CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 190 | R190S | nonsyn | agG | agT | 108614 | 108611 | 0.999972 | 22130-22132 | |
S | 190 | R190S | nonsyn | agG | agC | 108614 | 3 | 0.0000276207 | 22130-22132 | |
S | 190 | R190R | syn | agG | agA | 1038 | 1027 | 0.989403 | 22130-22132 | |
S | 190 | R190R | syn | Agg | Cgg | 1038 | 9 | 0.00867052 | 22130-22132 | |
S | 190 | R190R | syn | AgG | CgA | 1038 | 1 | 0.000963391 | 22130-22132 | |
S | 190 | R190R | syn | AgG | CgT | 1038 | 1 | 0.000963391 | 22130-22132 | |
S | 190 | R190M | nonsyn | aGg | aTg | 541 | 541 | 1 | 22130-22132 | |
S | 190 | R190K | nonsyn | aGg | aAg | 519 | 519 | 1 | 22130-22132 | |
S | 190 | R190del | del | AGG | --- | 202 | 202 | 1 | 22130-22132 | |
S | 190 | R190G | nonsyn | Agg | Ggg | 134 | 132 | 0.985075 | 22130-22132 | |
S | 190 | R190G | nonsyn | AgG | GgA | 134 | 1 | 0.00746269 | 22130-22132 | |
S | 190 | R190G | nonsyn | AgG | GgT | 134 | 1 | 0.00746269 | 22130-22132 | |
S | 190 | R190W | nonsyn | Agg | Tgg | 80 | 80 | 1 | 22130-22132 | |
S | 190 | R190del1 | del | aGg | a-g | 40 | 37 | 0.925 | 22130-22132 | |
S | 190 | R190del1 | del | Agg | -gg | 40 | 3 | 0.075 | 22130-22132 | |
S | 190 | R190I | nonsyn | aGG | aTT | 21 | 19 | 0.904762 | 22130-22132 | |
S | 190 | R190I | nonsyn | aGG | aTA | 21 | 1 | 0.047619 | 22130-22132 | |
S | 190 | R190I | nonsyn | aGG | aTC | 21 | 1 | 0.047619 | 22130-22132 | |
S | 190 | R190N | nonsyn | aGG | aAC | 18 | 14 | 0.777778 | 22130-22132 | |
S | 190 | R190N | nonsyn | aGG | aAT | 18 | 4 | 0.222222 | 22130-22132 | |
S | 190 | R190del2 | del | aGG | a-- | 10 | 8 | 0.8 | 22130-22132 | |
S | 190 | R190del2 | del | AGg | --g | 10 | 2 | 0.2 | 22130-22132 | |
S | 190 | R190X | nonsyn | AGg | TAg | 9 | 8 | 0.888889 | 22130-22132 | |
S | 190 | R190T | nonsyn | aGg | aCg | 9 | 4 | 0.444444 | 22130-22132 | |
S | 190 | R190T | nonsyn | aGG | aCT | 9 | 4 | 0.444444 | 22130-22132 | |
S | 190 | R190X | nonsyn | AgG | TgA | 9 | 1 | 0.111111 | 22130-22132 | |
S | 190 | R190T | nonsyn | aGG | aCA | 9 | 1 | 0.111111 | 22130-22132 | |
S | 190 | R190A | nonsyn | AGG | GCT | 3 | 1 | 0.333333 | 22130-22132 | |
S | 190 | R190P | nonsyn | AGG | CCA | 3 | 1 | 0.333333 | 22130-22132 | |
S | 190 | R190P | nonsyn | AGg | CCg | 3 | 1 | 0.333333 | 22130-22132 | |
S | 190 | R190P | nonsyn | AGG | CCT | 3 | 1 | 0.333333 | 22130-22132 | |
S | 190 | R190A | nonsyn | AGG | GCA | 3 | 1 | 0.333333 | 22130-22132 | |
S | 190 | R190A | nonsyn | AGg | GCg | 3 | 1 | 0.333333 | 22130-22132 | |
S | 190 | R190L | nonsyn | AGg | TTg | 2 | 1 | 0.5 | 22130-22132 | |
S | 190 | R190L | nonsyn | AGG | TTA | 2 | 1 | 0.5 | 22130-22132 | |
S | 190 | R190D | nonsyn | AGG | GAT | 1 | 1 | 1 | 22130-22132 | |
S | 190 | R190F | nonsyn | AGG | TTC | 1 | 1 | 1 | 22130-22132 | |
S | 190 | R190C | nonsyn | AgG | TgC | 1 | 1 | 1 | 22130-22132 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 190 | R190S | agG | agT | 108611 | 108614 | All | 0.020773 |
S | 190 | R190S | agG | agC | 3 | 108614 | All | 0.000001 |
S | 190 | R190S | agG | agT | 59413 | 59413 | P.1 | 0.935992 |
S | 190 | R190S | agG | agT | 20417 | 20417 | P.1.14 | 0.975956 |
S | 190 | R190S | agG | agT | 5750 | 5750 | P.1.17 | 0.93012 |
S | 190 | R190S | agG | agT | 3843 | 3843 | P.1.15 | 0.89289 |
S | 190 | R190S | agG | agT | 3358 | 3358 | P.1.10 | 0.904877 |
S | 190 | R190S | agG | agT | 3045 | 3045 | P.1.7 | 0.972222 |
S | 190 | R190S | agG | agT | 2809 | 2809 | P.1.1 | 0.892313 |
S | 190 | R190S | agG | agT | 2410 | 2410 | P.1.16 | 0.901609 |
S | 190 | R190S | agG | agT | 1644 | 1644 | P.1.12 | 0.795741 |
S | 190 | R190S | agG | agT | 1137 | 1137 | P.1.17.1 | 0.994751 |
S | 190 | R190R | agG | agA | 1027 | 1038 | All | 0.000196 |
S | 190 | R190R | Agg | Cgg | 9 | 1038 | All | 0.000002 |
S | 190 | R190R | AgG | CgT | 1 | 1038 | All | 0 |
S | 190 | R190R | AgG | CgA | 1 | 1038 | All | 0 |
S | 190 | R190S | agG | agT | 998 | 998 | P.1.4 | 0.974609 |
S | 190 | R190S | agG | agT | 852 | 852 | P.1.13 | 0.765499 |
S | 190 | R190S | agG | agT | 829 | 829 | P.1.2 | 0.958382 |
S | 190 | R190M | aGg | aTg | 541 | 541 | All | 0.000103 |
S | 190 | R190K | aGg | aAg | 519 | 519 | All | 0.000099 |
S | 190 | R190S | agG | agT | 504 | 504 | P.1.6 | 0.980545 |
S | 190 | R190R | agG | agA | 305 | 306 | B.1.1.7 | 0.000273 |
S | 190 | R190R | Agg | Cgg | 1 | 306 | B.1.1.7 | 0.000001 |
S | 190 | R190M | aGg | aTg | 298 | 298 | B.1.1.198 | 0.437592 |
S | 190 | R190S | agG | agT | 234 | 234 | A.21 | 0.648199 |
S | 190 | R190S | agG | agT | 227 | 227 | C.1.2 | 0.965957 |
S | 190 | R190del | AGG | --- | 202 | 202 | All | 0.000039 |
S | 190 | R190S | agG | agT | 200 | 200 | P.1.9 | 0.961538 |
S | 190 | R190S | agG | agT | 199 | 199 | P.1.8 | 0.952153 |
S | 190 | R190K | aGg | aAg | 173 | 173 | B.1.1.7 | 0.000155 |
S | 190 | R190R | agG | agA | 139 | 139 | AY.5 | 0.00287 |
S | 190 | R190G | Agg | Ggg | 132 | 134 | All | 0.000025 |
S | 190 | R190G | AgG | GgA | 1 | 134 | All | 0 |
S | 190 | R190G | AgG | GgT | 1 | 134 | All | 0 |
S | 190 | R190S | agG | agT | 95 | 95 | P.1.10.1 | 0.772358 |
S | 190 | R190S | agG | agT | 89 | 89 | P.1.11 | 0.908163 |
S | 190 | R190W | Agg | Tgg | 80 | 80 | All | 0.000015 |
S | 190 | R190R | agG | agA | 67 | 68 | B.1.617.2 | 0.000252 |
S | 190 | R190R | Agg | Cgg | 1 | 68 | B.1.617.2 | 0.000004 |
S | 190 | R190S | agG | agT | 55 | 55 | B.1 | 0.000504 |
S | 190 | R190S | agG | agT | 48 | 48 | B.1.1.7 | 0.000043 |
S | 190 | R190R | agG | agA | 42 | 42 | AY.25 | 0.000253 |
S | 190 | R190K | aGg | aAg | 42 | 42 | AY.4 | 0.000065 |
S | 190 | R190del | AGG | --- | 41 | 41 | B.1.1.7 | 0.000037 |
S | 190 | R190del1 | aGg | a-g | 37 | 40 | All | 0.000007 |
S | 190 | R190del1 | Agg | -gg | 3 | 40 | All | 0.000001 |
S | 190 | R190S | agG | agT | 39 | 39 | B.1.1 | 0.000707 |
S | 190 | R190M | aGg | aTg | 38 | 38 | B.1.1.7 | 0.000034 |
S | 190 | R190G | Agg | Ggg | 36 | 36 | B.1.1.7 | 0.000032 |
S | 190 | R190M | aGg | aTg | 35 | 35 | B.1.596 | 0.00305 |
S | 190 | R190K | aGg | aAg | 33 | 33 | AY.44 | 0.000201 |
S | 190 | R190R | agG | agA | 32 | 32 | AY.4 | 0.00005 |
S | 190 | R190S | agG | agT | 32 | 32 | C.36.3.1 | 0.086957 |
S | 190 | R190del | AGG | --- | 30 | 30 | P.1 | 0.000473 |
S | 190 | R190R | agG | agA | 28 | 28 | C.35 | 0.021672 |
S | 190 | R190S | agG | agT | 28 | 28 | P.1.3 | 0.965517 |
S | 190 | R190W | Agg | Tgg | 27 | 27 | AY.44 | 0.000164 |
S | 190 | R190K | aGg | aAg | 26 | 26 | B.1.177 | 0.000342 |
S | 190 | R190R | agG | agA | 22 | 25 | AY.43 | 0.000097 |
S | 190 | R190R | AgG | CgT | 1 | 25 | AY.43 | 0.000004 |
S | 190 | R190R | Agg | Cgg | 1 | 25 | AY.43 | 0.000004 |
S | 190 | R190R | AgG | CgA | 1 | 25 | AY.43 | 0.000004 |
S | 190 | R190M | aGg | aTg | 24 | 24 | AY.4 | 0.000037 |
S | 190 | R190S | agG | agT | 24 | 24 | B.1.1.528 | 0.115385 |
S | 190 | R190S | agG | agT | 24 | 24 | P.1.10.2 | 1 |
S | 190 | R190M | aGg | aTg | 23 | 23 | AY.39.1 | 0.000911 |
S | 190 | R190R | agG | agA | 23 | 23 | B.1.429 | 0.000541 |
S | 190 | R190I | aGG | aTT | 19 | 21 | All | 0.000004 |
S | 190 | R190I | aGG | aTC | 1 | 21 | All | 0 |
S | 190 | R190I | aGG | aTA | 1 | 21 | All | 0 |
S | 190 | R190R | agG | agA | 21 | 21 | AY.33 | 0.001402 |
S | 190 | R190K | aGg | aAg | 21 | 21 | B.1.2 | 0.000185 |
S | 190 | R190S | agG | agT | 21 | 21 | B.1.576 | 0.019039 |
S | 190 | R190S | agG | agT | 21 | 21 | B.1.617.2 | 0.000079 |
S | 190 | R190K | aGg | aAg | 21 | 21 | C.39 | 0.396226 |
S | 190 | R190S | agG | agT | 20 | 20 | AY.99.2 | 0.001843 |
S | 190 | R190R | agG | agA | 19 | 19 | B.1.2 | 0.000167 |
S | 190 | R190R | agG | agA | 18 | 18 | A.23.1 | 0.012676 |
S | 190 | R190N | aGG | aAC | 14 | 18 | All | 0.000003 |
S | 190 | R190N | aGG | aAT | 4 | 18 | All | 0.000001 |
S | 190 | R190R | agG | agA | 18 | 18 | B.1.1 | 0.000327 |
S | 190 | R190R | agG | agA | 18 | 18 | B.1.177 | 0.000237 |
S | 190 | R190S | agG | agT | 15 | 16 | AY.4 | 0.000023 |
S | 190 | R190S | agG | agC | 1 | 16 | AY.4 | 0.000002 |
S | 190 | R190K | aGg | aAg | 15 | 15 | AY.25 | 0.00009 |
S | 190 | R190W | Agg | Tgg | 15 | 15 | B.1.1.519 | 0.000596 |
S | 190 | R190S | agG | agT | 15 | 15 | B.1.214.2 | 0.008993 |
S | 190 | R190K | aGg | aAg | 15 | 15 | B.1.617.2 | 0.000056 |
S | 190 | R190R | agG | agA | 13 | 14 | AY.100 | 0.000598 |
S | 190 | R190R | Agg | Cgg | 1 | 14 | AY.100 | 0.000046 |
S | 190 | R190K | aGg | aAg | 14 | 14 | B.1.1.37 | 0.0027 |
S | 190 | R190R | agG | agA | 14 | 14 | B.1.258 | 0.000932 |
S | 190 | R190M | aGg | aTg | 14 | 14 | B.1.617.2 | 0.000053 |
S | 190 | R190S | agG | agT | 14 | 14 | C.37 | 0.001625 |
S | 190 | R190K | aGg | aAg | 13 | 13 | AY.20 | 0.000505 |
S | 190 | R190G | Agg | Ggg | 11 | 13 | AY.43 | 0.000049 |
S | 190 | R190G | AgG | GgT | 1 | 13 | AY.43 | 0.000004 |
S | 190 | R190G | AgG | GgA | 1 | 13 | AY.43 | 0.000004 |
S | 190 | R190M | aGg | aTg | 13 | 13 | AY.44 | 0.000079 |
S | 190 | R190R | agG | agA | 13 | 13 | B.1 | 0.000119 |
S | 190 | R190S | agG | agT | 13 | 13 | P.1.5 | 1 |
S | 190 | R190S | agG | agT | 12 | 12 | AY.39 | 0.000297 |
S | 190 | R190del | AGG | --- | 12 | 12 | AY.43 | 0.000053 |
S | 190 | R190R | agG | agA | 12 | 12 | B.1.110.3 | 0.008621 |
S | 190 | R190del | AGG | --- | 12 | 12 | B.1.177 | 0.000158 |
S | 190 | R190K | aGg | aAg | 11 | 11 | AY.103 | 0.000068 |
S | 190 | R190R | agG | agA | 11 | 11 | AY.32 | 0.005857 |
S | 190 | R190W | Agg | Tgg | 11 | 11 | B.1.1.7 | 0.00001 |
S | 190 | R190del1 | aGg | a-g | 11 | 11 | B.1.2 | 0.000097 |
S | 190 | R190I | aGG | aTT | 11 | 11 | P.1 | 0.000173 |
S | 190 | R190del2 | aGG | a-- | 8 | 10 | All | 0.000002 |
S | 190 | R190del2 | AGg | --g | 2 | 10 | All | 0 |
S | 190 | R190del | AGG | --- | 10 | 10 | B.1 | 0.000092 |
S | 190 | R190R | agG | agA | 10 | 10 | B.1.221 | 0.00071 |
S | 190 | R190S | agG | agT | 10 | 10 | B.1.243 | 0.000696 |
S | 190 | R190K | aGg | aAg | 10 | 10 | B.1.618 | 0.040323 |
S | 190 | R190X | AGg | TAg | 8 | 9 | All | 0.000002 |
S | 190 | R190T | aGg | aCg | 4 | 9 | All | 0.000001 |
S | 190 | R190T | aGG | aCT | 4 | 9 | All | 0.000001 |
S | 190 | R190X | AgG | TgA | 1 | 9 | All | 0 |
S | 190 | R190T | aGG | aCA | 1 | 9 | All | 0 |
S | 190 | R190N | aGG | aAC | 9 | 9 | AY.24 | 0.003879 |
S | 190 | R190R | agG | agA | 9 | 9 | AY.34 | 0.000873 |
S | 190 | R190W | Agg | Tgg | 9 | 9 | AY.4 | 0.000014 |
S | 190 | R190S | agG | agT | 9 | 9 | AY.43 | 0.00004 |
S | 190 | R190S | agG | agT | 9 | 9 | AY.44 | 0.000055 |
S | 190 | R190R | agG | agA | 9 | 9 | B.1.526 | 0.000212 |
S | 190 | R190del | AGG | --- | 9 | 9 | P.1.15 | 0.002091 |
S | 190 | R190M | aGg | aTg | 8 | 8 | AY.118 | 0.000501 |
S | 190 | R190S | agG | agT | 8 | 8 | AY.25 | 0.000048 |
S | 190 | R190R | agG | agA | 8 | 8 | AY.3 | 0.00008 |
S | 190 | R190del | AGG | --- | 8 | 8 | AY.4 | 0.000012 |
S | 190 | R190del | AGG | --- | 8 | 8 | AY.4.5 | 0.00086 |
S | 190 | R190del1 | aGg | a-g | 7 | 8 | AY.44 | 0.000043 |
S | 190 | R190del1 | Agg | -gg | 1 | 8 | AY.44 | 0.000006 |
S | 190 | R190K | aGg | aAg | 8 | 8 | AY.69 | 0.001493 |
S | 190 | R190R | Agg | Cgg | 4 | 8 | B.1.1.153 | 0.004381 |
S | 190 | R190R | agG | agA | 4 | 8 | B.1.1.153 | 0.004381 |
S | 190 | R190I | aGG | aTT | 8 | 8 | P.1.14 | 0.000382 |
S | 190 | R190S | agG | agT | 7 | 7 | A.2.5 | 0.003493 |
S | 190 | R190R | agG | agA | 7 | 7 | AY.103 | 0.000043 |
S | 190 | R190R | agG | agA | 7 | 7 | AY.20 | 0.000272 |
S | 190 | R190M | aGg | aTg | 7 | 7 | AY.25 | 0.000042 |
S | 190 | R190R | agG | agA | 7 | 7 | AY.29 | 0.00011 |
S | 190 | R190G | Agg | Ggg | 7 | 7 | AY.4 | 0.000011 |
S | 190 | R190G | Agg | Ggg | 7 | 7 | AY.44 | 0.000043 |
S | 190 | R190R | agG | agA | 7 | 7 | AY.44 | 0.000043 |
S | 190 | R190K | aGg | aAg | 7 | 7 | B.1 | 0.000064 |
S | 190 | R190R | agG | agA | 7 | 7 | B.1.1.318 | 0.002112 |
S | 190 | R190M | aGg | aTg | 7 | 7 | B.1.177 | 0.000092 |
S | 190 | R190R | agG | agA | 7 | 7 | P.2 | 0.001306 |
S | 190 | R190R | agG | agA | 5 | 6 | AY.120 | 0.000186 |
S | 190 | R190R | Agg | Cgg | 1 | 6 | AY.120 | 0.000037 |
S | 190 | R190R | agG | agA | 6 | 6 | AY.121 | 0.000812 |
S | 190 | R190R | agG | agA | 6 | 6 | AY.13 | 0.000966 |
S | 190 | R190K | aGg | aAg | 6 | 6 | AY.43 | 0.000027 |
S | 190 | R190R | agG | agA | 6 | 6 | AY.74 | 0.000694 |
S | 190 | R190S | agG | agT | 6 | 6 | B | 0.000767 |
S | 190 | R190M | aGg | aTg | 6 | 6 | B.1 | 0.000055 |
S | 190 | R190R | agG | agA | 6 | 6 | B.1.1.519 | 0.000238 |
S | 190 | R190S | agG | agT | 6 | 6 | B.1.427 | 0.000303 |
S | 190 | R190G | Agg | Ggg | 6 | 6 | B.1.617.2 | 0.000023 |
S | 190 | R190G | Agg | Ggg | 6 | 6 | B.1.637 | 0.000438 |
S | 190 | R190del | AGG | --- | 6 | 6 | C.37 | 0.000696 |
S | 190 | R190del | AGG | --- | 6 | 6 | P.1.16 | 0.002245 |
S | 190 | R190K | aGg | aAg | 5 | 5 | B.1.1 | 0.000091 |
S | 190 | R190S | agG | agT | 5 | 5 | B.1.1.161 | 0.017668 |
S | 190 | R190S | agG | agT | 5 | 5 | B.1.1.28 | 0.001556 |
S | 190 | R190K | aGg | aAg | 5 | 5 | B.1.351 | 0.000149 |
S | 190 | R190S | agG | agT | 5 | 5 | B.1.396 | 0.003529 |
S | 190 | R190K | aGg | aAg | 5 | 5 | B.1.429 | 0.000118 |
S | 190 | R190del | AGG | --- | 5 | 5 | B.1.617.2 | 0.000019 |
S | 190 | R190S | agG | agT | 4 | 4 | AY.103 | 0.000025 |
S | 190 | R190G | Agg | Ggg | 4 | 4 | AY.33 | 0.000267 |
S | 190 | R190S | agG | agT | 4 | 4 | AY.34.1 | 0.00204 |
S | 190 | R190G | Agg | Ggg | 4 | 4 | AY.39.1 | 0.000158 |
S | 190 | R190M | aGg | aTg | 4 | 4 | AY.42 | 0.000161 |
S | 190 | R190G | Agg | Ggg | 4 | 4 | AY.46 | 0.000416 |
S | 190 | R190S | agG | agT | 4 | 4 | AY.5 | 0.000083 |
S | 190 | R190R | agG | agA | 4 | 4 | AY.7.2 | 0.002237 |
S | 190 | R190G | Agg | Ggg | 4 | 4 | AY.9.1 | 0.000335 |
S | 190 | R190G | Agg | Ggg | 4 | 4 | AY.9.2 | 0.000147 |
S | 190 | R190S | agG | agT | 4 | 4 | AY.9.2 | 0.000147 |
S | 190 | R190M | aGg | aTg | 4 | 4 | B.1.1.519 | 0.000159 |
S | 190 | R190R | agG | agA | 4 | 4 | B.1.160 | 0.000125 |
S | 190 | R190G | Agg | Ggg | 4 | 4 | B.1.2 | 0.000035 |
S | 190 | R190S | agG | agT | 4 | 4 | B.1.351 | 0.000119 |
S | 190 | R190K | aGg | aAg | 4 | 4 | B.1.427 | 0.000202 |
S | 190 | R190K | aGg | aAg | 4 | 4 | B.1.596 | 0.000349 |
S | 190 | R190M | aGg | aTg | 4 | 4 | C.37 | 0.000464 |
S | 190 | R190S | agG | agT | 4 | 4 | N.5 | 0.007067 |
S | 190 | R190T | aGG | aCT | 4 | 4 | P.1 | 0.000063 |
S | 190 | R190N | aGG | aAT | 4 | 4 | P.1 | 0.000063 |
S | 190 | R190M | aGg | aTg | 4 | 4 | P.2 | 0.000747 |
S | 190 | R190X | AGg | TAg | 2 | 3 | 0.111111 | |
S | 190 | R190X | AgG | TgA | 1 | 3 | 0.055556 | |
S | 190 | R190A | AGG | GCT | 1 | 3 | All | 0 |
S | 190 | R190P | AGg | CCg | 1 | 3 | All | 0 |
S | 190 | R190P | AGG | CCT | 1 | 3 | All | 0 |
S | 190 | R190A | AGG | GCA | 1 | 3 | All | 0 |
S | 190 | R190A | AGg | GCg | 1 | 3 | All | 0 |
S | 190 | R190P | AGG | CCA | 1 | 3 | All | 0 |
S | 190 | R190M | aGg | aTg | 3 | 3 | AY.119 | 0.000106 |
S | 190 | R190K | aGg | aAg | 3 | 3 | AY.119 | 0.000106 |
S | 190 | R190S | agG | agT | 3 | 3 | AY.121 | 0.000406 |
S | 190 | R190G | Agg | Ggg | 3 | 3 | AY.20 | 0.000117 |
S | 190 | R190del | AGG | --- | 3 | 3 | AY.25 | 0.000018 |
S | 190 | R190G | Agg | Ggg | 3 | 3 | AY.25 | 0.000018 |
S | 190 | R190K | aGg | aAg | 3 | 3 | AY.39 | 0.000074 |
S | 190 | R190P | AGg | CCg | 1 | 3 | AY.43 | 0.000004 |
S | 190 | R190P | AGG | CCA | 1 | 3 | AY.43 | 0.000004 |
S | 190 | R190P | AGG | CCT | 1 | 3 | AY.43 | 0.000004 |
S | 190 | R190A | AGG | GCT | 1 | 3 | AY.43 | 0.000004 |
S | 190 | R190A | AGg | GCg | 1 | 3 | AY.43 | 0.000004 |
S | 190 | R190A | AGG | GCA | 1 | 3 | AY.43 | 0.000004 |
S | 190 | R190K | aGg | aAg | 3 | 3 | AY.65 | 0.001599 |
S | 190 | R190S | agG | agT | 3 | 3 | AY.68 | 0.000821 |
S | 190 | R190R | agG | agA | 3 | 3 | AY.9 | 0.000203 |
S | 190 | R190R | agG | agA | 3 | 3 | AY.93 | 0.000819 |
S | 190 | R190R | agG | agA | 3 | 3 | AZ.3 | 0.004559 |
S | 190 | R190M | aGg | aTg | 3 | 3 | B.1.1 | 0.000054 |
S | 190 | R190K | aGg | aAg | 3 | 3 | B.1.1.306 | 0.001315 |
S | 190 | R190S | agG | agT | 3 | 3 | B.1.1.317 | 0.001235 |
S | 190 | R190K | aGg | aAg | 3 | 3 | B.1.1.420 | 0.003018 |
S | 190 | R190del1 | aGg | a-g | 3 | 3 | B.1.1.7 | 0.000003 |
S | 190 | R190del2 | aGG | a-- | 2 | 3 | B.1.1.7 | 0.000002 |
S | 190 | R190del2 | AGg | --g | 1 | 3 | B.1.1.7 | 0.000001 |
S | 190 | R190K | aGg | aAg | 3 | 3 | B.1.160 | 0.000094 |
S | 190 | R190R | agG | agA | 3 | 3 | B.1.177.21 | 0.000229 |
S | 190 | R190S | agG | agT | 3 | 3 | B.1.2 | 0.000026 |
S | 190 | R190M | aGg | aTg | 3 | 3 | B.1.258 | 0.0002 |
S | 190 | R190K | aGg | aAg | 3 | 3 | B.1.320 | 0.003736 |
S | 190 | R190R | agG | agA | 3 | 3 | B.1.351 | 0.000089 |
S | 190 | R190S | agG | agT | 3 | 3 | B.1.596 | 0.000261 |
S | 190 | R190W | Agg | Tgg | 3 | 3 | B.1.617.2 | 0.000011 |
S | 190 | R190S | agG | agT | 3 | 3 | B.1.636 | 0.020134 |
S | 190 | R190K | aGg | aAg | 3 | 3 | C.37 | 0.000348 |
S | 190 | R190G | Agg | Ggg | 3 | 3 | C.37 | 0.000348 |
S | 190 | R190R | agG | agA | 3 | 3 | C.37 | 0.000348 |
S | 190 | R190M | aGg | aTg | 3 | 3 | D.2 | 0.000225 |
S | 190 | R190S | agG | agT | 3 | 3 | Q.1 | 0.000379 |
S | 190 | R190L | AGg | TTg | 1 | 2 | 0.055556 | |
S | 190 | R190I | aGG | aTA | 1 | 2 | 0.055556 | |
S | 190 | R190I | aGG | aTC | 1 | 2 | 0.055556 | |
S | 190 | R190L | AGG | TTA | 1 | 2 | 0.055556 | |
S | 190 | R190S | agG | agT | 2 | 2 | A | 0.000774 |
S | 190 | R190L | AGG | TTA | 1 | 2 | All | 0 |
S | 190 | R190L | AGg | TTg | 1 | 2 | All | 0 |
S | 190 | R190R | agG | agA | 2 | 2 | AU.3 | 0.004219 |
S | 190 | R190R | agG | agA | 2 | 2 | AY.102 | 0.000053 |
S | 190 | R190G | Agg | Ggg | 2 | 2 | AY.103 | 0.000012 |
S | 190 | R190M | aGg | aTg | 2 | 2 | AY.117 | 0.000169 |
S | 190 | R190del | AGG | --- | 2 | 2 | AY.120 | 0.000074 |
S | 190 | R190R | agG | agA | 2 | 2 | AY.14 | 0.000176 |
S | 190 | R190N | aGG | aAC | 2 | 2 | AY.25 | 0.000012 |
S | 190 | R190G | Agg | Ggg | 2 | 2 | AY.26 | 0.000057 |
S | 190 | R190R | agG | agA | 2 | 2 | AY.26 | 0.000057 |
S | 190 | R190K | aGg | aAg | 2 | 2 | AY.26 | 0.000057 |
S | 190 | R190del | AGG | --- | 2 | 2 | AY.29 | 0.000032 |
S | 190 | R190G | Agg | Ggg | 2 | 2 | AY.3 | 0.00002 |
S | 190 | R190M | aGg | aTg | 2 | 2 | AY.3 | 0.00002 |
S | 190 | R190G | Agg | Ggg | 2 | 2 | AY.39 | 0.000049 |
S | 190 | R190del1 | aGg | a-g | 1 | 2 | AY.4 | 0.000002 |
S | 190 | R190del1 | Agg | -gg | 1 | 2 | AY.4 | 0.000002 |
S | 190 | R190del1 | aGg | a-g | 1 | 2 | AY.43 | 0.000004 |
S | 190 | R190del1 | Agg | -gg | 1 | 2 | AY.43 | 0.000004 |
S | 190 | R190del | AGG | --- | 2 | 2 | AY.44 | 0.000012 |
S | 190 | R190S | agG | agT | 2 | 2 | AY.45 | 0.000243 |
S | 190 | R190del | AGG | --- | 2 | 2 | AY.46.2 | 0.001271 |
S | 190 | R190M | aGg | aTg | 2 | 2 | AY.47 | 0.000062 |
S | 190 | R190M | aGg | aTg | 2 | 2 | AY.55 | 0.001835 |
S | 190 | R190M | aGg | aTg | 2 | 2 | AY.6 | 0.000082 |
S | 190 | R190R | agG | agA | 2 | 2 | AY.69 | 0.000373 |
S | 190 | R190S | agG | agT | 2 | 2 | AY.75 | 0.000112 |
S | 190 | R190del | AGG | --- | 2 | 2 | AY.9 | 0.000135 |
S | 190 | R190G | Agg | Ggg | 2 | 2 | B.1 | 0.000018 |
S | 190 | R190G | Agg | Ggg | 2 | 2 | B.1.1 | 0.000036 |
S | 190 | R190del | AGG | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 190 | R190S | agG | agT | 2 | 2 | B.1.1.1 | 0.000653 |
S | 190 | R190K | aGg | aAg | 2 | 2 | B.1.1.214 | 0.000111 |
S | 190 | R190S | agG | agT | 2 | 2 | B.1.1.368 | 0.006173 |
S | 190 | R190K | aGg | aAg | 2 | 2 | B.1.1.519 | 0.000079 |
S | 190 | R190W | Agg | Tgg | 2 | 2 | B.1.160 | 0.000062 |
S | 190 | R190del | AGG | --- | 2 | 2 | B.1.177.16 | 0.001329 |
S | 190 | R190R | agG | agA | 2 | 2 | B.1.177.19 | 0.002861 |
S | 190 | R190R | agG | agA | 2 | 2 | B.1.177.60 | 0.000437 |
S | 190 | R190S | agG | agT | 2 | 2 | B.1.177.86 | 0.000367 |
S | 190 | R190K | aGg | aAg | 2 | 2 | B.1.177.9 | 0.002663 |
S | 190 | R190M | aGg | aTg | 2 | 2 | B.1.2 | 0.000018 |
S | 190 | R190del | AGG | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 190 | R190M | aGg | aTg | 2 | 2 | B.1.234 | 0.000264 |
S | 190 | R190M | aGg | aTg | 2 | 2 | B.1.243 | 0.000139 |
S | 190 | R190K | aGg | aAg | 2 | 2 | B.1.258 | 0.000133 |
S | 190 | R190K | aGg | aAg | 2 | 2 | B.1.36 | 0.000292 |
S | 190 | R190R | agG | agA | 2 | 2 | B.1.36.36 | 0.001204 |
S | 190 | R190K | aGg | aAg | 2 | 2 | B.1.400 | 0.000858 |
S | 190 | R190S | agG | agT | 2 | 2 | B.1.429 | 0.000047 |
S | 190 | R190G | Agg | Ggg | 2 | 2 | B.1.429 | 0.000047 |
S | 190 | R190R | agG | agA | 2 | 2 | B.1.525 | 0.000226 |
S | 190 | R190S | agG | agT | 2 | 2 | B.1.526 | 0.000047 |
S | 190 | R190K | aGg | aAg | 2 | 2 | B.1.526 | 0.000047 |
S | 190 | R190S | agG | agT | 2 | 2 | B.1.575 | 0.000607 |
S | 190 | R190R | agG | agA | 2 | 2 | B.1.596 | 0.000174 |
S | 190 | R190R | agG | agA | 2 | 2 | B.1.602 | 0.013072 |
S | 190 | R190del1 | aGg | a-g | 2 | 2 | B.1.617.2 | 0.000008 |
S | 190 | R190S | agG | agT | 2 | 2 | B.1.621 | 0.000177 |
S | 190 | R190del | AGG | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 190 | R190R | agG | agA | 2 | 2 | B.1.621 | 0.000177 |
S | 190 | R190R | agG | agA | 2 | 2 | B.1.628 | 0.000705 |
S | 190 | R190S | agG | agT | 2 | 2 | B.1.637 | 0.000146 |
S | 190 | R190S | agG | agT | 2 | 2 | C.1 | 0.004785 |
S | 190 | R190R | agG | agA | 2 | 2 | C.36.3 | 0.001134 |
S | 190 | R190R | agG | agA | 2 | 2 | N.5 | 0.003534 |
S | 190 | R190K | aGg | aAg | 2 | 2 | Q.8 | 0.00033 |
S | 190 | R190F | AGG | TTC | 1 | 1 | 0.055556 | |
S | 190 | R190C | AgG | TgC | 1 | 1 | 0.055556 | |
S | 190 | R190W | Agg | Tgg | 1 | 1 | 0.055556 | |
S | 190 | R190R | agG | agA | 1 | 1 | 0.055556 | |
S | 190 | R190M | aGg | aTg | 1 | 1 | 0.055556 | |
S | 190 | R190S | agG | agC | 1 | 1 | 0.055556 | |
S | 190 | R190R | agG | agA | 1 | 1 | A | 0.000387 |
S | 190 | R190K | aGg | aAg | 1 | 1 | A.1 | 0.000282 |
S | 190 | R190S | agG | agT | 1 | 1 | A.18 | 0.05 |
S | 190 | R190S | agG | agT | 1 | 1 | A.2 | 0.000662 |
S | 190 | R190M | aGg | aTg | 1 | 1 | A.2.4 | 0.003367 |
S | 190 | R190del | AGG | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 190 | R190S | agG | agT | 1 | 1 | A.2.5.1 | 0.004808 |
S | 190 | R190S | agG | agT | 1 | 1 | A.3 | 0.002096 |
S | 190 | R190C | AgG | TgC | 1 | 1 | All | 0 |
S | 190 | R190F | AGG | TTC | 1 | 1 | All | 0 |
S | 190 | R190D | AGG | GAT | 1 | 1 | All | 0 |
S | 190 | R190del | AGG | --- | 1 | 1 | AY.100 | 0.000046 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.100 | 0.000046 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.102 | 0.000027 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.102 | 0.000027 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.102 | 0.000027 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.103 | 0.000006 |
S | 190 | R190X | AGg | TAg | 1 | 1 | AY.103 | 0.000006 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.105 | 0.000643 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.111 | 0.000183 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.113 | 0.000142 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.114 | 0.000231 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.116 | 0.000287 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.116.1 | 0.000311 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.116.1 | 0.000311 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | AY.117 | 0.000085 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.117 | 0.000085 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.118 | 0.000063 |
S | 190 | R190N | aGG | aAC | 1 | 1 | AY.119 | 0.000035 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | AY.119 | 0.000035 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | AY.120 | 0.000037 |
S | 190 | R190N | aGG | aAC | 1 | 1 | AY.120 | 0.000037 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.120.2 | 0.001285 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.121 | 0.000135 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.14 | 0.000088 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.16.1 | 0.00047 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.20 | 0.000039 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | AY.23 | 0.00007 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.23 | 0.00007 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.23 | 0.00007 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.23 | 0.00007 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.23 | 0.00007 |
S | 190 | R190del | AGG | --- | 1 | 1 | AY.24 | 0.000431 |
S | 190 | R190del | AGG | --- | 1 | 1 | AY.26 | 0.000028 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.26 | 0.000028 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.27 | 0.000065 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.29 | 0.000016 |
S | 190 | R190del | AGG | --- | 1 | 1 | AY.3 | 0.00001 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.3 | 0.00001 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | AY.3 | 0.00001 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.3 | 0.00001 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.30 | 0.000396 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.32 | 0.000532 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.33 | 0.000067 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.33 | 0.000067 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.34 | 0.000097 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.34 | 0.000097 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.34.1 | 0.00051 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | AY.34.1 | 0.00051 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.35 | 0.000233 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | AY.36 | 0.000148 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.38 | 0.000499 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.39 | 0.000025 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.39.1 | 0.00004 |
S | 190 | R190del2 | AGg | --g | 1 | 1 | AY.4 | 0.000002 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.4.1 | 0.000737 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.4.2 | 0.000022 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.4.2 | 0.000022 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.4.2 | 0.000022 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.40 | 0.000964 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.41 | 0.000294 |
S | 190 | R190T | aGG | aCA | 1 | 1 | AY.42 | 0.00004 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.43 | 0.000004 |
S | 190 | R190del2 | aGG | a-- | 1 | 1 | AY.44 | 0.000006 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.46 | 0.000104 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.46 | 0.000104 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.46.3 | 0.000934 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.46.6 | 0.000072 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.46.6 | 0.000072 |
S | 190 | R190del | AGG | --- | 1 | 1 | AY.47 | 0.000031 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.47 | 0.000031 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.5 | 0.000021 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.5 | 0.000021 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.5.3 | 0.000337 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.59 | 0.00053 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.61 | 0.000105 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.63 | 0.000387 |
S | 190 | R190del2 | aGG | a-- | 1 | 1 | AY.67 | 0.000464 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.68 | 0.000274 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.68 | 0.000274 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.69 | 0.000187 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.7.2 | 0.000559 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.71 | 0.000475 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.74 | 0.000116 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.75 | 0.000056 |
S | 190 | R190T | aGg | aCg | 1 | 1 | AY.75 | 0.000056 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.75.1 | 0.00018 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | AY.75.1 | 0.00018 |
S | 190 | R190R | agG | agA | 1 | 1 | AY.79 | 0.001211 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | AY.80 | 0.001129 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.88 | 0.000884 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | AY.9 | 0.000068 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.9.2 | 0.000037 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | AY.9.2 | 0.000037 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.92 | 0.000287 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.94 | 0.000443 |
S | 190 | R190del | AGG | --- | 1 | 1 | AY.96 | 0.002075 |
S | 190 | R190S | agG | agT | 1 | 1 | AY.98.1 | 0.000048 |
S | 190 | R190T | aGg | aCg | 1 | 1 | AY.98.1 | 0.000048 |
S | 190 | R190M | aGg | aTg | 1 | 1 | AY.98.1 | 0.000048 |
S | 190 | R190K | aGg | aAg | 1 | 1 | AY.98.1 | 0.000048 |
S | 190 | R190del | AGG | --- | 1 | 1 | B | 0.000128 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | B | 0.000128 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | B | 0.000128 |
S | 190 | R190T | aGg | aCg | 1 | 1 | B.1 | 0.000009 |
S | 190 | R190del2 | aGG | a-- | 1 | 1 | B.1 | 0.000009 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | B.1.1 | 0.000018 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.1.1 | 0.000327 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.1 | 0.000327 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.157 | 0.000913 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.1.170 | 0.001247 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.176 | 0.000439 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.1.220 | 0.001859 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.226 | 0.005814 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.1.28 | 0.000311 |
S | 190 | R190M | aGg | aTg | 1 | 1 | B.1.1.28 | 0.000311 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.1.294 | 0.001266 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.298 | 0.000862 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.1.304 | 0.002809 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.348 | 0.000796 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.1.353 | 0.020833 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.369 | 0.000446 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.1.409 | 0.002833 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.1.519 | 0.00004 |
S | 190 | R190X | AGg | TAg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.1.70 | 0.000341 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.108 | 0.005814 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | B.1.147 | 0.000756 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 190 | R190X | AGg | TAg | 1 | 1 | B.1.160 | 0.000031 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.177 | 0.000013 |
S | 190 | R190T | aGg | aCg | 1 | 1 | B.1.177 | 0.000013 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.177.10 | 0.000878 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 190 | R190del2 | aGG | a-- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.177.57 | 0.000281 |
S | 190 | R190del2 | aGG | a-- | 1 | 1 | B.1.177.57 | 0.000281 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.177.58 | 0.001332 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.177.60 | 0.000218 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.177.73 | 0.000566 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.177.77 | 0.000726 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | B.1.2 | 0.000009 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.214 | 0.003663 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.215 | 0.009615 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | B.1.221 | 0.000071 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.234 | 0.000132 |
S | 190 | R190del2 | aGG | a-- | 1 | 1 | B.1.258 | 0.000067 |
S | 190 | R190X | AGg | TAg | 1 | 1 | B.1.258 | 0.000067 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | B.1.258 | 0.000067 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | B.1.258.11 | 0.000396 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.258.21 | 0.007752 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.258.3 | 0.001675 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.298 | 0.002114 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.311 | 0.000275 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.319 | 0.003049 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.349 | 0.000715 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | B.1.351 | 0.00003 |
S | 190 | R190M | aGg | aTg | 1 | 1 | B.1.351 | 0.00003 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.356 | 0.001727 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.36 | 0.000146 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.36.16 | 0.001425 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.36.37 | 0.002778 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.36.8 | 0.001 |
S | 190 | R190S | agG | agC | 1 | 1 | B.1.36.8 | 0.001 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | B.1.377 | 0.004566 |
S | 190 | R190X | AGg | TAg | 1 | 1 | B.1.391 | 0.001127 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | B.1.391 | 0.001127 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.391 | 0.001127 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.399 | 0.001934 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.416.1 | 0.001563 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.422 | 0.000812 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | B.1.427 | 0.00005 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.427 | 0.00005 |
S | 190 | R190del1 | aGg | a-g | 1 | 1 | B.1.429 | 0.000024 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.438.1 | 0.000107 |
S | 190 | R190M | aGg | aTg | 1 | 1 | B.1.466.2 | 0.000391 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | B.1.510 | 0.026316 |
S | 190 | R190M | aGg | aTg | 1 | 1 | B.1.526 | 0.000024 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.533 | 0.009615 |
S | 190 | R190M | aGg | aTg | 1 | 1 | B.1.540 | 0.009709 |
S | 190 | R190M | aGg | aTg | 1 | 1 | B.1.546 | 0.003704 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.567 | 0.003333 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | B.1.589 | 0.007576 |
S | 190 | R190K | aGg | aAg | 1 | 1 | B.1.609 | 0.000479 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 190 | R190X | AGg | TAg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 190 | R190N | aGG | aAC | 1 | 1 | B.1.617.2 | 0.000004 |
S | 190 | R190W | Agg | Tgg | 1 | 1 | B.1.619 | 0.000871 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.619.1 | 0.000641 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.623 | 0.000536 |
S | 190 | R190R | agG | agA | 1 | 1 | B.1.630 | 0.005236 |
S | 190 | R190S | agG | agT | 1 | 1 | B.1.635 | 0.017544 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 190 | R190del | AGG | --- | 1 | 1 | B.34 | 0.013699 |
S | 190 | R190K | aGg | aAg | 1 | 1 | C.23 | 0.005814 |
S | 190 | R190S | agG | agT | 1 | 1 | C.35 | 0.000774 |
S | 190 | R190R | agG | agA | 1 | 1 | D.2 | 0.000075 |
S | 190 | R190K | aGg | aAg | 1 | 1 | D.2 | 0.000075 |
S | 190 | R190D | AGG | GAT | 1 | 1 | P.1 | 0.000016 |
S | 190 | R190R | agG | agA | 1 | 1 | P.1 | 0.000016 |
S | 190 | R190K | aGg | aAg | 1 | 1 | P.1.1 | 0.000318 |
S | 190 | R190del | AGG | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 190 | R190K | aGg | aAg | 1 | 1 | P.1.15 | 0.000232 |
S | 190 | R190S | agG | agT | 1 | 1 | P.4 | 0.003802 |
S | 190 | R190S | agG | agT | 1 | 1 | P.7 | 0.004367 |
S | 190 | R190M | aGg | aTg | 1 | 1 | Q.1 | 0.000126 |
S | 190 | R190G | Agg | Ggg | 1 | 1 | Q.1 | 0.000126 |
S | 190 | R190R | agG | agA | 1 | 1 | Q.3 | 0.000145 |
S | 190 | R190R | agG | agA | 1 | 1 | Q.8 | 0.000165 |
S | 190 | R190R | agG | agA | 1 | 1 | R.1 | 0.00009 |
S | 190 | R190del | AGG | --- | 1 | 1 | U.3 | 0.003861 |
S | 190 | R190R | agG | agA | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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