CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 200

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S200Y200YsyntaTtaC50455045122160-22162
S200Y200deldelTAT---257257122160-22162
S200Y200HnonsynTatCat182182122160-22162
S200Y200CnonsyntAttGt136136122160-22162
S200Y200FnonsyntAttTt1515122160-22162
S200Y200del1deltaTta-1212122160-22162
S200Y200XnonsyntaTtaA1170.63636422160-22162
S200Y200XnonsyntaTtaG1140.36363622160-22162
S200Y200SnonsyntAttCt66122160-22162
S200Y200del2delTAt--t44122160-22162
S200Y200DnonsynTatGat44122160-22162
S200Y200NnonsynTatAat22122160-22162
S200Y200LnonsyntATtTA22122160-22162
S200Y200InonsynTAtATt11122160-22162
S200Y200GnonsynTAtGGt11122160-22162

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S200Y200YtaTtaC50455045All0.000965
S200Y200YtaTtaC44684468B.1.2400.963139
S200Y200delTAT---257257All0.000049
S200Y200HTatCat182182All0.000035
S200Y200CtAttGt136136All0.000026
S200Y200YtaTtaC115115B.10.001053
S200Y200YtaTtaC7878B.1.1.70.00007
S200Y200delTAT---7676B.1.1.70.000068
S200Y200YtaTtaC7373B.1.5501
S200Y200CtAttGt5656B.1.1.70.00005
S200Y200YtaTtaC4949AY.40.000076
S200Y200YtaTtaC4040B.1.240.11
S200Y200HTatCat3838B.1.617.20.000143
S200Y200YtaTtaC3333B.1.240.21
S200Y200YtaTtaC2525B.1.20.00022
S200Y200YtaTtaC2323B.1.6120.061008
S200Y200YtaTtaC2020B.1.2210.001421
S200Y200delTAT---1818AY.430.00008
S200Y200YtaTtaC1818B.1.1690.268657
S200Y200HTatCat1717B.1.1.70.000015
S200Y200FtAttTt1515All0.000003
S200Y200YtaTtaC1313AY.1030.000081
S200Y200delTAT---1313B.10.000119
S200Y200del1taTta-1212All0.000002
S200Y200delTAT---1212AY.40.000019
S200Y200HTatCat1212AY.560.019262
S200Y200XtaTtaA711All0.000001
S200Y200XtaTtaG411All0.000001
S200Y200HTatCat1111AY.910.008035
S200Y200delTAT---1111B.1.1770.000145
S200Y200YtaTtaC1111B.1.617.20.000041
S200Y200HTatCat99AY.430.00004
S200Y200CtAttGt99B.1.2430.000626
S200Y200delTAT---99P.1.150.002091
S200Y200HTatCat88AY.40.000012
S200Y200YtaTtaC88B.1.5960.000697
S200Y200HTatCat77AY.1100.000789
S200Y200YtaTtaC77AY.250.000042
S200Y200CtAttGt77AY.40.000011
S200Y200CtAttGt77AY.440.000043
S200Y200HTatCat77B.1.2340.000924
S200Y200YtaTtaC77B.1.5260.000165
S200Y200delTAT---77B.1.617.20.000026
S200Y200delTAT---77P.10.00011
S200Y200StAttCt66All0.000001
S200Y200HTatCat66AY.30.00006
S200Y200delTAT---66AY.4.50.000645
S200Y200YtaTtaC66AY.430.000027
S200Y200CtAttGt66B.1.617.20.000023
S200Y200delTAT---66C.370.000696
S200Y200CtAttGt55AY.1030.000031
S200Y200delTAT---55AY.250.00003
S200Y200YtaTtaC55AY.4.20.000108
S200Y200delTAT---55AY.440.00003
S200Y200CtAttGt55AY.46.60.000361
S200Y200HTatCat55B.1.4700.007022
S200Y200HTatCat55P.10.000079
S200Y200DTatGat44All0.000001
S200Y200del2TAt--t44All0.000001
S200Y200HTatCat44AY.1030.000025
S200Y200delTAT---44AY.1200.000149
S200Y200HTatCat44AY.250.000024
S200Y200CtAttGt44AY.4.20.000087
S200Y200HTatCat44B.1.20.000035
S200Y200CtAttGt44B.1.20.000035
S200Y200HTatCat44B.1.3240.006421
S200Y200YtaTtaC33AY.1020.00008
S200Y200CtAttGt33AY.1100.000338
S200Y200delTAT---33AY.160.001139
S200Y200CtAttGt33AY.240.001293
S200Y200delTAT---33AY.30.00003
S200Y200delTAT---33AY.390.000074
S200Y200CtAttGt33AY.430.000013
S200Y200HTatCat33AY.440.000018
S200Y200delTAT---33AY.610.000314
S200Y200CtAttGt33B.10.000027
S200Y200YtaTtaC33B.1.10.000054
S200Y200delTAT---33B.1.10.000054
S200Y200HTatCat33B.1.1770.00004
S200Y200YtaTtaC33B.1.2580.0002
S200Y200YtaTtaC33P.1.170.000485
S200Y200YtaTtaC220.111111
S200Y200LtATtTA22All0
S200Y200NTatAat22All0
S200Y200YtaTtaC22AY.1190.000071
S200Y200HTatCat22AY.230.000139
S200Y200HTatCat22AY.260.000057
S200Y200CtAttGt22AY.30.00002
S200Y200delTAT---22AY.39.10.000079
S200Y200FtAttTt22AY.40.000003
S200Y200HTatCat22AY.420.00008
S200Y200delTAT---22AY.46.20.001271
S200Y200delTAT---22AY.60.000082
S200Y200HTatCat22AY.750.000112
S200Y200delTAT---22AY.980.000158
S200Y200FtAttTt22B.10.000018
S200Y200HTatCat22B.10.000018
S200Y200XtaTtaG12B.10.000009
S200Y200XtaTtaA12B.10.000009
S200Y200del1taTta-22B.1.10.000036
S200Y200del2TAt--t22B.1.10.000036
S200Y200HTatCat22B.1.1.10.000653
S200Y200StAttCt22B.1.1.70.000002
S200Y200XtaTtaA12B.1.1.70.000001
S200Y200XtaTtaG12B.1.1.70.000001
S200Y200delTAT---22B.1.1600.000062
S200Y200HTatCat22B.1.177.70.00033
S200Y200CtAttGt22B.1.177.90.002663
S200Y200delTAT---22B.1.20.000018
S200Y200delTAT---22B.1.2210.000142
S200Y200YtaTtaC22B.1.2430.000139
S200Y200delTAT---22B.1.6210.000177
S200Y200CtAttGt22B.1.6340.006849
S200Y200HTatCat22D.20.00015
S200Y200FtAttTt22D.20.00015
S200Y200YtaTtaC22P.10.000032
S200Y200YtaTtaC22P.1.150.000465
S200Y200CtAttGt110.055556
S200Y200del1taTta-11A0.000387
S200Y200XtaTtaG11A.20.000662
S200Y200del1taTta-11A.2.50.000499
S200Y200delTAT---11A.2.50.000499
S200Y200GTAtGGt11All0
S200Y200ITAtATt11All0
S200Y200CtAttGt11AY.10.000396
S200Y200delTAT---11AY.1000.000046
S200Y200HTatCat11AY.1000.000046
S200Y200delTAT---11AY.1010.00049
S200Y200delTAT---11AY.1020.000027
S200Y200delTAT---11AY.1030.000006
S200Y200FtAttTt11AY.1030.000006
S200Y200del1taTta-11AY.1190.000035
S200Y200HTatCat11AY.1200.000037
S200Y200delTAT---11AY.140.000088
S200Y200HTatCat11AY.200.000039
S200Y200YtaTtaC11AY.230.00007
S200Y200delTAT---11AY.23.10.000417
S200Y200delTAT---11AY.240.000431
S200Y200FtAttTt11AY.250.000006
S200Y200del2TAt--t11AY.250.000006
S200Y200StAttCt11AY.250.000006
S200Y200delTAT---11AY.290.000016
S200Y200YtaTtaC11AY.350.000233
S200Y200CtAttGt11AY.360.000148
S200Y200YtaTtaC11AY.380.000499
S200Y200CtAttGt11AY.390.000025
S200Y200StAttCt11AY.39.10.00004
S200Y200FtAttTt11AY.39.10.00004
S200Y200DTatGat11AY.40.000002
S200Y200GTAtGGt11AY.40.000002
S200Y200FtAttTt11AY.4.50.000107
S200Y200FtAttTt11AY.410.000294
S200Y200YtaTtaC11AY.410.000294
S200Y200HTatCat11AY.460.000104
S200Y200NTatAat11AY.460.000104
S200Y200delTAT---11AY.470.000031
S200Y200XtaTtaA11AY.50.000021
S200Y200delTAT---11AY.50.000021
S200Y200HTatCat11AY.50.000021
S200Y200YtaTtaC11AY.590.00053
S200Y200HTatCat11AY.60.000041
S200Y200HTatCat11AY.690.000187
S200Y200delTAT---11AY.7.10.000113
S200Y200HTatCat11AY.740.000116
S200Y200CtAttGt11AY.750.000056
S200Y200HTatCat11AY.760.004831
S200Y200XtaTtaG11AY.9.10.000084
S200Y200HTatCat11AY.9.20.000037
S200Y200delTAT---11AY.910.00073
S200Y200delTAT---11AY.960.002075
S200Y200YtaTtaC11AY.980.000079
S200Y200YtaTtaC11AY.98.10.000048
S200Y200delTAT---11AY.99.10.001553
S200Y200CtAttGt11AY.99.20.000092
S200Y200DTatGat11B0.000128
S200Y200delTAT---11B0.000128
S200Y200del1taTta-11B.10.000009
S200Y200ITAtATt11B.10.000009
S200Y200NTatAat11B.10.000009
S200Y200CtAttGt11B.1.10.000018
S200Y200XtaTtaA11B.1.10.000018
S200Y200delTAT---11B.1.1.100.001115
S200Y200YtaTtaC11B.1.1.1610.003534
S200Y200CtAttGt11B.1.1.2220.000204
S200Y200delTAT---11B.1.1.2840.000107
S200Y200YtaTtaC11B.1.1.3060.000438
S200Y200delTAT---11B.1.1.3110.000358
S200Y200delTAT---11B.1.1.3150.008475
S200Y200YtaTtaC11B.1.1.4870.005587
S200Y200FtAttTt11B.1.1.70.000001
S200Y200del1taTta-11B.1.1.70.000001
S200Y200delTAT---11B.1.1.700.000341
S200Y200delTAT---11B.1.1400.018868
S200Y200YtaTtaC11B.1.1570.002985
S200Y200del1taTta-11B.1.1600.000031
S200Y200delTAT---11B.1.160.230.004831
S200Y200YtaTtaC11B.1.1770.000013
S200Y200delTAT---11B.1.177.100.000878
S200Y200delTAT---11B.1.177.160.000664
S200Y200delTAT---11B.1.177.180.00116
S200Y200XtaTtaA11B.1.177.210.000076
S200Y200delTAT---11B.1.177.540.000606
S200Y200delTAT---11B.1.177.60.000977
S200Y200delTAT---11B.1.177.620.001192
S200Y200delTAT---11B.1.177.690.001484
S200Y200YtaTtaC11B.1.177.70.000165
S200Y200YtaTtaC11B.1.177.730.000566
S200Y200YtaTtaC11B.1.1880.016667
S200Y200HTatCat11B.1.1900.01
S200Y200FtAttTt11B.1.20.000009
S200Y200del1taTta-11B.1.20.000009
S200Y200del2TAt--t11B.1.2060.000816
S200Y200YtaTtaC11B.1.2140.003663
S200Y200delTAT---11B.1.2180.005155
S200Y200DTatGat11B.1.2210.000071
S200Y200HTatCat11B.1.2320.000537
S200Y200CtAttGt11B.1.2340.000132
S200Y200delTAT---11B.1.2390.001221
S200Y200StAttCt11B.1.2430.00007
S200Y200delTAT---11B.1.2580.000067
S200Y200delTAT---11B.1.258.30.001675
S200Y200YtaTtaC11B.1.3090.047619
S200Y200YtaTtaC11B.1.3510.00003
S200Y200HTatCat11B.1.360.000146
S200Y200YtaTtaC11B.1.360.000146
S200Y200delTAT---11B.1.36.180.00042
S200Y200HTatCat11B.1.36.260.002857
S200Y200DTatGat11B.1.36.350.002604
S200Y200YtaTtaC11B.1.3690.000285
S200Y200FtAttTt11B.1.3910.001127
S200Y200XtaTtaA11B.1.3910.001127
S200Y200LtATtTA11B.1.3910.001127
S200Y200delTAT---11B.1.4090.000781
S200Y200HTatCat11B.1.4090.000781
S200Y200HTatCat11B.1.4290.000024
S200Y200delTAT---11B.1.438.10.000107
S200Y200HTatCat11B.1.4560.003268
S200Y200delTAT---11B.1.5030.002488
S200Y200delTAT---11B.1.5610.000397
S200Y200del1taTta-11B.1.5610.000397
S200Y200YtaTtaC11B.1.5820.000491
S200Y200delTAT---11B.1.5950.000261
S200Y200CtAttGt11B.1.5950.000261
S200Y200CtAttGt11B.1.5960.000087
S200Y200del1taTta-11B.1.5960.000087
S200Y200delTAT---11B.1.617.10.000129
S200Y200FtAttTt11B.1.617.20.000004
S200Y200LtATtTA11B.1.617.20.000004
S200Y200XtaTtaA11B.1.617.20.000004
S200Y200delTAT---11B.1.6200.000946
S200Y200delTAT---11B.1.6300.005236
S200Y200YtaTtaC11B.1.6300.005236
S200Y200del1taTta-11B.1.6370.000073
S200Y200delTAT---11B.1.6380.052632
S200Y200CtAttGt11B.6.60.000889
S200Y200YtaTtaC11C.36.30.000567
S200Y200CtAttGt11D.20.000075
S200Y200delTAT---11D.20.000075
S200Y200YtaTtaC11D.20.000075
S200Y200StAttCt11P.10.000016
S200Y200delTAT---11P.1.10.000318
S200Y200HTatCat11P.20.000187
S200Y200CtAttGt11Q.10.000126
S200Y200HTatCat11Q.80.000165
S200Y200CtAttGt11Q.80.000165
S200Y200delTAT---11U.30.003861