CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 19

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S19T19RnonsynaCaaGa271910927190650.99998421617-21619
S19T19RnonsynaCAaGG2719109350.000012871921617-21619
S19T19RnonsynACaCGa271910990.0000033099121617-21619
S19T19InonsynaCaaTa385138480.99922121617-21619
S19T19InonsynaCAaTT385120.00051934621617-21619
S19T19InonsynaCAaTC385110.00025967321617-21619
S19T19KnonsynaCaaAa371371121617-21619
S19T19deldelACA---152152121617-21619
S19T19GnonsynACaGGa135135121617-21619
S19T19AnonsynAcaGca108108121617-21619
S19T19TsynacAacT93520.5591421617-21619
S19T19SnonsynaCAaGC93400.43010821617-21619
S19T19TsynacAacG93380.40860221617-21619
S19T19SnonsynaCAaGT93310.33333321617-21619
S19T19SnonsynAcaTca93220.23655921617-21619
S19T19TsynacAacC9330.032258121617-21619
S19T19del1delaCaa-a1270.58333321617-21619
S19T19del1delacAac-1250.41666721617-21619
S19T19PnonsynAcaCca870.87521617-21619
S19T19LnonsynACaCTa820.2521617-21619
S19T19LnonsynACACTG820.2521617-21619
S19T19LnonsynACaTTa820.2521617-21619
S19T19LnonsynACATTG820.2521617-21619
S19T19PnonsynAcACcC810.12521617-21619
S19T19XnonsynACaTAa520.421617-21619
S19T19XnonsynACATAG520.421617-21619
S19T19XnonsynACaTGa510.221617-21619
S19T19QnonsynACACAG420.521617-21619
S19T19QnonsynACaCAa420.521617-21619
S19T19del2delaCAa--22121617-21619

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S19T19RaCaaGa27190652719109All0.520053
S19T19RaCAaGG352719109All0.000007
S19T19RACaCGa92719109All0.000002
S19T19RaCaaGa642163642170AY.40.999477
S19T19RaCAaGG4642170AY.40.000006
S19T19RACaCGa3642170AY.40.000005
S19T19RaCaaGa262667262676B.1.617.20.98905
S19T19RaCAaGG9262676B.1.617.20.000034
S19T19RaCaaGa222270222272AY.430.984759
S19T19RaCAaGG2222272AY.430.000009
S19T19RaCaaGa163799163804AY.250.985222
S19T19RaCAaGG5163804AY.250.00003
S19T19RaCaaGa160091160092AY.440.974436
S19T19RaCAaGG1160092AY.440.000006
S19T19RaCaaGa158409158411AY.1030.983571
S19T19RACaCGa1158411AY.1030.000006
S19T19RaCAaGG1158411AY.1030.000006
S19T19RaCaaGa9915899158AY.30.986264
S19T19RaCaaGa6332063320AY.290.998785
S19T19RaCaaGa4796947969AY.50.990522
S19T19RaCaaGa4605846058AY.4.20.998937
S19T19RaCaaGa3771637716AY.390.932019
S19T19RaCaaGa3751837518AY.1020.99475
S19T19RaCaaGa3479234792AY.260.984967
S19T19RaCaaGa3175431754AY.470.987713
S19T19RaCaaGa2788227882AY.1190.984464
S19T19RaCaaGa2677626776AY.1200.995501
S19T19RaCaaGa2673126731AY.9.20.981819
S19T19RaCaaGa2534525345AY.200.985037
S19T19RaCaaGa2476024760AY.39.10.980827
S19T19RaCaaGa2420724207AY.60.995599
S19T19RaCaaGa2356023561AY.420.947822
S19T19RaCAaGG123561AY.420.00004
S19T19RaCaaGa2127721277AY.1000.978883
S19T19RaCaaGa2039120392AY.98.10.987553
S19T19RaCAaGG120392AY.98.10.000048
S19T19RaCaaGa1693616936AY.750.948796
S19T19RaCaaGa1570515705AY.1180.983899
S19T19RaCaaGa1544015440AY.270.999288
S19T19RaCaaGa1472114721AY.90.995066
S19T19RaCaaGa1470214702AY.330.98177
S19T19RaCaaGa1378513785AY.230.961498
S19T19RaCaaGa1363513635AY.46.60.984548
S19T19RaCaaGa1185011850AY.9.10.99213
S19T19RaCaaGa1173411735AY.980.926929
S19T19RaCAaGG111735AY.980.000079
S19T19RaCaaGa1161111616AY.3.10.989939
S19T19RaCAaGG511616AY.3.10.000426
S19T19RaCaaGa1153411534AY.1170.974814
S19T19RaCaaGa1122111221AY.140.98759
S19T19RaCaaGa1068710687AY.99.20.984886
S19T19RaCaaGa1025910263AY.540.978166
S19T19RACaCGa410263AY.540.000381
S19T19RaCaaGa1023010230AY.340.991952
S19T19RaCaaGa94159415AY.610.986484
S19T19RaCaaGa93179317AY.460.969713
S19T19RaCaaGa91719171AY.4.50.985811
S19T19RaCaaGa88208820AY.1100.993915
S19T19RaCaaGa88008800AY.7.10.991773
S19T19RaCaaGa86328632AY.740.998265
S19T19RaCaaGa78567856AY.450.95595
S19T19RaCaaGa72517251AY.1210.981191
S19T19RaCaaGa69196919AY.1130.985192
S19T19RaCaaGa67016701AY.4.2.10.998361
S19T19RaCaaGa66426643AY.360.984438
S19T19RaCAaGG16643AY.360.000148
S19T19RaCaaGa60426042AY.130.972634
S19T19RaCaaGa60396039AY.46.40.99342
S19T19RaCaaGa54055405AY.1110.989927
S19T19RaCaaGa53425342AY.690.9972
S19T19RaCaaGa51535153AY.75.10.929138
S19T19RaCaaGa50665066AY.70.992944
S19T19RaCaaGa50335033AY.46.50.998611
S19T19RaCaaGa47694769AY.700.99437
S19T19RaCaaGa45344534AY.29.10.999779
S19T19RaCaaGa42444244AY.350.989047
S19T19RaCaaGa42374237AY.1140.9792
S19T19IaCaaTa38483851All0.000736
S19T19IaCAaTT23851All0
S19T19IaCAaTC13851All0
S19T19RaCaaGa36573657AY.930.998635
S19T19RaCaaGa35653565AY.5.40.986442
S19T19RaCaaGa34363436AY.1160.985374
S19T19RaCaaGa34233423AY.530.984186
S19T19RaCaaGa34053405AY.680.932111
S19T19RaCaaGa33623362AY.410.988242
S19T19RaCaaGa31713171AY.920.910945
S19T19RaCaaGa31483148AY.116.10.98038
S19T19RaCaaGa31103110AY.370.982933
S19T19RaCaaGa30383038AY.120.10.975281
S19T19RaCaaGa29292929AY.1060.980911
S19T19RaCaaGa29192919AY.120.922566
S19T19RaCaaGa27942794AY.5.30.942645
S19T19RaCaaGa27612761AY.20.983262
S19T19RaCaaGa25812581AY.630.998453
S19T19RaCaaGa25472547AY.160.96697
S19T19RaCaaGa24662466AY.300.975861
S19T19RaCaaGa24642464AY.10.975069
S19T19RaCaaGa24252425AY.4.40.992226
S19T19RaCaaGa23792379AY.23.10.992905
S19T19RaCaaGa22942294AY.850.979923
S19T19RaCaaGa22722272AY.240.97931
S19T19RaCaaGa22452245AY.620.978214
S19T19RaCaaGa22312231AY.940.987605
S19T19RaCaaGa22062206AY.840.965004
S19T19RaCaaGa21072107AY.480.98
S19T19RaCaaGa21042104AY.1070.980429
S19T19RaCaaGa20892089AY.670.969824
S19T19RaCaaGa20892089AY.710.992399
S19T19RaCaaGa19951995AY.120.2.10.994021
S19T19RaCaaGa19871987AY.1010.974497
S19T19RaCaaGa19171917AY.380.957064
S19T19RaCaaGa18781878AY.100.995231
S19T19RaCaaGa18751875AY.34.10.956145
S19T19RaCaaGa18671867AY.16.10.87735
S19T19RaCaaGa18441844AY.320.981896
S19T19RaCaaGa18361841AY.590.972458
S19T19RaCAaGG41841AY.590.002119
S19T19RACaCGa11841AY.590.00053
S19T19RaCaaGa17701770AY.7.20.989933
S19T19RaCaaGa17681768B.10.016194
S19T19RaCaaGa17231723AY.650.918443
S19T19RaCaaGa16531653AY.640.983929
S19T19RaCaaGa16431643AY.80.995758
S19T19RaCaaGa15671567AY.46.20.995553
S19T19RaCaaGa15441544AY.1050.992926
S19T19RaCaaGa15171517AY.570.995407
S19T19RaCaaGa14781478AY.730.983367
S19T19RaCaaGa14551455AY.900.995893
S19T19RaCaaGa13791379AY.39.1.10.999275
S19T19RaCaaGa13521352AY.4.10.99705
S19T19RaCaaGa13191319AY.1090.975592
S19T19RaCaaGa13081308AY.910.955442
S19T19RaCaaGa12521252AY.950.952816
S19T19RaCaaGa12451245AY.500.995204
S19T19RaCaaGa11901190AY.860.987552
S19T19RaCaaGa11891189AY.870.990008
S19T19IaCaaTa11741175B.1.1.70.001051
S19T19IaCAaTT11175B.1.1.70.000001
S19T19RaCaaGa11171117AY.4.30.940236
S19T19RaCaaGa11091109AY.880.980548
S19T19RaCaaGa10941094AY.510.994545
S19T19RaCaaGa10831083AY.580.982759
S19T19RaCaaGa10771077AY.550.988073
S19T19RaCaaGa10571057AY.46.30.986928
S19T19RaCaaGa10491049AY.600.984053
S19T19IaCaaTa10431043B.1.3510.031005
S19T19RaCaaGa987987AY.400.951784
S19T19RaCaaGa948948AY.46.10.973306
S19T19RaCaaGa930930AY.520.757329
S19T19RaCaaGa924924AY.660.988235
S19T19RaCaaGa908908AY.990.952781
S19T19RaCaaGa884884AY.800.997743
S19T19RaCaaGa877877AY.1080.966924
S19T19RaCaaGa870870AY.770.980834
S19T19RaCaaGa854854AY.190.973774
S19T19RaCaaGa818818AY.790.990315
S19T19RaCaaGa744744AY.110.995984
S19T19RaCaaGa725725AY.720.986395
S19T19RaCaaGa719719AY.820.975577
S19T19RaCaaGa668668AY.120.20.858612
S19T19RaCaaGa644644AY.39.20.992296
S19T19RaCaaGa637637AY.780.98151
S19T19RaCaaGa636636AY.99.10.987578
S19T19RaCaaGa609609AY.560.977528
S19T19RaCaaGa575575AY.970.977891
S19T19RaCaaGa572572AY.830.986207
S19T19RaCaaGa522522AY.280.986767
S19T19RaCaaGa515515AY.210.97723
S19T19RaCaaGa506506AY.9.2.11
S19T19RaCaaGa497497AY.1040.986111
S19T19RaCaaGa490490AY.810.976096
S19T19RaCaaGa471471AY.220.985356
S19T19RaCaaGa450450AY.151
S19T19RaCaaGa436436AY.960.904564
S19T19RaCaaGa404404AY.5.20.995074
S19T19KaCaaAa371371All0.000071
S19T19RaCaaGa325325B.1.617.30.970149
S19T19RaCaaGa300300AY.490.958466
S19T19RaCaaGa266266AY.5.11
S19T19RaCaaGa246246AY.91.11
S19T19RaCaaGa206206AY.760.995169
S19T19RaCaaGa202202AY.890.990196
S19T19RaCaaGa185185AY.1150.963542
S19T19IaCaaTa156156AY.40.000243
S19T19delACA---152152All0.000029
S19T19RaCaaGa141141B0.018021
S19T19GACaGGa135135All0.000026
S19T19RaCaaGa122122AY.171
S19T19KaCaaAa122122B.1.177.870.088792
S19T19AAcaGca108108All0.000021
S19T19RaCaaGa9999AY.181
S19T19TacAacT5293All0.00001
S19T19SaCAaGC4093All0.000008
S19T19TacAacG3893All0.000007
S19T19SaCAaGT3193All0.000006
S19T19SAcaTca2293All0.000004
S19T19TacAacC393All0.000001
S19T19GACaGGa7979AY.40.000123
S19T19IaCaaTa7979AY.430.00035
S19T19IaCaaTa6969AY.1030.000428
S19T19RaCaaGa6262B.1.1.3740.147268
S19T19RaCaaGa6161B.1.1.70.000055
S19T19RaCaaGa6060B.1.10.001088
S19T19IaCaaTa5858P.10.000914
S19T19IaCaaTa5656B.1.6350.982456
S19T19RaCaaGa5454AY.311
S19T19IaCaaTa5252AY.440.000317
S19T19IaCaaTa5051B.10.000458
S19T19IaCAaTC151B.10.000009
S19T19IaCaaTa5050B.1.617.20.000188
S19T19IaCaaTa4949B.1.20.000431
S19T19IaCaaTa4848B.1.4290.001129
S19T19RaCaaGa4747B.1.20.000414
S19T19RaCaaGa4646B.1.5960.004008
S19T19IaCaaTa4444B.1.6280.015504
S19T19RaCaaGa4343B.1.1.4110.632353
S19T19AAcaGca4343B.1.1.70.000038
S19T19IaCaaTa3939B.1.5260.000917
S19T19IaCaaTa3737B.1.2430.002575
S19T19IaCaaTa3232B.1.1770.000421
S19T19RaCaaGa3232P.1.120.015489
S19T19IaCaaTa3031AY.250.00018
S19T19IaCAaTT131AY.250.000006
S19T19IaCaaTa3131B.1.177.350.021424
S19T19IaCaaTa3030AY.980.00237
S19T19RaCaaGa3030B.1.2140.10989
S19T19IaCaaTa3030B.1.36.310.052539
S19T19RaCaaGa3030B.1.617.10.003869
S19T19IaCaaTa3030P.1.140.001434
S19T19KaCaaAa2828B.1.1600.000873
S19T19IaCaaTa2727B.1.1.2140.001497
S19T19KaCaaAa2727C.370.003134
S19T19IaCaaTa2626B.1.10.000472
S19T19IaCaaTa2424AY.260.000679
S19T19IaCaaTa2323B.1.1.2970.051454
S19T19IaCaaTa2222AY.46.60.001589
S19T19IaCaaTa2222B.1.5250.00249
S19T19KaCaaAa2121P.1.70.006705
S19T19KaCaaAa2020AY.40.000031
S19T19KaCaaAa2020B.1.1.70.000018
S19T19delACA---2020B.1.1.70.000018
S19T19IaCaaTa1919B.1.1.370.003664
S19T19IaCaaTa1818AY.990.018888
S19T19AAcaGca1818B.1.1.2630.028037
S19T19IaCaaTa1818B.1.1.5190.000715
S19T19KaCaaAa1717AA.10.123188
S19T19IaCaaTa1717AY.1060.005693
S19T19delACA---1717AY.40.000026
S19T19SaCAaGC1717AY.98.10.000823
S19T19TacAacT917B.1.1.70.000008
S19T19TacAacG717B.1.1.70.000006
S19T19TacAacC117B.1.1.70.000001
S19T19RaCaaGa1616B.1.5760.014506
S19T19IaCaaTa1515AY.1190.00053
S19T19IaCaaTa1515AY.50.00031
S19T19TacAacG1515P.20.0028
S19T19IaCaaTa1414AY.9.20.000514
S19T19KaCaaAa1313AY.430.000058
S19T19RaCaaGa1313B.1.3510.000386
S19T19RaCaaGa1313B.1.5950.003392
S19T19del1aCaa-a712All0.000001
S19T19del1acAac-512All0.000001
S19T19IaCaaTa1212AY.1110.002198
S19T19IaCaaTa1212AY.4.20.00026
S19T19RaCaaGa1212P.10.000189
S19T19IaCaaTa1212Q.10.001516
S19T19KaCaaAa1111AY.1030.000068
S19T19IaCaaTa1111AY.90.000744
S19T19RaCaaGa1111B.1.177.730.006229
S19T19IaCaaTa1010AY.30.000099
S19T19IaCaaTa1010AY.410.002939
S19T19IaCaaTa1010AY.420.000402
S19T19IaCaaTa1010B.1.177.810.001893
S19T19AAcaGca1010B.1.2580.000665
S19T19IaCaaTa1010B.1.4270.000505
S19T19RaCaaGa1010B.1.5250.001132
S19T19RaCaaGa1010B.1.6280.003524
S19T19IaCaaTa1010B.1.6370.000731
S19T19GACaGGa99AY.250.000054
S19T19KaCaaAa99B.1.617.20.000034
S19T19LACaCTa280.111111
S19T19LACaTTa280.111111
S19T19LACACTG280.111111
S19T19LACATTG280.111111
S19T19IaCaaTa88A.2.50.003992
S19T19PAcaCca78All0.000001
S19T19LACACTG28All0
S19T19LACATTG28All0
S19T19LACaTTa28All0
S19T19LACaCTa28All0
S19T19PAcACcC18All0
S19T19SaCAaGT68AY.250.000036
S19T19SaCAaGC28AY.250.000012
S19T19delACA---88AY.330.000534
S19T19IaCaaTa88AY.390.000198
S19T19KaCaaAa88AY.980.000632
S19T19IaCaaTa88AY.98.10.000387
S19T19RaCaaGa88B.1.1770.000105
S19T19SAcaTca88B.1.2430.000557
S19T19GACaGGa88B.1.617.20.00003
S19T19RaCaaGa88B.1.6210.000708
S19T19IaCaaTa88P.1.10.002541
S19T19GACaGGa77AY.1030.000043
S19T19SaCAaGC77AY.40.000011
S19T19delACA---77AY.440.000043
S19T19delACA---77AY.590.003708
S19T19AAcaGca77B.10.000064
S19T19delACA---77B.1.10.000127
S19T19IaCaaTa77B.1.1.3010.008255
S19T19KaCaaAa77B.1.20.000062
S19T19delACA---77B.1.617.20.000026
S19T19SaCAaGT47B.1.617.20.000015
S19T19SaCAaGC37B.1.617.20.000011
S19T19IaCaaTa66AY.1020.000159
S19T19delACA---66AY.1030.000037
S19T19IaCaaTa66AY.330.000401
S19T19SaCAaGT36AY.430.000013
S19T19SaCAaGC36AY.430.000013
S19T19KaCaaAa66AY.440.000037
S19T19IaCaaTa66AY.99.20.000553
S19T19KaCaaAa66B.1.1770.000079
S19T19TacAacT66B.1.1770.000079
S19T19TacAacT66B.1.177.440.003114
S19T19TacAacT66B.1.20.000053
S19T19RaCaaGa66B.1.3690.001711
S19T19RaCaaGa66B.1.4740.011407
S19T19RaCaaGa66B.1.6230.003219
S19T19TacAacT46P.10.000063
S19T19TacAacG26P.10.000032
S19T19RaCaaGa66P.1.10.001906
S19T19RaCaaGa66P.1.170.000971
S19T19XACATAG25All0
S19T19XACaTAa25All0
S19T19XACaTGa15All0
S19T19GACaGGa55AY.430.000022
S19T19IaCaaTa55AY.75.10.000902
S19T19RaCaaGa55B.1.1.3170.002058
S19T19PAcaCca55B.1.1.70.000004
S19T19IaCaaTa55B.1.1600.000156
S19T19RaCaaGa55B.1.1600.000156
S19T19RaCaaGa55B.1.3750.004098
S19T19KaCaaAa55B.1.5260.000118
S19T19IaCaaTa55D.20.000375
S19T19IaCaaTa55Q.40.002274
S19T19QACaCAa240.111111
S19T19QACACAG240.111111
S19T19XACaTAa240.111111
S19T19XACATAG240.111111
S19T19RaCaaGa44A0.001548
S19T19QACaCAa24All0
S19T19QACACAG24All0
S19T19delACA---44AY.1200.000149
S19T19KaCaaAa44AY.200.000155
S19T19KaCaaAa44AY.30.00004
S19T19SaCAaGC44AY.30.00004
S19T19delACA---44AY.390.000099
S19T19delACA---44AY.430.000018
S19T19IaCaaTa44AY.450.000487
S19T19IaCaaTa44AY.460.000416
S19T19IaCaaTa44AY.470.000124
S19T19IaCaaTa44AY.70.000784
S19T19delACA---44AY.750.000224
S19T19KaCaaAa44B.10.000037
S19T19TacAacG24B.10.000018
S19T19TacAacT24B.10.000018
S19T19RaCaaGa44B.1.1570.01194
S19T19AAcaGca44B.1.1600.000125
S19T19AAcaGca44B.1.1770.000053
S19T19IaCaaTa44B.1.177.440.002076
S19T19IaCaaTa44B.1.177.540.002426
S19T19SAcaTca44B.1.20.000035
S19T19IaCaaTa44B.1.2210.000284
S19T19IaCaaTa44B.1.2320.002149
S19T19IaCaaTa44B.1.3130.026316
S19T19TacAacT44B.1.3510.000119
S19T19RaCaaGa44B.1.360.000584
S19T19delACA---44B.1.5250.000453
S19T19IaCaaTa44C.360.003643
S19T19RaCaaGa44C.37.10.010471
S19T19RaCaaGa330.166667
S19T19RaCaaGa33AU.30.006329
S19T19IaCaaTa33AY.1000.000138
S19T19SaCAaGT33AY.1130.000427
S19T19IaCaaTa33AY.1170.000254
S19T19GACaGGa33AY.1190.000106
S19T19GACaGGa33AY.290.000047
S19T19delACA---33AY.30.00003
S19T19SaCAaGT23AY.440.000012
S19T19SaCAaGC13AY.440.000006
S19T19IaCaaTa33AY.5.30.001012
S19T19IaCaaTa33AY.60.000123
S19T19SaCAaGT33AY.60.000123
S19T19SaCAaGT33AY.7.10.000338
S19T19delACA---33AY.75.10.000541
S19T19delACA---33AY.980.000237
S19T19KaCaaAa33B.1.10.000054
S19T19TacAacG13B.1.10.000018
S19T19TacAacT13B.1.10.000018
S19T19TacAacC13B.1.10.000018
S19T19RaCaaGa33B.1.1.1610.010601
S19T19IaCaaTa33B.1.1.1700.003741
S19T19IaCaaTa33B.1.1.2220.000612
S19T19RaCaaGa33B.1.1.2940.003797
S19T19RaCaaGa33B.1.1.4320.003797
S19T19RaCaaGa33B.1.1.5230.004687
S19T19del1acAac-33B.1.1.70.000003
S19T19IaCaaTa33B.1.177.570.000843
S19T19IaCaaTa33B.1.2400.000647
S19T19RaCaaGa33B.1.2430.000209
S19T19IaCaaTa33B.1.2580.0002
S19T19RaCaaGa33B.1.3490.002144
S19T19RaCaaGa33B.1.5800.012195
S19T19RaCaaGa33B.1.6040.051724
S19T19IaCaaTa33B.1.6210.000266
S19T19KaCaaAa33B.1.930.002801
S19T19IaCaaTa33C.370.000348
S19T19delACA---33P.10.000047
S19T19RaCaaGa33P.1.130.002695
S19T19IaCaaTa33P.1.150.000697
S19T19IaCaaTa33P.1.20.003468
S19T19RaCaaGa33P.1.70.000958
S19T19IaCaaTa33Q.80.000495
S19T19IaCaaTa22A0.000774
S19T19IaCaaTa22A.2.5.20.003145
S19T19del2aCAa--22All0
S19T19GACaGGa22AY.1010.000981
S19T19IaCaaTa22AY.1090.001479
S19T19IaCaaTa22AY.1180.000125
S19T19IaCaaTa22AY.1210.000271
S19T19GACaGGa22AY.200.000078
S19T19GACaGGa22AY.230.000139
S19T19delACA---22AY.250.000012
S19T19IaCaaTa22AY.270.000129
S19T19GACaGGa22AY.30.00002
S19T19GACaGGa22AY.390.000049
S19T19SaCAaGC12AY.390.000025
S19T19SaCAaGT12AY.390.000025
S19T19SaCAaGT22AY.4.20.000043
S19T19KaCaaAa22AY.420.00008
S19T19SaCAaGT22AY.470.000062
S19T19IaCaaTa22AY.540.000191
S19T19KaCaaAa22AY.560.00321
S19T19IaCaaTa22AY.580.001815
S19T19KaCaaAa22AY.60.000082
S19T19IaCaaTa22AY.610.00021
S19T19IaCaaTa22AY.7.10.000225
S19T19IaCaaTa22AY.720.002721
S19T19IaCaaTa22AY.750.000112
S19T19IaCaaTa22AY.850.000854
S19T19IaCaaTa22AY.870.001665
S19T19IaCaaTa22AY.940.000885
S19T19del1aCaa-a22B.10.000018
S19T19delACA---22B.10.000018
S19T19SAcaTca22B.10.000018
S19T19PAcaCca12B.1.10.000018
S19T19PAcACcC12B.1.10.000018
S19T19IaCaaTa22B.1.1.3690.000892
S19T19TacAacT22B.1.1.4320.002532
S19T19IaCaaTa22B.1.1.5180.012658
S19T19TacAacT22B.1.1.5260.007092
S19T19RaCaaGa22B.1.1430.042553
S19T19RaCaaGa22B.1.1700.008621
S19T19IaCaaTa22B.1.177.170.001642
S19T19TacAacG22B.1.177.230.006472
S19T19AAcaGca22B.1.177.800.003824
S19T19IaCaaTa22B.1.2410.001623
S19T19AAcaGca22B.1.2430.000139
S19T19IaCaaTa22B.1.258.170.000208
S19T19IaCaaTa22B.1.3110.000549
S19T19IaCaaTa22B.1.3200.002491
S19T19RaCaaGa22B.1.3350.020619
S19T19IaCaaTa22B.1.360.000292
S19T19IaCaaTa22B.1.36.290.001035
S19T19RaCaaGa22B.1.36.290.001035
S19T19SAcaTca22B.1.4290.000047
S19T19RaCaaGa22B.1.4290.000047
S19T19delACA---22B.1.4290.000047
S19T19KaCaaAa22B.1.4290.000047
S19T19RaCaaGa22B.1.4320.022472
S19T19RaCaaGa22B.1.4330.00639
S19T19IaCaaTa22B.1.4660.046512
S19T19TacAacT22B.1.4800.004975
S19T19RaCaaGa22B.1.4850.029851
S19T19RaCaaGa22B.1.5260.000047
S19T19TacAacT12B.1.5260.000024
S19T19TacAacC12B.1.5260.000024
S19T19RaCaaGa22B.1.5300.014286
S19T19AAcaGca22B.1.5680.002222
S19T19TacAacG22B.1.5940.0625
S19T19KaCaaAa22B.1.5950.000522
S19T19del1aCaa-a22B.1.617.10.000258
S19T19RaCaaGa22B.1.6190.001742
S19T19IaCaaTa22B.1.6200.001892
S19T19RaCaaGa22B.1.6290.026667
S19T19RaCaaGa22B.1.6370.000146
S19T19AAcaGca22B.1.6380.105263
S19T19IaCaaTa22B.1.80.003945
S19T19IaCaaTa22B.1.840.041667
S19T19RaCaaGa22B.550.0059
S19T19RaCaaGa22C.36.3.10.005435
S19T19RaCaaGa22C.370.000232
S19T19RaCaaGa22P.1.100.000539
S19T19IaCaaTa22P.1.70.000639
S19T19RaCaaGa22P.20.000373
S19T19IaCaaTa22Q.20.001227
S19T19SAcaTca11A0.000387
S19T19RaCaaGa11A.20.000662
S19T19delACA---11A.2.40.003367
S19T19RaCaaGa11A.2.50.000499
S19T19AAcaGca11A.23.10.000704
S19T19IaCaaTa11A.30.002096
S19T19RaCaaGa11AT.10.005128
S19T19IaCaaTa11AU.30.00211
S19T19IaCaaTa11AY.10.000396
S19T19delACA---11AY.1000.000046
S19T19delACA---11AY.1010.00049
S19T19GACaGGa11AY.1020.000027
S19T19KaCaaAa11AY.1020.000027
S19T19SaCAaGC11AY.1030.000006
S19T19KaCaaAa11AY.1110.000183
S19T19GACaGGa11AY.1130.000142
S19T19IaCaaTa11AY.1130.000142
S19T19KaCaaAa11AY.1140.000231
S19T19IaCaaTa11AY.1140.000231
S19T19KaCaaAa11AY.1160.000287
S19T19IaCaaTa11AY.1160.000287
S19T19delACA---11AY.116.10.000311
S19T19delACA---11AY.1170.000085
S19T19SaCAaGC11AY.1170.000085
S19T19KaCaaAa11AY.1170.000085
S19T19KaCaaAa11AY.1190.000035
S19T19IaCaaTa11AY.1200.000037
S19T19KaCaaAa11AY.120.10.000321
S19T19IaCaaTa11AY.120.10.000321
S19T19GACaGGa11AY.130.000161
S19T19delACA---11AY.200.000039
S19T19IaCaaTa11AY.240.000431
S19T19KaCaaAa11AY.250.000006
S19T19IaCaaTa11AY.280.00189
S19T19delACA---11AY.290.000016
S19T19IaCaaTa11AY.290.000016
S19T19delACA---11AY.320.000532
S19T19IaCaaTa11AY.340.000097
S19T19IaCaaTa11AY.360.000148
S19T19IaCaaTa11AY.380.000499
S19T19IaCaaTa11AY.39.10.00004
S19T19delACA---11AY.39.10.00004
S19T19delACA---11AY.420.00004
S19T19GACaGGa11AY.450.000122
S19T19delACA---11AY.460.000104
S19T19GACaGGa11AY.46.40.000165
S19T19KaCaaAa11AY.470.000031
S19T19delACA---11AY.470.000031
S19T19GACaGGa11AY.470.000031
S19T19SaCAaGT11AY.480.000465
S19T19delACA---11AY.50.000021
S19T19KaCaaAa11AY.50.000021
S19T19GACaGGa11AY.50.000021
S19T19GACaGGa11AY.5.30.000337
S19T19KaCaaAa11AY.5.30.000337
S19T19IaCaaTa11AY.520.000814
S19T19del2aCAa--11AY.540.000095
S19T19IaCaaTa11AY.590.00053
S19T19delACA---11AY.60.000041
S19T19KaCaaAa11AY.610.000105
S19T19delACA---11AY.610.000105
S19T19IaCaaTa11AY.640.000595
S19T19KaCaaAa11AY.670.000464
S19T19IaCaaTa11AY.680.000274
S19T19delACA---11AY.680.000274
S19T19IaCaaTa11AY.690.000187
S19T19IaCaaTa11AY.700.000209
S19T19IaCaaTa11AY.740.000116
S19T19IaCaaTa11AY.760.004831
S19T19delACA---11AY.780.001541
S19T19GACaGGa11AY.790.001211
S19T19KaCaaAa11AY.850.000427
S19T19GACaGGa11AY.90.000068
S19T19IaCaaTa11AY.9.10.000084
S19T19GACaGGa11AY.9.20.000037
S19T19IaCaaTa11AY.910.00073
S19T19SaCAaGT11AY.940.000443
S19T19IaCaaTa11AY.99.10.001553
S19T19IaCaaTa11AZ.20.000821
S19T19IaCaaTa11B0.000128
S19T19AAcaGca11B0.000128
S19T19RaCaaGa11B.1.1.1210.002427
S19T19IaCaaTa11B.1.1.250.000569
S19T19RaCaaGa11B.1.1.2540.011236
S19T19IaCaaTa11B.1.1.2770.000759
S19T19IaCaaTa11B.1.1.280.000311
S19T19RaCaaGa11B.1.1.280.000311
S19T19RaCaaGa11B.1.1.2910.000742
S19T19delACA---11B.1.1.3060.000438
S19T19IaCaaTa11B.1.1.3110.000358
S19T19AAcaGca11B.1.1.3110.000358
S19T19delACA---11B.1.1.3150.008475
S19T19RaCaaGa11B.1.1.3260.001761
S19T19IaCaaTa11B.1.1.3290.003846
S19T19IaCaaTa11B.1.1.330.000421
S19T19TacAacG11B.1.1.3560.008547
S19T19delACA---11B.1.1.4010.066667
S19T19IaCaaTa11B.1.1.4160.000905
S19T19TacAacT11B.1.1.4370.010417
S19T19delACA---11B.1.1.460.004367
S19T19KaCaaAa11B.1.1.4620.008621
S19T19IaCaaTa11B.1.1.4640.001473
S19T19RaCaaGa11B.1.1.5120.028571
S19T19RaCaaGa11B.1.1.5190.00004
S19T19TacAacG11B.1.1.5230.001563
S19T19RaCaaGa11B.1.1.5260.003546
S19T19TacAacG11B.1.1.630.000386
S19T19IaCaaTa11B.1.1.630.000386
S19T19delACA---11B.1.1.700.000341
S19T19AAcaGca11B.1.1040.00369
S19T19RaCaaGa11B.1.110.30.000718
S19T19delACA---11B.1.110.30.000718
S19T19IaCaaTa11B.1.1280.000635
S19T19RaCaaGa11B.1.1310.008772
S19T19RaCaaGa11B.1.1420.002899
S19T19TacAacG11B.1.1470.000756
S19T19RaCaaGa11B.1.160.160.000929
S19T19AAcaGca11B.1.160.200.008929
S19T19SAcaTca11B.1.1770.000013
S19T19IaCaaTa11B.1.177.100.000878
S19T19IaCaaTa11B.1.177.150.000631
S19T19IaCaaTa11B.1.177.330.001645
S19T19IaCaaTa11B.1.177.40.000211
S19T19delACA---11B.1.177.60.000977
S19T19IaCaaTa11B.1.177.60.000977
S19T19IaCaaTa11B.1.177.600.000218
S19T19delACA---11B.1.177.680.015152
S19T19AAcaGca11B.1.177.70.000165
S19T19KaCaaAa11B.1.177.70.000165
S19T19IaCaaTa11B.1.177.730.000566
S19T19delACA---11B.1.177.830.001481
S19T19IaCaaTa11B.1.177.870.000728
S19T19RaCaaGa11B.1.1790.003759
S19T19del1acAac-11B.1.20.000009
S19T19delACA---11B.1.20.000009
S19T19IaCaaTa11B.1.2060.000816
S19T19KaCaaAa11B.1.2210.000071
S19T19delACA---11B.1.2210.000071
S19T19AAcaGca11B.1.2210.000071
S19T19RaCaaGa11B.1.2210.000071
S19T19TacAacG11B.1.2340.000132
S19T19IaCaaTa11B.1.243.20.014493
S19T19RaCaaGa11B.1.2470.014925
S19T19TacAacT11B.1.2580.000067
S19T19RaCaaGa11B.1.2580.000067
S19T19SAcaTca11B.1.2580.000067
S19T19IaCaaTa11B.1.258.160.001637
S19T19IaCaaTa11B.1.258.30.001675
S19T19RaCaaGa11B.1.3010.005917
S19T19RaCaaGa11B.1.3250.006897
S19T19IaCaaTa11B.1.3360.002439
S19T19IaCaaTa11B.1.3490.000715
S19T19delACA---11B.1.3510.00003
S19T19IaCaaTa11B.1.351.30.000876
S19T19IaCaaTa11B.1.351.50.0006
S19T19RaCaaGa11B.1.3550.011111
S19T19del1aCaa-a11B.1.360.000146
S19T19delACA---11B.1.360.000146
S19T19IaCaaTa11B.1.36.160.001425
S19T19KaCaaAa11B.1.36.180.00042
S19T19IaCaaTa11B.1.36.240.006173
S19T19del1aCaa-a11B.1.36.290.000517
S19T19IaCaaTa11B.1.36.380.001642
S19T19RaCaaGa11B.1.3660.004878
S19T19RaCaaGa11B.1.3670.000792
S19T19RaCaaGa11B.1.3800.006623
S19T19IaCaaTa11B.1.3930.028571
S19T19RaCaaGa11B.1.3970.004854
S19T19SAcaTca11B.1.4270.00005
S19T19RaCaaGa11B.1.4270.00005
S19T19delACA---11B.1.4270.00005
S19T19TacAacG11B.1.4290.000024
S19T19RaCaaGa11B.1.4360.001029
S19T19AAcaGca11B.1.438.10.000107
S19T19IaCaaTa11B.1.4390.005917
S19T19RaCaaGa11B.1.4590.004082
S19T19RaCaaGa11B.1.4620.007246
S19T19RaCaaGa11B.1.466.20.000391
S19T19TacAacT11B.1.466.20.000391
S19T19delACA---11B.1.4970.000315
S19T19RaCaaGa11B.1.4970.000315
S19T19SAcaTca11B.1.5250.000113
S19T19del1acAac-11B.1.5250.000113
S19T19delACA---11B.1.5260.000024
S19T19RaCaaGa11B.1.5380.008065
S19T19RaCaaGa11B.1.5640.000426
S19T19IaCaaTa11B.1.5650.00081
S19T19RaCaaGa11B.1.5710.009709
S19T19RaCaaGa11B.1.5730.006098
S19T19IaCaaTa11B.1.5750.000303
S19T19TacAacT11B.1.5750.000303
S19T19RaCaaGa11B.1.575.20.004808
S19T19RaCaaGa11B.1.5810.009434
S19T19IaCaaTa11B.1.5820.000491
S19T19IaCaaTa11B.1.5890.007576
S19T19IaCaaTa11B.1.5950.000261
S19T19TacAacT11B.1.5960.000087
S19T19RaCaaGa11B.1.6090.000479
S19T19XACaTGa11B.1.617.20.000004
S19T19del1aCaa-a11B.1.617.20.000004
S19T19RaCaaGa11B.1.6200.000946
S19T19delACA---11B.1.6200.000946
S19T19TacAacG11B.1.6210.000089
S19T19KaCaaAa11B.1.6210.000089
S19T19AAcaGca11B.1.6210.000089
S19T19RaCaaGa11B.1.621.10.000506
S19T19RaCaaGa11B.1.6300.005236
S19T19RaCaaGa11B.1.6310.003367
S19T19AAcaGca11B.1.6370.000073
S19T19RaCaaGa11B.1.700.02439
S19T19RaCaaGa11B.1.810.021277
S19T19IaCaaTa11B.1.90.006173
S19T19AAcaGca11B.1.9.50.005682
S19T19PAcaCca11B.400.000364
S19T19RaCaaGa11B.400.000364
S19T19IaCaaTa11B.400.000364
S19T19KaCaaAa11B.570.015152
S19T19del2aCAa--11B.610.005747
S19T19KaCaaAa11C.1.20.004255
S19T19IaCaaTa11C.140.004329
S19T19KaCaaAa11C.160.00106
S19T19IaCaaTa11C.160.00106
S19T19KaCaaAa11C.36.10.004149
S19T19RaCaaGa11C.36.30.000567
S19T19delACA---11C.36.30.000567
S19T19SAcaTca11C.370.000116
S19T19AAcaGca11C.370.000116
S19T19IaCaaTa11C.37.10.002618
S19T19AAcaGca11P.10.000016
S19T19IaCaaTa11P.1.100.000269
S19T19RaCaaGa11P.1.10.10.00813
S19T19IaCaaTa11P.1.120.000484
S19T19RaCaaGa11P.1.160.000374
S19T19IaCaaTa11P.20.000187
S19T19IaCaaTa11P.30.001595
S19T19AAcaGca11Q.80.000165
S19T19TacAacT11Q.80.000165
S19T19TacAacT11R.10.00009
S19T19IaCaaTa11W.30.005263
S19T19IaCaaTa11XA0.022222

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.