CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 21

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	21	R21T		nonsyn	aGa	aCa	6655	6655	1	21623-21625
S	21	R21I		nonsyn	aGa	aTa	6627	6624	0.999547	21623-21625
S	21	R21I		nonsyn	aGA	aTT	6627	3	0.000452694	21623-21625
S	21	R21R		syn	agA	agG	1072	963	0.898321	21623-21625
S	21	R21R		syn	Aga	Cga	1072	109	0.101679	21623-21625
S	21	R21K		nonsyn	aGa	aAa	681	681	1	21623-21625
S	21	R21G		nonsyn	Aga	Gga	301	301	1	21623-21625
S	21	R21S		nonsyn	agA	agC	161	88	0.546584	21623-21625
S	21	R21S		nonsyn	agA	agT	161	73	0.453416	21623-21625
S	21	R21del		del	AGA	---	113	113	1	21623-21625
S	21	R21F		nonsyn	AGA	TTT	13	13	1	21623-21625
S	21	R21X		nonsyn	Aga	Tga	12	11	0.916667	21623-21625
S	21	R21X		nonsyn	AGa	TAa	12	1	0.0833333	21623-21625
S	21	R21del1		del	aGa	a-a	6	5	0.833333	21623-21625
S	21	R21del1		del	Aga	-ga	6	1	0.166667	21623-21625
S	21	R21A		nonsyn	AGa	GCa	3	3	1	21623-21625
S	21	R21L		nonsyn	AGa	TTa	3	3	1	21623-21625
S	21	R21V		nonsyn	AGa	GTa	2	2	1	21623-21625
S	21	R21N		nonsyn	aGA	aAC	2	2	1	21623-21625
S	21	R21E		nonsyn	AGa	GAa	1	1	1	21623-21625
S	21	R21del2		del	AGa	--a	1	1	1	21623-21625
S	21	R21M		nonsyn	aGA	aTG	1	1	1	21623-21625

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	21	R21T	aGa	aCa	6655	6655	All	0.001273
S	21	R21I	aGa	aTa	6624	6627	All	0.001267
S	21	R21I	aGA	aTT	3	6627	All	0.000001
S	21	R21T	aGa	aCa	4580	4580	AY.70	0.954962
S	21	R21I	aGa	aTa	1474	1474	AY.4	0.002294
S	21	R21R	agA	agG	963	1072	All	0.000184
S	21	R21R	Aga	Cga	109	1072	All	0.000021
S	21	R21I	aGa	aTa	890	890	B.1.1.279	0.997758
S	21	R21I	aGa	aTa	852	852	B.1.1.7	0.000763
S	21	R21K	aGa	aAa	681	681	All	0.00013
S	21	R21R	agA	agG	460	461	AY.3	0.004575
S	21	R21R	Aga	Cga	1	461	AY.3	0.00001
S	21	R21T	aGa	aCa	449	449	B.1.1.7	0.000402
S	21	R21I	aGa	aTa	384	384	AY.43	0.001701
S	21	R21T	aGa	aCa	334	334	AY.102	0.008856
S	21	R21I	aGa	aTa	314	314	B.1.617.2	0.001182
S	21	R21G	Aga	Gga	301	301	All	0.000058
S	21	R21T	aGa	aCa	233	233	AY.4	0.000363
S	21	R21T	aGa	aCa	233	233	P.1.14	0.011138
S	21	R21I	aGa	aTa	217	217	AY.44	0.001321
S	21	R21I	aGa	aTa	204	204	B.1.1	0.003701
S	21	R21I	aGa	aTa	172	172	B.1.1.365	0.960894
S	21	R21I	aGa	aTa	171	171	B.1.1.237	0.924324
S	21	R21S	agA	agC	88	161	All	0.000017
S	21	R21S	agA	agT	73	161	All	0.000014
S	21	R21I	aGa	aTa	160	160	B.1.1.363	0.958084
S	21	R21T	aGa	aCa	148	148	B.1.617.2	0.000557
S	21	R21I	aGa	aTa	145	145	C.37.1	0.379581
S	21	R21K	aGa	aAa	141	141	AY.25	0.000848
S	21	R21R	agA	agG	118	118	B.1.1.231	0.365325
S	21	R21del	AGA	---	113	113	All	0.000022
S	21	R21I	aGa	aTa	102	102	B.1.2	0.000898
S	21	R21T	aGa	aCa	101	101	AY.4.2	0.002191
S	21	R21I	aGa	aTa	98	98	AY.103	0.000608
S	21	R21I	aGa	aTa	90	90	AY.3	0.000895
S	21	R21K	aGa	aAa	84	84	B.1.177	0.001106
S	21	R21K	aGa	aAa	79	79	B.1.1.7	0.000071
S	21	R21R	agA	agG	75	75	AL.1	0.974026
S	21	R21R	Aga	Cga	69	69	AY.4.5	0.007417
S	21	R21I	aGa	aTa	68	68	AY.98.1	0.003293
S	21	R21R	agA	agG	66	66	B.1.1.7	0.000059
S	21	R21K	aGa	aAa	66	66	B.1.2	0.000581
S	21	R21I	aGa	aTa	60	60	B.1.1.149	0.983607
S	21	R21I	aGa	aTa	57	57	P.1.14	0.002725
S	21	R21R	agA	agG	56	56	AY.110	0.006311
S	21	R21I	aGa	aTa	56	56	AY.39	0.001384
S	21	R21G	Aga	Gga	55	55	AY.3	0.000547
S	21	R21G	Aga	Gga	53	53	AY.103	0.000329
S	21	R21I	aGa	aTa	53	53	B.1	0.000485
S	21	R21I	aGa	aTa	49	49	P.1	0.000772
S	21	R21G	Aga	Gga	47	47	AY.4	0.000073
S	21	R21S	agA	agT	25	47	B.1.1.7	0.000022
S	21	R21S	agA	agC	22	47	B.1.1.7	0.00002
S	21	R21I	aGa	aTa	43	43	B.1.177	0.000566
S	21	R21I	aGa	aTa	40	40	AY.117	0.003381
S	21	R21K	aGa	aAa	39	39	B.1.577	0.026804
S	21	R21I	aGa	aTa	39	39	P.1.10	0.010509
S	21	R21K	aGa	aAa	36	36	AY.4	0.000056
S	21	R21T	aGa	aCa	36	36	AY.43	0.000159
S	21	R21I	aGa	aTa	32	32	AY.120	0.00119
S	21	R21I	aGa	aTa	32	32	B.1.1.360	1
S	21	R21R	agA	agG	30	30	B.39	0.06993
S	21	R21T	aGa	aCa	29	29	B.1.1.358	1
S	21	R21I	aGa	aTa	29	29	R.1	0.00261
S	21	R21I	aGa	aTa	28	28	B.1.1.379	0.875
S	21	R21I	aGa	aTa	27	27	AY.12	0.008534
S	21	R21K	aGa	aAa	27	27	B.1.1	0.00049
S	21	R21T	aGa	aCa	27	27	P.1	0.000425
S	21	R21T	aGa	aCa	26	26	AY.103	0.000161
S	21	R21I	aGa	aTa	26	26	AY.25	0.000156
S	21	R21R	Aga	Cga	22	24	AY.44	0.000134
S	21	R21R	agA	agG	2	24	AY.44	0.000012
S	21	R21T	aGa	aCa	24	24	AY.75	0.001345
S	21	R21K	aGa	aAa	24	24	AY.99.2	0.002212
S	21	R21T	aGa	aCa	24	24	B.1	0.00022
S	21	R21T	aGa	aCa	23	23	AY.44	0.00014
S	21	R21I	aGa	aTa	22	22	AY.5	0.000454
S	21	R21I	aGa	aTa	22	22	B.1.429	0.000518
S	21	R21T	aGa	aCa	22	22	B.1.429	0.000518
S	21	R21I	aGa	aTa	21	21	AY.102	0.000557
S	21	R21T	aGa	aCa	21	21	AY.25	0.000126
S	21	R21T	aGa	aCa	20	20	AY.35	0.004661
S	21	R21K	aGa	aAa	20	20	AY.39.1	0.000792
S	21	R21T	aGa	aCa	20	20	AY.54	0.001907
S	21	R21I	aGa	aTa	20	20	B.1.351	0.000595
S	21	R21I	aGa	aTa	19	19	AY.29	0.0003
S	21	R21T	aGa	aCa	19	19	B.1.1	0.000345
S	21	R21R	agA	agG	19	19	B.1.617.2	0.000072
S	21	R21S	agA	agC	16	18	AY.25	0.000096
S	21	R21S	agA	agT	2	18	AY.25	0.000012
S	21	R21I	aGa	aTa	18	18	AY.46.6	0.0013
S	21	R21del	AGA	---	18	18	B.1.1.7	0.000016
S	21	R21I	aGa	aTa	17	17	AY.26	0.000481
S	21	R21R	agA	agG	17	17	B.1	0.000156
S	21	R21G	Aga	Gga	17	17	C.37	0.001973
S	21	R21K	aGa	aAa	16	16	B.1	0.000147
S	21	R21G	Aga	Gga	16	16	B.1.1.7	0.000014
S	21	R21T	aGa	aCa	16	16	C.37	0.001857
S	21	R21R	agA	agG	15	15	AY.117	0.001268
S	21	R21I	aGa	aTa	15	15	AY.86	0.012448
S	21	R21G	Aga	Gga	15	15	B.1.177.4	0.003166
S	21	R21T	aGa	aCa	15	15	B.1.351	0.000446
S	21	R21I	aGa	aTa	14	14	B.1.526	0.000329
S	21	R21F	AGA	TTT	13	13	All	0.000002
S	21	R21R	agA	agG	13	13	AY.26	0.000368
S	21	R21I	aGa	aTa	13	13	AY.45	0.001582
S	21	R21I	aGa	aTa	13	13	AY.83	0.022414
S	21	R21I	aGa	aTa	13	13	B.1.1.30	1
S	21	R21G	Aga	Gga	13	13	B.1.2	0.000114
S	21	R21X	Aga	Tga	11	12	All	0.000002
S	21	R21X	AGa	TAa	1	12	All	0
S	21	R21S	agA	agC	12	12	AY.23	0.000837
S	21	R21I	aGa	aTa	12	12	AY.61	0.001257
S	21	R21del	AGA	---	12	12	B.1.427	0.000606
S	21	R21K	aGa	aAa	12	12	B.1.617.2	0.000045
S	21	R21I	aGa	aTa	12	12	C.37	0.001393
S	21	R21I	aGa	aTa	11	11	AY.104	0.021825
S	21	R21T	aGa	aCa	11	11	AY.4.2.1	0.001639
S	21	R21I	aGa	aTa	11	11	AY.6	0.000452
S	21	R21F	AGA	TTT	11	11	B.1.1.7	0.00001
S	21	R21I	aGa	aTa	10	10	AY.100	0.00046
S	21	R21S	agA	agT	10	10	AY.34	0.00097
S	21	R21I	aGa	aTa	10	10	B.1.160	0.000312
S	21	R21T	aGa	aCa	10	10	B.1.177	0.000132
S	21	R21I	aGa	aTa	10	10	B.1.177.73	0.005663
S	21	R21I	aGa	aTa	10	10	B.1.195	0.050251
S	21	R21T	aGa	aCa	10	10	B.1.2	0.000088
S	21	R21I	aGa	aTa	10	10	B.1.311	0.002746
S	21	R21T	aGa	aCa	10	10	B.1.637	0.000731
S	21	R21I	aGa	aTa	9	9	AY.121	0.001218
S	21	R21I	aGa	aTa	9	9	AY.33	0.000601
S	21	R21del	AGA	---	9	9	AY.33	0.000601
S	21	R21S	agA	agC	5	9	AY.4	0.000008
S	21	R21S	agA	agT	4	9	AY.4	0.000006
S	21	R21K	aGa	aAa	9	9	B.1.1.253	0.022556
S	21	R21I	aGa	aTa	9	9	B.1.1.519	0.000357
S	21	R21I	aGa	aTa	9	9	B.1.177.21	0.000688
S	21	R21G	Aga	Gga	9	9	B.1.234	0.001187
S	21	R21G	Aga	Gga	9	9	B.1.258	0.000599
S	21	R21T	aGa	aCa	9	9	B.1.617.1	0.001161
S	21	R21R	agA	agG	5	8	AY.25	0.00003
S	21	R21R	Aga	Cga	3	8	AY.25	0.000018
S	21	R21K	aGa	aAa	8	8	AY.44	0.000049
S	21	R21I	aGa	aTa	8	8	AY.47	0.000249
S	21	R21T	aGa	aCa	8	8	B.1.1.317	0.003294
S	21	R21T	aGa	aCa	8	8	P.1.15	0.001859
S	21	R21T	aGa	aCa	8	8	P.2	0.001493
S	21	R21I	aGa	aTa	7	7	AY.119	0.000247
S	21	R21I	aGa	aTa	7	7	AY.14	0.000616
S	21	R21R	agA	agG	6	7	AY.4	0.000009
S	21	R21R	Aga	Cga	1	7	AY.4	0.000002
S	21	R21I	aGa	aTa	7	7	AY.4.2	0.000152
S	21	R21K	aGa	aAa	7	7	AY.41	0.002058
S	21	R21I	aGa	aTa	7	7	AY.42	0.000282
S	21	R21I	aGa	aTa	7	7	AY.46	0.000729
S	21	R21R	agA	agG	7	7	AY.46.1	0.007187
S	21	R21K	aGa	aAa	7	7	AY.75	0.000392
S	21	R21R	agA	agG	7	7	AY.9.2	0.000257
S	21	R21R	agA	agG	7	7	B.1.2	0.000062
S	21	R21I	aGa	aTa	7	7	B.1.258	0.000466
S	21	R21T	aGa	aCa	7	7	B.1.526	0.000165
S	21	R21G	Aga	Gga	7	7	B.1.617.2	0.000026
S	21	R21del1	aGa	a-a	5	6	All	0.000001
S	21	R21del1	Aga	-ga	1	6	All	0
S	21	R21K	aGa	aAa	6	6	AY.103	0.000037
S	21	R21R	agA	agG	6	6	AY.111	0.001099
S	21	R21I	aGa	aTa	6	6	AY.118	0.000376
S	21	R21I	aGa	aTa	6	6	AY.20	0.000233
S	21	R21S	agA	agC	4	6	AY.43	0.000018
S	21	R21S	agA	agT	2	6	AY.43	0.000009
S	21	R21I	aGa	aTa	6	6	AY.9.2	0.00022
S	21	R21G	Aga	Gga	6	6	B.1	0.000055
S	21	R21del	AGA	---	6	6	B.1.1	0.000109
S	21	R21I	aGa	aTa	6	6	B.1.1.222	0.001224
S	21	R21K	aGa	aAa	6	6	B.1.1.50	0.004073
S	21	R21S	agA	agT	5	6	B.1.177	0.000066
S	21	R21S	agA	agC	1	6	B.1.177	0.000013
S	21	R21T	aGa	aCa	6	6	B.1.595	0.001566
S	21	R21I	aGa	aTa	6	6	B.1.617.1	0.000774
S	21	R21T	aGa	aCa	5	5	A.2.5.3	0.051546
S	21	R21del	AGA	---	5	5	AY.103	0.000031
S	21	R21I	aGa	aTa	5	5	AY.113	0.000712
S	21	R21K	aGa	aAa	5	5	AY.3	0.00005
S	21	R21T	aGa	aCa	5	5	AY.3	0.00005
S	21	R21S	agA	agC	3	5	AY.3	0.00003
S	21	R21S	agA	agT	2	5	AY.3	0.00002
S	21	R21T	aGa	aCa	5	5	AY.33	0.000334
S	21	R21del	AGA	---	5	5	AY.44	0.00003
S	21	R21S	agA	agC	5	5	AY.88	0.004421
S	21	R21I	aGa	aTa	5	5	AY.9.1	0.000419
S	21	R21T	aGa	aCa	5	5	AY.99.2	0.000461
S	21	R21R	Aga	Cga	4	5	B.1.177	0.000053
S	21	R21R	agA	agG	1	5	B.1.177	0.000013
S	21	R21I	aGa	aTa	5	5	B.1.232	0.002687
S	21	R21I	aGa	aTa	5	5	B.1.252	0.033113
S	21	R21I	aGa	aTa	5	5	B.1.427	0.000252
S	21	R21T	aGa	aCa	5	5	B.1.466.2	0.001956
S	21	R21K	aGa	aAa	5	5	B.1.609	0.002397
S	21	R21I	aGa	aTa	5	5	C.36.3	0.002836
S	21	R21T	aGa	aCa	5	5	R.1	0.00045
S	21	R21I	aGa	aTa	4	4	AY.101	0.001962
S	21	R21K	aGa	aAa	4	4	AY.102	0.000106
S	21	R21I	aGa	aTa	4	4	AY.116.1	0.001246
S	21	R21del	AGA	---	4	4	AY.120	0.000149
S	21	R21I	aGa	aTa	4	4	AY.23	0.000279
S	21	R21I	aGa	aTa	4	4	AY.36	0.000593
S	21	R21I	aGa	aTa	4	4	AY.39.1	0.000158
S	21	R21del	AGA	---	4	4	AY.4	0.000006
S	21	R21G	Aga	Gga	4	4	AY.43	0.000018
S	21	R21del	AGA	---	4	4	AY.43	0.000018
S	21	R21G	Aga	Gga	4	4	AY.44	0.000024
S	21	R21I	aGA	aTT	3	4	AY.52	0.002443
S	21	R21I	aGa	aTa	1	4	AY.52	0.000814
S	21	R21G	Aga	Gga	4	4	AY.69	0.000747
S	21	R21I	aGa	aTa	4	4	AY.84	0.00175
S	21	R21R	agA	agG	4	4	AY.85	0.001709
S	21	R21T	aGa	aCa	4	4	AY.9.2	0.000147
S	21	R21I	aGa	aTa	4	4	AY.98	0.000316
S	21	R21I	aGa	aTa	4	4	B	0.000511
S	21	R21G	Aga	Gga	4	4	B.1.1	0.000073
S	21	R21T	aGa	aCa	4	4	B.1.1.136	0.085106
S	21	R21R	agA	agG	4	4	B.1.1.434	0.001394
S	21	R21X	Aga	Tga	4	4	B.1.1.7	0.000004
S	21	R21I	aGa	aTa	4	4	B.1.177.12	0.000607
S	21	R21I	aGa	aTa	4	4	B.1.177.60	0.000874
S	21	R21I	aGa	aTa	4	4	B.1.206	0.003263
S	21	R21I	aGa	aTa	4	4	B.1.351.2	0.00121
S	21	R21I	aGa	aTa	4	4	B.1.36	0.000584
S	21	R21T	aGa	aCa	4	4	B.1.427	0.000202
S	21	R21K	aGa	aAa	4	4	B.1.526	0.000094
S	21	R21R	Aga	Cga	3	4	B.1.526	0.000071
S	21	R21R	agA	agG	1	4	B.1.526	0.000024
S	21	R21R	agA	agG	4	4	B.1.596	0.000349
S	21	R21S	agA	agC	2	4	B.1.617.2	0.000008
S	21	R21S	agA	agT	2	4	B.1.617.2	0.000008
S	21	R21K	aGa	aAa	4	4	B.1.637	0.000292
S	21	R21I	aGa	aTa	4	4	C.36	0.003643
S	21	R21I	aGa	aTa	4	4	P.2	0.000747
S	21	R21I	aGa	aTa	4	4	Q.1	0.000505
S	21	R21T	aGa	aCa	3	3	A.2.5.2	0.004717
S	21	R21I	aGa	aTa	3	3	A.23.1	0.002113
S	21	R21T	aGa	aCa	3	3	AH.3	0.011407
S	21	R21A	AGa	GCa	3	3	All	0.000001
S	21	R21L	AGa	TTa	3	3	All	0.000001
S	21	R21I	aGa	aTa	3	3	AY.106	0.001005
S	21	R21R	agA	agG	3	3	AY.106	0.001005
S	21	R21T	aGa	aCa	3	3	AY.114	0.000693
S	21	R21K	aGa	aAa	3	3	AY.120	0.000112
S	21	R21T	aGa	aCa	3	3	AY.20	0.000117
S	21	R21del	AGA	---	3	3	AY.3	0.00003
S	21	R21S	agA	agT	3	3	AY.33	0.0002
S	21	R21A	AGa	GCa	3	3	AY.4	0.000005
S	21	R21T	aGa	aCa	3	3	AY.4.5	0.000322
S	21	R21T	aGa	aCa	3	3	AY.42	0.000121
S	21	R21R	agA	agG	3	3	AY.43	0.000013
S	21	R21S	agA	agC	3	3	AY.45	0.000365
S	21	R21T	aGa	aCa	3	3	AY.47	0.000093
S	21	R21G	Aga	Gga	3	3	AY.5	0.000062
S	21	R21I	aGa	aTa	3	3	AY.7	0.000588
S	21	R21I	aGa	aTa	3	3	AY.7.1	0.000338
S	21	R21I	aGa	aTa	3	3	AY.7.2	0.001678
S	21	R21I	aGa	aTa	3	3	AY.74	0.000347
S	21	R21T	aGa	aCa	3	3	B.1.1.222	0.000612
S	21	R21T	aGa	aCa	3	3	B.1.1.226	0.017442
S	21	R21I	aGa	aTa	3	3	B.1.1.28	0.000934
S	21	R21K	aGa	aAa	3	3	B.1.1.28	0.000934
S	21	R21I	aGa	aTa	3	3	B.1.1.284	0.000322
S	21	R21I	aGa	aTa	3	3	B.1.1.355	0.046154
S	21	R21I	aGa	aTa	3	3	B.1.1.369	0.001339
S	21	R21L	AGa	TTa	3	3	B.1.1.7	0.000003
S	21	R21I	aGa	aTa	3	3	B.1.1.70	0.001023
S	21	R21K	aGa	aAa	3	3	B.1.160	0.000094
S	21	R21T	aGa	aCa	3	3	B.1.160	0.000094
S	21	R21T	aGa	aCa	3	3	B.1.240	0.000647
S	21	R21I	aGa	aTa	3	3	B.1.243	0.000209
S	21	R21R	agA	agG	3	3	B.1.389	0.003006
S	21	R21I	aGa	aTa	3	3	B.1.39	0.011719
S	21	R21del	AGA	---	3	3	B.1.525	0.000339
S	21	R21I	aGa	aTa	3	3	B.1.576	0.00272
S	21	R21K	aGa	aAa	3	3	B.1.582	0.001472
S	21	R21T	aGa	aCa	3	3	B.47	0.061224
S	21	R21T	aGa	aCa	3	3	D.2	0.000225
S	21	R21T	aGa	aCa	3	3	N.5	0.0053
S	21	R21I	aGa	aTa	3	3	N.5	0.0053
S	21	R21del	AGA	---	3	3	P.1	0.000047
S	21	R21I	aGa	aTa	3	3	P.1.12	0.001452
S	21	R21I	aGa	aTa	3	3	P.1.15	0.000697
S	21	R21I	aGa	aTa	3	3	P.1.2	0.003468
S	21	R21I	aGa	aTa	2	2	A	0.000774
S	21	R21I	aGa	aTa	2	2	A.2.5	0.000998
S	21	R21V	AGa	GTa	2	2	All	0
S	21	R21N	aGA	aAC	2	2	All	0
S	21	R21G	Aga	Gga	2	2	AY.102	0.000053
S	21	R21I	aGa	aTa	2	2	AY.109	0.001479
S	21	R21T	aGa	aCa	2	2	AY.117	0.000169
S	21	R21T	aGa	aCa	2	2	AY.120	0.000074
S	21	R21T	aGa	aCa	2	2	AY.13	0.000322
S	21	R21K	aGa	aAa	2	2	AY.20	0.000078
S	21	R21R	agA	agG	2	2	AY.23	0.000139
S	21	R21del	AGA	---	2	2	AY.25	0.000012
S	21	R21T	aGa	aCa	2	2	AY.27	0.000129
S	21	R21I	aGa	aTa	2	2	AY.27	0.000129
S	21	R21I	aGa	aTa	2	2	AY.34	0.000194
S	21	R21I	aGa	aTa	2	2	AY.35	0.000466
S	21	R21T	aGa	aCa	2	2	AY.39	0.000049
S	21	R21K	aGa	aAa	2	2	AY.39	0.000049
S	21	R21T	aGa	aCa	2	2	AY.39.1	0.000079
S	21	R21I	aGa	aTa	2	2	AY.4.2.1	0.000298
S	21	R21T	aGa	aCa	2	2	AY.4.4	0.000818
S	21	R21S	agA	agC	2	2	AY.40	0.001929
S	21	R21G	Aga	Gga	2	2	AY.42	0.00008
S	21	R21T	aGa	aCa	2	2	AY.45	0.000243
S	21	R21K	aGa	aAa	2	2	AY.46	0.000208
S	21	R21S	agA	agT	2	2	AY.5	0.000041
S	21	R21K	aGa	aAa	2	2	AY.5	0.000041
S	21	R21G	Aga	Gga	2	2	AY.51	0.001818
S	21	R21T	aGa	aCa	2	2	AY.53	0.000575
S	21	R21I	aGa	aTa	2	2	AY.54	0.000191
S	21	R21T	aGa	aCa	2	2	AY.61	0.00021
S	21	R21I	aGa	aTa	2	2	AY.68	0.000547
S	21	R21I	aGa	aTa	2	2	AY.75	0.000112
S	21	R21T	aGa	aCa	2	2	AY.75.1	0.000361
S	21	R21I	aGa	aTa	2	2	AY.9	0.000135
S	21	R21T	aGa	aCa	2	2	AY.92	0.000575
S	21	R21I	aGa	aTa	2	2	AY.93	0.000546
S	21	R21I	aGa	aTa	2	2	AY.94	0.000885
S	21	R21K	aGa	aAa	2	2	AY.98	0.000158
S	21	R21R	agA	agG	2	2	AY.98.1	0.000097
S	21	R21G	Aga	Gga	2	2	AY.99.2	0.000184
S	21	R21del	AGA	---	2	2	B.1	0.000018
S	21	R21R	Aga	Cga	1	2	B.1.1	0.000018
S	21	R21S	agA	agC	1	2	B.1.1	0.000018
S	21	R21S	agA	agT	1	2	B.1.1	0.000018
S	21	R21R	agA	agG	1	2	B.1.1	0.000018
S	21	R21T	aGa	aCa	2	2	B.1.1.207	0.002364
S	21	R21R	agA	agG	2	2	B.1.1.216	0.001781
S	21	R21T	aGa	aCa	2	2	B.1.1.311	0.000716
S	21	R21T	aGa	aCa	2	2	B.1.1.326	0.003521
S	21	R21K	aGa	aAa	2	2	B.1.1.326	0.003521
S	21	R21I	aGa	aTa	2	2	B.1.1.371	0.020833
S	21	R21K	aGa	aAa	2	2	B.1.1.519	0.000079
S	21	R21I	aGa	aTa	2	2	B.1.111	0.00235
S	21	R21I	aGa	aTa	2	2	B.1.13	0.004751
S	21	R21K	aGa	aAa	2	2	B.1.160.8	0.002577
S	21	R21T	aGa	aCa	2	2	B.1.177.60	0.000437
S	21	R21I	aGa	aTa	2	2	B.1.210	0.004264
S	21	R21T	aGa	aCa	2	2	B.1.241	0.001623
S	21	R21I	aGa	aTa	2	2	B.1.258.17	0.000208
S	21	R21G	Aga	Gga	2	2	B.1.258.17	0.000208
S	21	R21K	aGa	aAa	2	2	B.1.282	0.029851
S	21	R21K	aGa	aAa	2	2	B.1.298	0.004228
S	21	R21I	aGa	aTa	2	2	B.1.313	0.013158
S	21	R21G	Aga	Gga	2	2	B.1.351	0.000059
S	21	R21I	aGa	aTa	2	2	B.1.351.3	0.001753
S	21	R21K	aGa	aAa	2	2	B.1.36.1	0.002281
S	21	R21I	aGa	aTa	2	2	B.1.36.31	0.003503
S	21	R21I	aGa	aTa	2	2	B.1.398	0.005952
S	21	R21G	Aga	Gga	2	2	B.1.429	0.000047
S	21	R21R	agA	agG	2	2	B.1.439	0.011834
S	21	R21K	aGa	aAa	2	2	B.1.492	0.014085
S	21	R21G	Aga	Gga	2	2	B.1.575	0.000607
S	21	R21G	Aga	Gga	2	2	B.1.596	0.000174
S	21	R21T	aGa	aCa	2	2	B.1.605	0.011905
S	21	R21del	AGA	---	2	2	B.1.617.2	0.000008
S	21	R21I	aGa	aTa	2	2	B.1.617.3	0.00597
S	21	R21I	aGa	aTa	2	2	B.1.621	0.000177
S	21	R21I	aGa	aTa	2	2	B.1.637	0.000146
S	21	R21I	aGa	aTa	2	2	B.6.5	0.153846
S	21	R21K	aGa	aAa	2	2	C.16	0.002121
S	21	R21T	aGa	aCa	2	2	L.3	0.007092
S	21	R21I	aGa	aTa	2	2	P.1.7	0.000639
S	21	R21S	agA	agT	1	2	P.2	0.000187
S	21	R21S	agA	agC	1	2	P.2	0.000187
S	21	R21I	aGa	aTa	2	2	Q.3	0.00029
S	21	R21I	aGa	aTa	2	2	V.1	0.045455
S	21	R21I	aGa	aTa	1	1		0.055556
S	21	R21T	aGa	aCa	1	1	A	0.000387
S	21	R21R	agA	agG	1	1	A.2.4	0.003367
S	21	R21del	AGA	---	1	1	A.2.4	0.003367
S	21	R21T	aGa	aCa	1	1	A.2.5	0.000499
S	21	R21K	aGa	aAa	1	1	A.27	0.001656
S	21	R21N	aGA	aAC	1	1	A.28	0.002646
S	21	R21I	aGa	aTa	1	1	AE.8	0.000489
S	21	R21M	aGA	aTG	1	1	All	0
S	21	R21E	AGa	GAa	1	1	All	0
S	21	R21del2	AGa	--a	1	1	All	0
S	21	R21I	aGa	aTa	1	1	AY.1	0.000396
S	21	R21del	AGA	---	1	1	AY.100	0.000046
S	21	R21S	agA	agC	1	1	AY.100	0.000046
S	21	R21del	AGA	---	1	1	AY.101	0.00049
S	21	R21R	agA	agG	1	1	AY.102	0.000027
S	21	R21S	agA	agT	1	1	AY.102	0.000027
S	21	R21S	agA	agC	1	1	AY.103	0.000006
S	21	R21I	aGa	aTa	1	1	AY.116	0.000287
S	21	R21K	aGa	aAa	1	1	AY.116	0.000287
S	21	R21del	AGA	---	1	1	AY.116.1	0.000311
S	21	R21K	aGa	aAa	1	1	AY.117	0.000085
S	21	R21R	agA	agG	1	1	AY.118	0.000063
S	21	R21S	agA	agC	1	1	AY.118	0.000063
S	21	R21T	aGa	aCa	1	1	AY.119	0.000035
S	21	R21K	aGa	aAa	1	1	AY.119	0.000035
S	21	R21I	aGa	aTa	1	1	AY.13	0.000161
S	21	R21K	aGa	aAa	1	1	AY.13	0.000161
S	21	R21I	aGa	aTa	1	1	AY.16	0.00038
S	21	R21I	aGa	aTa	1	1	AY.16.1	0.00047
S	21	R21I	aGa	aTa	1	1	AY.2	0.000356
S	21	R21del1	aGa	a-a	1	1	AY.23	0.00007
S	21	R21K	aGa	aAa	1	1	AY.23	0.00007
S	21	R21R	agA	agG	1	1	AY.23.1	0.000417
S	21	R21G	Aga	Gga	1	1	AY.25	0.000006
S	21	R21X	Aga	Tga	1	1	AY.26	0.000028
S	21	R21G	Aga	Gga	1	1	AY.26	0.000028
S	21	R21T	aGa	aCa	1	1	AY.26	0.000028
S	21	R21I	aGa	aTa	1	1	AY.28	0.00189
S	21	R21del	AGA	---	1	1	AY.29	0.000016
S	21	R21G	Aga	Gga	1	1	AY.29	0.000016
S	21	R21S	agA	agT	1	1	AY.29	0.000016
S	21	R21G	Aga	Gga	1	1	AY.29.1	0.000221
S	21	R21M	aGA	aTG	1	1	AY.3	0.00001
S	21	R21G	Aga	Gga	1	1	AY.3.1	0.000085
S	21	R21T	aGa	aCa	1	1	AY.30	0.000396
S	21	R21del	AGA	---	1	1	AY.32	0.000532
S	21	R21I	aGa	aTa	1	1	AY.32	0.000532
S	21	R21R	agA	agG	1	1	AY.36	0.000148
S	21	R21del	AGA	---	1	1	AY.39	0.000025
S	21	R21R	agA	agG	1	1	AY.39	0.000025
S	21	R21G	Aga	Gga	1	1	AY.39.1	0.00004
S	21	R21del1	aGa	a-a	1	1	AY.39.1	0.00004
S	21	R21del	AGA	---	1	1	AY.39.1	0.00004
S	21	R21K	aGa	aAa	1	1	AY.4.2	0.000022
S	21	R21R	agA	agG	1	1	AY.4.2	0.000022
S	21	R21K	aGa	aAa	1	1	AY.4.2.1	0.000149
S	21	R21I	aGa	aTa	1	1	AY.4.4	0.000409
S	21	R21I	aGa	aTa	1	1	AY.4.5	0.000107
S	21	R21K	aGa	aAa	1	1	AY.42	0.00004
S	21	R21S	agA	agT	1	1	AY.42	0.00004
S	21	R21del	AGA	---	1	1	AY.42	0.00004
S	21	R21S	agA	agC	1	1	AY.44	0.000006
S	21	R21K	aGa	aAa	1	1	AY.45	0.000122
S	21	R21R	agA	agG	1	1	AY.46	0.000104
S	21	R21I	aGa	aTa	1	1	AY.46.2	0.000635
S	21	R21R	Aga	Cga	1	1	AY.46.6	0.000072
S	21	R21K	aGa	aAa	1	1	AY.47	0.000031
S	21	R21R	agA	agG	1	1	AY.5	0.000021
S	21	R21T	aGa	aCa	1	1	AY.5	0.000021
S	21	R21I	aGa	aTa	1	1	AY.5.2	0.002463
S	21	R21K	aGa	aAa	1	1	AY.5.3	0.000337
S	21	R21I	aGa	aTa	1	1	AY.5.3	0.000337
S	21	R21I	aGa	aTa	1	1	AY.5.4	0.000277
S	21	R21del	AGA	---	1	1	AY.54	0.000095
S	21	R21S	agA	agT	1	1	AY.55	0.000917
S	21	R21I	aGa	aTa	1	1	AY.55	0.000917
S	21	R21I	aGa	aTa	1	1	AY.58	0.000907
S	21	R21I	aGa	aTa	1	1	AY.59	0.00053
S	21	R21T	aGa	aCa	1	1	AY.6	0.000041
S	21	R21del	AGA	---	1	1	AY.6	0.000041
S	21	R21K	aGa	aAa	1	1	AY.61	0.000105
S	21	R21S	agA	agT	1	1	AY.61	0.000105
S	21	R21I	aGa	aTa	1	1	AY.63	0.000387
S	21	R21del	AGA	---	1	1	AY.68	0.000274
S	21	R21I	aGa	aTa	1	1	AY.69	0.000187
S	21	R21I	aGa	aTa	1	1	AY.70	0.000209
S	21	R21R	agA	agG	1	1	AY.71	0.000475
S	21	R21del	AGA	---	1	1	AY.75.1	0.00018
S	21	R21I	aGa	aTa	1	1	AY.78	0.001541
S	21	R21I	aGa	aTa	1	1	AY.82	0.001357
S	21	R21R	agA	agG	1	1	AY.82	0.001357
S	21	R21S	agA	agC	1	1	AY.83	0.001724
S	21	R21I	aGa	aTa	1	1	AY.88	0.000884
S	21	R21S	agA	agT	1	1	AY.9	0.000068
S	21	R21T	aGa	aCa	1	1	AY.9.1	0.000084
S	21	R21del	AGA	---	1	1	AY.9.2	0.000037
S	21	R21T	aGa	aCa	1	1	AY.90	0.000684
S	21	R21I	aGa	aTa	1	1	AY.90	0.000684
S	21	R21I	aGa	aTa	1	1	AY.92	0.000287
S	21	R21I	aGa	aTa	1	1	AY.96	0.002075
S	21	R21del	AGA	---	1	1	AY.98	0.000079
S	21	R21G	Aga	Gga	1	1	AY.98.1	0.000048
S	21	R21T	aGa	aCa	1	1	AY.98.1	0.000048
S	21	R21I	aGa	aTa	1	1	AY.99	0.001049
S	21	R21K	aGa	aAa	1	1	AZ.3	0.00152
S	21	R21R	agA	agG	1	1	B	0.000128
S	21	R21T	aGa	aCa	1	1	B	0.000128
S	21	R21X	Aga	Tga	1	1	B	0.000128
S	21	R21K	aGa	aAa	1	1	B	0.000128
S	21	R21S	agA	agC	1	1	B.1	0.000009
S	21	R21del1	aGa	a-a	1	1	B.1.1	0.000018
S	21	R21X	Aga	Tga	1	1	B.1.1	0.000018
S	21	R21T	aGa	aCa	1	1	B.1.1.1	0.000327
S	21	R21K	aGa	aAa	1	1	B.1.1.1	0.000327
S	21	R21I	aGa	aTa	1	1	B.1.1.101	0.01
S	21	R21I	aGa	aTa	1	1	B.1.1.111	0.014706
S	21	R21T	aGa	aCa	1	1	B.1.1.133	0.008475
S	21	R21I	aGa	aTa	1	1	B.1.1.176	0.000439
S	21	R21G	Aga	Gga	1	1	B.1.1.214	0.000055
S	21	R21T	aGa	aCa	1	1	B.1.1.216	0.00089
S	21	R21R	agA	agG	1	1	B.1.1.220	0.001859
S	21	R21G	Aga	Gga	1	1	B.1.1.222	0.000204
S	21	R21R	Aga	Cga	1	1	B.1.1.222	0.000204
S	21	R21I	aGa	aTa	1	1	B.1.1.226	0.005814
S	21	R21T	aGa	aCa	1	1	B.1.1.232	0.001815
S	21	R21K	aGa	aAa	1	1	B.1.1.25	0.000569
S	21	R21T	aGa	aCa	1	1	B.1.1.277	0.000759
S	21	R21I	aGa	aTa	1	1	B.1.1.277	0.000759
S	21	R21I	aGa	aTa	1	1	B.1.1.29	0.010309
S	21	R21I	aGa	aTa	1	1	B.1.1.294	0.001266
S	21	R21T	aGa	aCa	1	1	B.1.1.302	0.002075
S	21	R21I	aGa	aTa	1	1	B.1.1.306	0.000438
S	21	R21del2	AGa	--a	1	1	B.1.1.306	0.000438
S	21	R21del	AGA	---	1	1	B.1.1.306	0.000438
S	21	R21I	aGa	aTa	1	1	B.1.1.307	0.002532
S	21	R21del	AGA	---	1	1	B.1.1.315	0.008475
S	21	R21I	aGa	aTa	1	1	B.1.1.318	0.000302
S	21	R21I	aGa	aTa	1	1	B.1.1.326	0.001761
S	21	R21I	aGa	aTa	1	1	B.1.1.33	0.000421
S	21	R21X	Aga	Tga	1	1	B.1.1.331	0.011628
S	21	R21I	aGa	aTa	1	1	B.1.1.37	0.000193
S	21	R21T	aGa	aCa	1	1	B.1.1.370	0.012658
S	21	R21I	aGa	aTa	1	1	B.1.1.378	0.007299
S	21	R21del	AGA	---	1	1	B.1.1.401	0.066667
S	21	R21I	aGa	aTa	1	1	B.1.1.406	0.006494
S	21	R21T	aGa	aCa	1	1	B.1.1.411	0.014706
S	21	R21R	Aga	Cga	1	1	B.1.1.416	0.000905
S	21	R21I	aGa	aTa	1	1	B.1.1.416	0.000905
S	21	R21T	aGa	aCa	1	1	B.1.1.442	0.018519
S	21	R21del	AGA	---	1	1	B.1.1.46	0.004367
S	21	R21R	agA	agG	1	1	B.1.1.464	0.001473
S	21	R21T	aGa	aCa	1	1	B.1.1.48	0.002874
S	21	R21R	Aga	Cga	1	1	B.1.1.486	0.001577
S	21	R21I	aGa	aTa	1	1	B.1.1.51	0.001718
S	21	R21T	aGa	aCa	1	1	B.1.1.519	0.00004
S	21	R21S	agA	agT	1	1	B.1.1.519	0.00004
S	21	R21del1	aGa	a-a	1	1	B.1.1.7	0.000001
S	21	R21V	AGa	GTa	1	1	B.1.1.7	0.000001
S	21	R21S	agA	agC	1	1	B.1.1.70	0.000341
S	21	R21K	aGa	aAa	1	1	B.1.1.83	0.00271
S	21	R21T	aGa	aCa	1	1	B.1.111	0.001175
S	21	R21K	aGa	aAa	1	1	B.1.13	0.002375
S	21	R21G	Aga	Gga	1	1	B.1.139	0.000733
S	21	R21S	agA	agC	1	1	B.1.142	0.002899
S	21	R21I	aGa	aTa	1	1	B.1.142	0.002899
S	21	R21I	aGa	aTa	1	1	B.1.147	0.000756
S	21	R21S	agA	agT	1	1	B.1.160	0.000031
S	21	R21R	agA	agG	1	1	B.1.160	0.000031
S	21	R21X	Aga	Tga	1	1	B.1.160	0.000031
S	21	R21G	Aga	Gga	1	1	B.1.177	0.000013
S	21	R21I	aGa	aTa	1	1	B.1.177.17	0.000821
S	21	R21del1	aGa	a-a	1	1	B.1.177.21	0.000076
S	21	R21R	agA	agG	1	1	B.1.177.24	0.001295
S	21	R21I	aGa	aTa	1	1	B.1.177.56	0.000668
S	21	R21K	aGa	aAa	1	1	B.1.177.57	0.000281
S	21	R21del	AGA	---	1	1	B.1.177.6	0.000977
S	21	R21del	AGA	---	1	1	B.1.177.68	0.015152
S	21	R21T	aGa	aCa	1	1	B.1.177.75	0.001041
S	21	R21S	agA	agC	1	1	B.1.177.75	0.001041
S	21	R21I	aGa	aTa	1	1	B.1.177.8	0.000752
S	21	R21K	aGa	aAa	1	1	B.1.177.81	0.000189
S	21	R21R	agA	agG	1	1	B.1.177.81	0.000189
S	21	R21I	aGa	aTa	1	1	B.1.177.82	0.000477
S	21	R21del	AGA	---	1	1	B.1.177.83	0.001481
S	21	R21I	aGa	aTa	1	1	B.1.177.9	0.001332
S	21	R21del	AGA	---	1	1	B.1.2	0.000009
S	21	R21V	AGa	GTa	1	1	B.1.2	0.000009
S	21	R21S	agA	agT	1	1	B.1.2	0.000009
S	21	R21X	Aga	Tga	1	1	B.1.206	0.000816
S	21	R21T	aGa	aCa	1	1	B.1.206	0.000816
S	21	R21I	aGa	aTa	1	1	B.1.221	0.000071
S	21	R21del	AGA	---	1	1	B.1.221	0.000071
S	21	R21I	aGa	aTa	1	1	B.1.221.2	0.004016
S	21	R21T	aGa	aCa	1	1	B.1.232	0.000537
S	21	R21K	aGa	aAa	1	1	B.1.243	0.00007
S	21	R21S	agA	agT	1	1	B.1.243	0.00007
S	21	R21T	aGa	aCa	1	1	B.1.243	0.00007
S	21	R21T	aGa	aCa	1	1	B.1.258	0.000067
S	21	R21K	aGa	aAa	1	1	B.1.258	0.000067
S	21	R21T	aGa	aCa	1	1	B.1.258.3	0.001675
S	21	R21I	aGa	aTa	1	1	B.1.258.7	0.001912
S	21	R21T	aGa	aCa	1	1	B.1.260	0.003344
S	21	R21I	aGa	aTa	1	1	B.1.279	0.000514
S	21	R21I	aGa	aTa	1	1	B.1.298	0.002114
S	21	R21I	aGa	aTa	1	1	B.1.301	0.005917
S	21	R21T	aGa	aCa	1	1	B.1.311	0.000275
S	21	R21I	aGa	aTa	1	1	B.1.315	0.006061
S	21	R21I	aGa	aTa	1	1	B.1.336	0.002439
S	21	R21I	aGa	aTa	1	1	B.1.349	0.000715
S	21	R21del	AGA	---	1	1	B.1.351	0.00003
S	21	R21del	AGA	---	1	1	B.1.36	0.000146
S	21	R21T	aGa	aCa	1	1	B.1.36	0.000146
S	21	R21G	Aga	Gga	1	1	B.1.36.10	0.004785
S	21	R21I	aGa	aTa	1	1	B.1.36.16	0.001425
S	21	R21I	aGa	aTa	1	1	B.1.36.17	0.000494
S	21	R21I	aGa	aTa	1	1	B.1.36.22	0.001208
S	21	R21T	aGa	aCa	1	1	B.1.36.27	0.000763
S	21	R21G	Aga	Gga	1	1	B.1.36.29	0.000517
S	21	R21K	aGa	aAa	1	1	B.1.36.8	0.001
S	21	R21I	aGa	aTa	1	1	B.1.361	0.001289
S	21	R21T	aGa	aCa	1	1	B.1.369	0.000285
S	21	R21I	aGa	aTa	1	1	B.1.369	0.000285
S	21	R21K	aGa	aAa	1	1	B.1.391	0.001127
S	21	R21I	aGa	aTa	1	1	B.1.391	0.001127
S	21	R21T	aGa	aCa	1	1	B.1.393	0.028571
S	21	R21I	aGa	aTa	1	1	B.1.396	0.000706
S	21	R21I	aGa	aTa	1	1	B.1.413	0.004255
S	21	R21G	Aga	Gga	1	1	B.1.416.1	0.001563
S	21	R21S	agA	agC	1	1	B.1.424	0.008065
S	21	R21K	aGa	aAa	1	1	B.1.427	0.00005
S	21	R21N	aGA	aAC	1	1	B.1.429	0.000024
S	21	R21K	aGa	aAa	1	1	B.1.429	0.000024
S	21	R21del	AGA	---	1	1	B.1.429	0.000024
S	21	R21S	agA	agC	1	1	B.1.433	0.003195
S	21	R21T	aGa	aCa	1	1	B.1.438.1	0.000107
S	21	R21I	aGa	aTa	1	1	B.1.438.1	0.000107
S	21	R21K	aGa	aAa	1	1	B.1.438.1	0.000107
S	21	R21del	AGA	---	1	1	B.1.497	0.000315
S	21	R21I	aGa	aTa	1	1	B.1.497	0.000315
S	21	R21X	Aga	Tga	1	1	B.1.517	0.000427
S	21	R21I	aGa	aTa	1	1	B.1.517	0.000427
S	21	R21I	aGa	aTa	1	1	B.1.524	0.001406
S	21	R21del1	Aga	-ga	1	1	B.1.525	0.000113
S	21	R21del	AGA	---	1	1	B.1.526	0.000024
S	21	R21S	agA	agT	1	1	B.1.526	0.000024
S	21	R21I	aGa	aTa	1	1	B.1.533	0.009615
S	21	R21I	aGa	aTa	1	1	B.1.564	0.000426
S	21	R21I	aGa	aTa	1	1	B.1.565	0.00081
S	21	R21G	Aga	Gga	1	1	B.1.568	0.001111
S	21	R21T	aGa	aCa	1	1	B.1.568	0.001111
S	21	R21T	aGa	aCa	1	1	B.1.575	0.000303
S	21	R21S	agA	agT	1	1	B.1.575.1	0.002439
S	21	R21R	agA	agG	1	1	B.1.577	0.000687
S	21	R21G	Aga	Gga	1	1	B.1.588	0.00091
S	21	R21I	aGa	aTa	1	1	B.1.596	0.000087
S	21	R21R	agA	agG	1	1	B.1.609	0.000479
S	21	R21X	AGa	TAa	1	1	B.1.609	0.000479
S	21	R21K	aGa	aAa	1	1	B.1.612	0.002653
S	21	R21F	AGA	TTT	1	1	B.1.617.2	0.000004
S	21	R21I	aGa	aTa	1	1	B.1.619	0.000871
S	21	R21del	AGA	---	1	1	B.1.620	0.000946
S	21	R21I	aGa	aTa	1	1	B.1.620	0.000946
S	21	R21K	aGa	aAa	1	1	B.1.621	0.000089
S	21	R21I	aGa	aTa	1	1	B.1.623	0.000536
S	21	R21R	agA	agG	1	1	B.3	0.000831
S	21	R21I	aGa	aTa	1	1	B.3.1	0.001658
S	21	R21T	aGa	aCa	1	1	B.40	0.000364
S	21	R21K	aGa	aAa	1	1	B.45	0.003831
S	21	R21del	AGA	---	1	1	B.61	0.005747
S	21	R21T	aGa	aCa	1	1	C.16	0.00106
S	21	R21R	agA	agG	1	1	C.16	0.00106
S	21	R21T	aGa	aCa	1	1	C.31	0.017857
S	21	R21F	AGA	TTT	1	1	C.36.3	0.000567
S	21	R21S	agA	agT	1	1	D.2	0.000075
S	21	R21G	Aga	Gga	1	1	D.2	0.000075
S	21	R21E	AGa	GAa	1	1	D.2	0.000075
S	21	R21K	aGa	aAa	1	1	D.2	0.000075
S	21	R21K	aGa	aAa	1	1	P.1	0.000016
S	21	R21S	agA	agT	1	1	P.1	0.000016
S	21	R21I	aGa	aTa	1	1	P.1.10.2	0.041667
S	21	R21T	aGa	aCa	1	1	P.1.12	0.000484
S	21	R21I	aGa	aTa	1	1	P.1.16	0.000374
S	21	R21I	aGa	aTa	1	1	P.1.17	0.000162
S	21	R21R	Aga	Cga	1	1	P.1.4	0.000977
S	21	R21T	aGa	aCa	1	1	P.1.7	0.000319
S	21	R21K	aGa	aAa	1	1	P.2	0.000187
S	21	R21R	agA	agG	1	1	P.2	0.000187
S	21	R21T	aGa	aCa	1	1	Q.1	0.000126
S	21	R21T	aGa	aCa	1	1	Q.3	0.000145
S	21	R21I	aGa	aTa	1	1	Q.7	0.001111
S	21	R21T	aGa	aCa	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.