CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 196

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S196N196NsynaaTaaC275275122148-22150
S196N196deldelAAT---176176122148-22150
S196N196YnonsynAatTat2929122148-22150
S196N196SnonsynaAtaGt2323122148-22150
S196N196KnonsynaaTaaA22120.54545522148-22150
S196N196KnonsynaaTaaG22100.45454522148-22150
S196N196InonsynaAtaTt21170.80952422148-22150
S196N196InonsynaATaTA2130.14285722148-22150
S196N196InonsynaATaTC2110.04761922148-22150
S196N196DnonsynAatGat1414122148-22150
S196N196TnonsynaAtaCt1212122148-22150
S196N196HnonsynAatCat1010122148-22150
S196N196del1delAat-at320.66666722148-22150
S196N196del1delAAT-NN310.33333322148-22150
S196N196EnonsynAaTGaA22122148-22150
S196N196del2delaATa--22122148-22150
S196N196AnonsynAAtGCt22122148-22150
S196N196RnonsynaATaGA11122148-22150
S196N196FnonsynAAtTTt11122148-22150
S196N196GnonsynAAtGGt11122148-22150

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S196N196NaaTaaC275275All0.000053
S196N196delAAT---176176All0.000034
S196N196NaaTaaC6868B.1.1770.000895
S196N196NaaTaaC4848B.1.177.790.112412
S196N196delAAT---4242B.1.1.70.000038
S196N196YAatTat2929All0.000006
S196N196NaaTaaC2727B.1.1150.586957
S196N196SaAtaGt2323All0.000004
S196N196KaaTaaA1222All0.000002
S196N196KaaTaaG1022All0.000002
S196N196IaAtaTt1721All0.000003
S196N196IaATaTA321All0.000001
S196N196IaATaTC121All0
S196N196DAatGat1414All0.000003
S196N196NaaTaaC1414AY.440.000085
S196N196NaaTaaC1414B.1.617.20.000053
S196N196TaAtaCt1212All0.000002
S196N196delAAT---1212B.10.00011
S196N196delAAT---1111AY.430.000049
S196N196HAatCat1010All0.000002
S196N196YAatTat1010B.1.1.70.000009
S196N196delAAT---1010B.1.1770.000132
S196N196delAAT---99AY.40.000014
S196N196NaaTaaC99B.1.1.70.000008
S196N196delAAT---99P.1.150.002091
S196N196NaaTaaC88AY.40.000012
S196N196NaaTaaC88B.1.10.000145
S196N196delAAT---88C.370.000929
S196N196NaaTaaC88P.10.000126
S196N196delAAT---77P.10.00011
S196N196NaaTaaC66AY.1020.000159
S196N196delAAT---66AY.4.50.000645
S196N196SaAtaGt66B.1.1.70.000005
S196N196YAatTat66P.10.000095
S196N196SaAtaGt55AY.1030.000031
S196N196NaaTaaC55B.10.000046
S196N196NaaTaaC55B.1.1.4400.058824
S196N196delAAT---44AY.250.000024
S196N196NaaTaaC44AY.430.000018
S196N196KaaTaaG44AY.470.000124
S196N196HAatCat44B.1.20.000035
S196N196del1Aat-at23All0
S196N196del1AAT-NN13All0
S196N196NaaTaaC33AY.1030.000019
S196N196NaaTaaC33AY.9.20.00011
S196N196IaAtaTt33AY.99.20.000276
S196N196YAatTat33AY.99.20.000276
S196N196NaaTaaC33AZ.30.004559
S196N196DAatGat33B.10.000027
S196N196TaAtaCt33B.1.1.70.000003
S196N196delAAT---33B.1.617.20.000011
S196N196AAAtGCt22All0
S196N196del2aATa--22All0
S196N196EAaTGaA22All0
S196N196NaaTaaC22AY.1110.000366
S196N196delAAT---22AY.1200.000074
S196N196NaaTaaC22AY.200.000078
S196N196NaaTaaC22AY.250.000012
S196N196NaaTaaC22AY.260.000057
S196N196NaaTaaC22AY.30.00002
S196N196TaAtaCt22AY.40.000003
S196N196YAatTat22AY.40.000003
S196N196NaaTaaC22AY.420.00008
S196N196TaAtaCt22AY.440.000012
S196N196DAatGat22AY.440.000012
S196N196delAAT---22AY.440.000012
S196N196delAAT---22AY.46.20.001271
S196N196IaATaTC12AY.590.00053
S196N196IaATaTA12AY.590.00053
S196N196NaaTaaC22AY.75.10.000361
S196N196KaaTaaG12B.10.000009
S196N196KaaTaaA12B.10.000009
S196N196delAAT---22B.1.10.000036
S196N196KaaTaaG12B.1.1.70.000001
S196N196KaaTaaA12B.1.1.70.000001
S196N196IaAtaTt12B.1.1050.009615
S196N196IaATaTA12B.1.1050.009615
S196N196KaaTaaA22B.1.1770.000026
S196N196delAAT---22B.1.177.160.001329
S196N196delAAT---22B.1.177.570.000562
S196N196delAAT---22B.1.20.000018
S196N196NaaTaaC22B.1.20.000018
S196N196NaaTaaC22B.1.3510.000059
S196N196SaAtaGt22B.1.617.20.000008
S196N196delAAT---22B.1.6210.000177
S196N196IaAtaTt22B.6.60.001778
S196N196IaAtaTt22C.160.002121
S196N196YAatTat11A.2.50.000499
S196N196delAAT---11A.2.50.000499
S196N196SaAtaGt11A.2.5.10.004808
S196N196GAAtGGt11All0
S196N196RaATaGA11All0
S196N196FAAtTTt11All0
S196N196delAAT---11AY.1000.000046
S196N196delAAT---11AY.1010.00049
S196N196delAAT---11AY.1020.000027
S196N196FAAtTTt11AY.1020.000027
S196N196delAAT---11AY.1030.000006
S196N196IaAtaTt11AY.1030.000006
S196N196HAatCat11AY.1030.000006
S196N196SaAtaGt11AY.1100.000113
S196N196KaaTaaG11AY.1110.000183
S196N196HAatCat11AY.1130.000142
S196N196KaaTaaA11AY.1180.000063
S196N196NaaTaaC11AY.1190.000035
S196N196KaaTaaG11AY.1200.000037
S196N196YAatTat11AY.230.00007
S196N196DAatGat11AY.230.00007
S196N196YAatTat11AY.23.10.000417
S196N196delAAT---11AY.240.000431
S196N196HAatCat11AY.250.000006
S196N196NaaTaaC11AY.270.000065
S196N196delAAT---11AY.290.000016
S196N196delAAT---11AY.30.00001
S196N196IaAtaTt11AY.3.10.000085
S196N196YAatTat11AY.390.000025
S196N196NaaTaaC11AY.390.000025
S196N196AAAtGCt11AY.40.000002
S196N196SaAtaGt11AY.40.000002
S196N196IaAtaTt11AY.40.000002
S196N196del1Aat-at11AY.40.000002
S196N196KaaTaaA11AY.40.000002
S196N196DAatGat11AY.40.000002
S196N196SaAtaGt11AY.4.20.000022
S196N196SaAtaGt11AY.420.00004
S196N196del1AAT-NN11AY.430.000004
S196N196YAatTat11AY.430.000004
S196N196DAatGat11AY.430.000004
S196N196IaAtaTt11AY.440.000006
S196N196KaaTaaA11AY.460.000104
S196N196NaaTaaC11AY.46.10.001027
S196N196NaaTaaC11AY.46.60.000072
S196N196delAAT---11AY.470.000031
S196N196NaaTaaC11AY.50.000021
S196N196IaAtaTt11AY.50.000021
S196N196TaAtaCt11AY.60.000041
S196N196DAatGat11AY.60.000041
S196N196AAAtGCt11AY.60.000041
S196N196del2aATa--11AY.680.000274
S196N196HAatCat11AY.690.000187
S196N196KaaTaaG11AY.7.10.000113
S196N196NaaTaaC11AY.750.000056
S196N196IaAtaTt11AY.790.001211
S196N196delAAT---11AY.90.000068
S196N196YAatTat11AY.9.20.000037
S196N196SaAtaGt11AY.9.20.000037
S196N196DAatGat11AY.930.000273
S196N196delAAT---11AY.960.002075
S196N196NaaTaaC11AY.98.10.000048
S196N196TaAtaCt11AY.99.10.001553
S196N196delAAT---11B0.000128
S196N196NaaTaaC11B0.000128
S196N196YAatTat11B.10.000009
S196N196SaAtaGt11B.10.000009
S196N196EAaTGaA11B.10.000009
S196N196delAAT---11B.1.1.1700.001247
S196N196NaaTaaC11B.1.1.3060.000438
S196N196delAAT---11B.1.1.3110.000358
S196N196delAAT---11B.1.1.3120.001912
S196N196delAAT---11B.1.1.3150.008475
S196N196NaaTaaC11B.1.1.470.005348
S196N196NaaTaaC11B.1.1.500.000679
S196N196NaaTaaC11B.1.1.5190.00004
S196N196HAatCat11B.1.1.70.000001
S196N196DAatGat11B.1.1.70.000001
S196N196delAAT---11B.1.1.700.000341
S196N196KaaTaaA11B.1.1050.009615
S196N196NaaTaaC11B.1.1390.000733
S196N196delAAT---11B.1.1400.018868
S196N196HAatCat11B.1.1600.000031
S196N196delAAT---11B.1.1600.000031
S196N196TaAtaCt11B.1.160.160.000929
S196N196delAAT---11B.1.160.230.004831
S196N196TaAtaCt11B.1.1770.000013
S196N196IaATaTA11B.1.1770.000013
S196N196delAAT---11B.1.177.100.000878
S196N196delAAT---11B.1.177.180.00116
S196N196IaAtaTt11B.1.177.440.000519
S196N196delAAT---11B.1.177.540.000606
S196N196delAAT---11B.1.177.60.000977
S196N196delAAT---11B.1.177.620.001192
S196N196delAAT---11B.1.177.690.001484
S196N196DAatGat11B.1.20.000009
S196N196delAAT---11B.1.2180.005155
S196N196delAAT---11B.1.2210.000071
S196N196SaAtaGt11B.1.2210.000071
S196N196KaaTaaA11B.1.2210.000071
S196N196RaATaGA11B.1.230.006061
S196N196SaAtaGt11B.1.230.006061
S196N196KaaTaaA11B.1.230.006061
S196N196delAAT---11B.1.2580.000067
S196N196DAatGat11B.1.2580.000067
S196N196delAAT---11B.1.258.30.001675
S196N196NaaTaaC11B.1.2790.000514
S196N196delAAT---11B.1.36.180.00042
S196N196NaaTaaC11B.1.3620.001541
S196N196KaaTaaG11B.1.3690.000285
S196N196NaaTaaC11B.1.3690.000285
S196N196EAaTGaA11B.1.3910.001127
S196N196KaaTaaA11B.1.3910.001127
S196N196DAatGat11B.1.3910.001127
S196N196delAAT---11B.1.4090.000781
S196N196NaaTaaC11B.1.4290.000024
S196N196NaaTaaC11B.1.5040.03125
S196N196delAAT---11B.1.5610.000397
S196N196NaaTaaC11B.1.6090.000479
S196N196del1Aat-at11B.1.617.10.000129
S196N196delAAT---11B.1.617.10.000129
S196N196NaaTaaC11B.1.617.10.000129
S196N196del2aATa--11B.1.617.20.000004
S196N196IaAtaTt11B.1.617.20.000004
S196N196GAAtGGt11B.1.617.20.000004
S196N196TaAtaCt11B.1.617.20.000004
S196N196delAAT---11B.1.6200.000946
S196N196NaaTaaC11B.1.6300.005236
S196N196delAAT---11B.1.6300.005236
S196N196NaaTaaC11B.1.6370.000073
S196N196delAAT---11B.1.6380.052632
S196N196IaAtaTt11C.370.000116
S196N196SaAtaGt11D.20.000075
S196N196delAAT---11P.1.10.000318
S196N196YAatTat11P.1.10.000318
S196N196KaaTaaA11P.1.10.000318
S196N196NaaTaaC11P.1.80.004785
S196N196delAAT---11U.30.003861