CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 190

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	190	R190S		nonsyn	agG	agT	108614	108611	0.999972	22130-22132
S	190	R190S		nonsyn	agG	agC	108614	3	0.0000276207	22130-22132
S	190	R190R		syn	agG	agA	1038	1027	0.989403	22130-22132
S	190	R190R		syn	Agg	Cgg	1038	9	0.00867052	22130-22132
S	190	R190R		syn	AgG	CgA	1038	1	0.000963391	22130-22132
S	190	R190R		syn	AgG	CgT	1038	1	0.000963391	22130-22132
S	190	R190M		nonsyn	aGg	aTg	541	541	1	22130-22132
S	190	R190K		nonsyn	aGg	aAg	519	519	1	22130-22132
S	190	R190del		del	AGG	---	202	202	1	22130-22132
S	190	R190G		nonsyn	Agg	Ggg	134	132	0.985075	22130-22132
S	190	R190G		nonsyn	AgG	GgA	134	1	0.00746269	22130-22132
S	190	R190G		nonsyn	AgG	GgT	134	1	0.00746269	22130-22132
S	190	R190W		nonsyn	Agg	Tgg	80	80	1	22130-22132
S	190	R190del1		del	aGg	a-g	40	37	0.925	22130-22132
S	190	R190del1		del	Agg	-gg	40	3	0.075	22130-22132
S	190	R190I		nonsyn	aGG	aTT	21	19	0.904762	22130-22132
S	190	R190I		nonsyn	aGG	aTA	21	1	0.047619	22130-22132
S	190	R190I		nonsyn	aGG	aTC	21	1	0.047619	22130-22132
S	190	R190N		nonsyn	aGG	aAC	18	14	0.777778	22130-22132
S	190	R190N		nonsyn	aGG	aAT	18	4	0.222222	22130-22132
S	190	R190del2		del	aGG	a--	10	8	0.8	22130-22132
S	190	R190del2		del	AGg	--g	10	2	0.2	22130-22132
S	190	R190X		nonsyn	AGg	TAg	9	8	0.888889	22130-22132
S	190	R190T		nonsyn	aGg	aCg	9	4	0.444444	22130-22132
S	190	R190T		nonsyn	aGG	aCT	9	4	0.444444	22130-22132
S	190	R190X		nonsyn	AgG	TgA	9	1	0.111111	22130-22132
S	190	R190T		nonsyn	aGG	aCA	9	1	0.111111	22130-22132
S	190	R190A		nonsyn	AGG	GCT	3	1	0.333333	22130-22132
S	190	R190P		nonsyn	AGG	CCA	3	1	0.333333	22130-22132
S	190	R190P		nonsyn	AGg	CCg	3	1	0.333333	22130-22132
S	190	R190P		nonsyn	AGG	CCT	3	1	0.333333	22130-22132
S	190	R190A		nonsyn	AGG	GCA	3	1	0.333333	22130-22132
S	190	R190A		nonsyn	AGg	GCg	3	1	0.333333	22130-22132
S	190	R190L		nonsyn	AGg	TTg	2	1	0.5	22130-22132
S	190	R190L		nonsyn	AGG	TTA	2	1	0.5	22130-22132
S	190	R190D		nonsyn	AGG	GAT	1	1	1	22130-22132
S	190	R190F		nonsyn	AGG	TTC	1	1	1	22130-22132
S	190	R190C		nonsyn	AgG	TgC	1	1	1	22130-22132

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	190	R190S	agG	agT	108611	108614	All	0.020773
S	190	R190S	agG	agC	3	108614	All	0.000001
S	190	R190S	agG	agT	59413	59413	P.1	0.935992
S	190	R190S	agG	agT	20417	20417	P.1.14	0.975956
S	190	R190S	agG	agT	5750	5750	P.1.17	0.93012
S	190	R190S	agG	agT	3843	3843	P.1.15	0.89289
S	190	R190S	agG	agT	3358	3358	P.1.10	0.904877
S	190	R190S	agG	agT	3045	3045	P.1.7	0.972222
S	190	R190S	agG	agT	2809	2809	P.1.1	0.892313
S	190	R190S	agG	agT	2410	2410	P.1.16	0.901609
S	190	R190S	agG	agT	1644	1644	P.1.12	0.795741
S	190	R190S	agG	agT	1137	1137	P.1.17.1	0.994751
S	190	R190R	agG	agA	1027	1038	All	0.000196
S	190	R190R	Agg	Cgg	9	1038	All	0.000002
S	190	R190R	AgG	CgT	1	1038	All	0
S	190	R190R	AgG	CgA	1	1038	All	0
S	190	R190S	agG	agT	998	998	P.1.4	0.974609
S	190	R190S	agG	agT	852	852	P.1.13	0.765499
S	190	R190S	agG	agT	829	829	P.1.2	0.958382
S	190	R190M	aGg	aTg	541	541	All	0.000103
S	190	R190K	aGg	aAg	519	519	All	0.000099
S	190	R190S	agG	agT	504	504	P.1.6	0.980545
S	190	R190R	agG	agA	305	306	B.1.1.7	0.000273
S	190	R190R	Agg	Cgg	1	306	B.1.1.7	0.000001
S	190	R190M	aGg	aTg	298	298	B.1.1.198	0.437592
S	190	R190S	agG	agT	234	234	A.21	0.648199
S	190	R190S	agG	agT	227	227	C.1.2	0.965957
S	190	R190del	AGG	---	202	202	All	0.000039
S	190	R190S	agG	agT	200	200	P.1.9	0.961538
S	190	R190S	agG	agT	199	199	P.1.8	0.952153
S	190	R190K	aGg	aAg	173	173	B.1.1.7	0.000155
S	190	R190R	agG	agA	139	139	AY.5	0.00287
S	190	R190G	Agg	Ggg	132	134	All	0.000025
S	190	R190G	AgG	GgA	1	134	All	0
S	190	R190G	AgG	GgT	1	134	All	0
S	190	R190S	agG	agT	95	95	P.1.10.1	0.772358
S	190	R190S	agG	agT	89	89	P.1.11	0.908163
S	190	R190W	Agg	Tgg	80	80	All	0.000015
S	190	R190R	agG	agA	67	68	B.1.617.2	0.000252
S	190	R190R	Agg	Cgg	1	68	B.1.617.2	0.000004
S	190	R190S	agG	agT	55	55	B.1	0.000504
S	190	R190S	agG	agT	48	48	B.1.1.7	0.000043
S	190	R190R	agG	agA	42	42	AY.25	0.000253
S	190	R190K	aGg	aAg	42	42	AY.4	0.000065
S	190	R190del	AGG	---	41	41	B.1.1.7	0.000037
S	190	R190del1	aGg	a-g	37	40	All	0.000007
S	190	R190del1	Agg	-gg	3	40	All	0.000001
S	190	R190S	agG	agT	39	39	B.1.1	0.000707
S	190	R190M	aGg	aTg	38	38	B.1.1.7	0.000034
S	190	R190G	Agg	Ggg	36	36	B.1.1.7	0.000032
S	190	R190M	aGg	aTg	35	35	B.1.596	0.00305
S	190	R190K	aGg	aAg	33	33	AY.44	0.000201
S	190	R190R	agG	agA	32	32	AY.4	0.00005
S	190	R190S	agG	agT	32	32	C.36.3.1	0.086957
S	190	R190del	AGG	---	30	30	P.1	0.000473
S	190	R190R	agG	agA	28	28	C.35	0.021672
S	190	R190S	agG	agT	28	28	P.1.3	0.965517
S	190	R190W	Agg	Tgg	27	27	AY.44	0.000164
S	190	R190K	aGg	aAg	26	26	B.1.177	0.000342
S	190	R190R	agG	agA	22	25	AY.43	0.000097
S	190	R190R	AgG	CgT	1	25	AY.43	0.000004
S	190	R190R	Agg	Cgg	1	25	AY.43	0.000004
S	190	R190R	AgG	CgA	1	25	AY.43	0.000004
S	190	R190M	aGg	aTg	24	24	AY.4	0.000037
S	190	R190S	agG	agT	24	24	B.1.1.528	0.115385
S	190	R190S	agG	agT	24	24	P.1.10.2	1
S	190	R190M	aGg	aTg	23	23	AY.39.1	0.000911
S	190	R190R	agG	agA	23	23	B.1.429	0.000541
S	190	R190I	aGG	aTT	19	21	All	0.000004
S	190	R190I	aGG	aTC	1	21	All	0
S	190	R190I	aGG	aTA	1	21	All	0
S	190	R190R	agG	agA	21	21	AY.33	0.001402
S	190	R190K	aGg	aAg	21	21	B.1.2	0.000185
S	190	R190S	agG	agT	21	21	B.1.576	0.019039
S	190	R190S	agG	agT	21	21	B.1.617.2	0.000079
S	190	R190K	aGg	aAg	21	21	C.39	0.396226
S	190	R190S	agG	agT	20	20	AY.99.2	0.001843
S	190	R190R	agG	agA	19	19	B.1.2	0.000167
S	190	R190R	agG	agA	18	18	A.23.1	0.012676
S	190	R190N	aGG	aAC	14	18	All	0.000003
S	190	R190N	aGG	aAT	4	18	All	0.000001
S	190	R190R	agG	agA	18	18	B.1.1	0.000327
S	190	R190R	agG	agA	18	18	B.1.177	0.000237
S	190	R190S	agG	agT	15	16	AY.4	0.000023
S	190	R190S	agG	agC	1	16	AY.4	0.000002
S	190	R190K	aGg	aAg	15	15	AY.25	0.00009
S	190	R190W	Agg	Tgg	15	15	B.1.1.519	0.000596
S	190	R190S	agG	agT	15	15	B.1.214.2	0.008993
S	190	R190K	aGg	aAg	15	15	B.1.617.2	0.000056
S	190	R190R	agG	agA	13	14	AY.100	0.000598
S	190	R190R	Agg	Cgg	1	14	AY.100	0.000046
S	190	R190K	aGg	aAg	14	14	B.1.1.37	0.0027
S	190	R190R	agG	agA	14	14	B.1.258	0.000932
S	190	R190M	aGg	aTg	14	14	B.1.617.2	0.000053
S	190	R190S	agG	agT	14	14	C.37	0.001625
S	190	R190K	aGg	aAg	13	13	AY.20	0.000505
S	190	R190G	Agg	Ggg	11	13	AY.43	0.000049
S	190	R190G	AgG	GgT	1	13	AY.43	0.000004
S	190	R190G	AgG	GgA	1	13	AY.43	0.000004
S	190	R190M	aGg	aTg	13	13	AY.44	0.000079
S	190	R190R	agG	agA	13	13	B.1	0.000119
S	190	R190S	agG	agT	13	13	P.1.5	1
S	190	R190S	agG	agT	12	12	AY.39	0.000297
S	190	R190del	AGG	---	12	12	AY.43	0.000053
S	190	R190R	agG	agA	12	12	B.1.110.3	0.008621
S	190	R190del	AGG	---	12	12	B.1.177	0.000158
S	190	R190K	aGg	aAg	11	11	AY.103	0.000068
S	190	R190R	agG	agA	11	11	AY.32	0.005857
S	190	R190W	Agg	Tgg	11	11	B.1.1.7	0.00001
S	190	R190del1	aGg	a-g	11	11	B.1.2	0.000097
S	190	R190I	aGG	aTT	11	11	P.1	0.000173
S	190	R190del2	aGG	a--	8	10	All	0.000002
S	190	R190del2	AGg	--g	2	10	All	0
S	190	R190del	AGG	---	10	10	B.1	0.000092
S	190	R190R	agG	agA	10	10	B.1.221	0.00071
S	190	R190S	agG	agT	10	10	B.1.243	0.000696
S	190	R190K	aGg	aAg	10	10	B.1.618	0.040323
S	190	R190X	AGg	TAg	8	9	All	0.000002
S	190	R190T	aGg	aCg	4	9	All	0.000001
S	190	R190T	aGG	aCT	4	9	All	0.000001
S	190	R190X	AgG	TgA	1	9	All	0
S	190	R190T	aGG	aCA	1	9	All	0
S	190	R190N	aGG	aAC	9	9	AY.24	0.003879
S	190	R190R	agG	agA	9	9	AY.34	0.000873
S	190	R190W	Agg	Tgg	9	9	AY.4	0.000014
S	190	R190S	agG	agT	9	9	AY.43	0.00004
S	190	R190S	agG	agT	9	9	AY.44	0.000055
S	190	R190R	agG	agA	9	9	B.1.526	0.000212
S	190	R190del	AGG	---	9	9	P.1.15	0.002091
S	190	R190M	aGg	aTg	8	8	AY.118	0.000501
S	190	R190S	agG	agT	8	8	AY.25	0.000048
S	190	R190R	agG	agA	8	8	AY.3	0.00008
S	190	R190del	AGG	---	8	8	AY.4	0.000012
S	190	R190del	AGG	---	8	8	AY.4.5	0.00086
S	190	R190del1	aGg	a-g	7	8	AY.44	0.000043
S	190	R190del1	Agg	-gg	1	8	AY.44	0.000006
S	190	R190K	aGg	aAg	8	8	AY.69	0.001493
S	190	R190R	Agg	Cgg	4	8	B.1.1.153	0.004381
S	190	R190R	agG	agA	4	8	B.1.1.153	0.004381
S	190	R190I	aGG	aTT	8	8	P.1.14	0.000382
S	190	R190S	agG	agT	7	7	A.2.5	0.003493
S	190	R190R	agG	agA	7	7	AY.103	0.000043
S	190	R190R	agG	agA	7	7	AY.20	0.000272
S	190	R190M	aGg	aTg	7	7	AY.25	0.000042
S	190	R190R	agG	agA	7	7	AY.29	0.00011
S	190	R190G	Agg	Ggg	7	7	AY.4	0.000011
S	190	R190G	Agg	Ggg	7	7	AY.44	0.000043
S	190	R190R	agG	agA	7	7	AY.44	0.000043
S	190	R190K	aGg	aAg	7	7	B.1	0.000064
S	190	R190R	agG	agA	7	7	B.1.1.318	0.002112
S	190	R190M	aGg	aTg	7	7	B.1.177	0.000092
S	190	R190R	agG	agA	7	7	P.2	0.001306
S	190	R190R	agG	agA	5	6	AY.120	0.000186
S	190	R190R	Agg	Cgg	1	6	AY.120	0.000037
S	190	R190R	agG	agA	6	6	AY.121	0.000812
S	190	R190R	agG	agA	6	6	AY.13	0.000966
S	190	R190K	aGg	aAg	6	6	AY.43	0.000027
S	190	R190R	agG	agA	6	6	AY.74	0.000694
S	190	R190S	agG	agT	6	6	B	0.000767
S	190	R190M	aGg	aTg	6	6	B.1	0.000055
S	190	R190R	agG	agA	6	6	B.1.1.519	0.000238
S	190	R190S	agG	agT	6	6	B.1.427	0.000303
S	190	R190G	Agg	Ggg	6	6	B.1.617.2	0.000023
S	190	R190G	Agg	Ggg	6	6	B.1.637	0.000438
S	190	R190del	AGG	---	6	6	C.37	0.000696
S	190	R190del	AGG	---	6	6	P.1.16	0.002245
S	190	R190K	aGg	aAg	5	5	B.1.1	0.000091
S	190	R190S	agG	agT	5	5	B.1.1.161	0.017668
S	190	R190S	agG	agT	5	5	B.1.1.28	0.001556
S	190	R190K	aGg	aAg	5	5	B.1.351	0.000149
S	190	R190S	agG	agT	5	5	B.1.396	0.003529
S	190	R190K	aGg	aAg	5	5	B.1.429	0.000118
S	190	R190del	AGG	---	5	5	B.1.617.2	0.000019
S	190	R190S	agG	agT	4	4	AY.103	0.000025
S	190	R190G	Agg	Ggg	4	4	AY.33	0.000267
S	190	R190S	agG	agT	4	4	AY.34.1	0.00204
S	190	R190G	Agg	Ggg	4	4	AY.39.1	0.000158
S	190	R190M	aGg	aTg	4	4	AY.42	0.000161
S	190	R190G	Agg	Ggg	4	4	AY.46	0.000416
S	190	R190S	agG	agT	4	4	AY.5	0.000083
S	190	R190R	agG	agA	4	4	AY.7.2	0.002237
S	190	R190G	Agg	Ggg	4	4	AY.9.1	0.000335
S	190	R190G	Agg	Ggg	4	4	AY.9.2	0.000147
S	190	R190S	agG	agT	4	4	AY.9.2	0.000147
S	190	R190M	aGg	aTg	4	4	B.1.1.519	0.000159
S	190	R190R	agG	agA	4	4	B.1.160	0.000125
S	190	R190G	Agg	Ggg	4	4	B.1.2	0.000035
S	190	R190S	agG	agT	4	4	B.1.351	0.000119
S	190	R190K	aGg	aAg	4	4	B.1.427	0.000202
S	190	R190K	aGg	aAg	4	4	B.1.596	0.000349
S	190	R190M	aGg	aTg	4	4	C.37	0.000464
S	190	R190S	agG	agT	4	4	N.5	0.007067
S	190	R190T	aGG	aCT	4	4	P.1	0.000063
S	190	R190N	aGG	aAT	4	4	P.1	0.000063
S	190	R190M	aGg	aTg	4	4	P.2	0.000747
S	190	R190X	AGg	TAg	2	3		0.111111
S	190	R190X	AgG	TgA	1	3		0.055556
S	190	R190A	AGG	GCT	1	3	All	0
S	190	R190P	AGg	CCg	1	3	All	0
S	190	R190P	AGG	CCT	1	3	All	0
S	190	R190A	AGG	GCA	1	3	All	0
S	190	R190A	AGg	GCg	1	3	All	0
S	190	R190P	AGG	CCA	1	3	All	0
S	190	R190M	aGg	aTg	3	3	AY.119	0.000106
S	190	R190K	aGg	aAg	3	3	AY.119	0.000106
S	190	R190S	agG	agT	3	3	AY.121	0.000406
S	190	R190G	Agg	Ggg	3	3	AY.20	0.000117
S	190	R190del	AGG	---	3	3	AY.25	0.000018
S	190	R190G	Agg	Ggg	3	3	AY.25	0.000018
S	190	R190K	aGg	aAg	3	3	AY.39	0.000074
S	190	R190P	AGg	CCg	1	3	AY.43	0.000004
S	190	R190P	AGG	CCA	1	3	AY.43	0.000004
S	190	R190P	AGG	CCT	1	3	AY.43	0.000004
S	190	R190A	AGG	GCT	1	3	AY.43	0.000004
S	190	R190A	AGg	GCg	1	3	AY.43	0.000004
S	190	R190A	AGG	GCA	1	3	AY.43	0.000004
S	190	R190K	aGg	aAg	3	3	AY.65	0.001599
S	190	R190S	agG	agT	3	3	AY.68	0.000821
S	190	R190R	agG	agA	3	3	AY.9	0.000203
S	190	R190R	agG	agA	3	3	AY.93	0.000819
S	190	R190R	agG	agA	3	3	AZ.3	0.004559
S	190	R190M	aGg	aTg	3	3	B.1.1	0.000054
S	190	R190K	aGg	aAg	3	3	B.1.1.306	0.001315
S	190	R190S	agG	agT	3	3	B.1.1.317	0.001235
S	190	R190K	aGg	aAg	3	3	B.1.1.420	0.003018
S	190	R190del1	aGg	a-g	3	3	B.1.1.7	0.000003
S	190	R190del2	aGG	a--	2	3	B.1.1.7	0.000002
S	190	R190del2	AGg	--g	1	3	B.1.1.7	0.000001
S	190	R190K	aGg	aAg	3	3	B.1.160	0.000094
S	190	R190R	agG	agA	3	3	B.1.177.21	0.000229
S	190	R190S	agG	agT	3	3	B.1.2	0.000026
S	190	R190M	aGg	aTg	3	3	B.1.258	0.0002
S	190	R190K	aGg	aAg	3	3	B.1.320	0.003736
S	190	R190R	agG	agA	3	3	B.1.351	0.000089
S	190	R190S	agG	agT	3	3	B.1.596	0.000261
S	190	R190W	Agg	Tgg	3	3	B.1.617.2	0.000011
S	190	R190S	agG	agT	3	3	B.1.636	0.020134
S	190	R190K	aGg	aAg	3	3	C.37	0.000348
S	190	R190G	Agg	Ggg	3	3	C.37	0.000348
S	190	R190R	agG	agA	3	3	C.37	0.000348
S	190	R190M	aGg	aTg	3	3	D.2	0.000225
S	190	R190S	agG	agT	3	3	Q.1	0.000379
S	190	R190L	AGg	TTg	1	2		0.055556
S	190	R190I	aGG	aTA	1	2		0.055556
S	190	R190I	aGG	aTC	1	2		0.055556
S	190	R190L	AGG	TTA	1	2		0.055556
S	190	R190S	agG	agT	2	2	A	0.000774
S	190	R190L	AGG	TTA	1	2	All	0
S	190	R190L	AGg	TTg	1	2	All	0
S	190	R190R	agG	agA	2	2	AU.3	0.004219
S	190	R190R	agG	agA	2	2	AY.102	0.000053
S	190	R190G	Agg	Ggg	2	2	AY.103	0.000012
S	190	R190M	aGg	aTg	2	2	AY.117	0.000169
S	190	R190del	AGG	---	2	2	AY.120	0.000074
S	190	R190R	agG	agA	2	2	AY.14	0.000176
S	190	R190N	aGG	aAC	2	2	AY.25	0.000012
S	190	R190G	Agg	Ggg	2	2	AY.26	0.000057
S	190	R190R	agG	agA	2	2	AY.26	0.000057
S	190	R190K	aGg	aAg	2	2	AY.26	0.000057
S	190	R190del	AGG	---	2	2	AY.29	0.000032
S	190	R190G	Agg	Ggg	2	2	AY.3	0.00002
S	190	R190M	aGg	aTg	2	2	AY.3	0.00002
S	190	R190G	Agg	Ggg	2	2	AY.39	0.000049
S	190	R190del1	aGg	a-g	1	2	AY.4	0.000002
S	190	R190del1	Agg	-gg	1	2	AY.4	0.000002
S	190	R190del1	aGg	a-g	1	2	AY.43	0.000004
S	190	R190del1	Agg	-gg	1	2	AY.43	0.000004
S	190	R190del	AGG	---	2	2	AY.44	0.000012
S	190	R190S	agG	agT	2	2	AY.45	0.000243
S	190	R190del	AGG	---	2	2	AY.46.2	0.001271
S	190	R190M	aGg	aTg	2	2	AY.47	0.000062
S	190	R190M	aGg	aTg	2	2	AY.55	0.001835
S	190	R190M	aGg	aTg	2	2	AY.6	0.000082
S	190	R190R	agG	agA	2	2	AY.69	0.000373
S	190	R190S	agG	agT	2	2	AY.75	0.000112
S	190	R190del	AGG	---	2	2	AY.9	0.000135
S	190	R190G	Agg	Ggg	2	2	B.1	0.000018
S	190	R190G	Agg	Ggg	2	2	B.1.1	0.000036
S	190	R190del	AGG	---	2	2	B.1.1	0.000036
S	190	R190S	agG	agT	2	2	B.1.1.1	0.000653
S	190	R190K	aGg	aAg	2	2	B.1.1.214	0.000111
S	190	R190S	agG	agT	2	2	B.1.1.368	0.006173
S	190	R190K	aGg	aAg	2	2	B.1.1.519	0.000079
S	190	R190W	Agg	Tgg	2	2	B.1.160	0.000062
S	190	R190del	AGG	---	2	2	B.1.177.16	0.001329
S	190	R190R	agG	agA	2	2	B.1.177.19	0.002861
S	190	R190R	agG	agA	2	2	B.1.177.60	0.000437
S	190	R190S	agG	agT	2	2	B.1.177.86	0.000367
S	190	R190K	aGg	aAg	2	2	B.1.177.9	0.002663
S	190	R190M	aGg	aTg	2	2	B.1.2	0.000018
S	190	R190del	AGG	---	2	2	B.1.2	0.000018
S	190	R190M	aGg	aTg	2	2	B.1.234	0.000264
S	190	R190M	aGg	aTg	2	2	B.1.243	0.000139
S	190	R190K	aGg	aAg	2	2	B.1.258	0.000133
S	190	R190K	aGg	aAg	2	2	B.1.36	0.000292
S	190	R190R	agG	agA	2	2	B.1.36.36	0.001204
S	190	R190K	aGg	aAg	2	2	B.1.400	0.000858
S	190	R190S	agG	agT	2	2	B.1.429	0.000047
S	190	R190G	Agg	Ggg	2	2	B.1.429	0.000047
S	190	R190R	agG	agA	2	2	B.1.525	0.000226
S	190	R190S	agG	agT	2	2	B.1.526	0.000047
S	190	R190K	aGg	aAg	2	2	B.1.526	0.000047
S	190	R190S	agG	agT	2	2	B.1.575	0.000607
S	190	R190R	agG	agA	2	2	B.1.596	0.000174
S	190	R190R	agG	agA	2	2	B.1.602	0.013072
S	190	R190del1	aGg	a-g	2	2	B.1.617.2	0.000008
S	190	R190S	agG	agT	2	2	B.1.621	0.000177
S	190	R190del	AGG	---	2	2	B.1.621	0.000177
S	190	R190R	agG	agA	2	2	B.1.621	0.000177
S	190	R190R	agG	agA	2	2	B.1.628	0.000705
S	190	R190S	agG	agT	2	2	B.1.637	0.000146
S	190	R190S	agG	agT	2	2	C.1	0.004785
S	190	R190R	agG	agA	2	2	C.36.3	0.001134
S	190	R190R	agG	agA	2	2	N.5	0.003534
S	190	R190K	aGg	aAg	2	2	Q.8	0.00033
S	190	R190F	AGG	TTC	1	1		0.055556
S	190	R190C	AgG	TgC	1	1		0.055556
S	190	R190W	Agg	Tgg	1	1		0.055556
S	190	R190R	agG	agA	1	1		0.055556
S	190	R190M	aGg	aTg	1	1		0.055556
S	190	R190S	agG	agC	1	1		0.055556
S	190	R190R	agG	agA	1	1	A	0.000387
S	190	R190K	aGg	aAg	1	1	A.1	0.000282
S	190	R190S	agG	agT	1	1	A.18	0.05
S	190	R190S	agG	agT	1	1	A.2	0.000662
S	190	R190M	aGg	aTg	1	1	A.2.4	0.003367
S	190	R190del	AGG	---	1	1	A.2.5	0.000499
S	190	R190S	agG	agT	1	1	A.2.5.1	0.004808
S	190	R190S	agG	agT	1	1	A.3	0.002096
S	190	R190C	AgG	TgC	1	1	All	0
S	190	R190F	AGG	TTC	1	1	All	0
S	190	R190D	AGG	GAT	1	1	All	0
S	190	R190del	AGG	---	1	1	AY.100	0.000046
S	190	R190S	agG	agT	1	1	AY.100	0.000046
S	190	R190K	aGg	aAg	1	1	AY.102	0.000027
S	190	R190S	agG	agT	1	1	AY.102	0.000027
S	190	R190M	aGg	aTg	1	1	AY.102	0.000027
S	190	R190del1	aGg	a-g	1	1	AY.103	0.000006
S	190	R190X	AGg	TAg	1	1	AY.103	0.000006
S	190	R190R	agG	agA	1	1	AY.105	0.000643
S	190	R190S	agG	agT	1	1	AY.111	0.000183
S	190	R190K	aGg	aAg	1	1	AY.113	0.000142
S	190	R190R	agG	agA	1	1	AY.114	0.000231
S	190	R190S	agG	agT	1	1	AY.116	0.000287
S	190	R190R	agG	agA	1	1	AY.116.1	0.000311
S	190	R190S	agG	agT	1	1	AY.116.1	0.000311
S	190	R190G	Agg	Ggg	1	1	AY.117	0.000085
S	190	R190R	agG	agA	1	1	AY.117	0.000085
S	190	R190S	agG	agT	1	1	AY.118	0.000063
S	190	R190N	aGG	aAC	1	1	AY.119	0.000035
S	190	R190W	Agg	Tgg	1	1	AY.119	0.000035
S	190	R190G	Agg	Ggg	1	1	AY.120	0.000037
S	190	R190N	aGG	aAC	1	1	AY.120	0.000037
S	190	R190R	agG	agA	1	1	AY.120.2	0.001285
S	190	R190del1	aGg	a-g	1	1	AY.121	0.000135
S	190	R190K	aGg	aAg	1	1	AY.14	0.000088
S	190	R190M	aGg	aTg	1	1	AY.16.1	0.00047
S	190	R190M	aGg	aTg	1	1	AY.20	0.000039
S	190	R190G	Agg	Ggg	1	1	AY.23	0.00007
S	190	R190S	agG	agT	1	1	AY.23	0.00007
S	190	R190del1	aGg	a-g	1	1	AY.23	0.00007
S	190	R190M	aGg	aTg	1	1	AY.23	0.00007
S	190	R190K	aGg	aAg	1	1	AY.23	0.00007
S	190	R190del	AGG	---	1	1	AY.24	0.000431
S	190	R190del	AGG	---	1	1	AY.26	0.000028
S	190	R190S	agG	agT	1	1	AY.26	0.000028
S	190	R190R	agG	agA	1	1	AY.27	0.000065
S	190	R190M	aGg	aTg	1	1	AY.29	0.000016
S	190	R190del	AGG	---	1	1	AY.3	0.00001
S	190	R190S	agG	agT	1	1	AY.3	0.00001
S	190	R190W	Agg	Tgg	1	1	AY.3	0.00001
S	190	R190K	aGg	aAg	1	1	AY.3	0.00001
S	190	R190M	aGg	aTg	1	1	AY.30	0.000396
S	190	R190S	agG	agT	1	1	AY.32	0.000532
S	190	R190M	aGg	aTg	1	1	AY.33	0.000067
S	190	R190K	aGg	aAg	1	1	AY.33	0.000067
S	190	R190M	aGg	aTg	1	1	AY.34	0.000097
S	190	R190K	aGg	aAg	1	1	AY.34	0.000097
S	190	R190M	aGg	aTg	1	1	AY.34.1	0.00051
S	190	R190W	Agg	Tgg	1	1	AY.34.1	0.00051
S	190	R190R	agG	agA	1	1	AY.35	0.000233
S	190	R190G	Agg	Ggg	1	1	AY.36	0.000148
S	190	R190S	agG	agT	1	1	AY.38	0.000499
S	190	R190R	agG	agA	1	1	AY.39	0.000025
S	190	R190S	agG	agT	1	1	AY.39.1	0.00004
S	190	R190del2	AGg	--g	1	1	AY.4	0.000002
S	190	R190R	agG	agA	1	1	AY.4.1	0.000737
S	190	R190R	agG	agA	1	1	AY.4.2	0.000022
S	190	R190S	agG	agT	1	1	AY.4.2	0.000022
S	190	R190M	aGg	aTg	1	1	AY.4.2	0.000022
S	190	R190del1	aGg	a-g	1	1	AY.4.2.1	0.000149
S	190	R190R	agG	agA	1	1	AY.40	0.000964
S	190	R190M	aGg	aTg	1	1	AY.41	0.000294
S	190	R190T	aGG	aCA	1	1	AY.42	0.00004
S	190	R190M	aGg	aTg	1	1	AY.43	0.000004
S	190	R190del2	aGG	a--	1	1	AY.44	0.000006
S	190	R190K	aGg	aAg	1	1	AY.46	0.000104
S	190	R190R	agG	agA	1	1	AY.46	0.000104
S	190	R190S	agG	agT	1	1	AY.46.3	0.000934
S	190	R190R	agG	agA	1	1	AY.46.6	0.000072
S	190	R190del1	aGg	a-g	1	1	AY.46.6	0.000072
S	190	R190del	AGG	---	1	1	AY.47	0.000031
S	190	R190K	aGg	aAg	1	1	AY.47	0.000031
S	190	R190del1	aGg	a-g	1	1	AY.5	0.000021
S	190	R190K	aGg	aAg	1	1	AY.5	0.000021
S	190	R190R	agG	agA	1	1	AY.5.3	0.000337
S	190	R190R	agG	agA	1	1	AY.59	0.00053
S	190	R190R	agG	agA	1	1	AY.61	0.000105
S	190	R190K	aGg	aAg	1	1	AY.63	0.000387
S	190	R190del2	aGG	a--	1	1	AY.67	0.000464
S	190	R190del1	aGg	a-g	1	1	AY.68	0.000274
S	190	R190R	agG	agA	1	1	AY.68	0.000274
S	190	R190S	agG	agT	1	1	AY.69	0.000187
S	190	R190K	aGg	aAg	1	1	AY.7.2	0.000559
S	190	R190R	agG	agA	1	1	AY.71	0.000475
S	190	R190M	aGg	aTg	1	1	AY.74	0.000116
S	190	R190R	agG	agA	1	1	AY.75	0.000056
S	190	R190T	aGg	aCg	1	1	AY.75	0.000056
S	190	R190del1	aGg	a-g	1	1	AY.75.1	0.00018
S	190	R190W	Agg	Tgg	1	1	AY.75.1	0.00018
S	190	R190R	agG	agA	1	1	AY.79	0.001211
S	190	R190G	Agg	Ggg	1	1	AY.80	0.001129
S	190	R190K	aGg	aAg	1	1	AY.88	0.000884
S	190	R190G	Agg	Ggg	1	1	AY.9	0.000068
S	190	R190K	aGg	aAg	1	1	AY.9.2	0.000037
S	190	R190del1	aGg	a-g	1	1	AY.9.2	0.000037
S	190	R190S	agG	agT	1	1	AY.92	0.000287
S	190	R190M	aGg	aTg	1	1	AY.94	0.000443
S	190	R190del	AGG	---	1	1	AY.96	0.002075
S	190	R190S	agG	agT	1	1	AY.98.1	0.000048
S	190	R190T	aGg	aCg	1	1	AY.98.1	0.000048
S	190	R190M	aGg	aTg	1	1	AY.98.1	0.000048
S	190	R190K	aGg	aAg	1	1	AY.98.1	0.000048
S	190	R190del	AGG	---	1	1	B	0.000128
S	190	R190W	Agg	Tgg	1	1	B	0.000128
S	190	R190del1	aGg	a-g	1	1	B	0.000128
S	190	R190T	aGg	aCg	1	1	B.1	0.000009
S	190	R190del2	aGG	a--	1	1	B.1	0.000009
S	190	R190W	Agg	Tgg	1	1	B.1.1	0.000018
S	190	R190R	agG	agA	1	1	B.1.1.1	0.000327
S	190	R190K	aGg	aAg	1	1	B.1.1.1	0.000327
S	190	R190K	aGg	aAg	1	1	B.1.1.157	0.000913
S	190	R190del	AGG	---	1	1	B.1.1.170	0.001247
S	190	R190K	aGg	aAg	1	1	B.1.1.176	0.000439
S	190	R190S	agG	agT	1	1	B.1.1.220	0.001859
S	190	R190K	aGg	aAg	1	1	B.1.1.226	0.005814
S	190	R190R	agG	agA	1	1	B.1.1.28	0.000311
S	190	R190M	aGg	aTg	1	1	B.1.1.28	0.000311
S	190	R190R	agG	agA	1	1	B.1.1.294	0.001266
S	190	R190K	aGg	aAg	1	1	B.1.1.298	0.000862
S	190	R190R	agG	agA	1	1	B.1.1.304	0.002809
S	190	R190del	AGG	---	1	1	B.1.1.311	0.000358
S	190	R190del	AGG	---	1	1	B.1.1.315	0.008475
S	190	R190K	aGg	aAg	1	1	B.1.1.348	0.000796
S	190	R190R	agG	agA	1	1	B.1.1.353	0.020833
S	190	R190K	aGg	aAg	1	1	B.1.1.369	0.000446
S	190	R190R	agG	agA	1	1	B.1.1.409	0.002833
S	190	R190S	agG	agT	1	1	B.1.1.519	0.00004
S	190	R190X	AGg	TAg	1	1	B.1.1.7	0.000001
S	190	R190K	aGg	aAg	1	1	B.1.1.70	0.000341
S	190	R190del	AGG	---	1	1	B.1.1.70	0.000341
S	190	R190K	aGg	aAg	1	1	B.1.108	0.005814
S	190	R190del	AGG	---	1	1	B.1.140	0.018868
S	190	R190G	Agg	Ggg	1	1	B.1.147	0.000756
S	190	R190del	AGG	---	1	1	B.1.160	0.000031
S	190	R190X	AGg	TAg	1	1	B.1.160	0.000031
S	190	R190del	AGG	---	1	1	B.1.160.23	0.004831
S	190	R190S	agG	agT	1	1	B.1.177	0.000013
S	190	R190T	aGg	aCg	1	1	B.1.177	0.000013
S	190	R190del	AGG	---	1	1	B.1.177.10	0.000878
S	190	R190del	AGG	---	1	1	B.1.177.18	0.00116
S	190	R190del	AGG	---	1	1	B.1.177.21	0.000076
S	190	R190del2	aGG	a--	1	1	B.1.177.54	0.000606
S	190	R190R	agG	agA	1	1	B.1.177.57	0.000281
S	190	R190del2	aGG	a--	1	1	B.1.177.57	0.000281
S	190	R190R	agG	agA	1	1	B.1.177.58	0.001332
S	190	R190del	AGG	---	1	1	B.1.177.6	0.000977
S	190	R190K	aGg	aAg	1	1	B.1.177.60	0.000218
S	190	R190del	AGG	---	1	1	B.1.177.62	0.001192
S	190	R190del	AGG	---	1	1	B.1.177.69	0.001484
S	190	R190S	agG	agT	1	1	B.1.177.73	0.000566
S	190	R190K	aGg	aAg	1	1	B.1.177.77	0.000726
S	190	R190S	agG	agT	1	1	B.1.177.83	0.001481
S	190	R190W	Agg	Tgg	1	1	B.1.2	0.000009
S	190	R190S	agG	agT	1	1	B.1.214	0.003663
S	190	R190K	aGg	aAg	1	1	B.1.215	0.009615
S	190	R190del	AGG	---	1	1	B.1.218	0.005155
S	190	R190W	Agg	Tgg	1	1	B.1.221	0.000071
S	190	R190R	agG	agA	1	1	B.1.234	0.000132
S	190	R190del2	aGG	a--	1	1	B.1.258	0.000067
S	190	R190X	AGg	TAg	1	1	B.1.258	0.000067
S	190	R190del	AGG	---	1	1	B.1.258	0.000067
S	190	R190W	Agg	Tgg	1	1	B.1.258	0.000067
S	190	R190G	Agg	Ggg	1	1	B.1.258.11	0.000396
S	190	R190R	agG	agA	1	1	B.1.258.21	0.007752
S	190	R190del	AGG	---	1	1	B.1.258.3	0.001675
S	190	R190K	aGg	aAg	1	1	B.1.298	0.002114
S	190	R190S	agG	agT	1	1	B.1.311	0.000275
S	190	R190K	aGg	aAg	1	1	B.1.319	0.003049
S	190	R190S	agG	agT	1	1	B.1.349	0.000715
S	190	R190G	Agg	Ggg	1	1	B.1.351	0.00003
S	190	R190M	aGg	aTg	1	1	B.1.351	0.00003
S	190	R190K	aGg	aAg	1	1	B.1.356	0.001727
S	190	R190R	agG	agA	1	1	B.1.36	0.000146
S	190	R190S	agG	agT	1	1	B.1.36.16	0.001425
S	190	R190del	AGG	---	1	1	B.1.36.18	0.00042
S	190	R190S	agG	agT	1	1	B.1.36.37	0.002778
S	190	R190R	agG	agA	1	1	B.1.36.8	0.001
S	190	R190S	agG	agC	1	1	B.1.36.8	0.001
S	190	R190del1	aGg	a-g	1	1	B.1.377	0.004566
S	190	R190X	AGg	TAg	1	1	B.1.391	0.001127
S	190	R190W	Agg	Tgg	1	1	B.1.391	0.001127
S	190	R190K	aGg	aAg	1	1	B.1.391	0.001127
S	190	R190S	agG	agT	1	1	B.1.399	0.001934
S	190	R190del	AGG	---	1	1	B.1.409	0.000781
S	190	R190K	aGg	aAg	1	1	B.1.416.1	0.001563
S	190	R190R	agG	agA	1	1	B.1.422	0.000812
S	190	R190G	Agg	Ggg	1	1	B.1.427	0.00005
S	190	R190R	agG	agA	1	1	B.1.427	0.00005
S	190	R190del1	aGg	a-g	1	1	B.1.429	0.000024
S	190	R190R	agG	agA	1	1	B.1.438.1	0.000107
S	190	R190M	aGg	aTg	1	1	B.1.466.2	0.000391
S	190	R190W	Agg	Tgg	1	1	B.1.510	0.026316
S	190	R190M	aGg	aTg	1	1	B.1.526	0.000024
S	190	R190S	agG	agT	1	1	B.1.533	0.009615
S	190	R190M	aGg	aTg	1	1	B.1.540	0.009709
S	190	R190M	aGg	aTg	1	1	B.1.546	0.003704
S	190	R190del	AGG	---	1	1	B.1.561	0.000397
S	190	R190K	aGg	aAg	1	1	B.1.567	0.003333
S	190	R190G	Agg	Ggg	1	1	B.1.589	0.007576
S	190	R190K	aGg	aAg	1	1	B.1.609	0.000479
S	190	R190del	AGG	---	1	1	B.1.617.1	0.000129
S	190	R190X	AGg	TAg	1	1	B.1.617.2	0.000004
S	190	R190N	aGG	aAC	1	1	B.1.617.2	0.000004
S	190	R190W	Agg	Tgg	1	1	B.1.619	0.000871
S	190	R190R	agG	agA	1	1	B.1.619.1	0.000641
S	190	R190del	AGG	---	1	1	B.1.620	0.000946
S	190	R190del	AGG	---	1	1	B.1.621.1	0.000506
S	190	R190S	agG	agT	1	1	B.1.623	0.000536
S	190	R190R	agG	agA	1	1	B.1.630	0.005236
S	190	R190S	agG	agT	1	1	B.1.635	0.017544
S	190	R190del	AGG	---	1	1	B.1.638	0.052632
S	190	R190del	AGG	---	1	1	B.34	0.013699
S	190	R190K	aGg	aAg	1	1	C.23	0.005814
S	190	R190S	agG	agT	1	1	C.35	0.000774
S	190	R190R	agG	agA	1	1	D.2	0.000075
S	190	R190K	aGg	aAg	1	1	D.2	0.000075
S	190	R190D	AGG	GAT	1	1	P.1	0.000016
S	190	R190R	agG	agA	1	1	P.1	0.000016
S	190	R190K	aGg	aAg	1	1	P.1.1	0.000318
S	190	R190del	AGG	---	1	1	P.1.1	0.000318
S	190	R190K	aGg	aAg	1	1	P.1.15	0.000232
S	190	R190S	agG	agT	1	1	P.4	0.003802
S	190	R190S	agG	agT	1	1	P.7	0.004367
S	190	R190M	aGg	aTg	1	1	Q.1	0.000126
S	190	R190G	Agg	Ggg	1	1	Q.1	0.000126
S	190	R190R	agG	agA	1	1	Q.3	0.000145
S	190	R190R	agG	agA	1	1	Q.8	0.000165
S	190	R190R	agG	agA	1	1	R.1	0.00009
S	190	R190del	AGG	---	1	1	U.3	0.003861
S	190	R190R	agG	agA	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.