CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 198

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S198D198GnonsyngAtgGt105310510.99810122154-22156
S198D198GnonsyngATgGA105320.0018993422154-22156
S198D198DsyngaTgaC673673122154-22156
S198D198YnonsynGatTat464464122154-22156
S198D198deldelGAT---177177122154-22156
S198D198HnonsynGatCat134134122154-22156
S198D198AnonsyngAtgCt4444122154-22156
S198D198VnonsyngAtgTt34330.97058822154-22156
S198D198VnonsyngATgTG3410.029411822154-22156
S198D198NnonsynGatAat2828122154-22156
S198D198EnonsyngaTgaG21130.61904822154-22156
S198D198EnonsyngaTgaA2180.38095222154-22156
S198D198del1delGat-at740.57142922154-22156
S198D198del1delgaTga-730.42857122154-22156
S198D198CnonsynGAtTGt22122154-22156
S198D198del2delgATg--210.522154-22156
S198D198del2delGAt--t210.522154-22156
S198D198XnonsynGATTGA210.522154-22156
S198D198XnonsynGaTTaA210.522154-22156

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S198D198GgAtgGt10511053All0.000201
S198D198GgATgGA21053All0
S198D198DgaTgaC673673All0.000129
S198D198YGatTat464464All0.000089
S198D198GgAtgGt342342B.1.20.003011
S198D198DgaTgaC200200B.1.1.3060.087681
S198D198delGAT---177177All0.000034
S198D198GgAtgGt172172B.1.1.1960.982857
S198D198YGatTat164164B.1.1.70.000147
S198D198GgAtgGt161161AY.40.000251
S198D198HGatCat134134All0.000026
S198D198DgaTgaC111111B.1.1.70.000099
S198D198GgAtgGt6565B.1.1.70.000058
S198D198HGatCat4848AY.1030.000298
S198D198YGatTat4545AY.620.019608
S198D198AgAtgCt4444All0.000008
S198D198delGAT---4343B.1.1.70.000038
S198D198YGatTat4141AY.40.000064
S198D198DgaTgaC3939B.10.000357
S198D198DgaTgaC3838B.1.2410.030844
S198D198VgAtgTt3334All0.000006
S198D198VgATgTG134All0
S198D198DgaTgaC3434AY.340.003297
S198D198GgAtgGt2829B.1.617.20.000105
S198D198GgATgGA129B.1.617.20.000004
S198D198NGatAat2828All0.000005
S198D198GgAtgGt2626AY.430.000115
S198D198DgaTgaC2626AY.440.000158
S198D198GgAtgGt2626B.1.1.4831
S198D198DgaTgaC2424AY.40.000037
S198D198DgaTgaC2424B.1.5380.193548
S198D198YGatTat2323B.1.20.000203
S198D198EgaTgaG1321All0.000002
S198D198EgaTgaA821All0.000002
S198D198HGatCat1919B.1.617.20.000072
S198D198YGatTat1919B.1.617.20.000072
S198D198HGatCat1717AY.40.000026
S198D198YGatTat1717AY.440.000103
S198D198GgAtgGt1717B.1.1.10.005554
S198D198GgAtgGt1616B.1.6210.001416
S198D198GgAtgGt1515AY.1020.000398
S198D198delGAT---1414AY.430.000062
S198D198AgAtgCt1414B.1.1.70.000013
S198D198VgAtgTt1313AY.40.00002
S198D198YGatTat1313AY.740.001503
S198D198delGAT---1212B.10.00011
S198D198DgaTgaC1212B.1.1.5210.064171
S198D198GgAtgGt1212B.1.177.440.006227
S198D198YGatTat1111AY.420.000443
S198D198YGatTat1111AY.430.000049
S198D198YGatTat1111AY.50.000227
S198D198DgaTgaC1111P.10.000173
S198D198GgAtgGt1010AY.260.000283
S198D198GgAtgGt1010AY.99.20.000922
S198D198delGAT---1010B.1.1770.000132
S198D198DgaTgaC1010B.1.617.20.000038
S198D198DgaTgaC99AY.390.000222
S198D198delGAT---99AY.40.000014
S198D198YGatTat99AY.9.20.000331
S198D198DgaTgaC99B.1.10.000163
S198D198GgAtgGt99B.1.1.3090.052632
S198D198DgaTgaC99B.1.2580.000599
S198D198GgAtgGt99B.1.5260.000212
S198D198delGAT---99P.1.150.002091
S198D198GgAtgGt88AY.1190.000282
S198D198HGatCat88AY.430.000035
S198D198DgaTgaC88B.1.20.00007
S198D198del1Gat-at47All0.000001
S198D198del1gaTga-37All0.000001
S198D198DgaTgaC77AY.200.000272
S198D198GgAtgGt77AY.30.00007
S198D198GgAtgGt77AY.390.000173
S198D198delGAT---77P.10.00011
S198D198DgaTgaC66AY.250.000036
S198D198delGAT---66AY.250.000036
S198D198DgaTgaC66AY.30.00006
S198D198delGAT---66AY.4.50.000645
S198D198YGatTat66B.10.000055
S198D198GgAtgGt66B.10.000055
S198D198GgAtgGt66B.1.1.470.032086
S198D198EgaTgaG56B.1.1.70.000004
S198D198EgaTgaA16B.1.1.70.000001
S198D198YGatTat66B.1.2580.000399
S198D198DgaTgaC66B.1.5260.000141
S198D198delGAT---66C.370.000696
S198D198GgAtgGt55AY.1030.000031
S198D198YGatTat55AY.1030.000031
S198D198NGatAat55AY.40.000008
S198D198VgAtgTt55AY.4.50.000537
S198D198DgaTgaC55AY.430.000022
S198D198GgAtgGt55B.1.10.000091
S198D198YGatTat55B.1.3510.000149
S198D198YGatTat55B.1.4290.000118
S198D198NGatAat440.222222
S198D198YGatTat44AY.250.000024
S198D198HGatCat44AY.260.000113
S198D198YGatTat44AY.30.00004
S198D198HGatCat44AY.420.000161
S198D198HGatCat44B.1.1.70.000004
S198D198YGatTat44B.1.214.20.002398
S198D198DgaTgaC44B.1.360.000584
S198D198DgaTgaC44B.1.4270.000202
S198D198AgAtgCt33AY.1030.000019
S198D198DgaTgaC33AY.1030.000019
S198D198DgaTgaC33AY.1110.000549
S198D198GgAtgGt33AY.330.0002
S198D198DgaTgaC33AY.360.000445
S198D198del1Gat-at33AY.40.000005
S198D198HGatCat33AY.4.20.000065
S198D198GgAtgGt33AY.4.30.002525
S198D198AgAtgCt33AY.430.000013
S198D198HGatCat33AY.440.000018
S198D198AgAtgCt33AY.5.40.00083
S198D198VgAtgTt33AY.80.001818
S198D198GgAtgGt33AY.930.000819
S198D198NGatAat33AY.99.20.000276
S198D198GgAtgGt33B.1.1.2220.000612
S198D198GgAtgGt33B.1.1.2310.009288
S198D198AgAtgCt33B.1.1.5190.000119
S198D198GgAtgGt33B.1.1600.000094
S198D198YGatTat33B.1.177.350.002073
S198D198HGatCat33B.1.20.000026
S198D198AgAtgCt33B.1.20.000026
S198D198DgaTgaC33B.1.3510.000089
S198D198GgAtgGt33B.1.5960.000261
S198D198delGAT---33B.1.617.20.000011
S198D198AgAtgCt33B.1.617.20.000011
S198D198DgaTgaC22A.2.50.000998
S198D198DgaTgaC22AE.60.076923
S198D198CGAtTGt22All0
S198D198del2gATg--12All0
S198D198XGATTGA12All0
S198D198XGaTTaA12All0
S198D198del2GAt--t12All0
S198D198DgaTgaC22AY.1020.000053
S198D198EgaTgaA12AY.1030.000006
S198D198EgaTgaG12AY.1030.000006
S198D198YGatTat22AY.1200.000074
S198D198delGAT---22AY.1200.000074
S198D198GgAtgGt22AY.140.000176
S198D198GgAtgGt22AY.250.000012
S198D198DgaTgaC22AY.260.000057
S198D198YGatTat22AY.260.000057
S198D198YGatTat22AY.290.000032
S198D198GgAtgGt22AY.29.10.000441
S198D198YGatTat22AY.380.000999
S198D198HGatCat22AY.39.10.000079
S198D198GgAtgGt22AY.39.10.000079
S198D198AgAtgCt22AY.40.000003
S198D198delGAT---22AY.440.000012
S198D198GgAtgGt22AY.440.000012
S198D198GgAtgGt22AY.460.000208
S198D198delGAT---22AY.46.20.001271
S198D198GgAtgGt22AY.470.000062
S198D198YGatTat22AY.5.40.000553
S198D198GgAtgGt22AY.780.003082
S198D198GgAtgGt22AY.870.001665
S198D198HGatCat22AY.98.10.000097
S198D198YGatTat22AY.99.20.000184
S198D198EgaTgaA12B.10.000009
S198D198EgaTgaG12B.10.000009
S198D198delGAT---22B.1.10.000036
S198D198DgaTgaC22B.1.1.330.000842
S198D198VgAtgTt22B.1.1.70.000002
S198D198NGatAat22B.1.1.70.000002
S198D198VgATgTG12B.1.1050.009615
S198D198VgAtgTt12B.1.1050.009615
S198D198HGatCat22B.1.1770.000026
S198D198GgAtgGt22B.1.1770.000026
S198D198DgaTgaC22B.1.1770.000026
S198D198delGAT---22B.1.20.000018
S198D198YGatTat22B.1.2210.000142
S198D198VgAtgTt22B.1.2210.000142
S198D198GgAtgGt22B.1.3510.000059
S198D198GgAtgGt22B.1.3690.00057
S198D198GgATgGA12B.1.3910.001127
S198D198XGATTGA12B.1.3910.001127
S198D198GgAtgGt12B.1.3910.001127
S198D198XGaTTaA12B.1.3910.001127
S198D198YGatTat22B.1.4270.000101
S198D198GgAtgGt22B.1.4290.000047
S198D198GgAtgGt22B.1.5240.002813
S198D198DgaTgaC22B.1.5250.000226
S198D198DgaTgaC22B.1.5510.002581
S198D198GgAtgGt22B.1.6190.001742
S198D198delGAT---22B.1.6210.000177
S198D198YGatTat22C.36.30.001134
S198D198DgaTgaC22C.370.000232
S198D198GgAtgGt22D.20.00015
S198D198DgaTgaC22Q.80.00033
S198D198YGatTat22Q.80.00033
S198D198GgAtgGt110.055556
S198D198EgaTgaA110.055556
S198D198NGatAat11A.10.000282
S198D198CGAtTGt11A.20.000662
S198D198VgAtgTt11A.2.40.003367
S198D198delGAT---11A.2.50.000499
S198D198GgAtgGt11A.2.50.000499
S198D198YGatTat11AD.20.000219
S198D198DgaTgaC11AE.40.043478
S198D198del1Gat-at11AM.30.033333
S198D198YGatTat11AY.100.00053
S198D198HGatCat11AY.1000.000046
S198D198delGAT---11AY.1000.000046
S198D198delGAT---11AY.1010.00049
S198D198NGatAat11AY.1020.000027
S198D198AgAtgCt11AY.1020.000027
S198D198YGatTat11AY.1020.000027
S198D198delGAT---11AY.1020.000027
S198D198GgAtgGt11AY.1060.000335
S198D198DgaTgaC11AY.1060.000335
S198D198YGatTat11AY.1080.001103
S198D198YGatTat11AY.1140.000231
S198D198YGatTat11AY.116.10.000311
S198D198GgAtgGt11AY.1170.000085
S198D198YGatTat11AY.1190.000035
S198D198DgaTgaC11AY.1190.000035
S198D198GgAtgGt11AY.1200.000037
S198D198DgaTgaC11AY.120.10.000321
S198D198YGatTat11AY.120.10.000321
S198D198NGatAat11AY.130.000161
S198D198HGatCat11AY.160.00038
S198D198GgAtgGt11AY.16.10.00047
S198D198YGatTat11AY.200.000039
S198D198HGatCat11AY.230.00007
S198D198GgAtgGt11AY.230.00007
S198D198NGatAat11AY.230.00007
S198D198DgaTgaC11AY.230.00007
S198D198VgAtgTt11AY.23.10.000417
S198D198GgAtgGt11AY.23.10.000417
S198D198delGAT---11AY.240.000431
S198D198HGatCat11AY.250.000006
S198D198delGAT---11AY.290.000016
S198D198GgAtgGt11AY.290.000016
S198D198delGAT---11AY.30.00001
S198D198AgAtgCt11AY.30.00001
S198D198GgAtgGt11AY.3.10.000085
S198D198DgaTgaC11AY.300.000396
S198D198EgaTgaA11AY.34.10.00051
S198D198YGatTat11AY.350.000233
S198D198DgaTgaC11AY.350.000233
S198D198GgAtgGt11AY.360.000148
S198D198YGatTat11AY.390.000025
S198D198NGatAat11AY.390.000025
S198D198GgAtgGt11AY.4.20.000022
S198D198YGatTat11AY.4.50.000107
S198D198DgaTgaC11AY.4.50.000107
S198D198DgaTgaC11AY.420.00004
S198D198EgaTgaG11AY.420.00004
S198D198GgAtgGt11AY.420.00004
S198D198del2gATg--11AY.430.000004
S198D198YGatTat11AY.450.000122
S198D198DgaTgaC11AY.460.000104
S198D198HGatCat11AY.460.000104
S198D198HGatCat11AY.46.60.000072
S198D198delGAT---11AY.470.000031
S198D198YGatTat11AY.470.000031
S198D198HGatCat11AY.470.000031
S198D198DgaTgaC11AY.470.000031
S198D198DgaTgaC11AY.50.000021
S198D198DgaTgaC11AY.540.000095
S198D198GgAtgGt11AY.550.000917
S198D198YGatTat11AY.550.000917
S198D198GgAtgGt11AY.590.00053
S198D198NGatAat11AY.590.00053
S198D198HGatCat11AY.60.000041
S198D198YGatTat11AY.600.000938
S198D198AgAtgCt11AY.690.000187
S198D198NGatAat11AY.690.000187
S198D198EgaTgaG11AY.690.000187
S198D198DgaTgaC11AY.70.000196
S198D198YGatTat11AY.70.000196
S198D198YGatTat11AY.7.10.000113
S198D198GgAtgGt11AY.740.000116
S198D198YGatTat11AY.750.000056
S198D198NGatAat11AY.750.000056
S198D198DgaTgaC11AY.860.00083
S198D198VgAtgTt11AY.870.000833
S198D198VgAtgTt11AY.90.000068
S198D198delGAT---11AY.90.000068
S198D198HGatCat11AY.9.10.000084
S198D198del1gaTga-11AY.9.20.000037
S198D198DgaTgaC11AY.9.20.000037
S198D198DgaTgaC11AY.9.2.10.001976
S198D198delGAT---11AY.960.002075
S198D198YGatTat11AY.980.000079
S198D198GgAtgGt11AY.98.10.000048
S198D198delGAT---11AY.99.10.001553
S198D198DgaTgaC11AY.99.20.000092
S198D198delGAT---11B0.000128
S198D198GgAtgGt11B0.000128
S198D198NGatAat11B0.000128
S198D198NGatAat11B.10.000009
S198D198YGatTat11B.1.10.000018
S198D198YGatTat11B.1.1.1390.022727
S198D198DgaTgaC11B.1.1.1570.000913
S198D198delGAT---11B.1.1.1700.001247
S198D198DgaTgaC11B.1.1.2140.000055
S198D198GgAtgGt11B.1.1.2840.000107
S198D198delGAT---11B.1.1.3110.000358
S198D198delGAT---11B.1.1.3120.001912
S198D198delGAT---11B.1.1.3150.008475
S198D198GgAtgGt11B.1.1.3160.000925
S198D198YGatTat11B.1.1.330.000421
S198D198GgAtgGt11B.1.1.370.000193
S198D198YGatTat11B.1.1.3720.000689
S198D198YGatTat11B.1.1.3850.004464
S198D198YGatTat11B.1.1.390.00051
S198D198YGatTat11B.1.1.4160.000905
S198D198DgaTgaC11B.1.1.4340.000349
S198D198DgaTgaC11B.1.1.5190.00004
S198D198YGatTat11B.1.1.630.000386
S198D198del1gaTga-11B.1.1.70.000001
S198D198delGAT---11B.1.1.700.000341
S198D198EgaTgaG11B.1.1050.009615
S198D198delGAT---11B.1.1400.018868
S198D198GgAtgGt11B.1.1400.018868
S198D198HGatCat11B.1.1600.000031
S198D198del1gaTga-11B.1.1600.000031
S198D198VgAtgTt11B.1.1600.000031
S198D198AgAtgCt11B.1.160.140.002119
S198D198delGAT---11B.1.160.230.004831
S198D198YGatTat11B.1.1770.000013
S198D198delGAT---11B.1.177.100.000878
S198D198YGatTat11B.1.177.120.000152
S198D198GgAtgGt11B.1.177.120.000152
S198D198delGAT---11B.1.177.160.000664
S198D198del2GAt--t11B.1.177.160.000664
S198D198delGAT---11B.1.177.180.00116
S198D198HGatCat11B.1.177.210.000076
S198D198YGatTat11B.1.177.210.000076
S198D198NGatAat11B.1.177.420.000894
S198D198delGAT---11B.1.177.540.000606
S198D198GgAtgGt11B.1.177.560.000668
S198D198delGAT---11B.1.177.570.000281
S198D198delGAT---11B.1.177.60.000977
S198D198delGAT---11B.1.177.620.001192
S198D198delGAT---11B.1.177.690.001484
S198D198GgAtgGt11B.1.177.70.000165
S198D198DgaTgaC11B.1.177.730.000566
S198D198DgaTgaC11B.1.1950.005025
S198D198DgaTgaC11B.1.2060.000816
S198D198NGatAat11B.1.214.20.0006
S198D198delGAT---11B.1.2180.005155
S198D198delGAT---11B.1.2210.000071
S198D198GgAtgGt11B.1.2210.000071
S198D198DgaTgaC11B.1.221.20.004016
S198D198NGatAat11B.1.2220.001692
S198D198GgAtgGt11B.1.2340.000132
S198D198AgAtgCt11B.1.2430.00007
S198D198GgAtgGt11B.1.2580.000067
S198D198delGAT---11B.1.2580.000067
S198D198YGatTat11B.1.258.170.000104
S198D198delGAT---11B.1.258.30.001675
S198D198DgaTgaC11B.1.3370.005587
S198D198GgAtgGt11B.1.3400.004292
S198D198DgaTgaC11B.1.351.20.000303
S198D198HGatCat11B.1.351.50.0006
S198D198GgAtgGt11B.1.360.000146
S198D198EgaTgaG11B.1.360.000146
S198D198GgAtgGt11B.1.36.160.001425
S198D198AgAtgCt11B.1.36.170.000494
S198D198delGAT---11B.1.36.180.00042
S198D198GgAtgGt11B.1.36.290.000517
S198D198DgaTgaC11B.1.36.290.000517
S198D198EgaTgaG11B.1.36.290.000517
S198D198EgaTgaG11B.1.36.350.002604
S198D198AgAtgCt11B.1.3670.000792
S198D198YGatTat11B.1.3910.001127
S198D198CGAtTGt11B.1.3910.001127
S198D198EgaTgaA11B.1.3910.001127
S198D198delGAT---11B.1.4090.000781
S198D198EgaTgaA11B.1.438.10.000107
S198D198AgAtgCt11B.1.4700.001404
S198D198DgaTgaC11B.1.5160.001957
S198D198DgaTgaC11B.1.5330.009615
S198D198delGAT---11B.1.5610.000397
S198D198DgaTgaC11B.1.5700.002941
S198D198AgAtgCt11B.1.5750.000303
S198D198VgAtgTt11B.1.5960.000087
S198D198YGatTat11B.1.6020.006536
S198D198GgAtgGt11B.1.6090.000479
S198D198GgAtgGt11B.1.617.10.000129
S198D198DgaTgaC11B.1.617.10.000129
S198D198delGAT---11B.1.617.10.000129
S198D198delGAT---11B.1.6200.000946
S198D198YGatTat11B.1.6210.000089
S198D198HGatCat11B.1.6280.000352
S198D198AgAtgCt11B.1.6300.005236
S198D198DgaTgaC11B.1.6300.005236
S198D198delGAT---11B.1.6300.005236
S198D198DgaTgaC11B.1.6320.006711
S198D198delGAT---11B.1.6380.052632
S198D198EgaTgaA11B.6.60.000889
S198D198HGatCat11C.1.10.076923
S198D198NGatAat11D.20.000075
S198D198HGatCat11D.20.000075
S198D198YGatTat11D.20.000075
S198D198GgAtgGt11P.10.000016
S198D198YGatTat11P.10.000016
S198D198delGAT---11P.1.10.000318
S198D198DgaTgaC11P.1.10.000318
S198D198VgAtgTt11P.1.10.000318
S198D198DgaTgaC11P.1.140.000048
S198D198DgaTgaC11P.1.150.000232
S198D198DgaTgaC11R.10.00009
S198D198YGatTat11R.10.00009
S198D198delGAT---11U.30.003861