CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 20 | T20N | nonsyn | aCc | aAc | 112479 | 112270 | 0.998142 | 21620-21622 | |
S | 20 | T20N | nonsyn | aCC | aAT | 112479 | 209 | 0.00185812 | 21620-21622 | |
S | 20 | T20T | syn | acC | acT | 32402 | 30753 | 0.949108 | 21620-21622 | |
S | 20 | T20T | syn | acC | acA | 32402 | 1544 | 0.0476514 | 21620-21622 | |
S | 20 | T20T | syn | acC | acG | 32402 | 105 | 0.00324054 | 21620-21622 | |
S | 20 | T20I | nonsyn | aCc | aTc | 10994 | 10947 | 0.995725 | 21620-21622 | |
S | 20 | T20I | nonsyn | aCC | aTT | 10994 | 44 | 0.00400218 | 21620-21622 | |
S | 20 | T20I | nonsyn | aCC | aTA | 10994 | 3 | 0.000272876 | 21620-21622 | |
S | 20 | T20A | nonsyn | Acc | Gcc | 323 | 322 | 0.996904 | 21620-21622 | |
S | 20 | T20A | nonsyn | AcC | GcT | 323 | 1 | 0.00309598 | 21620-21622 | |
S | 20 | T20P | nonsyn | Acc | Ccc | 190 | 189 | 0.994737 | 21620-21622 | |
S | 20 | T20P | nonsyn | AcC | CcA | 190 | 1 | 0.00526316 | 21620-21622 | |
S | 20 | T20del | del | ACC | --- | 151 | 151 | 1 | 21620-21622 | |
S | 20 | T20S | nonsyn | aCc | aGc | 135 | 117 | 0.866667 | 21620-21622 | |
S | 20 | T20S | nonsyn | Acc | Tcc | 135 | 17 | 0.125926 | 21620-21622 | |
S | 20 | T20S | nonsyn | AcC | TcT | 135 | 1 | 0.00740741 | 21620-21622 | |
S | 20 | T20K | nonsyn | aCC | aAA | 15 | 15 | 1 | 21620-21622 | |
S | 20 | T20F | nonsyn | ACc | TTc | 6 | 5 | 0.833333 | 21620-21622 | |
S | 20 | T20F | nonsyn | ACC | TTT | 6 | 1 | 0.166667 | 21620-21622 | |
S | 20 | T20del1 | del | aCc | a-c | 4 | 3 | 0.75 | 21620-21622 | |
S | 20 | T20del1 | del | ACc | G-c | 4 | 1 | 0.25 | 21620-21622 | |
S | 20 | T20V | nonsyn | ACc | GTc | 1 | 1 | 1 | 21620-21622 | |
S | 20 | T20H | nonsyn | ACc | CAc | 1 | 1 | 1 | 21620-21622 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 20 | T20N | aCc | aAc | 112270 | 112479 | All | 0.021473 |
S | 20 | T20N | aCC | aAT | 209 | 112479 | All | 0.00004 |
S | 20 | T20N | aCc | aAc | 61403 | 61537 | P.1 | 0.967342 |
S | 20 | T20N | aCC | aAT | 134 | 61537 | P.1 | 0.002111 |
S | 20 | T20T | acC | acT | 30753 | 32402 | All | 0.005882 |
S | 20 | T20T | acC | acA | 1544 | 32402 | All | 0.000295 |
S | 20 | T20T | acC | acG | 105 | 32402 | All | 0.00002 |
S | 20 | T20N | aCc | aAc | 20820 | 20830 | P.1.14 | 0.99522 |
S | 20 | T20N | aCC | aAT | 10 | 20830 | P.1.14 | 0.000478 |
S | 20 | T20T | acC | acT | 15999 | 15999 | AY.75 | 0.896303 |
S | 20 | T20I | aCc | aTc | 10947 | 10994 | All | 0.002094 |
S | 20 | T20I | aCC | aTT | 44 | 10994 | All | 0.000008 |
S | 20 | T20I | aCC | aTA | 3 | 10994 | All | 0.000001 |
S | 20 | T20N | aCc | aAc | 6068 | 6069 | P.1.17 | 0.981559 |
S | 20 | T20N | aCC | aAT | 1 | 6069 | P.1.17 | 0.000162 |
S | 20 | T20N | aCc | aAc | 4205 | 4211 | P.1.15 | 0.976998 |
S | 20 | T20N | aCC | aAT | 6 | 4211 | P.1.15 | 0.001394 |
S | 20 | T20T | acC | acT | 3886 | 3888 | AY.75.1 | 0.700685 |
S | 20 | T20T | acC | acA | 2 | 3888 | AY.75.1 | 0.000361 |
S | 20 | T20N | aCc | aAc | 3654 | 3660 | P.1.10 | 0.98464 |
S | 20 | T20N | aCC | aAT | 6 | 3660 | P.1.10 | 0.001617 |
S | 20 | T20N | aCc | aAc | 3090 | 3101 | P.1.7 | 0.98659 |
S | 20 | T20N | aCC | aAT | 11 | 3101 | P.1.7 | 0.003512 |
S | 20 | T20I | aCc | aTc | 3033 | 3045 | B.1.1.7 | 0.002715 |
S | 20 | T20I | aCC | aTT | 12 | 3045 | B.1.1.7 | 0.000011 |
S | 20 | T20N | aCc | aAc | 2945 | 2948 | P.1.1 | 0.935515 |
S | 20 | T20N | aCC | aAT | 3 | 2948 | P.1.1 | 0.000953 |
S | 20 | T20N | aCc | aAc | 2522 | 2550 | P.1.16 | 0.943509 |
S | 20 | T20N | aCC | aAT | 28 | 2550 | P.1.16 | 0.010475 |
S | 20 | T20T | acC | acT | 2265 | 2482 | B.1.1.7 | 0.002028 |
S | 20 | T20T | acC | acA | 215 | 2482 | B.1.1.7 | 0.000192 |
S | 20 | T20T | acC | acG | 2 | 2482 | B.1.1.7 | 0.000002 |
S | 20 | T20I | aCc | aTc | 1920 | 1923 | B.1.1.176 | 0.843585 |
S | 20 | T20I | aCC | aTT | 3 | 1923 | B.1.1.176 | 0.001318 |
S | 20 | T20N | aCc | aAc | 1789 | 1793 | P.1.12 | 0.865924 |
S | 20 | T20N | aCC | aAT | 4 | 1793 | P.1.12 | 0.001936 |
S | 20 | T20T | acC | acT | 1696 | 1729 | B.1.617.2 | 0.006386 |
S | 20 | T20T | acC | acA | 32 | 1729 | B.1.617.2 | 0.00012 |
S | 20 | T20T | acC | acG | 1 | 1729 | B.1.617.2 | 0.000004 |
S | 20 | T20N | aCc | aAc | 1141 | 1141 | P.1.17.1 | 0.99825 |
S | 20 | T20N | aCc | aAc | 1079 | 1079 | P.1.13 | 0.969452 |
S | 20 | T20I | aCc | aTc | 1068 | 1071 | B.1.588 | 0.971793 |
S | 20 | T20I | aCC | aTA | 3 | 1071 | B.1.588 | 0.00273 |
S | 20 | T20N | aCc | aAc | 1017 | 1022 | P.1.4 | 0.993164 |
S | 20 | T20N | aCC | aAT | 5 | 1022 | P.1.4 | 0.004883 |
S | 20 | T20N | aCc | aAc | 856 | 856 | P.1.2 | 0.989595 |
S | 20 | T20T | acC | acT | 759 | 770 | B.1.427 | 0.038328 |
S | 20 | T20T | acC | acA | 11 | 770 | B.1.427 | 0.000555 |
S | 20 | T20T | acC | acT | 679 | 731 | AY.4 | 0.001057 |
S | 20 | T20T | acC | acA | 50 | 731 | AY.4 | 0.000078 |
S | 20 | T20T | acC | acG | 2 | 731 | AY.4 | 0.000003 |
S | 20 | T20T | acC | acA | 650 | 650 | B.1.524 | 0.914205 |
S | 20 | T20I | aCc | aTc | 623 | 624 | AY.103 | 0.003868 |
S | 20 | T20I | aCC | aTT | 1 | 624 | AY.103 | 0.000006 |
S | 20 | T20T | acC | acT | 538 | 538 | AY.105 | 0.345981 |
S | 20 | T20I | aCc | aTc | 520 | 521 | AY.4 | 0.000809 |
S | 20 | T20I | aCC | aTT | 1 | 521 | AY.4 | 0.000002 |
S | 20 | T20N | aCc | aAc | 512 | 512 | P.1.6 | 0.996109 |
S | 20 | T20T | acC | acT | 430 | 430 | AY.58 | 0.3902 |
S | 20 | T20T | acC | acT | 421 | 427 | AY.47 | 0.013095 |
S | 20 | T20T | acC | acA | 6 | 427 | AY.47 | 0.000187 |
S | 20 | T20T | acC | acT | 391 | 425 | AY.103 | 0.002428 |
S | 20 | T20T | acC | acA | 34 | 425 | AY.103 | 0.000211 |
S | 20 | T20T | acC | acT | 370 | 406 | AY.25 | 0.002225 |
S | 20 | T20T | acC | acA | 35 | 406 | AY.25 | 0.000211 |
S | 20 | T20T | acC | acG | 1 | 406 | AY.25 | 0.000006 |
S | 20 | T20I | aCc | aTc | 375 | 376 | B.1.160 | 0.011695 |
S | 20 | T20I | aCC | aTT | 1 | 376 | B.1.160 | 0.000031 |
S | 20 | T20I | aCc | aTc | 374 | 375 | B.1.2 | 0.003293 |
S | 20 | T20I | aCC | aTT | 1 | 375 | B.1.2 | 0.000009 |
S | 20 | T20A | Acc | Gcc | 322 | 323 | All | 0.000062 |
S | 20 | T20A | AcC | GcT | 1 | 323 | All | 0 |
S | 20 | T20I | aCc | aTc | 314 | 317 | B.1.617.2 | 0.001182 |
S | 20 | T20I | aCC | aTT | 3 | 317 | B.1.617.2 | 0.000011 |
S | 20 | T20T | acC | acT | 191 | 271 | B.1.2 | 0.001682 |
S | 20 | T20T | acC | acA | 60 | 271 | B.1.2 | 0.000528 |
S | 20 | T20T | acC | acG | 20 | 271 | B.1.2 | 0.000176 |
S | 20 | T20A | Acc | Gcc | 220 | 221 | AY.47 | 0.006843 |
S | 20 | T20A | AcC | GcT | 1 | 221 | AY.47 | 0.000031 |
S | 20 | T20I | aCc | aTc | 221 | 221 | AY.80 | 0.249436 |
S | 20 | T20N | aCc | aAc | 208 | 208 | P.1.8 | 0.995215 |
S | 20 | T20I | aCc | aTc | 204 | 204 | B.1 | 0.001869 |
S | 20 | T20N | aCc | aAc | 204 | 204 | P.1.9 | 0.980769 |
S | 20 | T20I | aCc | aTc | 191 | 191 | AY.43 | 0.000846 |
S | 20 | T20P | Acc | Ccc | 189 | 190 | All | 0.000036 |
S | 20 | T20P | AcC | CcA | 1 | 190 | All | 0 |
S | 20 | T20T | acC | acT | 141 | 156 | AY.4.2 | 0.003058 |
S | 20 | T20T | acC | acA | 13 | 156 | AY.4.2 | 0.000282 |
S | 20 | T20T | acC | acG | 2 | 156 | AY.4.2 | 0.000043 |
S | 20 | T20T | acC | acT | 149 | 155 | AY.42 | 0.005994 |
S | 20 | T20T | acC | acA | 6 | 155 | AY.42 | 0.000241 |
S | 20 | T20del | ACC | --- | 151 | 151 | All | 0.000029 |
S | 20 | T20P | Acc | Ccc | 146 | 146 | B.1.1.7 | 0.000131 |
S | 20 | T20T | acC | acT | 118 | 144 | B.1.1 | 0.002141 |
S | 20 | T20T | acC | acA | 24 | 144 | B.1.1 | 0.000435 |
S | 20 | T20T | acC | acG | 2 | 144 | B.1.1 | 0.000036 |
S | 20 | T20T | acC | acT | 120 | 143 | AY.44 | 0.00073 |
S | 20 | T20T | acC | acA | 21 | 143 | AY.44 | 0.000128 |
S | 20 | T20T | acC | acG | 2 | 143 | AY.44 | 0.000012 |
S | 20 | T20T | acC | acT | 107 | 139 | AY.43 | 0.000474 |
S | 20 | T20T | acC | acA | 29 | 139 | AY.43 | 0.000128 |
S | 20 | T20T | acC | acG | 3 | 139 | AY.43 | 0.000013 |
S | 20 | T20S | aCc | aGc | 117 | 135 | All | 0.000022 |
S | 20 | T20S | Acc | Tcc | 17 | 135 | All | 0.000003 |
S | 20 | T20S | AcC | TcT | 1 | 135 | All | 0 |
S | 20 | T20T | acC | acT | 94 | 127 | B.1 | 0.000861 |
S | 20 | T20T | acC | acA | 33 | 127 | B.1 | 0.000302 |
S | 20 | T20I | aCc | aTc | 126 | 127 | B.1.1.519 | 0.005004 |
S | 20 | T20I | aCC | aTT | 1 | 127 | B.1.1.519 | 0.00004 |
S | 20 | T20I | aCc | aTc | 122 | 122 | AY.25 | 0.000734 |
S | 20 | T20N | aCc | aAc | 106 | 106 | P.1.10.1 | 0.861789 |
S | 20 | T20I | aCc | aTc | 98 | 98 | AP.1 | 0.147147 |
S | 20 | T20N | aCc | aAc | 98 | 98 | P.1.11 | 1 |
S | 20 | T20S | aCc | aGc | 94 | 94 | C.37 | 0.01091 |
S | 20 | T20I | aCc | aTc | 91 | 91 | AY.46 | 0.009471 |
S | 20 | T20T | acC | acT | 89 | 89 | AY.69 | 0.016614 |
S | 20 | T20T | acC | acT | 89 | 89 | B.1.561 | 0.035331 |
S | 20 | T20I | aCc | aTc | 77 | 85 | C.23 | 0.447674 |
S | 20 | T20I | aCC | aTT | 8 | 85 | C.23 | 0.046512 |
S | 20 | T20I | aCc | aTc | 84 | 84 | AY.44 | 0.000511 |
S | 20 | T20T | acC | acT | 80 | 80 | AY.118 | 0.005012 |
S | 20 | T20N | aCc | aAc | 78 | 78 | B.1 | 0.000714 |
S | 20 | T20T | acC | acT | 70 | 70 | AY.51 | 0.063636 |
S | 20 | T20N | aCc | aAc | 64 | 65 | B.1.1.7 | 0.000057 |
S | 20 | T20N | aCC | aAT | 1 | 65 | B.1.1.7 | 0.000001 |
S | 20 | T20T | acC | acT | 65 | 65 | B.1.258.21 | 0.503876 |
S | 20 | T20I | aCc | aTc | 65 | 65 | B.1.619.1 | 0.041693 |
S | 20 | T20T | acC | acT | 50 | 64 | B.1.429 | 0.001176 |
S | 20 | T20T | acC | acA | 14 | 64 | B.1.429 | 0.000329 |
S | 20 | T20I | aCc | aTc | 63 | 63 | C.37 | 0.007312 |
S | 20 | T20T | acC | acT | 59 | 60 | AY.34 | 0.005721 |
S | 20 | T20T | acC | acA | 1 | 60 | AY.34 | 0.000097 |
S | 20 | T20T | acC | acT | 49 | 59 | AY.39 | 0.001211 |
S | 20 | T20T | acC | acA | 9 | 59 | AY.39 | 0.000222 |
S | 20 | T20T | acC | acG | 1 | 59 | AY.39 | 0.000025 |
S | 20 | T20T | acC | acT | 54 | 54 | B.1.1.214 | 0.002995 |
S | 20 | T20T | acC | acT | 53 | 53 | AY.54 | 0.005053 |
S | 20 | T20T | acC | acT | 50 | 52 | AY.26 | 0.001416 |
S | 20 | T20T | acC | acA | 2 | 52 | AY.26 | 0.000057 |
S | 20 | T20T | acC | acT | 50 | 51 | B.1.1.519 | 0.001986 |
S | 20 | T20T | acC | acA | 1 | 51 | B.1.1.519 | 0.00004 |
S | 20 | T20T | acC | acT | 47 | 51 | B.1.177 | 0.000619 |
S | 20 | T20T | acC | acA | 4 | 51 | B.1.177 | 0.000053 |
S | 20 | T20N | aCc | aAc | 50 | 50 | B.1.1 | 0.000907 |
S | 20 | T20I | aCc | aTc | 50 | 50 | B.1.595 | 0.013048 |
S | 20 | T20T | acC | acT | 49 | 49 | B.1.177.60 | 0.010703 |
S | 20 | T20I | aCc | aTc | 49 | 49 | B.1.596 | 0.00427 |
S | 20 | T20T | acC | acG | 42 | 48 | B.1.1.284 | 0.004511 |
S | 20 | T20T | acC | acT | 6 | 48 | B.1.1.284 | 0.000644 |
S | 20 | T20T | acC | acT | 46 | 46 | B.1.1.128 | 0.326241 |
S | 20 | T20T | acC | acT | 44 | 45 | AY.119 | 0.001554 |
S | 20 | T20T | acC | acA | 1 | 45 | AY.119 | 0.000035 |
S | 20 | T20T | acC | acT | 28 | 45 | AY.3 | 0.000278 |
S | 20 | T20T | acC | acA | 15 | 45 | AY.3 | 0.000149 |
S | 20 | T20T | acC | acG | 2 | 45 | AY.3 | 0.00002 |
S | 20 | T20T | acC | acT | 41 | 43 | AY.33 | 0.002738 |
S | 20 | T20T | acC | acA | 2 | 43 | AY.33 | 0.000134 |
S | 20 | T20I | aCc | aTc | 43 | 43 | AY.4.2 | 0.000933 |
S | 20 | T20T | acC | acA | 33 | 41 | AY.120 | 0.001227 |
S | 20 | T20T | acC | acT | 8 | 41 | AY.120 | 0.000297 |
S | 20 | T20I | aCc | aTc | 41 | 41 | AY.29 | 0.000647 |
S | 20 | T20T | acC | acT | 41 | 41 | AY.99.2 | 0.003778 |
S | 20 | T20I | aCc | aTc | 41 | 41 | B.1.177 | 0.00054 |
S | 20 | T20T | acC | acT | 40 | 40 | AY.32 | 0.021299 |
S | 20 | T20I | aCc | aTc | 40 | 40 | B.1.526 | 0.00094 |
S | 20 | T20T | acC | acT | 39 | 39 | B.1.1.28 | 0.012138 |
S | 20 | T20I | aCc | aTc | 39 | 39 | B.1.429 | 0.000918 |
S | 20 | T20T | acC | acA | 23 | 39 | B.1.637 | 0.001681 |
S | 20 | T20T | acC | acT | 16 | 39 | B.1.637 | 0.001169 |
S | 20 | T20I | aCc | aTc | 37 | 37 | AY.118 | 0.002318 |
S | 20 | T20T | acC | acT | 37 | 37 | Q.3 | 0.005366 |
S | 20 | T20I | aCc | aTc | 34 | 34 | AY.102 | 0.000901 |
S | 20 | T20T | acC | acT | 34 | 34 | AY.85 | 0.014524 |
S | 20 | T20I | aCc | aTc | 34 | 34 | B.1.1 | 0.000617 |
S | 20 | T20T | acC | acT | 34 | 34 | B.1.1.369 | 0.015172 |
S | 20 | T20T | acC | acT | 33 | 33 | B.1.518 | 0.388235 |
S | 20 | T20I | aCc | aTc | 31 | 31 | AY.3.1 | 0.002643 |
S | 20 | T20T | acC | acT | 30 | 30 | B.1.369 | 0.008557 |
S | 20 | T20T | acC | acT | 22 | 29 | B.1.160 | 0.000686 |
S | 20 | T20T | acC | acA | 7 | 29 | B.1.160 | 0.000218 |
S | 20 | T20T | acC | acA | 29 | 29 | B.1.177.10 | 0.025461 |
S | 20 | T20T | acC | acA | 25 | 29 | B.1.258.17 | 0.002599 |
S | 20 | T20T | acC | acT | 4 | 29 | B.1.258.17 | 0.000416 |
S | 20 | T20N | aCc | aAc | 29 | 29 | B.1.497 | 0.009128 |
S | 20 | T20N | aCc | aAc | 29 | 29 | P.1.3 | 1 |
S | 20 | T20I | aCc | aTc | 28 | 28 | AY.71 | 0.013302 |
S | 20 | T20N | aCc | aAc | 28 | 28 | B.1.617.2 | 0.000105 |
S | 20 | T20A | Acc | Gcc | 26 | 26 | AY.29 | 0.00041 |
S | 20 | T20I | aCc | aTc | 26 | 26 | AY.39 | 0.000642 |
S | 20 | T20T | acC | acT | 26 | 26 | AY.70 | 0.005421 |
S | 20 | T20T | acC | acT | 26 | 26 | B.1.221 | 0.001847 |
S | 20 | T20I | aCc | aTc | 26 | 26 | B.1.588.1 | 1 |
S | 20 | T20N | aCc | aAc | 25 | 25 | B.1.1.528 | 0.120192 |
S | 20 | T20T | acC | acT | 24 | 24 | AD.2 | 0.005255 |
S | 20 | T20I | aCc | aTc | 24 | 24 | AY.88 | 0.02122 |
S | 20 | T20T | acC | acT | 24 | 24 | B.1.351 | 0.000713 |
S | 20 | T20I | aCc | aTc | 24 | 24 | B.1.575 | 0.007282 |
S | 20 | T20T | acC | acT | 18 | 24 | B.1.621 | 0.001593 |
S | 20 | T20T | acC | acA | 6 | 24 | B.1.621 | 0.000531 |
S | 20 | T20N | aCc | aAc | 24 | 24 | P.1.10.2 | 1 |
S | 20 | T20T | acC | acT | 22 | 23 | AY.62 | 0.009586 |
S | 20 | T20T | acC | acA | 1 | 23 | AY.62 | 0.000436 |
S | 20 | T20T | acC | acT | 18 | 23 | AY.9.2 | 0.000661 |
S | 20 | T20T | acC | acA | 5 | 23 | AY.9.2 | 0.000184 |
S | 20 | T20T | acC | acT | 22 | 23 | B.1.526 | 0.000517 |
S | 20 | T20T | acC | acG | 1 | 23 | B.1.526 | 0.000024 |
S | 20 | T20T | acC | acA | 12 | 22 | C.37 | 0.001393 |
S | 20 | T20T | acC | acT | 10 | 22 | C.37 | 0.001161 |
S | 20 | T20I | aCc | aTc | 21 | 21 | AY.26 | 0.000595 |
S | 20 | T20I | aCc | aTc | 21 | 21 | AY.3 | 0.000209 |
S | 20 | T20del | ACC | --- | 21 | 21 | AY.39.1 | 0.000832 |
S | 20 | T20T | acC | acT | 21 | 21 | AY.5.4 | 0.005811 |
S | 20 | T20N | aCc | aAc | 21 | 21 | B.1.1.28 | 0.006536 |
S | 20 | T20T | acC | acT | 21 | 21 | B.1.234 | 0.002771 |
S | 20 | T20N | aCc | aAc | 21 | 21 | C.37 | 0.002437 |
S | 20 | T20T | acC | acT | 20 | 20 | AY.20 | 0.000777 |
S | 20 | T20I | aCc | aTc | 20 | 20 | B.1.1.122 | 0.909091 |
S | 20 | T20I | aCc | aTc | 20 | 20 | B.1.1.284 | 0.002148 |
S | 20 | T20T | acC | acT | 20 | 20 | B.1.243 | 0.001392 |
S | 20 | T20I | aCc | aTc | 20 | 20 | B.1.258 | 0.001331 |
S | 20 | T20I | aCc | aTc | 19 | 19 | AY.20 | 0.000738 |
S | 20 | T20T | acC | acT | 19 | 19 | B.1.1.218 | 0.146154 |
S | 20 | T20I | aCc | aTc | 18 | 18 | AY.47 | 0.00056 |
S | 20 | T20T | acC | acT | 18 | 18 | B.1.1.222 | 0.003672 |
S | 20 | T20del | ACC | --- | 18 | 18 | B.1.1.7 | 0.000016 |
S | 20 | T20T | acC | acT | 18 | 18 | B.1.206 | 0.014682 |
S | 20 | T20T | acC | acT | 17 | 18 | B.1.240 | 0.003665 |
S | 20 | T20T | acC | acG | 1 | 18 | B.1.240 | 0.000216 |
S | 20 | T20I | aCc | aTc | 17 | 17 | AY.120 | 0.000632 |
S | 20 | T20T | acC | acT | 17 | 17 | AY.98.1 | 0.000823 |
S | 20 | T20I | aCc | aTc | 17 | 17 | B.1.1.28 | 0.005291 |
S | 20 | T20I | aCc | aTc | 17 | 17 | B.1.258.17 | 0.001768 |
S | 20 | T20T | acC | acT | 15 | 16 | AY.39.1 | 0.000594 |
S | 20 | T20T | acC | acA | 1 | 16 | AY.39.1 | 0.00004 |
S | 20 | T20K | aCC | aAA | 15 | 15 | All | 0.000003 |
S | 20 | T20I | aCc | aTc | 15 | 15 | AY.100 | 0.00069 |
S | 20 | T20T | acC | acT | 13 | 15 | AY.23 | 0.000907 |
S | 20 | T20T | acC | acA | 2 | 15 | AY.23 | 0.000139 |
S | 20 | T20N | aCc | aAc | 15 | 15 | AY.43 | 0.000066 |
S | 20 | T20T | acC | acT | 15 | 15 | AY.74 | 0.001735 |
S | 20 | T20T | acC | acT | 10 | 15 | B.1.258 | 0.000665 |
S | 20 | T20T | acC | acA | 5 | 15 | B.1.258 | 0.000333 |
S | 20 | T20T | acC | acT | 14 | 14 | AY.117 | 0.001183 |
S | 20 | T20T | acC | acT | 14 | 14 | AY.24 | 0.006034 |
S | 20 | T20I | aCc | aTc | 14 | 14 | AY.46.5 | 0.002778 |
S | 20 | T20T | acC | acT | 14 | 14 | B.1.1.486 | 0.022082 |
S | 20 | T20A | Acc | Gcc | 14 | 14 | B.1.1.7 | 0.000013 |
S | 20 | T20T | acC | acT | 14 | 14 | B.1.177.18 | 0.016241 |
S | 20 | T20I | aCc | aTc | 14 | 14 | B.1.36 | 0.002043 |
S | 20 | T20T | acC | acT | 14 | 14 | B.1.517 | 0.005978 |
S | 20 | T20A | Acc | Gcc | 14 | 14 | B.1.617.2 | 0.000053 |
S | 20 | T20T | acC | acA | 14 | 14 | B.6.6 | 0.012444 |
S | 20 | T20N | aCc | aAc | 14 | 14 | Q.1 | 0.001769 |
S | 20 | T20T | acC | acT | 13 | 13 | AY.46.6 | 0.000939 |
S | 20 | T20I | aCc | aTc | 13 | 13 | B.1.1.201 | 0.317073 |
S | 20 | T20I | aCc | aTc | 13 | 13 | B.1.221 | 0.000923 |
S | 20 | T20I | aCc | aTc | 13 | 13 | B.1.509 | 0.011255 |
S | 20 | T20N | aCc | aAc | 13 | 13 | P.1.5 | 1 |
S | 20 | T20T | acC | acT | 12 | 13 | P.2 | 0.00224 |
S | 20 | T20T | acC | acA | 1 | 13 | P.2 | 0.000187 |
S | 20 | T20I | aCc | aTc | 12 | 12 | AY.23 | 0.000837 |
S | 20 | T20I | aCc | aTc | 12 | 12 | AY.33 | 0.000801 |
S | 20 | T20T | acC | acT | 12 | 12 | B.1.497 | 0.003777 |
S | 20 | T20I | aCc | aTc | 11 | 12 | C.36.3 | 0.006239 |
S | 20 | T20I | aCC | aTT | 1 | 12 | C.36.3 | 0.000567 |
S | 20 | T20I | aCc | aTc | 12 | 12 | Q.2 | 0.007362 |
S | 20 | T20T | acC | acT | 11 | 11 | AU.3 | 0.023207 |
S | 20 | T20T | acC | acT | 11 | 11 | AY.93 | 0.003004 |
S | 20 | T20T | acC | acA | 8 | 11 | B.1.1.216 | 0.007124 |
S | 20 | T20T | acC | acT | 3 | 11 | B.1.1.216 | 0.002671 |
S | 20 | T20I | aCc | aTc | 11 | 11 | B.1.111 | 0.012926 |
S | 20 | T20T | acC | acT | 11 | 11 | B.1.177.21 | 0.000841 |
S | 20 | T20T | acC | acT | 7 | 11 | B.1.596 | 0.00061 |
S | 20 | T20T | acC | acA | 3 | 11 | B.1.596 | 0.000261 |
S | 20 | T20T | acC | acG | 1 | 11 | B.1.596 | 0.000087 |
S | 20 | T20T | acC | acT | 11 | 11 | B.1.617.1 | 0.001419 |
S | 20 | T20T | acC | acT | 6 | 10 | AY.100 | 0.000276 |
S | 20 | T20T | acC | acA | 4 | 10 | AY.100 | 0.000184 |
S | 20 | T20T | acC | acG | 10 | 10 | AY.41 | 0.002939 |
S | 20 | T20I | aCc | aTc | 10 | 10 | AY.5 | 0.000206 |
S | 20 | T20I | aCc | aTc | 10 | 10 | B.1.351 | 0.000297 |
S | 20 | T20T | acC | acT | 10 | 10 | B.1.582 | 0.004907 |
S | 20 | T20I | aCc | aTc | 10 | 10 | Q.8 | 0.001649 |
S | 20 | T20N | aCc | aAc | 9 | 9 | AY.103 | 0.000056 |
S | 20 | T20I | aCc | aTc | 9 | 9 | AY.42 | 0.000362 |
S | 20 | T20I | aCc | aTc | 9 | 9 | AY.6 | 0.00037 |
S | 20 | T20T | acC | acT | 8 | 9 | AY.61 | 0.000838 |
S | 20 | T20T | acC | acA | 1 | 9 | AY.61 | 0.000105 |
S | 20 | T20I | aCc | aTc | 9 | 9 | B.1.1.174 | 0.030405 |
S | 20 | T20T | acC | acT | 8 | 9 | B.1.466.2 | 0.00313 |
S | 20 | T20T | acC | acA | 1 | 9 | B.1.466.2 | 0.000391 |
S | 20 | T20I | aCc | aTc | 9 | 9 | B.1.567 | 0.03 |
S | 20 | T20N | aCc | aAc | 9 | 9 | P.2 | 0.00168 |
S | 20 | T20T | acC | acT | 9 | 9 | P.5 | 0.123288 |
S | 20 | T20P | Acc | Ccc | 9 | 9 | Q.8 | 0.001484 |
S | 20 | T20T | acC | acT | 5 | 9 | Q.8 | 0.000825 |
S | 20 | T20T | acC | acA | 3 | 9 | Q.8 | 0.000495 |
S | 20 | T20T | acC | acG | 1 | 9 | Q.8 | 0.000165 |
S | 20 | T20del | ACC | --- | 8 | 8 | AY.33 | 0.000534 |
S | 20 | T20N | aCc | aAc | 8 | 8 | AY.4 | 0.000012 |
S | 20 | T20T | acC | acT | 6 | 8 | AY.45 | 0.00073 |
S | 20 | T20T | acC | acA | 2 | 8 | AY.45 | 0.000243 |
S | 20 | T20I | aCc | aTc | 8 | 8 | AY.46.6 | 0.000578 |
S | 20 | T20I | aCC | aTT | 8 | 8 | AY.75 | 0.000448 |
S | 20 | T20I | aCc | aTc | 8 | 8 | B.1.1.214 | 0.000444 |
S | 20 | T20I | aCc | aTc | 8 | 8 | B.1.1.33 | 0.003367 |
S | 20 | T20T | acC | acT | 8 | 8 | B.1.1.434 | 0.002788 |
S | 20 | T20K | aCC | aAA | 8 | 8 | B.1.1.7 | 0.000007 |
S | 20 | T20I | aCc | aTc | 8 | 8 | B.1.177.60 | 0.001747 |
S | 20 | T20T | acC | acT | 7 | 8 | B.1.214.2 | 0.004197 |
S | 20 | T20T | acC | acA | 1 | 8 | B.1.214.2 | 0.0006 |
S | 20 | T20T | acC | acT | 7 | 8 | B.1.36 | 0.001021 |
S | 20 | T20T | acC | acA | 1 | 8 | B.1.36 | 0.000146 |
S | 20 | T20T | acC | acT | 8 | 8 | D.2 | 0.0006 |
S | 20 | T20T | acC | acT | 8 | 8 | Q.1 | 0.001011 |
S | 20 | T20T | acC | acA | 6 | 7 | AY.121 | 0.000812 |
S | 20 | T20T | acC | acT | 1 | 7 | AY.121 | 0.000135 |
S | 20 | T20I | aCc | aTc | 7 | 7 | AY.46.4 | 0.001152 |
S | 20 | T20del | ACC | --- | 7 | 7 | AY.59 | 0.003708 |
S | 20 | T20T | acC | acT | 7 | 7 | B | 0.000895 |
S | 20 | T20del | ACC | --- | 7 | 7 | B.1.1 | 0.000127 |
S | 20 | T20I | aCc | aTc | 6 | 7 | B.1.1.306 | 0.00263 |
S | 20 | T20I | aCC | aTT | 1 | 7 | B.1.1.306 | 0.000438 |
S | 20 | T20T | acC | acT | 7 | 7 | B.1.1.458 | 0.291667 |
S | 20 | T20T | acC | acG | 7 | 7 | B.1.1.464 | 0.010309 |
S | 20 | T20I | aCc | aTc | 7 | 7 | B.1.177.21 | 0.000535 |
S | 20 | T20S | Acc | Tcc | 7 | 7 | B.1.2 | 0.000062 |
S | 20 | T20I | aCc | aTc | 7 | 7 | B.1.525 | 0.000792 |
S | 20 | T20I | aCc | aTc | 7 | 7 | B.1.561 | 0.002779 |
S | 20 | T20T | acC | acT | 7 | 7 | B.1.93 | 0.006536 |
S | 20 | T20T | acC | acT | 6 | 6 | A.2.5 | 0.002994 |
S | 20 | T20F | ACc | TTc | 5 | 6 | All | 0.000001 |
S | 20 | T20F | ACC | TTT | 1 | 6 | All | 0 |
S | 20 | T20I | aCc | aTc | 6 | 6 | AS.1 | 0.057143 |
S | 20 | T20del | ACC | --- | 6 | 6 | AY.103 | 0.000037 |
S | 20 | T20T | acC | acT | 6 | 6 | AY.108 | 0.006615 |
S | 20 | T20I | aCc | aTc | 6 | 6 | AY.113 | 0.000854 |
S | 20 | T20I | aCc | aTc | 6 | 6 | AY.39.1 | 0.000238 |
S | 20 | T20A | Acc | Gcc | 6 | 6 | AY.4 | 0.000009 |
S | 20 | T20A | Acc | Gcc | 6 | 6 | AY.43 | 0.000027 |
S | 20 | T20I | aCc | aTc | 6 | 6 | AY.73 | 0.003992 |
S | 20 | T20I | aCc | aTc | 6 | 6 | AY.9.1 | 0.000502 |
S | 20 | T20T | acC | acA | 4 | 6 | AY.9.1 | 0.000335 |
S | 20 | T20T | acC | acT | 2 | 6 | AY.9.1 | 0.000167 |
S | 20 | T20T | acC | acT | 6 | 6 | AY.98 | 0.000474 |
S | 20 | T20P | Acc | Ccc | 5 | 6 | B.1.1 | 0.000091 |
S | 20 | T20P | AcC | CcA | 1 | 6 | B.1.1 | 0.000018 |
S | 20 | T20I | aCc | aTc | 5 | 6 | B.1.1.1 | 0.001633 |
S | 20 | T20I | aCC | aTT | 1 | 6 | B.1.1.1 | 0.000327 |
S | 20 | T20T | acC | acA | 6 | 6 | B.1.1.253 | 0.015038 |
S | 20 | T20T | acC | acT | 6 | 6 | B.1.1.298 | 0.005172 |
S | 20 | T20T | acC | acA | 5 | 6 | B.1.1.316 | 0.004625 |
S | 20 | T20T | acC | acT | 1 | 6 | B.1.1.316 | 0.000925 |
S | 20 | T20I | aCc | aTc | 6 | 6 | B.1.243 | 0.000418 |
S | 20 | T20I | aCc | aTc | 6 | 6 | B.1.351.2 | 0.001815 |
S | 20 | T20T | acC | acT | 6 | 6 | B.1.397 | 0.029126 |
S | 20 | T20I | aCc | aTc | 6 | 6 | B.1.427 | 0.000303 |
S | 20 | T20del | ACC | --- | 6 | 6 | B.1.525 | 0.000679 |
S | 20 | T20T | acC | acT | 6 | 6 | B.1.567 | 0.02 |
S | 20 | T20T | acC | acT | 5 | 6 | B.1.595 | 0.001305 |
S | 20 | T20T | acC | acG | 1 | 6 | B.1.595 | 0.000261 |
S | 20 | T20del | ACC | --- | 6 | 6 | B.1.617.2 | 0.000023 |
S | 20 | T20T | acC | acA | 4 | 5 | AY.27 | 0.000259 |
S | 20 | T20T | acC | acT | 1 | 5 | AY.27 | 0.000065 |
S | 20 | T20N | aCc | aAc | 5 | 5 | AY.29 | 0.000079 |
S | 20 | T20del | ACC | --- | 5 | 5 | AY.4 | 0.000008 |
S | 20 | T20del | ACC | --- | 5 | 5 | AY.43 | 0.000022 |
S | 20 | T20del | ACC | --- | 5 | 5 | AY.44 | 0.00003 |
S | 20 | T20N | aCc | aAc | 5 | 5 | AY.44 | 0.00003 |
S | 20 | T20I | aCc | aTc | 5 | 5 | AY.45 | 0.000608 |
S | 20 | T20I | aCc | aTc | 5 | 5 | AY.54 | 0.000477 |
S | 20 | T20T | acC | acT | 3 | 5 | AY.6 | 0.000123 |
S | 20 | T20T | acC | acA | 2 | 5 | AY.6 | 0.000082 |
S | 20 | T20I | aCc | aTc | 5 | 5 | AY.83 | 0.008621 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.1.1 | 0.001633 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.1.228 | 0.015244 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.1.231 | 0.01548 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.1.317 | 0.002058 |
S | 20 | T20I | aCc | aTc | 5 | 5 | B.1.1.37 | 0.000964 |
S | 20 | T20T | acC | acT | 3 | 5 | B.1.1.70 | 0.001023 |
S | 20 | T20T | acC | acA | 2 | 5 | B.1.1.70 | 0.000682 |
S | 20 | T20I | aCc | aTc | 5 | 5 | B.1.177.4 | 0.001055 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.177.56 | 0.003338 |
S | 20 | T20T | acC | acT | 4 | 5 | B.1.177.75 | 0.004162 |
S | 20 | T20T | acC | acA | 1 | 5 | B.1.177.75 | 0.001041 |
S | 20 | T20S | aCc | aGc | 5 | 5 | B.1.177.81 | 0.000947 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.192 | 0.046296 |
S | 20 | T20I | aCc | aTc | 5 | 5 | B.1.234 | 0.00066 |
S | 20 | T20I | aCc | aTc | 5 | 5 | B.1.240 | 0.001078 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.367 | 0.003962 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.575 | 0.001517 |
S | 20 | T20N | aCc | aAc | 5 | 5 | B.1.596 | 0.000436 |
S | 20 | T20T | acC | acT | 5 | 5 | B.1.600 | 0.02924 |
S | 20 | T20I | aCc | aTc | 5 | 5 | Q.1 | 0.000632 |
S | 20 | T20I | aCc | aTc | 5 | 5 | R.1 | 0.00045 |
S | 20 | T20T | acC | acT | 3 | 4 | A.23.1 | 0.002113 |
S | 20 | T20T | acC | acA | 1 | 4 | A.23.1 | 0.000704 |
S | 20 | T20del1 | aCc | a-c | 3 | 4 | All | 0.000001 |
S | 20 | T20del1 | ACc | G-c | 1 | 4 | All | 0 |
S | 20 | T20T | acC | acA | 3 | 4 | AY.102 | 0.00008 |
S | 20 | T20T | acC | acT | 1 | 4 | AY.102 | 0.000027 |
S | 20 | T20A | Acc | Gcc | 4 | 4 | AY.103 | 0.000025 |
S | 20 | T20del | ACC | --- | 4 | 4 | AY.120 | 0.000149 |
S | 20 | T20N | aCc | aAc | 4 | 4 | AY.20 | 0.000155 |
S | 20 | T20del | ACC | --- | 4 | 4 | AY.39 | 0.000099 |
S | 20 | T20T | acC | acT | 4 | 4 | AY.67 | 0.001857 |
S | 20 | T20I | aCc | aTc | 4 | 4 | AY.7.1 | 0.000451 |
S | 20 | T20T | acC | acT | 4 | 4 | AY.73 | 0.002661 |
S | 20 | T20del | ACC | --- | 4 | 4 | AY.75 | 0.000224 |
S | 20 | T20S | aCc | aGc | 4 | 4 | AY.85 | 0.001709 |
S | 20 | T20I | aCc | aTc | 4 | 4 | AY.98 | 0.000316 |
S | 20 | T20N | aCc | aAc | 4 | 4 | B.1.1.161 | 0.014134 |
S | 20 | T20T | acC | acT | 4 | 4 | B.1.1.170 | 0.004988 |
S | 20 | T20I | aCc | aTc | 4 | 4 | B.1.1.216 | 0.003562 |
S | 20 | T20I | aCc | aTc | 4 | 4 | B.1.1.220 | 0.007435 |
S | 20 | T20T | acC | acT | 3 | 4 | B.1.1.33 | 0.001263 |
S | 20 | T20T | acC | acA | 1 | 4 | B.1.1.33 | 0.000421 |
S | 20 | T20T | acC | acT | 3 | 4 | B.1.177.7 | 0.000495 |
S | 20 | T20T | acC | acA | 1 | 4 | B.1.177.7 | 0.000165 |
S | 20 | T20T | acC | acT | 4 | 4 | B.1.177.81 | 0.000757 |
S | 20 | T20T | acC | acT | 4 | 4 | B.1.177.87 | 0.002911 |
S | 20 | T20P | Acc | Ccc | 4 | 4 | B.1.2 | 0.000035 |
S | 20 | T20T | acC | acA | 3 | 4 | B.1.351.2 | 0.000908 |
S | 20 | T20T | acC | acT | 1 | 4 | B.1.351.2 | 0.000303 |
S | 20 | T20T | acC | acA | 4 | 4 | B.1.36.1 | 0.004561 |
S | 20 | T20T | acC | acT | 4 | 4 | B.1.36.17 | 0.001976 |
S | 20 | T20T | acC | acT | 4 | 4 | B.1.36.29 | 0.002069 |
S | 20 | T20I | aCc | aTc | 4 | 4 | B.1.369 | 0.001141 |
S | 20 | T20I | aCc | aTc | 4 | 4 | B.1.396 | 0.002823 |
S | 20 | T20F | ACc | TTc | 4 | 4 | B.1.427 | 0.000202 |
S | 20 | T20I | aCc | aTc | 4 | 4 | B.1.448 | 0.010499 |
S | 20 | T20T | acC | acT | 4 | 4 | B.1.543 | 0.04 |
S | 20 | T20T | acC | acT | 4 | 4 | B.1.551 | 0.005161 |
S | 20 | T20T | acC | acT | 4 | 4 | B.1.564 | 0.001704 |
S | 20 | T20I | aCc | aTc | 4 | 4 | B.1.621 | 0.000354 |
S | 20 | T20N | aCc | aAc | 4 | 4 | B.1.621 | 0.000354 |
S | 20 | T20N | aCc | aAc | 4 | 4 | B.1.636 | 0.026846 |
S | 20 | T20T | acC | acT | 4 | 4 | L.3 | 0.014184 |
S | 20 | T20S | aCc | aGc | 4 | 4 | P.1 | 0.000063 |
S | 20 | T20I | aCc | aTc | 4 | 4 | P.2 | 0.000747 |
S | 20 | T20I | aCc | aTc | 4 | 4 | Q.4 | 0.001819 |
S | 20 | T20T | acC | acT | 4 | 4 | Q.7 | 0.004444 |
S | 20 | T20I | aCc | aTc | 4 | 4 | W.2 | 0.019324 |
S | 20 | T20T | acC | acT | 3 | 3 | A.2 | 0.001985 |
S | 20 | T20A | Acc | Gcc | 3 | 3 | AY.100 | 0.000138 |
S | 20 | T20I | aCc | aTc | 3 | 3 | AY.111 | 0.000549 |
S | 20 | T20I | aCc | aTc | 3 | 3 | AY.29.1 | 0.000662 |
S | 20 | T20A | Acc | Gcc | 3 | 3 | AY.3 | 0.00003 |
S | 20 | T20del | ACC | --- | 3 | 3 | AY.3 | 0.00003 |
S | 20 | T20T | acC | acA | 3 | 3 | AY.3.1 | 0.000256 |
S | 20 | T20T | acC | acA | 3 | 3 | AY.36 | 0.000445 |
S | 20 | T20N | aCc | aAc | 3 | 3 | AY.39 | 0.000074 |
S | 20 | T20T | acC | acT | 3 | 3 | AY.4.1 | 0.002212 |
S | 20 | T20T | acC | acT | 3 | 3 | AY.4.5 | 0.000322 |
S | 20 | T20P | Acc | Ccc | 3 | 3 | AY.43 | 0.000013 |
S | 20 | T20P | Acc | Ccc | 3 | 3 | AY.47 | 0.000093 |
S | 20 | T20T | acC | acA | 2 | 3 | AY.5 | 0.000041 |
S | 20 | T20T | acC | acG | 1 | 3 | AY.5 | 0.000021 |
S | 20 | T20I | aCc | aTc | 3 | 3 | AY.7 | 0.000588 |
S | 20 | T20del | ACC | --- | 3 | 3 | AY.75.1 | 0.000541 |
S | 20 | T20I | aCc | aTc | 3 | 3 | AY.9 | 0.000203 |
S | 20 | T20T | acC | acT | 2 | 3 | AY.9 | 0.000135 |
S | 20 | T20T | acC | acG | 1 | 3 | AY.9 | 0.000068 |
S | 20 | T20A | Acc | Gcc | 3 | 3 | B.1 | 0.000027 |
S | 20 | T20A | Acc | Gcc | 3 | 3 | B.1.1 | 0.000054 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.1.222 | 0.000612 |
S | 20 | T20T | acC | acA | 2 | 3 | B.1.1.277 | 0.001517 |
S | 20 | T20T | acC | acT | 1 | 3 | B.1.1.277 | 0.000759 |
S | 20 | T20N | aCc | aAc | 3 | 3 | B.1.1.348 | 0.002389 |
S | 20 | T20T | acC | acT | 3 | 3 | B.1.1.348 | 0.002389 |
S | 20 | T20T | acC | acT | 3 | 3 | B.1.1.409 | 0.008499 |
S | 20 | T20T | acC | acT | 3 | 3 | B.1.1.416 | 0.002715 |
S | 20 | T20N | aCc | aAc | 3 | 3 | B.1.1.519 | 0.000119 |
S | 20 | T20S | AcC | TcT | 1 | 3 | B.1.1.7 | 0.000001 |
S | 20 | T20S | aCc | aGc | 1 | 3 | B.1.1.7 | 0.000001 |
S | 20 | T20S | Acc | Tcc | 1 | 3 | B.1.1.7 | 0.000001 |
S | 20 | T20T | acC | acT | 3 | 3 | B.1.110.3 | 0.002155 |
S | 20 | T20T | acC | acT | 2 | 3 | B.1.160.16 | 0.001859 |
S | 20 | T20T | acC | acA | 1 | 3 | B.1.160.16 | 0.000929 |
S | 20 | T20P | Acc | Ccc | 3 | 3 | B.1.177 | 0.00004 |
S | 20 | T20T | acC | acT | 3 | 3 | B.1.177.83 | 0.004444 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.195 | 0.015075 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.214.2 | 0.001799 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.241 | 0.002435 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.258.3 | 0.005025 |
S | 20 | T20N | aCc | aAc | 3 | 3 | B.1.351 | 0.000089 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.36.31 | 0.005254 |
S | 20 | T20T | acC | acT | 3 | 3 | B.1.525 | 0.000339 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.582 | 0.001472 |
S | 20 | T20N | aCc | aAc | 3 | 3 | B.1.600 | 0.017544 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.609 | 0.001438 |
S | 20 | T20K | aCC | aAA | 3 | 3 | B.1.617.2 | 0.000011 |
S | 20 | T20I | aCc | aTc | 3 | 3 | B.1.637 | 0.000219 |
S | 20 | T20I | aCc | aTc | 3 | 3 | D.2 | 0.000225 |
S | 20 | T20del | ACC | --- | 3 | 3 | P.1 | 0.000047 |
S | 20 | T20K | aCC | aAA | 3 | 3 | P.1 | 0.000047 |
S | 20 | T20P | Acc | Ccc | 3 | 3 | P.5 | 0.041096 |
S | 20 | T20N | aCc | aAc | 2 | 2 | A.2.5 | 0.000998 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.10 | 0.00106 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.101 | 0.000981 |
S | 20 | T20N | aCc | aAc | 2 | 2 | AY.102 | 0.000053 |
S | 20 | T20T | acC | acA | 1 | 2 | AY.106 | 0.000335 |
S | 20 | T20T | acC | acT | 1 | 2 | AY.106 | 0.000335 |
S | 20 | T20T | acC | acT | 1 | 2 | AY.109 | 0.00074 |
S | 20 | T20T | acC | acA | 1 | 2 | AY.109 | 0.00074 |
S | 20 | T20T | acC | acT | 2 | 2 | AY.111 | 0.000366 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.114 | 0.000462 |
S | 20 | T20T | acC | acA | 2 | 2 | AY.116 | 0.000574 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.116.1 | 0.000623 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.119 | 0.000071 |
S | 20 | T20T | acC | acT | 2 | 2 | AY.120.1 | 0.000642 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.121 | 0.000271 |
S | 20 | T20P | Acc | Ccc | 2 | 2 | AY.20 | 0.000078 |
S | 20 | T20N | aCc | aAc | 2 | 2 | AY.23 | 0.000139 |
S | 20 | T20del | ACC | --- | 2 | 2 | AY.25 | 0.000012 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.27 | 0.000129 |
S | 20 | T20T | acC | acT | 2 | 2 | AY.30 | 0.000791 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.35 | 0.000466 |
S | 20 | T20T | acC | acT | 2 | 2 | AY.35 | 0.000466 |
S | 20 | T20T | acC | acT | 2 | 2 | AY.39.2 | 0.003082 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.40 | 0.001929 |
S | 20 | T20S | Acc | Tcc | 1 | 2 | AY.44 | 0.000006 |
S | 20 | T20S | aCc | aGc | 1 | 2 | AY.44 | 0.000006 |
S | 20 | T20N | aCc | aAc | 2 | 2 | AY.45 | 0.000243 |
S | 20 | T20T | acC | acA | 1 | 2 | AY.46 | 0.000104 |
S | 20 | T20T | acC | acT | 1 | 2 | AY.46 | 0.000104 |
S | 20 | T20T | acC | acT | 2 | 2 | AY.46.2 | 0.001271 |
S | 20 | T20T | acC | acT | 2 | 2 | AY.46.5 | 0.000397 |
S | 20 | T20T | acC | acA | 2 | 2 | AY.60 | 0.001876 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.61 | 0.00021 |
S | 20 | T20N | aCc | aAc | 2 | 2 | AY.67 | 0.000929 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.69 | 0.000373 |
S | 20 | T20I | aCC | aTT | 1 | 2 | AY.75.1 | 0.00018 |
S | 20 | T20I | aCc | aTc | 1 | 2 | AY.75.1 | 0.00018 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.84 | 0.000875 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.9.2 | 0.000073 |
S | 20 | T20N | aCc | aAc | 2 | 2 | AY.9.2 | 0.000073 |
S | 20 | T20T | acC | acT | 2 | 2 | AY.91 | 0.001461 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.95 | 0.001522 |
S | 20 | T20I | aCc | aTc | 2 | 2 | AY.98.1 | 0.000097 |
S | 20 | T20N | aCc | aAc | 2 | 2 | AY.99.2 | 0.000184 |
S | 20 | T20P | Acc | Ccc | 2 | 2 | B.1 | 0.000018 |
S | 20 | T20del | ACC | --- | 2 | 2 | B.1 | 0.000018 |
S | 20 | T20S | aCc | aGc | 1 | 2 | B.1.1 | 0.000018 |
S | 20 | T20S | Acc | Tcc | 1 | 2 | B.1.1 | 0.000018 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.1.161 | 0.007067 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.1.207 | 0.002364 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.1.273 | 0.013514 |
S | 20 | T20P | Acc | Ccc | 2 | 2 | B.1.1.28 | 0.000622 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.1.318 | 0.000604 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.1.326 | 0.003521 |
S | 20 | T20N | aCc | aAc | 2 | 2 | B.1.1.332 | 0.0625 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.1.389 | 0.012121 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.1.39 | 0.001019 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.1.39 | 0.001019 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.1.466 | 0.017391 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.1.63 | 0.000772 |
S | 20 | T20del1 | aCc | a-c | 2 | 2 | B.1.1.7 | 0.000002 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.1.70 | 0.000682 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.103 | 0.038462 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.118 | 0.013423 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.126 | 0.002551 |
S | 20 | T20T | acC | acA | 1 | 2 | B.1.157 | 0.002985 |
S | 20 | T20T | acC | acT | 1 | 2 | B.1.157 | 0.002985 |
S | 20 | T20A | Acc | Gcc | 2 | 2 | B.1.160 | 0.000062 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.160.8 | 0.002577 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.177.15 | 0.001262 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.177.2 | 0.009091 |
S | 20 | T20T | acC | acG | 1 | 2 | B.1.177.33 | 0.001645 |
S | 20 | T20T | acC | acT | 1 | 2 | B.1.177.33 | 0.001645 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.177.35 | 0.001382 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.177.57 | 0.000562 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.177.58 | 0.002663 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.177.7 | 0.00033 |
S | 20 | T20N | aCc | aAc | 2 | 2 | B.1.177.73 | 0.001133 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.177.75 | 0.002081 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.177.82 | 0.000955 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.177.86 | 0.000367 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.210 | 0.004264 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.22 | 0.002635 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.221.4 | 0.008333 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.232 | 0.001075 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.258.4 | 0.006897 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.313 | 0.013158 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.36.10 | 0.009569 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.36.18 | 0.00084 |
S | 20 | T20N | aCc | aAc | 2 | 2 | B.1.36.27 | 0.001527 |
S | 20 | T20N | aCc | aAc | 2 | 2 | B.1.369 | 0.00057 |
S | 20 | T20T | acC | acA | 1 | 2 | B.1.391 | 0.001127 |
S | 20 | T20T | acC | acT | 1 | 2 | B.1.391 | 0.001127 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.396 | 0.001411 |
S | 20 | T20del | ACC | --- | 2 | 2 | B.1.429 | 0.000047 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.466.1 | 0.014388 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.468 | 0.011429 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.470 | 0.002809 |
S | 20 | T20N | aCc | aAc | 2 | 2 | B.1.517 | 0.000854 |
S | 20 | T20N | aCc | aAc | 2 | 2 | B.1.526 | 0.000047 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.549 | 0.014388 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.551 | 0.002581 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.565 | 0.001621 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.576 | 0.001813 |
S | 20 | T20I | aCc | aTc | 2 | 2 | B.1.621.1 | 0.001012 |
S | 20 | T20T | acC | acT | 2 | 2 | B.1.623 | 0.001073 |
S | 20 | T20T | acC | acT | 2 | 2 | B.40 | 0.000729 |
S | 20 | T20N | aCc | aAc | 2 | 2 | C.37.1 | 0.005236 |
S | 20 | T20T | acC | acT | 2 | 2 | P.1 | 0.000032 |
S | 20 | T20I | aCc | aTc | 2 | 2 | P.1.1 | 0.000635 |
S | 20 | T20T | acC | acT | 2 | 2 | Q.4 | 0.00091 |
S | 20 | T20T | acC | acT | 2 | 2 | Y.1 | 0.025641 |
S | 20 | T20P | Acc | Ccc | 1 | 1 | A.2 | 0.000662 |
S | 20 | T20del | ACC | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 20 | T20I | aCc | aTc | 1 | 1 | A.23.1 | 0.000704 |
S | 20 | T20T | acC | acT | 1 | 1 | A.27 | 0.001656 |
S | 20 | T20I | aCc | aTc | 1 | 1 | A.4 | 0.012821 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AE.8 | 0.000489 |
S | 20 | T20V | ACc | GTc | 1 | 1 | All | 0 |
S | 20 | T20H | ACc | CAc | 1 | 1 | All | 0 |
S | 20 | T20T | acC | acT | 1 | 1 | AU.1 | 0.001266 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.10 | 0.00053 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.100 | 0.000046 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.100 | 0.000046 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.101 | 0.00049 |
S | 20 | T20S | aCc | aGc | 1 | 1 | AY.103 | 0.000006 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.104 | 0.001984 |
S | 20 | T20T | acC | acA | 1 | 1 | AY.113 | 0.000142 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.114 | 0.000231 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.116.1 | 0.000311 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | AY.117 | 0.000085 |
S | 20 | T20S | aCc | aGc | 1 | 1 | AY.120.1 | 0.000321 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.120.2 | 0.001285 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 20 | T20T | acC | acA | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.13 | 0.000161 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.14 | 0.000088 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.16 | 0.00038 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.16 | 0.00038 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.19 | 0.00114 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.23.1 | 0.000417 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.25 | 0.000006 |
S | 20 | T20S | aCc | aGc | 1 | 1 | AY.26 | 0.000028 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.26 | 0.000028 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.29 | 0.000016 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.29 | 0.000016 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.3 | 0.00001 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.32 | 0.000532 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.32 | 0.000532 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.34 | 0.000097 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.34.1 | 0.00051 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.36 | 0.000148 |
S | 20 | T20T | acC | acA | 1 | 1 | AY.39.1.1 | 0.000725 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.39.2 | 0.001541 |
S | 20 | T20P | Acc | Ccc | 1 | 1 | AY.4 | 0.000002 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | AY.4.2 | 0.000022 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.4.4 | 0.000409 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.42 | 0.00004 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.42 | 0.00004 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | AY.44 | 0.000006 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.46 | 0.000104 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.46.1 | 0.001027 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.46.1 | 0.001027 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.46.4 | 0.000165 |
S | 20 | T20S | Acc | Tcc | 1 | 1 | AY.5 | 0.000021 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.5.3 | 0.000337 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.5.3 | 0.000337 |
S | 20 | T20T | acC | acA | 1 | 1 | AY.5.3 | 0.000337 |
S | 20 | T20I | aCC | aTT | 1 | 1 | AY.51 | 0.000909 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.52 | 0.000814 |
S | 20 | T20T | acC | acA | 1 | 1 | AY.53 | 0.000288 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.54 | 0.000095 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.56 | 0.001605 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.57 | 0.000656 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.6 | 0.000041 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | AY.60 | 0.000938 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.65 | 0.000533 |
S | 20 | T20T | acC | acA | 1 | 1 | AY.66 | 0.00107 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.68 | 0.000274 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.68 | 0.000274 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.68 | 0.000274 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.7.1 | 0.000113 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.70 | 0.000209 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.72 | 0.001361 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.74 | 0.000116 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | AY.75.1 | 0.00018 |
S | 20 | T20S | Acc | Tcc | 1 | 1 | AY.78 | 0.001541 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.79 | 0.001211 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.82 | 0.001357 |
S | 20 | T20T | acC | acA | 1 | 1 | AY.84 | 0.000437 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.86 | 0.00083 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.87 | 0.000833 |
S | 20 | T20T | acC | acA | 1 | 1 | AY.88 | 0.000884 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.91 | 0.00073 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.92 | 0.000287 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.92 | 0.000287 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | AY.95 | 0.000761 |
S | 20 | T20T | acC | acT | 1 | 1 | AY.96 | 0.002075 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.97 | 0.001701 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.98 | 0.000079 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | AY.98 | 0.000079 |
S | 20 | T20del | ACC | --- | 1 | 1 | AY.98 | 0.000079 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | AY.98.1 | 0.000048 |
S | 20 | T20N | aCc | aAc | 1 | 1 | AY.98.1 | 0.000048 |
S | 20 | T20I | aCc | aTc | 1 | 1 | AY.99.2 | 0.000092 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B | 0.000128 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B | 0.000128 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B | 0.000128 |
S | 20 | T20V | ACc | GTc | 1 | 1 | B | 0.000128 |
S | 20 | T20S | Acc | Tcc | 1 | 1 | B | 0.000128 |
S | 20 | T20S | Acc | Tcc | 1 | 1 | B.1 | 0.000009 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.10 | 0.001115 |
S | 20 | T20P | Acc | Ccc | 1 | 1 | B.1.1.117 | 0.009709 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.1.117 | 0.009709 |
S | 20 | T20K | aCC | aAA | 1 | 1 | B.1.1.141 | 0.002012 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.141 | 0.002012 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.15 | 0.013514 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.153 | 0.001095 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.1.157 | 0.000913 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.1.161 | 0.003534 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.172 | 0.018182 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.174 | 0.003378 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.177 | 0.019231 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.1.189 | 0.001513 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.197 | 0.037037 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.198 | 0.001468 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.204 | 0.00304 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.1.220 | 0.001859 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.228 | 0.003049 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.232 | 0.001815 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.234 | 0.012048 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.1.236 | 0.006897 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.241 | 0.00207 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.263 | 0.001558 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.268 | 0.014925 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.277 | 0.000759 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.1.1.284 | 0.000107 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.289 | 0.002083 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.291 | 0.000742 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.301 | 0.001179 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.304 | 0.002809 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.1.306 | 0.000438 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.311 | 0.000358 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.315 | 0.008475 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.317 | 0.000412 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.323 | 0.014085 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.1.33 | 0.000421 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.347 | 0.018182 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.349 | 0.010309 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.371 | 0.010417 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.376 | 0.005952 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.379 | 0.03125 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.386 | 0.066667 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.388 | 0.045455 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.389 | 0.006061 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.1.39 | 0.00051 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.396 | 0.045455 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.397 | 0.002252 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.398 | 0.003226 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.1.401 | 0.066667 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.402 | 0.011111 |
S | 20 | T20F | ACC | TTT | 1 | 1 | B.1.1.411 | 0.014706 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.1.411 | 0.014706 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.413 | 0.006897 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.420 | 0.001006 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.433 | 0.001425 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.44 | 0.00241 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.448 | 0.002033 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.49 | 0.017544 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.51 | 0.001718 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.1.518 | 0.006329 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.1.59 | 0.006494 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.1.61 | 0.008772 |
S | 20 | T20F | ACc | TTc | 1 | 1 | B.1.1.7 | 0.000001 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.1.8 | 0.003584 |
S | 20 | T20S | Acc | Tcc | 1 | 1 | B.1.110.3 | 0.000718 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.111 | 0.001175 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.12 | 0.008 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.127 | 0.002198 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.139 | 0.000733 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.160.28 | 0.002924 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.160.28 | 0.002924 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.162 | 0.005025 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.1.177 | 0.000013 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.177 | 0.000013 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.177.12 | 0.000152 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.177.16 | 0.000664 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.177.18 | 0.00116 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.177.31 | 0.011494 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.177.39 | 0.015385 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.177.41 | 0.0025 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.177.43 | 0.001477 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.177.45 | 0.000381 |
S | 20 | T20S | aCc | aGc | 1 | 1 | B.1.177.50 | 0.004695 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.177.53 | 0.002392 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.177.54 | 0.000606 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.1.177.54 | 0.000606 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.177.69 | 0.001484 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.177.7 | 0.000165 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.177.73 | 0.000566 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.177.80 | 0.001912 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.177.81 | 0.000189 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.177.86 | 0.000183 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.178 | 0.02381 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.2 | 0.000009 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.214 | 0.003663 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 20 | T20S | Acc | Tcc | 1 | 1 | B.1.221 | 0.000071 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.223 | 0.002778 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.235 | 0.002519 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.239 | 0.001221 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.241 | 0.000812 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.260 | 0.003344 |
S | 20 | T20del1 | aCc | a-c | 1 | 1 | B.1.289 | 0.00266 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.293 | 0.0125 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.305 | 0.002151 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.311 | 0.000275 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.311 | 0.000275 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.311 | 0.000275 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.320 | 0.001245 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.349 | 0.000715 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.350 | 0.002933 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 20 | T20S | aCc | aGc | 1 | 1 | B.1.351 | 0.00003 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.1.351 | 0.00003 |
S | 20 | T20del1 | ACc | G-c | 1 | 1 | B.1.351 | 0.00003 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.351.3 | 0.000876 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.351.3 | 0.000876 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.36.16 | 0.001425 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.36.18 | 0.00042 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.36.2 | 0.010753 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.36.22 | 0.001208 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.36.27 | 0.000763 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.36.29 | 0.000517 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.36.29 | 0.000517 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.36.38 | 0.001642 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.36.39 | 0.002217 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.36.8 | 0.001 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.362 | 0.001541 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.366 | 0.004878 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.375 | 0.00082 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.377 | 0.004566 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.399 | 0.001934 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.404 | 0.001302 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.1.409 | 0.000781 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.409 | 0.000781 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.415 | 0.014286 |
S | 20 | T20T | acC | acA | 1 | 1 | B.1.416.1 | 0.001563 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.422 | 0.000812 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.425 | 0.002994 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.426 | 0.001009 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 20 | T20S | aCc | aGc | 1 | 1 | B.1.429 | 0.000024 |
S | 20 | T20P | Acc | Ccc | 1 | 1 | B.1.429 | 0.000024 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.429 | 0.000024 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.1.433 | 0.003195 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.438.1 | 0.000107 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.470 | 0.001404 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.497 | 0.000315 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.507 | 0.011236 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.525 | 0.000113 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.533 | 0.009615 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.541 | 0.004425 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.544 | 0.006024 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.546 | 0.003704 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.560 | 0.00463 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.568 | 0.001111 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.577 | 0.000687 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.577 | 0.000687 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.577 | 0.000687 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.597 | 0.00463 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.609 | 0.000479 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.612 | 0.002653 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 20 | T20S | Acc | Tcc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.619.1 | 0.000641 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.620 | 0.000946 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.1.623 | 0.000536 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.1.623 | 0.000536 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.623 | 0.000536 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.625 | 0.002353 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.625 | 0.002353 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.628 | 0.000352 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.630 | 0.005236 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.1.631 | 0.003367 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.631 | 0.003367 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.78 | 0.008547 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.8 | 0.001972 |
S | 20 | T20T | acC | acT | 1 | 1 | B.1.9.4 | 0.006135 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.11 | 0.005128 |
S | 20 | T20T | acC | acT | 1 | 1 | B.23 | 0.002924 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.23 | 0.002924 |
S | 20 | T20N | aCc | aAc | 1 | 1 | B.3 | 0.000831 |
S | 20 | T20T | acC | acT | 1 | 1 | B.3 | 0.000831 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.3.1 | 0.001658 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.34 | 0.013699 |
S | 20 | T20T | acC | acT | 1 | 1 | B.39 | 0.002331 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.4 | 0.002208 |
S | 20 | T20I | aCc | aTc | 1 | 1 | B.4.1 | 0.018868 |
S | 20 | T20A | Acc | Gcc | 1 | 1 | B.6.6 | 0.000889 |
S | 20 | T20del | ACC | --- | 1 | 1 | B.61 | 0.005747 |
S | 20 | T20T | acC | acT | 1 | 1 | C.1 | 0.002392 |
S | 20 | T20I | aCc | aTc | 1 | 1 | C.1.2 | 0.004255 |
S | 20 | T20N | aCc | aAc | 1 | 1 | C.16 | 0.00106 |
S | 20 | T20N | aCc | aAc | 1 | 1 | C.35 | 0.000774 |
S | 20 | T20I | aCc | aTc | 1 | 1 | C.35 | 0.000774 |
S | 20 | T20T | acC | acT | 1 | 1 | C.36 | 0.000911 |
S | 20 | T20del | ACC | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 20 | T20T | acC | acT | 1 | 1 | C.36.3 | 0.000567 |
S | 20 | T20P | Acc | Ccc | 1 | 1 | C.4 | 0.01 |
S | 20 | T20P | Acc | Ccc | 1 | 1 | D.2 | 0.000075 |
S | 20 | T20T | acC | acT | 1 | 1 | N.10 | 0.029412 |
S | 20 | T20H | ACc | CAc | 1 | 1 | P.1 | 0.000016 |
S | 20 | T20I | aCc | aTc | 1 | 1 | P.1 | 0.000016 |
S | 20 | T20S | aCc | aGc | 1 | 1 | P.1.17 | 0.000162 |
S | 20 | T20T | acC | acA | 1 | 1 | P.3 | 0.001595 |
S | 20 | T20N | aCc | aAc | 1 | 1 | P.7 | 0.004367 |
S | 20 | T20P | Acc | Ccc | 1 | 1 | Q.1 | 0.000126 |
S | 20 | T20N | aCc | aAc | 1 | 1 | Q.3 | 0.000145 |
S | 20 | T20N | aCc | aAc | 1 | 1 | Q.4 | 0.000455 |
S | 20 | T20T | acC | acT | 1 | 1 | R.1 | 0.00009 |
S | 20 | T20T | acC | acT | 1 | 1 | U.2 | 0.008772 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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