 148 | B.1.617.2 | 0.000557 |
S | 21 | R21I | aGa | aTa | 145 | 145 | C.37.1 | 0.379581 |
S | 21 | R21K | aGa | aAa | 141 | 141 | AY.25 | 0.000848 |
S | 21 | R21R | agA | agG | 118 | 118 | B.1.1.231 | 0.365325 |
S | 21 | R21del | AGA | --- | 113 | 113 | All | 0.000022 |
S | 21 | R21I | aGa | aTa | 102 | 102 | B.1.2 | 0.000898 |
S | 21 | R21T | aGa | aCa | 101 | 101 | AY.4.2 | 0.002191 |
S | 21 | R21I | aGa | aTa | 98 | 98 | AY.103 | 0.000608 |
S | 21 | R21I | aGa | aTa | 90 | 90 | AY.3 | 0.000895 |
S | 21 | R21K | aGa | aAa | 84 | 84 | B.1.177 | 0.001106 |
S | 21 | R21K | aGa | aAa | 79 | 79 | B.1.1.7 | 0.000071 |
S | 21 | R21R | agA | agG | 75 | 75 | AL.1 | 0.974026 |
S | 21 | R21R | Aga | Cga | 69 | 69 | AY.4.5 | 0.007417 |
S | 21 | R21I | aGa | aTa | 68 | 68 | AY.98.1 | 0.003293 |
S | 21 | R21R | agA | agG | 66 | 66 | B.1.1.7 | 0.000059 |
S | 21 | R21K | aGa | aAa | 66 | 66 | B.1.2 | 0.000581 |
S | 21 | R21I | aGa | aTa | 60 | 60 | B.1.1.149 | 0.983607 |
S | 21 | R21I | aGa | aTa | 57 | 57 | P.1.14 | 0.002725 |
S | 21 | R21R | agA | agG | 56 | 56 | AY.110 | 0.006311 |
S | 21 | R21I | aGa | aTa | 56 | 56 | AY.39 | 0.001384 |
S | 21 | R21G | Aga | Gga | 55 | 55 | AY.3 | 0.000547 |
S | 21 | R21G | Aga | Gga | 53 | 53 | AY.103 | 0.000329 |
S | 21 | R21I | aGa | aTa | 53 | 53 | B.1 | 0.000485 |
S | 21 | R21I | aGa | aTa | 49 | 49 | P.1 | 0.000772 |
S | 21 | R21G | Aga | Gga | 47 | 47 | AY.4 | 0.000073 |
S | 21 | R21S | agA | agT | 25 | 47 | B.1.1.7 | 0.000022 |
S | 21 | R21S | agA | agC | 22 | 47 | B.1.1.7 | 0.00002 |
S | 21 | R21I | aGa | aTa | 43 | 43 | B.1.177 | 0.000566 |
S | 21 | R21I | aGa | aTa | 40 | 40 | AY.117 | 0.003381 |
S | 21 | R21K | aGa | aAa | 39 | 39 | B.1.577 | 0.026804 |
S | 21 | R21I | aGa | aTa | 39 | 39 | P.1.10 | 0.010509 |
S | 21 | R21K | aGa | aAa | 36 | 36 | AY.4 | 0.000056 |
S | 21 | R21T | aGa | aCa | 36 | 36 | AY.43 | 0.000159 |
S | 21 | R21I | aGa | aTa | 32 | 32 | AY.120 | 0.00119 |
S | 21 | R21I | aGa | aTa | 32 | 32 | B.1.1.360 | 1 |
S | 21 | R21R | agA | agG | 30 | 30 | B.39 | 0.06993 |
S | 21 | R21T | aGa | aCa | 29 | 29 | B.1.1.358 | 1 |
S | 21 | R21I | aGa | aTa | 29 | 29 | R.1 | 0.00261 |
S | 21 | R21I | aGa | aTa | 28 | 28 | B.1.1.379 | 0.875 |
S | 21 | R21I | aGa | aTa | 27 | 27 | AY.12 | 0.008534 |
S | 21 | R21K | aGa | aAa | 27 | 27 | B.1.1 | 0.00049 |
S | 21 | R21T | aGa | aCa | 27 | 27 | P.1 | 0.000425 |
S | 21 | R21T | aGa | aCa | 26 | 26 | AY.103 | 0.000161 |
S | 21 | R21I | aGa | aTa | 26 | 26 | AY.25 | 0.000156 |
S | 21 | R21R | Aga | Cga | 22 | 24 | AY.44 | 0.000134 |
S | 21 | R21R | agA | agG | 2 | 24 | AY.44 | 0.000012 |
S | 21 | R21T | aGa | aCa | 24 | 24 | AY.75 | 0.001345 |
S | 21 | R21K | aGa | aAa | 24 | 24 | AY.99.2 | 0.002212 |
S | 21 | R21T | aGa | aCa | 24 | 24 | B.1 | 0.00022 |
S | 21 | R21T | aGa | aCa | 23 | 23 | AY.44 | 0.00014 |
S | 21 | R21I | aGa | aTa | 22 | 22 | AY.5 | 0.000454 |
S | 21 | R21I | aGa | aTa | 22 | 22 | B.1.429 | 0.000518 |
S | 21 | R21T | aGa | aCa | 22 | 22 | B.1.429 | 0.000518 |
S | 21 | R21I | aGa | aTa | 21 | 21 | AY.102 | 0.000557 |
S | 21 | R21T | aGa | aCa | 21 | 21 | AY.25 | 0.000126 |
S | 21 | R21T | aGa | aCa | 20 | 20 | AY.35 | 0.004661 |
S | 21 | R21K | aGa | aAa | 20 | 20 | AY.39.1 | 0.000792 |
S | 21 | R21T | aGa | aCa | 20 | 20 | AY.54 | 0.001907 |
S | 21 | R21I | aGa | aTa | 20 | 20 | B.1.351 | 0.000595 |
S | 21 | R21I | aGa | aTa | 19 | 19 | AY.29 | 0.0003 |
S | 21 | R21T | aGa | aCa | 19 | 19 | B.1.1 | 0.000345 |
S | 21 | R21R | agA | agG | 19 | 19 | B.1.617.2 | 0.000072 |
S | 21 | R21S | agA | agC | 16 | 18 | AY.25 | 0.000096 |
S | 21 | R21S | agA | agT | 2 | 18 | AY.25 | 0.000012 |
S | 21 | R21I | aGa | aTa | 18 | 18 | AY.46.6 | 0.0013 |
S | 21 | R21del | AGA | --- | 18 | 18 | B.1.1.7 | 0.000016 |
S | 21 | R21I | aGa | aTa | 17 | 17 | AY.26 | 0.000481 |
S | 21 | R21R | agA | agG | 17 | 17 | B.1 | 0.000156 |
S | 21 | R21G | Aga | Gga | 17 | 17 | C.37 | 0.001973 |
S | 21 | R21K | aGa | aAa | 16 | 16 | B.1 | 0.000147 |
S | 21 | R21G | Aga | Gga | 16 | 16 | B.1.1.7 | 0.000014 |
S | 21 | R21T | aGa | aCa | 16 | 16 | C.37 | 0.001857 |
S | 21 | R21R | agA | agG | 15 | 15 | AY.117 | 0.001268 |
S | 21 | R21I | aGa | aTa | 15 | 15 | AY.86 | 0.012448 |
S | 21 | R21G | Aga | Gga | 15 | 15 | B.1.177.4 | 0.003166 |
S | 21 | R21T | aGa | aCa | 15 | 15 | B.1.351 | 0.000446 |
S | 21 | R21I | aGa | aTa | 14 | 14 | B.1.526 | 0.000329 |
S | 21 | R21F | AGA | TTT | 13 | 13 | All | 0.000002 |
S | 21 | R21R | agA | agG | 13 | 13 | AY.26 | 0.000368 |
S | 21 | R21I | aGa | aTa | 13 | 13 | AY.45 | 0.001582 |
S | 21 | R21I | aGa | aTa | 13 | 13 | AY.83 | 0.022414 |
S | 21 | R21I | aGa | aTa | 13 | 13 | B.1.1.30 | 1 |
S | 21 | R21G | Aga | Gga | 13 | 13 | B.1.2 | 0.000114 |
S | 21 | R21X | Aga | Tga | 11 | 12 | All | 0.000002 |
S | 21 | R21X | AGa | TAa | 1 | 12 | All | 0 |
S | 21 | R21S | agA | agC | 12 | 12 | AY.23 | 0.000837 |
S | 21 | R21I | aGa | aTa | 12 | 12 | AY.61 | 0.001257 |
S | 21 | R21del | AGA | --- | 12 | 12 | B.1.427 | 0.000606 |
S | 21 | R21K | aGa | aAa | 12 | 12 | B.1.617.2 | 0.000045 |
S | 21 | R21I | aGa | aTa | 12 | 12 | C.37 | 0.001393 |
S | 21 | R21I | aGa | aTa | 11 | 11 | AY.104 | 0.021825 |
S | 21 | R21T | aGa | aCa | 11 | 11 | AY.4.2.1 | 0.001639 |
S | 21 | R21I | aGa | aTa | 11 | 11 | AY.6 | 0.000452 |
S | 21 | R21F | AGA | TTT | 11 | 11 | B.1.1.7 | 0.00001 |
S | 21 | R21I | aGa | aTa | 10 | 10 | AY.100 | 0.00046 |
S | 21 | R21S | agA | agT | 10 | 10 | AY.34 | 0.00097 |
S | 21 | R21I | aGa | aTa | 10 | 10 | B.1.160 | 0.000312 |
S | 21 | R21T | aGa | aCa | 10 | 10 | B.1.177 | 0.000132 |
S | 21 | R21I | aGa | aTa | 10 | 10 | B.1.177.73 | 0.005663 |
S | 21 | R21I | aGa | aTa | 10 | 10 | B.1.195 | 0.050251 |
S | 21 | R21T | aGa | aCa | 10 | 10 | B.1.2 | 0.000088 |
S | 21 | R21I | aGa | aTa | 10 | 10 | B.1.311 | 0.002746 |
S | 21 | R21T | aGa | aCa | 10 | 10 | B.1.637 | 0.000731 |
S | 21 | R21I | aGa | aTa | 9 | 9 | AY.121 | 0.001218 |
S | 21 | R21I | aGa | aTa | 9 | 9 | AY.33 | 0.000601 |
S | 21 | R21del | AGA | --- | 9 | 9 | AY.33 | 0.000601 |
S | 21 | R21S | agA | agC | 5 | 9 | AY.4 | 0.000008 |
S | 21 | R21S | agA | agT | 4 | 9 | AY.4 | 0.000006 |
S | 21 | R21K | aGa | aAa | 9 | 9 | B.1.1.253 | 0.022556 |
S | 21 | R21I | aGa | aTa | 9 | 9 | B.1.1.519 | 0.000357 |
S | 21 | R21I | aGa | aTa | 9 | 9 | B.1.177.21 | 0.000688 |
S | 21 | R21G | Aga | Gga | 9 | 9 | B.1.234 | 0.001187 |
S | 21 | R21G | Aga | Gga | 9 | 9 | B.1.258 | 0.000599 |
S | 21 | R21T | aGa | aCa | 9 | 9 | B.1.617.1 | 0.001161 |
S | 21 | R21R | agA | agG | 5 | 8 | AY.25 | 0.00003 |
S | 21 | R21R | Aga | Cga | 3 | 8 | AY.25 | 0.000018 |
S | 21 | R21K | aGa | aAa | 8 | 8 | AY.44 | 0.000049 |
S | 21 | R21I | aGa | aTa | 8 | 8 | AY.47 | 0.000249 |
S | 21 | R21T | aGa | aCa | 8 | 8 | B.1.1.317 | 0.003294 |
S | 21 | R21T | aGa | aCa | 8 | 8 | P.1.15 | 0.001859 |
S | 21 | R21T | aGa | aCa | 8 | 8 | P.2 | 0.001493 |
S | 21 | R21I | aGa | aTa | 7 | 7 | AY.119 | 0.000247 |
S | 21 | R21I | aGa | aTa | 7 | 7 | AY.14 | 0.000616 |
S | 21 | R21R | agA | agG | 6 | 7 | AY.4 | 0.000009 |
S | 21 | R21R | Aga | Cga | 1 | 7 | AY.4 | 0.000002 |
S | 21 | R21I | aGa | aTa | 7 | 7 | AY.4.2 | 0.000152 |
S | 21 | R21K | aGa | aAa | 7 | 7 | AY.41 | 0.002058 |
S | 21 | R21I | aGa | aTa | 7 | 7 | AY.42 | 0.000282 |
S | 21 | R21I | aGa | aTa | 7 | 7 | AY.46 | 0.000729 |
S | 21 | R21R | agA | agG | 7 | 7 | AY.46.1 | 0.007187 |
S | 21 | R21K | aGa | aAa | 7 | 7 | AY.75 | 0.000392 |
S | 21 | R21R | agA | agG | 7 | 7 | AY.9.2 | 0.000257 |
S | 21 | R21R | agA | agG | 7 | 7 | B.1.2 | 0.000062 |
S | 21 | R21I | aGa | aTa | 7 | 7 | B.1.258 | 0.000466 |
S | 21 | R21T | aGa | aCa | 7 | 7 | B.1.526 | 0.000165 |
S | 21 | R21G | Aga | Gga | 7 | 7 | B.1.617.2 | 0.000026 |
S | 21 | R21del1 | aGa | a-a | 5 | 6 | All | 0.000001 |
S | 21 | R21del1 | Aga | -ga | 1 | 6 | All | 0 |
S | 21 | R21K | aGa | aAa | 6 | 6 | AY.103 | 0.000037 |
S | 21 | R21R | agA | agG | 6 | 6 | AY.111 | 0.001099 |
S | 21 | R21I | aGa | aTa | 6 | 6 | AY.118 | 0.000376 |
S | 21 | R21I | aGa | aTa | 6 | 6 | AY.20 | 0.000233 |
S | 21 | R21S | agA | agC | 4 | 6 | AY.43 | 0.000018 |
S | 21 | R21S | agA | agT | 2 | 6 | AY.43 | 0.000009 |
S | 21 | R21I | aGa | aTa | 6 | 6 | AY.9.2 | 0.00022 |
S | 21 | R21G | Aga | Gga | 6 | 6 | B.1 | 0.000055 |
S | 21 | R21del | AGA | --- | 6 | 6 | B.1.1 | 0.000109 |
S | 21 | R21I | aGa | aTa | 6 | 6 | B.1.1.222 | 0.001224 |
S | 21 | R21K | aGa | aAa | 6 | 6 | B.1.1.50 | 0.004073 |
S | 21 | R21S | agA | agT | 5 | 6 | B.1.177 | 0.000066 |
S | 21 | R21S | agA | agC | 1 | 6 | B.1.177 | 0.000013 |
S | 21 | R21T | aGa | aCa | 6 | 6 | B.1.595 | 0.001566 |
S | 21 | R21I | aGa | aTa | 6 | 6 | B.1.617.1 | 0.000774 |
S | 21 | R21T | aGa | aCa | 5 | 5 | A.2.5.3 | 0.051546 |
S | 21 | R21del | AGA | --- | 5 | 5 | AY.103 | 0.000031 |
S | 21 | R21I | aGa | aTa | 5 | 5 | AY.113 | 0.000712 |
S | 21 | R21K | aGa | aAa | 5 | 5 | AY.3 | 0.00005 |
S | 21 | R21T | aGa | aCa | 5 | 5 | AY.3 | 0.00005 |
S | 21 | R21S | agA | agC | 3 | 5 | AY.3 | 0.00003 |
S | 21 | R21S | agA | agT | 2 | 5 | AY.3 | 0.00002 |
S | 21 | R21T | aGa | aCa | 5 | 5 | AY.33 | 0.000334 |
S | 21 | R21del | AGA | --- | 5 | 5 | AY.44 | 0.00003 |
S | 21 | R21S | agA | agC | 5 | 5 | AY.88 | 0.004421 |
S | 21 | R21I | aGa | aTa | 5 | 5 | AY.9.1 | 0.000419 |
S | 21 | R21T | aGa | aCa | 5 | 5 | AY.99.2 | 0.000461 |
S | 21 | R21R | Aga | Cga | 4 | 5 | B.1.177 | 0.000053 |
S | 21 | R21R | agA | agG | 1 | 5 | B.1.177 | 0.000013 |
S | 21 | R21I | aGa | aTa | 5 | 5 | B.1.232 | 0.002687 |
S | 21 | R21I | aGa | aTa | 5 | 5 | B.1.252 | 0.033113 |
S | 21 | R21I | aGa | aTa | 5 | 5 | B.1.427 | 0.000252 |
S | 21 | R21T | aGa | aCa | 5 | 5 | B.1.466.2 | 0.001956 |
S | 21 | R21K | aGa | aAa | 5 | 5 | B.1.609 | 0.002397 |
S | 21 | R21I | aGa | aTa | 5 | 5 | C.36.3 | 0.002836 |
S | 21 | R21T | aGa | aCa | 5 | 5 | R.1 | 0.00045 |
S | 21 | R21I | aGa | aTa | 4 | 4 | AY.101 | 0.001962 |
S | 21 | R21K | aGa | aAa | 4 | 4 | AY.102 | 0.000106 |
S | 21 | R21I | aGa | aTa | 4 | 4 | AY.116.1 | 0.001246 |
S | 21 | R21del | AGA | --- | 4 | 4 | AY.120 | 0.000149 |
S | 21 | R21I | aGa | aTa | 4 | 4 | AY.23 | 0.000279 |
S | 21 | R21I | aGa | aTa | 4 | 4 | AY.36 | 0.000593 |
S | 21 | R21I | aGa | aTa | 4 | 4 | AY.39.1 | 0.000158 |
S | 21 | R21del | AGA | --- | 4 | 4 | AY.4 | 0.000006 |
S | 21 | R21G | Aga | Gga | 4 | 4 | AY.43 | 0.000018 |
S | 21 | R21del | AGA | --- | 4 | 4 | AY.43 | 0.000018 |
S | 21 | R21G | Aga | Gga | 4 | 4 | AY.44 | 0.000024 |
S | 21 | R21I | aGA | aTT | 3 | 4 | AY.52 | 0.002443 |
S | 21 | R21I | aGa | aTa | 1 | 4 | AY.52 | 0.000814 |
S | 21 | R21G | Aga | Gga | 4 | 4 | AY.69 | 0.000747 |
S | 21 | R21I | aGa | aTa | 4 | 4 | AY.84 | 0.00175 |
S | 21 | R21R | agA | agG | 4 | 4 | AY.85 | 0.001709 |
S | 21 | R21T | aGa | aCa | 4 | 4 | AY.9.2 | 0.000147 |
S | 21 | R21I | aGa | aTa | 4 | 4 | AY.98 | 0.000316 |
S | 21 | R21I | aGa | aTa | 4 | 4 | B | 0.000511 |
S | 21 | R21G | Aga | Gga | 4 | 4 | B.1.1 | 0.000073 |
S | 21 | R21T | aGa | aCa | 4 | 4 | B.1.1.136 | 0.085106 |
S | 21 | R21R | agA | agG | 4 | 4 | B.1.1.434 | 0.001394 |
S | 21 | R21X | Aga | Tga | 4 | 4 | B.1.1.7 | 0.000004 |
S | 21 | R21I | aGa | aTa | 4 | 4 | B.1.177.12 | 0.000607 |
S | 21 | R21I | aGa | aTa | 4 | 4 | B.1.177.60 | 0.000874 |
S | 21 | R21I | aGa | aTa | 4 | 4 | B.1.206 | 0.003263 |
S | 21 | R21I | aGa | aTa | 4 | 4 | B.1.351.2 | 0.00121 |
S | 21 | R21I | aGa | aTa | 4 | 4 | B.1.36 | 0.000584 |
S | 21 | R21T | aGa | aCa | 4 | 4 | B.1.427 | 0.000202 |
S | 21 | R21K | aGa | aAa | 4 | 4 | B.1.526 | 0.000094 |
S | 21 | R21R | Aga | Cga | 3 | 4 | B.1.526 | 0.000071 |
S | 21 | R21R | agA | agG | 1 | 4 | B.1.526 | 0.000024 |
S | 21 | R21R | agA | agG | 4 | 4 | B.1.596 | 0.000349 |
S | 21 | R21S | agA | agC | 2 | 4 | B.1.617.2 | 0.000008 |
S | 21 | R21S | agA | agT | 2 | 4 | B.1.617.2 | 0.000008 |
S | 21 | R21K | aGa | aAa | 4 | 4 | B.1.637 | 0.000292 |
S | 21 | R21I | aGa | aTa | 4 | 4 | C.36 | 0.003643 |
S | 21 | R21I | aGa | aTa | 4 | 4 | P.2 | 0.000747 |
S | 21 | R21I | aGa | aTa | 4 | 4 | Q.1 | 0.000505 |
S | 21 | R21T | aGa | aCa | 3 | 3 | A.2.5.2 | 0.004717 |
S | 21 | R21I | aGa | aTa | 3 | 3 | A.23.1 | 0.002113 |
S | 21 | R21T | aGa | aCa | 3 | 3 | AH.3 | 0.011407 |
S | 21 | R21A | AGa | GCa | 3 | 3 | All | 0.000001 |
S | 21 | R21L | AGa | TTa | 3 | 3 | All | 0.000001 |
S | 21 | R21I | aGa | aTa | 3 | 3 | AY.106 | 0.001005 |
S | 21 | R21R | agA | agG | 3 | 3 | AY.106 | 0.001005 |
S | 21 | R21T | aGa | aCa | 3 | 3 | AY.114 | 0.000693 |
S | 21 | R21K | aGa | aAa | 3 | 3 | AY.120 | 0.000112 |
S | 21 | R21T | aGa | aCa | 3 | 3 | AY.20 | 0.000117 |
S | 21 | R21del | AGA | --- | 3 | 3 | AY.3 | 0.00003 |
S | 21 | R21S | agA | agT | 3 | 3 | AY.33 | 0.0002 |
S | 21 | R21A | AGa | GCa | 3 | 3 | AY.4 | 0.000005 |
S | 21 | R21T | aGa | aCa | 3 | 3 | AY.4.5 | 0.000322 |
S | 21 | R21T | aGa | aCa | 3 | 3 | AY.42 | 0.000121 |
S | 21 | R21R | agA | agG | 3 | 3 | AY.43 | 0.000013 |
S | 21 | R21S | agA | agC | 3 | 3 | AY.45 | 0.000365 |
S | 21 | R21T | aGa | aCa | 3 | 3 | AY.47 | 0.000093 |
S | 21 | R21G | Aga | Gga | 3 | 3 | AY.5 | 0.000062 |
S | 21 | R21I | aGa | aTa | 3 | 3 | AY.7 | 0.000588 |
S | 21 | R21I | aGa | aTa | 3 | 3 | AY.7.1 | 0.000338 |
S | 21 | R21I | aGa | aTa | 3 | 3 | AY.7.2 | 0.001678 |
S | 21 | R21I | aGa | aTa | 3 | 3 | AY.74 | 0.000347 |
S | 21 | R21T | aGa | aCa | 3 | 3 | B.1.1.222 | 0.000612 |
S | 21 | R21T | aGa | aCa | 3 | 3 | B.1.1.226 | 0.017442 |
S | 21 | R21I | aGa | aTa | 3 | 3 | B.1.1.28 | 0.000934 |
S | 21 | R21K | aGa | aAa | 3 | 3 | B.1.1.28 | 0.000934 |
S | 21 | R21I | aGa | aTa | 3 | 3 | B.1.1.284 | 0.000322 |
S | 21 | R21I | aGa | aTa | 3 | 3 | B.1.1.355 | 0.046154 |
S | 21 | R21I | aGa | aTa | 3 | 3 | B.1.1.369 | 0.001339 |
S | 21 | R21L | AGa | TTa | 3 | 3 | B.1.1.7 | 0.000003 |
S | 21 | R21I | aGa | aTa | 3 | 3 | B.1.1.70 | 0.001023 |
S | 21 | R21K | aGa | aAa | 3 | 3 | B.1.160 | 0.000094 |
S | 21 | R21T | aGa | aCa | 3 | 3 | B.1.160 | 0.000094 |
S | 21 | R21T | aGa | aCa | 3 | 3 | B.1.240 | 0.000647 |
S | 21 | R21I | aGa | aTa | 3 | 3 | B.1.243 | 0.000209 |
S | 21 | R21R | agA | agG | 3 | 3 | B.1.389 | 0.003006 |
S | 21 | R21I | aGa | aTa | 3 | 3 | B.1.39 | 0.011719 |
S | 21 | R21del | AGA | --- | 3 | 3 | B.1.525 | 0.000339 |
S | 21 | R21I | aGa | aTa | 3 | 3 | B.1.576 | 0.00272 |
S | 21 | R21K | aGa | aAa | 3 | 3 | B.1.582 | 0.001472 |
S | 21 | R21T | aGa | aCa | 3 | 3 | B.47 | 0.061224 |
S | 21 | R21T | aGa | aCa | 3 | 3 | D.2 | 0.000225 |
S | 21 | R21T | aGa | aCa | 3 | 3 | N.5 | 0.0053 |
S | 21 | R21I | aGa | aTa | 3 | 3 | N.5 | 0.0053 |
S | 21 | R21del | AGA | --- | 3 | 3 | P.1 | 0.000047 |
S | 21 | R21I | aGa | aTa | 3 | 3 | P.1.12 | 0.001452 |
S | 21 | R21I | aGa | aTa | 3 | 3 | P.1.15 | 0.000697 |
S | 21 | R21I | aGa | aTa | 3 | 3 | P.1.2 | 0.003468 |
S | 21 | R21I | aGa | aTa | 2 | 2 | A | 0.000774 |
S | 21 | R21I | aGa | aTa | 2 | 2 | A.2.5 | 0.000998 |
S | 21 | R21V | AGa | GTa | 2 | 2 | All | 0 |
S | 21 | R21N | aGA | aAC | 2 | 2 | All | 0 |
S | 21 | R21G | Aga | Gga | 2 | 2 | AY.102 | 0.000053 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.109 | 0.001479 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.117 | 0.000169 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.120 | 0.000074 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.13 | 0.000322 |
S | 21 | R21K | aGa | aAa | 2 | 2 | AY.20 | 0.000078 |
S | 21 | R21R | agA | agG | 2 | 2 | AY.23 | 0.000139 |
S | 21 | R21del | AGA | --- | 2 | 2 | AY.25 | 0.000012 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.27 | 0.000129 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.27 | 0.000129 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.34 | 0.000194 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.35 | 0.000466 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.39 | 0.000049 |
S | 21 | R21K | aGa | aAa | 2 | 2 | AY.39 | 0.000049 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.39.1 | 0.000079 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.4.2.1 | 0.000298 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.4.4 | 0.000818 |
S | 21 | R21S | agA | agC | 2 | 2 | AY.40 | 0.001929 |
S | 21 | R21G | Aga | Gga | 2 | 2 | AY.42 | 0.00008 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.45 | 0.000243 |
S | 21 | R21K | aGa | aAa | 2 | 2 | AY.46 | 0.000208 |
S | 21 | R21S | agA | agT | 2 | 2 | AY.5 | 0.000041 |
S | 21 | R21K | aGa | aAa | 2 | 2 | AY.5 | 0.000041 |
S | 21 | R21G | Aga | Gga | 2 | 2 | AY.51 | 0.001818 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.53 | 0.000575 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.54 | 0.000191 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.61 | 0.00021 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.68 | 0.000547 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.75 | 0.000112 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.75.1 | 0.000361 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.9 | 0.000135 |
S | 21 | R21T | aGa | aCa | 2 | 2 | AY.92 | 0.000575 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.93 | 0.000546 |
S | 21 | R21I | aGa | aTa | 2 | 2 | AY.94 | 0.000885 |
S | 21 | R21K | aGa | aAa | 2 | 2 | AY.98 | 0.000158 |
S | 21 | R21R | agA | agG | 2 | 2 | AY.98.1 | 0.000097 |
S | 21 | R21G | Aga | Gga | 2 | 2 | AY.99.2 | 0.000184 |
S | 21 | R21del | AGA | --- | 2 | 2 | B.1 | 0.000018 |
S | 21 | R21R | Aga | Cga | 1 | 2 | B.1.1 | 0.000018 |
S | 21 | R21S | agA | agC | 1 | 2 | B.1.1 | 0.000018 |
S | 21 | R21S | agA | agT | 1 | 2 | B.1.1 | 0.000018 |
S | 21 | R21R | agA | agG | 1 | 2 | B.1.1 | 0.000018 |
S | 21 | R21T | aGa | aCa | 2 | 2 | B.1.1.207 | 0.002364 |
S | 21 | R21R | agA | agG | 2 | 2 | B.1.1.216 | 0.001781 |
S | 21 | R21T | aGa | aCa | 2 | 2 | B.1.1.311 | 0.000716 |
S | 21 | R21T | aGa | aCa | 2 | 2 | B.1.1.326 | 0.003521 |
S | 21 | R21K | aGa | aAa | 2 | 2 | B.1.1.326 | 0.003521 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.1.371 | 0.020833 |
S | 21 | R21K | aGa | aAa | 2 | 2 | B.1.1.519 | 0.000079 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.111 | 0.00235 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.13 | 0.004751 |
S | 21 | R21K | aGa | aAa | 2 | 2 | B.1.160.8 | 0.002577 |
S | 21 | R21T | aGa | aCa | 2 | 2 | B.1.177.60 | 0.000437 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.210 | 0.004264 |
S | 21 | R21T | aGa | aCa | 2 | 2 | B.1.241 | 0.001623 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.258.17 | 0.000208 |
S | 21 | R21G | Aga | Gga | 2 | 2 | B.1.258.17 | 0.000208 |
S | 21 | R21K | aGa | aAa | 2 | 2 | B.1.282 | 0.029851 |
S | 21 | R21K | aGa | aAa | 2 | 2 | B.1.298 | 0.004228 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.313 | 0.013158 |
S | 21 | R21G | Aga | Gga | 2 | 2 | B.1.351 | 0.000059 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.351.3 | 0.001753 |
S | 21 | R21K | aGa | aAa | 2 | 2 | B.1.36.1 | 0.002281 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.36.31 | 0.003503 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.398 | 0.005952 |
S | 21 | R21G | Aga | Gga | 2 | 2 | B.1.429 | 0.000047 |
S | 21 | R21R | agA | agG | 2 | 2 | B.1.439 | 0.011834 |
S | 21 | R21K | aGa | aAa | 2 | 2 | B.1.492 | 0.014085 |
S | 21 | R21G | Aga | Gga | 2 | 2 | B.1.575 | 0.000607 |
S | 21 | R21G | Aga | Gga | 2 | 2 | B.1.596 | 0.000174 |
S | 21 | R21T | aGa | aCa | 2 | 2 | B.1.605 | 0.011905 |
S | 21 | R21del | AGA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.617.3 | 0.00597 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.621 | 0.000177 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.1.637 | 0.000146 |
S | 21 | R21I | aGa | aTa | 2 | 2 | B.6.5 | 0.153846 |
S | 21 | R21K | aGa | aAa | 2 | 2 | C.16 | 0.002121 |
S | 21 | R21T | aGa | aCa | 2 | 2 | L.3 | 0.007092 |
S | 21 | R21I | aGa | aTa | 2 | 2 | P.1.7 | 0.000639 |
S | 21 | R21S | agA | agT | 1 | 2 | P.2 | 0.000187 |
S | 21 | R21S | agA | agC | 1 | 2 | P.2 | 0.000187 |
S | 21 | R21I | aGa | aTa | 2 | 2 | Q.3 | 0.00029 |
S | 21 | R21I | aGa | aTa | 2 | 2 | V.1 | 0.045455 |
S | 21 | R21I | aGa | aTa | 1 | 1 | 0.055556 | |
S | 21 | R21T | aGa | aCa | 1 | 1 | A | 0.000387 |
S | 21 | R21R | agA | agG | 1 | 1 | A.2.4 | 0.003367 |
S | 21 | R21del | AGA | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 21 | R21T | aGa | aCa | 1 | 1 | A.2.5 | 0.000499 |
S | 21 | R21K | aGa | aAa | 1 | 1 | A.27 | 0.001656 |
S | 21 | R21N | aGA | aAC | 1 | 1 | A.28 | 0.002646 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AE.8 | 0.000489 |
S | 21 | R21M | aGA | aTG | 1 | 1 | All | 0 |
S | 21 | R21E | AGa | GAa | 1 | 1 | All | 0 |
S | 21 | R21del2 | AGa | --a | 1 | 1 | All | 0 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.1 | 0.000396 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.100 | 0.000046 |
S | 21 | R21S | agA | agC | 1 | 1 | AY.100 | 0.000046 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.101 | 0.00049 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.102 | 0.000027 |
S | 21 | R21S | agA | agT | 1 | 1 | AY.102 | 0.000027 |
S | 21 | R21S | agA | agC | 1 | 1 | AY.103 | 0.000006 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.116 | 0.000287 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.116 | 0.000287 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.116.1 | 0.000311 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.117 | 0.000085 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.118 | 0.000063 |
S | 21 | R21S | agA | agC | 1 | 1 | AY.118 | 0.000063 |
S | 21 | R21T | aGa | aCa | 1 | 1 | AY.119 | 0.000035 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.119 | 0.000035 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.13 | 0.000161 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.13 | 0.000161 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.16 | 0.00038 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.2 | 0.000356 |
S | 21 | R21del1 | aGa | a-a | 1 | 1 | AY.23 | 0.00007 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.23 | 0.00007 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.23.1 | 0.000417 |
S | 21 | R21G | Aga | Gga | 1 | 1 | AY.25 | 0.000006 |
S | 21 | R21X | Aga | Tga | 1 | 1 | AY.26 | 0.000028 |
S | 21 | R21G | Aga | Gga | 1 | 1 | AY.26 | 0.000028 |
S | 21 | R21T | aGa | aCa | 1 | 1 | AY.26 | 0.000028 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.28 | 0.00189 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.29 | 0.000016 |
S | 21 | R21G | Aga | Gga | 1 | 1 | AY.29 | 0.000016 |
S | 21 | R21S | agA | agT | 1 | 1 | AY.29 | 0.000016 |
S | 21 | R21G | Aga | Gga | 1 | 1 | AY.29.1 | 0.000221 |
S | 21 | R21M | aGA | aTG | 1 | 1 | AY.3 | 0.00001 |
S | 21 | R21G | Aga | Gga | 1 | 1 | AY.3.1 | 0.000085 |
S | 21 | R21T | aGa | aCa | 1 | 1 | AY.30 | 0.000396 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.32 | 0.000532 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.32 | 0.000532 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.36 | 0.000148 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.39 | 0.000025 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.39 | 0.000025 |
S | 21 | R21G | Aga | Gga | 1 | 1 | AY.39.1 | 0.00004 |
S | 21 | R21del1 | aGa | a-a | 1 | 1 | AY.39.1 | 0.00004 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.39.1 | 0.00004 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.4.2 | 0.000022 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.4.2 | 0.000022 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.4.4 | 0.000409 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.42 | 0.00004 |
S | 21 | R21S | agA | agT | 1 | 1 | AY.42 | 0.00004 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.42 | 0.00004 |
S | 21 | R21S | agA | agC | 1 | 1 | AY.44 | 0.000006 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.45 | 0.000122 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.46 | 0.000104 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
S | 21 | R21R | Aga | Cga | 1 | 1 | AY.46.6 | 0.000072 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.47 | 0.000031 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.5 | 0.000021 |
S | 21 | R21T | aGa | aCa | 1 | 1 | AY.5 | 0.000021 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.5.2 | 0.002463 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.5.3 | 0.000337 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.5.3 | 0.000337 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.5.4 | 0.000277 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.54 | 0.000095 |
S | 21 | R21S | agA | agT | 1 | 1 | AY.55 | 0.000917 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.55 | 0.000917 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.58 | 0.000907 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.59 | 0.00053 |
S | 21 | R21T | aGa | aCa | 1 | 1 | AY.6 | 0.000041 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.6 | 0.000041 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AY.61 | 0.000105 |
S | 21 | R21S | agA | agT | 1 | 1 | AY.61 | 0.000105 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.63 | 0.000387 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.68 | 0.000274 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.69 | 0.000187 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.70 | 0.000209 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.71 | 0.000475 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.78 | 0.001541 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.82 | 0.001357 |
S | 21 | R21R | agA | agG | 1 | 1 | AY.82 | 0.001357 |
S | 21 | R21S | agA | agC | 1 | 1 | AY.83 | 0.001724 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.88 | 0.000884 |
S | 21 | R21S | agA | agT | 1 | 1 | AY.9 | 0.000068 |
S | 21 | R21T | aGa | aCa | 1 | 1 | AY.9.1 | 0.000084 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 21 | R21T | aGa | aCa | 1 | 1 | AY.90 | 0.000684 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.90 | 0.000684 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.92 | 0.000287 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.96 | 0.002075 |
S | 21 | R21del | AGA | --- | 1 | 1 | AY.98 | 0.000079 |
S | 21 | R21G | Aga | Gga | 1 | 1 | AY.98.1 | 0.000048 |
S | 21 | R21T | aGa | aCa | 1 | 1 | AY.98.1 | 0.000048 |
S | 21 | R21I | aGa | aTa | 1 | 1 | AY.99 | 0.001049 |
S | 21 | R21K | aGa | aAa | 1 | 1 | AZ.3 | 0.00152 |
S | 21 | R21R | agA | agG | 1 | 1 | B | 0.000128 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B | 0.000128 |
S | 21 | R21X | Aga | Tga | 1 | 1 | B | 0.000128 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B | 0.000128 |
S | 21 | R21S | agA | agC | 1 | 1 | B.1 | 0.000009 |
S | 21 | R21del1 | aGa | a-a | 1 | 1 | B.1.1 | 0.000018 |
S | 21 | R21X | Aga | Tga | 1 | 1 | B.1.1 | 0.000018 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.1 | 0.000327 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.1.1 | 0.000327 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.101 | 0.01 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.111 | 0.014706 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.133 | 0.008475 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.176 | 0.000439 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.1.214 | 0.000055 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.216 | 0.00089 |
S | 21 | R21R | agA | agG | 1 | 1 | B.1.1.220 | 0.001859 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.1.222 | 0.000204 |
S | 21 | R21R | Aga | Cga | 1 | 1 | B.1.1.222 | 0.000204 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.226 | 0.005814 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.232 | 0.001815 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.1.25 | 0.000569 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.277 | 0.000759 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.29 | 0.010309 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.294 | 0.001266 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.302 | 0.002075 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
S | 21 | R21del2 | AGa | --a | 1 | 1 | B.1.1.306 | 0.000438 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.307 | 0.002532 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.326 | 0.001761 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
S | 21 | R21X | Aga | Tga | 1 | 1 | B.1.1.331 | 0.011628 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.37 | 0.000193 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.370 | 0.012658 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.378 | 0.007299 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.1.401 | 0.066667 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.406 | 0.006494 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.411 | 0.014706 |
S | 21 | R21R | Aga | Cga | 1 | 1 | B.1.1.416 | 0.000905 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.416 | 0.000905 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.442 | 0.018519 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 21 | R21R | agA | agG | 1 | 1 | B.1.1.464 | 0.001473 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.48 | 0.002874 |
S | 21 | R21R | Aga | Cga | 1 | 1 | B.1.1.486 | 0.001577 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.1.51 | 0.001718 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 21 | R21S | agA | agT | 1 | 1 | B.1.1.519 | 0.00004 |
S | 21 | R21del1 | aGa | a-a | 1 | 1 | B.1.1.7 | 0.000001 |
S | 21 | R21V | AGa | GTa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 21 | R21S | agA | agC | 1 | 1 | B.1.1.70 | 0.000341 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.1.83 | 0.00271 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.111 | 0.001175 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.13 | 0.002375 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.139 | 0.000733 |
S | 21 | R21S | agA | agC | 1 | 1 | B.1.142 | 0.002899 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.142 | 0.002899 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.147 | 0.000756 |
S | 21 | R21S | agA | agT | 1 | 1 | B.1.160 | 0.000031 |
S | 21 | R21R | agA | agG | 1 | 1 | B.1.160 | 0.000031 |
S | 21 | R21X | Aga | Tga | 1 | 1 | B.1.160 | 0.000031 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.177 | 0.000013 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.177.17 | 0.000821 |
S | 21 | R21del1 | aGa | a-a | 1 | 1 | B.1.177.21 | 0.000076 |
S | 21 | R21R | agA | agG | 1 | 1 | B.1.177.24 | 0.001295 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.177.57 | 0.000281 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.177.75 | 0.001041 |
S | 21 | R21S | agA | agC | 1 | 1 | B.1.177.75 | 0.001041 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.177.8 | 0.000752 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.177.81 | 0.000189 |
S | 21 | R21R | agA | agG | 1 | 1 | B.1.177.81 | 0.000189 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.177.82 | 0.000477 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.177.9 | 0.001332 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 21 | R21V | AGa | GTa | 1 | 1 | B.1.2 | 0.000009 |
S | 21 | R21S | agA | agT | 1 | 1 | B.1.2 | 0.000009 |
S | 21 | R21X | Aga | Tga | 1 | 1 | B.1.206 | 0.000816 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.206 | 0.000816 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.221 | 0.000071 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.221.2 | 0.004016 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.232 | 0.000537 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.243 | 0.00007 |
S | 21 | R21S | agA | agT | 1 | 1 | B.1.243 | 0.00007 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.243 | 0.00007 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.258 | 0.000067 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.258 | 0.000067 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.258.3 | 0.001675 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.258.7 | 0.001912 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.260 | 0.003344 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.279 | 0.000514 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.298 | 0.002114 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.301 | 0.005917 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.311 | 0.000275 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.315 | 0.006061 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.336 | 0.002439 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.349 | 0.000715 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.36 | 0.000146 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.36.10 | 0.004785 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.36.16 | 0.001425 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.36.17 | 0.000494 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.36.22 | 0.001208 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.36.27 | 0.000763 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.36.29 | 0.000517 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.36.8 | 0.001 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.361 | 0.001289 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.369 | 0.000285 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.369 | 0.000285 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.391 | 0.001127 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.391 | 0.001127 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.393 | 0.028571 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.396 | 0.000706 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.413 | 0.004255 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.416.1 | 0.001563 |
S | 21 | R21S | agA | agC | 1 | 1 | B.1.424 | 0.008065 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.427 | 0.00005 |
S | 21 | R21N | aGA | aAC | 1 | 1 | B.1.429 | 0.000024 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.429 | 0.000024 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.429 | 0.000024 |
S | 21 | R21S | agA | agC | 1 | 1 | B.1.433 | 0.003195 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.438.1 | 0.000107 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.438.1 | 0.000107 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.438.1 | 0.000107 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.497 | 0.000315 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.497 | 0.000315 |
S | 21 | R21X | Aga | Tga | 1 | 1 | B.1.517 | 0.000427 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.517 | 0.000427 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.524 | 0.001406 |
S | 21 | R21del1 | Aga | -ga | 1 | 1 | B.1.525 | 0.000113 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 21 | R21S | agA | agT | 1 | 1 | B.1.526 | 0.000024 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.533 | 0.009615 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.564 | 0.000426 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.565 | 0.00081 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.568 | 0.001111 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.568 | 0.001111 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.1.575 | 0.000303 |
S | 21 | R21S | agA | agT | 1 | 1 | B.1.575.1 | 0.002439 |
S | 21 | R21R | agA | agG | 1 | 1 | B.1.577 | 0.000687 |
S | 21 | R21G | Aga | Gga | 1 | 1 | B.1.588 | 0.00091 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.596 | 0.000087 |
S | 21 | R21R | agA | agG | 1 | 1 | B.1.609 | 0.000479 |
S | 21 | R21X | AGa | TAa | 1 | 1 | B.1.609 | 0.000479 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.612 | 0.002653 |
S | 21 | R21F | AGA | TTT | 1 | 1 | B.1.617.2 | 0.000004 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.619 | 0.000871 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.620 | 0.000946 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.1.621 | 0.000089 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.1.623 | 0.000536 |
S | 21 | R21R | agA | agG | 1 | 1 | B.3 | 0.000831 |
S | 21 | R21I | aGa | aTa | 1 | 1 | B.3.1 | 0.001658 |
S | 21 | R21T | aGa | aCa | 1 | 1 | B.40 | 0.000364 |
S | 21 | R21K | aGa | aAa | 1 | 1 | B.45 | 0.003831 |
S | 21 | R21del | AGA | --- | 1 | 1 | B.61 | 0.005747 |
S | 21 | R21T | aGa | aCa | 1 | 1 | C.16 | 0.00106 |
S | 21 | R21R | agA | agG | 1 | 1 | C.16 | 0.00106 |
S | 21 | R21T | aGa | aCa | 1 | 1 | C.31 | 0.017857 |
S | 21 | R21F | AGA | TTT | 1 | 1 | C.36.3 | 0.000567 |
S | 21 | R21S | agA | agT | 1 | 1 | D.2 | 0.000075 |
S | 21 | R21G | Aga | Gga | 1 | 1 | D.2 | 0.000075 |
S | 21 | R21E | AGa | GAa | 1 | 1 | D.2 | 0.000075 |
S | 21 | R21K | aGa | aAa | 1 | 1 | D.2 | 0.000075 |
S | 21 | R21K | aGa | aAa | 1 | 1 | P.1 | 0.000016 |
S | 21 | R21S | agA | agT | 1 | 1 | P.1 | 0.000016 |
S | 21 | R21I | aGa | aTa | 1 | 1 | P.1.10.2 | 0.041667 |
S | 21 | R21T | aGa | aCa | 1 | 1 | P.1.12 | 0.000484 |
S | 21 | R21I | aGa | aTa | 1 | 1 | P.1.16 | 0.000374 |
S | 21 | R21I | aGa | aTa | 1 | 1 | P.1.17 | 0.000162 |
S | 21 | R21R | Aga | Cga | 1 | 1 | P.1.4 | 0.000977 |
S | 21 | R21T | aGa | aCa | 1 | 1 | P.1.7 | 0.000319 |
S | 21 | R21K | aGa | aAa | 1 | 1 | P.2 | 0.000187 |
S | 21 | R21R | agA | agG | 1 | 1 | P.2 | 0.000187 |
S | 21 | R21T | aGa | aCa | 1 | 1 | Q.1 | 0.000126 |
S | 21 | R21T | aGa | aCa | 1 | 1 | Q.3 | 0.000145 |
S | 21 | R21I | aGa | aTa | 1 | 1 | Q.7 | 0.001111 |
S | 21 | R21T | aGa | aCa | 1 | 1 | Q.8 | 0.000165 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|