CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 19 | T19R | nonsyn | aCa | aGa | 2719109 | 2719065 | 0.999984 | 21617-21619 | |
S | 19 | T19R | nonsyn | aCA | aGG | 2719109 | 35 | 0.0000128719 | 21617-21619 | |
S | 19 | T19R | nonsyn | ACa | CGa | 2719109 | 9 | 0.00000330991 | 21617-21619 | |
S | 19 | T19I | nonsyn | aCa | aTa | 3851 | 3848 | 0.999221 | 21617-21619 | |
S | 19 | T19I | nonsyn | aCA | aTT | 3851 | 2 | 0.000519346 | 21617-21619 | |
S | 19 | T19I | nonsyn | aCA | aTC | 3851 | 1 | 0.000259673 | 21617-21619 | |
S | 19 | T19K | nonsyn | aCa | aAa | 371 | 371 | 1 | 21617-21619 | |
S | 19 | T19del | del | ACA | --- | 152 | 152 | 1 | 21617-21619 | |
S | 19 | T19G | nonsyn | ACa | GGa | 135 | 135 | 1 | 21617-21619 | |
S | 19 | T19A | nonsyn | Aca | Gca | 108 | 108 | 1 | 21617-21619 | |
S | 19 | T19T | syn | acA | acT | 93 | 52 | 0.55914 | 21617-21619 | |
S | 19 | T19S | nonsyn | aCA | aGC | 93 | 40 | 0.430108 | 21617-21619 | |
S | 19 | T19T | syn | acA | acG | 93 | 38 | 0.408602 | 21617-21619 | |
S | 19 | T19S | nonsyn | aCA | aGT | 93 | 31 | 0.333333 | 21617-21619 | |
S | 19 | T19S | nonsyn | Aca | Tca | 93 | 22 | 0.236559 | 21617-21619 | |
S | 19 | T19T | syn | acA | acC | 93 | 3 | 0.0322581 | 21617-21619 | |
S | 19 | T19del1 | del | aCa | a-a | 12 | 7 | 0.583333 | 21617-21619 | |
S | 19 | T19del1 | del | acA | ac- | 12 | 5 | 0.416667 | 21617-21619 | |
S | 19 | T19P | nonsyn | Aca | Cca | 8 | 7 | 0.875 | 21617-21619 | |
S | 19 | T19L | nonsyn | ACa | CTa | 8 | 2 | 0.25 | 21617-21619 | |
S | 19 | T19L | nonsyn | ACA | CTG | 8 | 2 | 0.25 | 21617-21619 | |
S | 19 | T19L | nonsyn | ACa | TTa | 8 | 2 | 0.25 | 21617-21619 | |
S | 19 | T19L | nonsyn | ACA | TTG | 8 | 2 | 0.25 | 21617-21619 | |
S | 19 | T19P | nonsyn | AcA | CcC | 8 | 1 | 0.125 | 21617-21619 | |
S | 19 | T19X | nonsyn | ACa | TAa | 5 | 2 | 0.4 | 21617-21619 | |
S | 19 | T19X | nonsyn | ACA | TAG | 5 | 2 | 0.4 | 21617-21619 | |
S | 19 | T19X | nonsyn | ACa | TGa | 5 | 1 | 0.2 | 21617-21619 | |
S | 19 | T19Q | nonsyn | ACA | CAG | 4 | 2 | 0.5 | 21617-21619 | |
S | 19 | T19Q | nonsyn | ACa | CAa | 4 | 2 | 0.5 | 21617-21619 | |
S | 19 | T19del2 | del | aCA | a-- | 2 | 2 | 1 | 21617-21619 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 19 | T19R | aCa | aGa | 2719065 | 2719109 | All | 0.520053 |
S | 19 | T19R | aCA | aGG | 35 | 2719109 | All | 0.000007 |
S | 19 | T19R | ACa | CGa | 9 | 2719109 | All | 0.000002 |
S | 19 | T19R | aCa | aGa | 642163 | 642170 | AY.4 | 0.999477 |
S | 19 | T19R | aCA | aGG | 4 | 642170 | AY.4 | 0.000006 |
S | 19 | T19R | ACa | CGa | 3 | 642170 | AY.4 | 0.000005 |
S | 19 | T19R | aCa | aGa | 262667 | 262676 | B.1.617.2 | 0.98905 |
S | 19 | T19R | aCA | aGG | 9 | 262676 | B.1.617.2 | 0.000034 |
S | 19 | T19R | aCa | aGa | 222270 | 222272 | AY.43 | 0.984759 |
S | 19 | T19R | aCA | aGG | 2 | 222272 | AY.43 | 0.000009 |
S | 19 | T19R | aCa | aGa | 163799 | 163804 | AY.25 | 0.985222 |
S | 19 | T19R | aCA | aGG | 5 | 163804 | AY.25 | 0.00003 |
S | 19 | T19R | aCa | aGa | 160091 | 160092 | AY.44 | 0.974436 |
S | 19 | T19R | aCA | aGG | 1 | 160092 | AY.44 | 0.000006 |
S | 19 | T19R | aCa | aGa | 158409 | 158411 | AY.103 | 0.983571 |
S | 19 | T19R | ACa | CGa | 1 | 158411 | AY.103 | 0.000006 |
S | 19 | T19R | aCA | aGG | 1 | 158411 | AY.103 | 0.000006 |
S | 19 | T19R | aCa | aGa | 99158 | 99158 | AY.3 | 0.986264 |
S | 19 | T19R | aCa | aGa | 63320 | 63320 | AY.29 | 0.998785 |
S | 19 | T19R | aCa | aGa | 47969 | 47969 | AY.5 | 0.990522 |
S | 19 | T19R | aCa | aGa | 46058 | 46058 | AY.4.2 | 0.998937 |
S | 19 | T19R | aCa | aGa | 37716 | 37716 | AY.39 | 0.932019 |
S | 19 | T19R | aCa | aGa | 37518 | 37518 | AY.102 | 0.99475 |
S | 19 | T19R | aCa | aGa | 34792 | 34792 | AY.26 | 0.984967 |
S | 19 | T19R | aCa | aGa | 31754 | 31754 | AY.47 | 0.987713 |
S | 19 | T19R | aCa | aGa | 27882 | 27882 | AY.119 | 0.984464 |
S | 19 | T19R | aCa | aGa | 26776 | 26776 | AY.120 | 0.995501 |
S | 19 | T19R | aCa | aGa | 26731 | 26731 | AY.9.2 | 0.981819 |
S | 19 | T19R | aCa | aGa | 25345 | 25345 | AY.20 | 0.985037 |
S | 19 | T19R | aCa | aGa | 24760 | 24760 | AY.39.1 | 0.980827 |
S | 19 | T19R | aCa | aGa | 24207 | 24207 | AY.6 | 0.995599 |
S | 19 | T19R | aCa | aGa | 23560 | 23561 | AY.42 | 0.947822 |
S | 19 | T19R | aCA | aGG | 1 | 23561 | AY.42 | 0.00004 |
S | 19 | T19R | aCa | aGa | 21277 | 21277 | AY.100 | 0.978883 |
S | 19 | T19R | aCa | aGa | 20391 | 20392 | AY.98.1 | 0.987553 |
S | 19 | T19R | aCA | aGG | 1 | 20392 | AY.98.1 | 0.000048 |
S | 19 | T19R | aCa | aGa | 16936 | 16936 | AY.75 | 0.948796 |
S | 19 | T19R | aCa | aGa | 15705 | 15705 | AY.118 | 0.983899 |
S | 19 | T19R | aCa | aGa | 15440 | 15440 | AY.27 | 0.999288 |
S | 19 | T19R | aCa | aGa | 14721 | 14721 | AY.9 | 0.995066 |
S | 19 | T19R | aCa | aGa | 14702 | 14702 | AY.33 | 0.98177 |
S | 19 | T19R | aCa | aGa | 13785 | 13785 | AY.23 | 0.961498 |
S | 19 | T19R | aCa | aGa | 13635 | 13635 | AY.46.6 | 0.984548 |
S | 19 | T19R | aCa | aGa | 11850 | 11850 | AY.9.1 | 0.99213 |
S | 19 | T19R | aCa | aGa | 11734 | 11735 | AY.98 | 0.926929 |
S | 19 | T19R | aCA | aGG | 1 | 11735 | AY.98 | 0.000079 |
S | 19 | T19R | aCa | aGa | 11611 | 11616 | AY.3.1 | 0.989939 |
S | 19 | T19R | aCA | aGG | 5 | 11616 | AY.3.1 | 0.000426 |
S | 19 | T19R | aCa | aGa | 11534 | 11534 | AY.117 | 0.974814 |
S | 19 | T19R | aCa | aGa | 11221 | 11221 | AY.14 | 0.98759 |
S | 19 | T19R | aCa | aGa | 10687 | 10687 | AY.99.2 | 0.984886 |
S | 19 | T19R | aCa | aGa | 10259 | 10263 | AY.54 | 0.978166 |
S | 19 | T19R | ACa | CGa | 4 | 10263 | AY.54 | 0.000381 |
S | 19 | T19R | aCa | aGa | 10230 | 10230 | AY.34 | 0.991952 |
S | 19 | T19R | aCa | aGa | 9415 | 9415 | AY.61 | 0.986484 |
S | 19 | T19R | aCa | aGa | 9317 | 9317 | AY.46 | 0.969713 |
S | 19 | T19R | aCa | aGa | 9171 | 9171 | AY.4.5 | 0.985811 |
S | 19 | T19R | aCa | aGa | 8820 | 8820 | AY.110 | 0.993915 |
S | 19 | T19R | aCa | aGa | 8800 | 8800 | AY.7.1 | 0.991773 |
S | 19 | T19R | aCa | aGa | 8632 | 8632 | AY.74 | 0.998265 |
S | 19 | T19R | aCa | aGa | 7856 | 7856 | AY.45 | 0.95595 |
S | 19 | T19R | aCa | aGa | 7251 | 7251 | AY.121 | 0.981191 |
S | 19 | T19R | aCa | aGa | 6919 | 6919 | AY.113 | 0.985192 |
S | 19 | T19R | aCa | aGa | 6701 | 6701 | AY.4.2.1 | 0.998361 |
S | 19 | T19R | aCa | aGa | 6642 | 6643 | AY.36 | 0.984438 |
S | 19 | T19R | aCA | aGG | 1 | 6643 | AY.36 | 0.000148 |
S | 19 | T19R | aCa | aGa | 6042 | 6042 | AY.13 | 0.972634 |
S | 19 | T19R | aCa | aGa | 6039 | 6039 | AY.46.4 | 0.99342 |
S | 19 | T19R | aCa | aGa | 5405 | 5405 | AY.111 | 0.989927 |
S | 19 | T19R | aCa | aGa | 5342 | 5342 | AY.69 | 0.9972 |
S | 19 | T19R | aCa | aGa | 5153 | 5153 | AY.75.1 | 0.929138 |
S | 19 | T19R | aCa | aGa | 5066 | 5066 | AY.7 | 0.992944 |
S | 19 | T19R | aCa | aGa | 5033 | 5033 | AY.46.5 | 0.998611 |
S | 19 | T19R | aCa | aGa | 4769 | 4769 | AY.70 | 0.99437 |
S | 19 | T19R | aCa | aGa | 4534 | 4534 | AY.29.1 | 0.999779 |
S | 19 | T19R | aCa | aGa | 4244 | 4244 | AY.35 | 0.989047 |
S | 19 | T19R | aCa | aGa | 4237 | 4237 | AY.114 | 0.9792 |
S | 19 | T19I | aCa | aTa | 3848 | 3851 | All | 0.000736 |
S | 19 | T19I | aCA | aTT | 2 | 3851 | All | 0 |
S | 19 | T19I | aCA | aTC | 1 | 3851 | All | 0 |
S | 19 | T19R | aCa | aGa | 3657 | 3657 | AY.93 | 0.998635 |
S | 19 | T19R | aCa | aGa | 3565 | 3565 | AY.5.4 | 0.986442 |
S | 19 | T19R | aCa | aGa | 3436 | 3436 | AY.116 | 0.985374 |
S | 19 | T19R | aCa | aGa | 3423 | 3423 | AY.53 | 0.984186 |
S | 19 | T19R | aCa | aGa | 3405 | 3405 | AY.68 | 0.932111 |
S | 19 | T19R | aCa | aGa | 3362 | 3362 | AY.41 | 0.988242 |
S | 19 | T19R | aCa | aGa | 3171 | 3171 | AY.92 | 0.910945 |
S | 19 | T19R | aCa | aGa | 3148 | 3148 | AY.116.1 | 0.98038 |
S | 19 | T19R | aCa | aGa | 3110 | 3110 | AY.37 | 0.982933 |
S | 19 | T19R | aCa | aGa | 3038 | 3038 | AY.120.1 | 0.975281 |
S | 19 | T19R | aCa | aGa | 2929 | 2929 | AY.106 | 0.980911 |
S | 19 | T19R | aCa | aGa | 2919 | 2919 | AY.12 | 0.922566 |
S | 19 | T19R | aCa | aGa | 2794 | 2794 | AY.5.3 | 0.942645 |
S | 19 | T19R | aCa | aGa | 2761 | 2761 | AY.2 | 0.983262 |
S | 19 | T19R | aCa | aGa | 2581 | 2581 | AY.63 | 0.998453 |
S | 19 | T19R | aCa | aGa | 2547 | 2547 | AY.16 | 0.96697 |
S | 19 | T19R | aCa | aGa | 2466 | 2466 | AY.30 | 0.975861 |
S | 19 | T19R | aCa | aGa | 2464 | 2464 | AY.1 | 0.975069 |
S | 19 | T19R | aCa | aGa | 2425 | 2425 | AY.4.4 | 0.992226 |
S | 19 | T19R | aCa | aGa | 2379 | 2379 | AY.23.1 | 0.992905 |
S | 19 | T19R | aCa | aGa | 2294 | 2294 | AY.85 | 0.979923 |
S | 19 | T19R | aCa | aGa | 2272 | 2272 | AY.24 | 0.97931 |
S | 19 | T19R | aCa | aGa | 2245 | 2245 | AY.62 | 0.978214 |
S | 19 | T19R | aCa | aGa | 2231 | 2231 | AY.94 | 0.987605 |
S | 19 | T19R | aCa | aGa | 2206 | 2206 | AY.84 | 0.965004 |
S | 19 | T19R | aCa | aGa | 2107 | 2107 | AY.48 | 0.98 |
S | 19 | T19R | aCa | aGa | 2104 | 2104 | AY.107 | 0.980429 |
S | 19 | T19R | aCa | aGa | 2089 | 2089 | AY.67 | 0.969824 |
S | 19 | T19R | aCa | aGa | 2089 | 2089 | AY.71 | 0.992399 |
S | 19 | T19R | aCa | aGa | 1995 | 1995 | AY.120.2.1 | 0.994021 |
S | 19 | T19R | aCa | aGa | 1987 | 1987 | AY.101 | 0.974497 |
S | 19 | T19R | aCa | aGa | 1917 | 1917 | AY.38 | 0.957064 |
S | 19 | T19R | aCa | aGa | 1878 | 1878 | AY.10 | 0.995231 |
S | 19 | T19R | aCa | aGa | 1875 | 1875 | AY.34.1 | 0.956145 |
S | 19 | T19R | aCa | aGa | 1867 | 1867 | AY.16.1 | 0.87735 |
S | 19 | T19R | aCa | aGa | 1844 | 1844 | AY.32 | 0.981896 |
S | 19 | T19R | aCa | aGa | 1836 | 1841 | AY.59 | 0.972458 |
S | 19 | T19R | aCA | aGG | 4 | 1841 | AY.59 | 0.002119 |
S | 19 | T19R | ACa | CGa | 1 | 1841 | AY.59 | 0.00053 |
S | 19 | T19R | aCa | aGa | 1770 | 1770 | AY.7.2 | 0.989933 |
S | 19 | T19R | aCa | aGa | 1768 | 1768 | B.1 | 0.016194 |
S | 19 | T19R | aCa | aGa | 1723 | 1723 | AY.65 | 0.918443 |
S | 19 | T19R | aCa | aGa | 1653 | 1653 | AY.64 | 0.983929 |
S | 19 | T19R | aCa | aGa | 1643 | 1643 | AY.8 | 0.995758 |
S | 19 | T19R | aCa | aGa | 1567 | 1567 | AY.46.2 | 0.995553 |
S | 19 | T19R | aCa | aGa | 1544 | 1544 | AY.105 | 0.992926 |
S | 19 | T19R | aCa | aGa | 1517 | 1517 | AY.57 | 0.995407 |
S | 19 | T19R | aCa | aGa | 1478 | 1478 | AY.73 | 0.983367 |
S | 19 | T19R | aCa | aGa | 1455 | 1455 | AY.90 | 0.995893 |
S | 19 | T19R | aCa | aGa | 1379 | 1379 | AY.39.1.1 | 0.999275 |
S | 19 | T19R | aCa | aGa | 1352 | 1352 | AY.4.1 | 0.99705 |
S | 19 | T19R | aCa | aGa | 1319 | 1319 | AY.109 | 0.975592 |
S | 19 | T19R | aCa | aGa | 1308 | 1308 | AY.91 | 0.955442 |
S | 19 | T19R | aCa | aGa | 1252 | 1252 | AY.95 | 0.952816 |
S | 19 | T19R | aCa | aGa | 1245 | 1245 | AY.50 | 0.995204 |
S | 19 | T19R | aCa | aGa | 1190 | 1190 | AY.86 | 0.987552 |
S | 19 | T19R | aCa | aGa | 1189 | 1189 | AY.87 | 0.990008 |
S | 19 | T19I | aCa | aTa | 1174 | 1175 | B.1.1.7 | 0.001051 |
S | 19 | T19I | aCA | aTT | 1 | 1175 | B.1.1.7 | 0.000001 |
S | 19 | T19R | aCa | aGa | 1117 | 1117 | AY.4.3 | 0.940236 |
S | 19 | T19R | aCa | aGa | 1109 | 1109 | AY.88 | 0.980548 |
S | 19 | T19R | aCa | aGa | 1094 | 1094 | AY.51 | 0.994545 |
S | 19 | T19R | aCa | aGa | 1083 | 1083 | AY.58 | 0.982759 |
S | 19 | T19R | aCa | aGa | 1077 | 1077 | AY.55 | 0.988073 |
S | 19 | T19R | aCa | aGa | 1057 | 1057 | AY.46.3 | 0.986928 |
S | 19 | T19R | aCa | aGa | 1049 | 1049 | AY.60 | 0.984053 |
S | 19 | T19I | aCa | aTa | 1043 | 1043 | B.1.351 | 0.031005 |
S | 19 | T19R | aCa | aGa | 987 | 987 | AY.40 | 0.951784 |
S | 19 | T19R | aCa | aGa | 948 | 948 | AY.46.1 | 0.973306 |
S | 19 | T19R | aCa | aGa | 930 | 930 | AY.52 | 0.757329 |
S | 19 | T19R | aCa | aGa | 924 | 924 | AY.66 | 0.988235 |
S | 19 | T19R | aCa | aGa | 908 | 908 | AY.99 | 0.952781 |
S | 19 | T19R | aCa | aGa | 884 | 884 | AY.80 | 0.997743 |
S | 19 | T19R | aCa | aGa | 877 | 877 | AY.108 | 0.966924 |
S | 19 | T19R | aCa | aGa | 870 | 870 | AY.77 | 0.980834 |
S | 19 | T19R | aCa | aGa | 854 | 854 | AY.19 | 0.973774 |
S | 19 | T19R | aCa | aGa | 818 | 818 | AY.79 | 0.990315 |
S | 19 | T19R | aCa | aGa | 744 | 744 | AY.11 | 0.995984 |
S | 19 | T19R | aCa | aGa | 725 | 725 | AY.72 | 0.986395 |
S | 19 | T19R | aCa | aGa | 719 | 719 | AY.82 | 0.975577 |
S | 19 | T19R | aCa | aGa | 668 | 668 | AY.120.2 | 0.858612 |
S | 19 | T19R | aCa | aGa | 644 | 644 | AY.39.2 | 0.992296 |
S | 19 | T19R | aCa | aGa | 637 | 637 | AY.78 | 0.98151 |
S | 19 | T19R | aCa | aGa | 636 | 636 | AY.99.1 | 0.987578 |
S | 19 | T19R | aCa | aGa | 609 | 609 | AY.56 | 0.977528 |
S | 19 | T19R | aCa | aGa | 575 | 575 | AY.97 | 0.977891 |
S | 19 | T19R | aCa | aGa | 572 | 572 | AY.83 | 0.986207 |
S | 19 | T19R | aCa | aGa | 522 | 522 | AY.28 | 0.986767 |
S | 19 | T19R | aCa | aGa | 515 | 515 | AY.21 | 0.97723 |
S | 19 | T19R | aCa | aGa | 506 | 506 | AY.9.2.1 | 1 |
S | 19 | T19R | aCa | aGa | 497 | 497 | AY.104 | 0.986111 |
S | 19 | T19R | aCa | aGa | 490 | 490 | AY.81 | 0.976096 |
S | 19 | T19R | aCa | aGa | 471 | 471 | AY.22 | 0.985356 |
S | 19 | T19R | aCa | aGa | 450 | 450 | AY.15 | 1 |
S | 19 | T19R | aCa | aGa | 436 | 436 | AY.96 | 0.904564 |
S | 19 | T19R | aCa | aGa | 404 | 404 | AY.5.2 | 0.995074 |
S | 19 | T19K | aCa | aAa | 371 | 371 | All | 0.000071 |
S | 19 | T19R | aCa | aGa | 325 | 325 | B.1.617.3 | 0.970149 |
S | 19 | T19R | aCa | aGa | 300 | 300 | AY.49 | 0.958466 |
S | 19 | T19R | aCa | aGa | 266 | 266 | AY.5.1 | 1 |
S | 19 | T19R | aCa | aGa | 246 | 246 | AY.91.1 | 1 |
S | 19 | T19R | aCa | aGa | 206 | 206 | AY.76 | 0.995169 |
S | 19 | T19R | aCa | aGa | 202 | 202 | AY.89 | 0.990196 |
S | 19 | T19R | aCa | aGa | 185 | 185 | AY.115 | 0.963542 |
S | 19 | T19I | aCa | aTa | 156 | 156 | AY.4 | 0.000243 |
S | 19 | T19del | ACA | --- | 152 | 152 | All | 0.000029 |
S | 19 | T19R | aCa | aGa | 141 | 141 | B | 0.018021 |
S | 19 | T19G | ACa | GGa | 135 | 135 | All | 0.000026 |
S | 19 | T19R | aCa | aGa | 122 | 122 | AY.17 | 1 |
S | 19 | T19K | aCa | aAa | 122 | 122 | B.1.177.87 | 0.088792 |
S | 19 | T19A | Aca | Gca | 108 | 108 | All | 0.000021 |
S | 19 | T19R | aCa | aGa | 99 | 99 | AY.18 | 1 |
S | 19 | T19T | acA | acT | 52 | 93 | All | 0.00001 |
S | 19 | T19S | aCA | aGC | 40 | 93 | All | 0.000008 |
S | 19 | T19T | acA | acG | 38 | 93 | All | 0.000007 |
S | 19 | T19S | aCA | aGT | 31 | 93 | All | 0.000006 |
S | 19 | T19S | Aca | Tca | 22 | 93 | All | 0.000004 |
S | 19 | T19T | acA | acC | 3 | 93 | All | 0.000001 |
S | 19 | T19G | ACa | GGa | 79 | 79 | AY.4 | 0.000123 |
S | 19 | T19I | aCa | aTa | 79 | 79 | AY.43 | 0.00035 |
S | 19 | T19I | aCa | aTa | 69 | 69 | AY.103 | 0.000428 |
S | 19 | T19R | aCa | aGa | 62 | 62 | B.1.1.374 | 0.147268 |
S | 19 | T19R | aCa | aGa | 61 | 61 | B.1.1.7 | 0.000055 |
S | 19 | T19R | aCa | aGa | 60 | 60 | B.1.1 | 0.001088 |
S | 19 | T19I | aCa | aTa | 58 | 58 | P.1 | 0.000914 |
S | 19 | T19I | aCa | aTa | 56 | 56 | B.1.635 | 0.982456 |
S | 19 | T19R | aCa | aGa | 54 | 54 | AY.31 | 1 |
S | 19 | T19I | aCa | aTa | 52 | 52 | AY.44 | 0.000317 |
S | 19 | T19I | aCa | aTa | 50 | 51 | B.1 | 0.000458 |
S | 19 | T19I | aCA | aTC | 1 | 51 | B.1 | 0.000009 |
S | 19 | T19I | aCa | aTa | 50 | 50 | B.1.617.2 | 0.000188 |
S | 19 | T19I | aCa | aTa | 49 | 49 | B.1.2 | 0.000431 |
S | 19 | T19I | aCa | aTa | 48 | 48 | B.1.429 | 0.001129 |
S | 19 | T19R | aCa | aGa | 47 | 47 | B.1.2 | 0.000414 |
S | 19 | T19R | aCa | aGa | 46 | 46 | B.1.596 | 0.004008 |
S | 19 | T19I | aCa | aTa | 44 | 44 | B.1.628 | 0.015504 |
S | 19 | T19R | aCa | aGa | 43 | 43 | B.1.1.411 | 0.632353 |
S | 19 | T19A | Aca | Gca | 43 | 43 | B.1.1.7 | 0.000038 |
S | 19 | T19I | aCa | aTa | 39 | 39 | B.1.526 | 0.000917 |
S | 19 | T19I | aCa | aTa | 37 | 37 | B.1.243 | 0.002575 |
S | 19 | T19I | aCa | aTa | 32 | 32 | B.1.177 | 0.000421 |
S | 19 | T19R | aCa | aGa | 32 | 32 | P.1.12 | 0.015489 |
S | 19 | T19I | aCa | aTa | 30 | 31 | AY.25 | 0.00018 |
S | 19 | T19I | aCA | aTT | 1 | 31 | AY.25 | 0.000006 |
S | 19 | T19I | aCa | aTa | 31 | 31 | B.1.177.35 | 0.021424 |
S | 19 | T19I | aCa | aTa | 30 | 30 | AY.98 | 0.00237 |
S | 19 | T19R | aCa | aGa | 30 | 30 | B.1.214 | 0.10989 |
S | 19 | T19I | aCa | aTa | 30 | 30 | B.1.36.31 | 0.052539 |
S | 19 | T19R | aCa | aGa | 30 | 30 | B.1.617.1 | 0.003869 |
S | 19 | T19I | aCa | aTa | 30 | 30 | P.1.14 | 0.001434 |
S | 19 | T19K | aCa | aAa | 28 | 28 | B.1.160 | 0.000873 |
S | 19 | T19I | aCa | aTa | 27 | 27 | B.1.1.214 | 0.001497 |
S | 19 | T19K | aCa | aAa | 27 | 27 | C.37 | 0.003134 |
S | 19 | T19I | aCa | aTa | 26 | 26 | B.1.1 | 0.000472 |
S | 19 | T19I | aCa | aTa | 24 | 24 | AY.26 | 0.000679 |
S | 19 | T19I | aCa | aTa | 23 | 23 | B.1.1.297 | 0.051454 |
S | 19 | T19I | aCa | aTa | 22 | 22 | AY.46.6 | 0.001589 |
S | 19 | T19I | aCa | aTa | 22 | 22 | B.1.525 | 0.00249 |
S | 19 | T19K | aCa | aAa | 21 | 21 | P.1.7 | 0.006705 |
S | 19 | T19K | aCa | aAa | 20 | 20 | AY.4 | 0.000031 |
S | 19 | T19K | aCa | aAa | 20 | 20 | B.1.1.7 | 0.000018 |
S | 19 | T19del | ACA | --- | 20 | 20 | B.1.1.7 | 0.000018 |
S | 19 | T19I | aCa | aTa | 19 | 19 | B.1.1.37 | 0.003664 |
S | 19 | T19I | aCa | aTa | 18 | 18 | AY.99 | 0.018888 |
S | 19 | T19A | Aca | Gca | 18 | 18 | B.1.1.263 | 0.028037 |
S | 19 | T19I | aCa | aTa | 18 | 18 | B.1.1.519 | 0.000715 |
S | 19 | T19K | aCa | aAa | 17 | 17 | AA.1 | 0.123188 |
S | 19 | T19I | aCa | aTa | 17 | 17 | AY.106 | 0.005693 |
S | 19 | T19del | ACA | --- | 17 | 17 | AY.4 | 0.000026 |
S | 19 | T19S | aCA | aGC | 17 | 17 | AY.98.1 | 0.000823 |
S | 19 | T19T | acA | acT | 9 | 17 | B.1.1.7 | 0.000008 |
S | 19 | T19T | acA | acG | 7 | 17 | B.1.1.7 | 0.000006 |
S | 19 | T19T | acA | acC | 1 | 17 | B.1.1.7 | 0.000001 |
S | 19 | T19R | aCa | aGa | 16 | 16 | B.1.576 | 0.014506 |
S | 19 | T19I | aCa | aTa | 15 | 15 | AY.119 | 0.00053 |
S | 19 | T19I | aCa | aTa | 15 | 15 | AY.5 | 0.00031 |
S | 19 | T19T | acA | acG | 15 | 15 | P.2 | 0.0028 |
S | 19 | T19I | aCa | aTa | 14 | 14 | AY.9.2 | 0.000514 |
S | 19 | T19K | aCa | aAa | 13 | 13 | AY.43 | 0.000058 |
S | 19 | T19R | aCa | aGa | 13 | 13 | B.1.351 | 0.000386 |
S | 19 | T19R | aCa | aGa | 13 | 13 | B.1.595 | 0.003392 |
S | 19 | T19del1 | aCa | a-a | 7 | 12 | All | 0.000001 |
S | 19 | T19del1 | acA | ac- | 5 | 12 | All | 0.000001 |
S | 19 | T19I | aCa | aTa | 12 | 12 | AY.111 | 0.002198 |
S | 19 | T19I | aCa | aTa | 12 | 12 | AY.4.2 | 0.00026 |
S | 19 | T19R | aCa | aGa | 12 | 12 | P.1 | 0.000189 |
S | 19 | T19I | aCa | aTa | 12 | 12 | Q.1 | 0.001516 |
S | 19 | T19K | aCa | aAa | 11 | 11 | AY.103 | 0.000068 |
S | 19 | T19I | aCa | aTa | 11 | 11 | AY.9 | 0.000744 |
S | 19 | T19R | aCa | aGa | 11 | 11 | B.1.177.73 | 0.006229 |
S | 19 | T19I | aCa | aTa | 10 | 10 | AY.3 | 0.000099 |
S | 19 | T19I | aCa | aTa | 10 | 10 | AY.41 | 0.002939 |
S | 19 | T19I | aCa | aTa | 10 | 10 | AY.42 | 0.000402 |
S | 19 | T19I | aCa | aTa | 10 | 10 | B.1.177.81 | 0.001893 |
S | 19 | T19A | Aca | Gca | 10 | 10 | B.1.258 | 0.000665 |
S | 19 | T19I | aCa | aTa | 10 | 10 | B.1.427 | 0.000505 |
S | 19 | T19R | aCa | aGa | 10 | 10 | B.1.525 | 0.001132 |
S | 19 | T19R | aCa | aGa | 10 | 10 | B.1.628 | 0.003524 |
S | 19 | T19I | aCa | aTa | 10 | 10 | B.1.637 | 0.000731 |
S | 19 | T19G | ACa | GGa | 9 | 9 | AY.25 | 0.000054 |
S | 19 | T19K | aCa | aAa | 9 | 9 | B.1.617.2 | 0.000034 |
S | 19 | T19L | ACa | CTa | 2 | 8 | 0.111111 | |
S | 19 | T19L | ACa | TTa | 2 | 8 | 0.111111 | |
S | 19 | T19L | ACA | CTG | 2 | 8 | 0.111111 | |
S | 19 | T19L | ACA | TTG | 2 | 8 | 0.111111 | |
S | 19 | T19I | aCa | aTa | 8 | 8 | A.2.5 | 0.003992 |
S | 19 | T19P | Aca | Cca | 7 | 8 | All | 0.000001 |
S | 19 | T19L | ACA | CTG | 2 | 8 | All | 0 |
S | 19 | T19L | ACA | TTG | 2 | 8 | All | 0 |
S | 19 | T19L | ACa | TTa | 2 | 8 | All | 0 |
S | 19 | T19L | ACa | CTa | 2 | 8 | All | 0 |
S | 19 | T19P | AcA | CcC | 1 | 8 | All | 0 |
S | 19 | T19S | aCA | aGT | 6 | 8 | AY.25 | 0.000036 |
S | 19 | T19S | aCA | aGC | 2 | 8 | AY.25 | 0.000012 |
S | 19 | T19del | ACA | --- | 8 | 8 | AY.33 | 0.000534 |
S | 19 | T19I | aCa | aTa | 8 | 8 | AY.39 | 0.000198 |
S | 19 | T19K | aCa | aAa | 8 | 8 | AY.98 | 0.000632 |
S | 19 | T19I | aCa | aTa | 8 | 8 | AY.98.1 | 0.000387 |
S | 19 | T19R | aCa | aGa | 8 | 8 | B.1.177 | 0.000105 |
S | 19 | T19S | Aca | Tca | 8 | 8 | B.1.243 | 0.000557 |
S | 19 | T19G | ACa | GGa | 8 | 8 | B.1.617.2 | 0.00003 |
S | 19 | T19R | aCa | aGa | 8 | 8 | B.1.621 | 0.000708 |
S | 19 | T19I | aCa | aTa | 8 | 8 | P.1.1 | 0.002541 |
S | 19 | T19G | ACa | GGa | 7 | 7 | AY.103 | 0.000043 |
S | 19 | T19S | aCA | aGC | 7 | 7 | AY.4 | 0.000011 |
S | 19 | T19del | ACA | --- | 7 | 7 | AY.44 | 0.000043 |
S | 19 | T19del | ACA | --- | 7 | 7 | AY.59 | 0.003708 |
S | 19 | T19A | Aca | Gca | 7 | 7 | B.1 | 0.000064 |
S | 19 | T19del | ACA | --- | 7 | 7 | B.1.1 | 0.000127 |
S | 19 | T19I | aCa | aTa | 7 | 7 | B.1.1.301 | 0.008255 |
S | 19 | T19K | aCa | aAa | 7 | 7 | B.1.2 | 0.000062 |
S | 19 | T19del | ACA | --- | 7 | 7 | B.1.617.2 | 0.000026 |
S | 19 | T19S | aCA | aGT | 4 | 7 | B.1.617.2 | 0.000015 |
S | 19 | T19S | aCA | aGC | 3 | 7 | B.1.617.2 | 0.000011 |
S | 19 | T19I | aCa | aTa | 6 | 6 | AY.102 | 0.000159 |
S | 19 | T19del | ACA | --- | 6 | 6 | AY.103 | 0.000037 |
S | 19 | T19I | aCa | aTa | 6 | 6 | AY.33 | 0.000401 |
S | 19 | T19S | aCA | aGT | 3 | 6 | AY.43 | 0.000013 |
S | 19 | T19S | aCA | aGC | 3 | 6 | AY.43 | 0.000013 |
S | 19 | T19K | aCa | aAa | 6 | 6 | AY.44 | 0.000037 |
S | 19 | T19I | aCa | aTa | 6 | 6 | AY.99.2 | 0.000553 |
S | 19 | T19K | aCa | aAa | 6 | 6 | B.1.177 | 0.000079 |
S | 19 | T19T | acA | acT | 6 | 6 | B.1.177 | 0.000079 |
S | 19 | T19T | acA | acT | 6 | 6 | B.1.177.44 | 0.003114 |
S | 19 | T19T | acA | acT | 6 | 6 | B.1.2 | 0.000053 |
S | 19 | T19R | aCa | aGa | 6 | 6 | B.1.369 | 0.001711 |
S | 19 | T19R | aCa | aGa | 6 | 6 | B.1.474 | 0.011407 |
S | 19 | T19R | aCa | aGa | 6 | 6 | B.1.623 | 0.003219 |
S | 19 | T19T | acA | acT | 4 | 6 | P.1 | 0.000063 |
S | 19 | T19T | acA | acG | 2 | 6 | P.1 | 0.000032 |
S | 19 | T19R | aCa | aGa | 6 | 6 | P.1.1 | 0.001906 |
S | 19 | T19R | aCa | aGa | 6 | 6 | P.1.17 | 0.000971 |
S | 19 | T19X | ACA | TAG | 2 | 5 | All | 0 |
S | 19 | T19X | ACa | TAa | 2 | 5 | All | 0 |
S | 19 | T19X | ACa | TGa | 1 | 5 | All | 0 |
S | 19 | T19G | ACa | GGa | 5 | 5 | AY.43 | 0.000022 |
S | 19 | T19I | aCa | aTa | 5 | 5 | AY.75.1 | 0.000902 |
S | 19 | T19R | aCa | aGa | 5 | 5 | B.1.1.317 | 0.002058 |
S | 19 | T19P | Aca | Cca | 5 | 5 | B.1.1.7 | 0.000004 |
S | 19 | T19I | aCa | aTa | 5 | 5 | B.1.160 | 0.000156 |
S | 19 | T19R | aCa | aGa | 5 | 5 | B.1.160 | 0.000156 |
S | 19 | T19R | aCa | aGa | 5 | 5 | B.1.375 | 0.004098 |
S | 19 | T19K | aCa | aAa | 5 | 5 | B.1.526 | 0.000118 |
S | 19 | T19I | aCa | aTa | 5 | 5 | D.2 | 0.000375 |
S | 19 | T19I | aCa | aTa | 5 | 5 | Q.4 | 0.002274 |
S | 19 | T19Q | ACa | CAa | 2 | 4 | 0.111111 | |
S | 19 | T19Q | ACA | CAG | 2 | 4 | 0.111111 | |
S | 19 | T19X | ACa | TAa | 2 | 4 | 0.111111 | |
S | 19 | T19X | ACA | TAG | 2 | 4 | 0.111111 | |
S | 19 | T19R | aCa | aGa | 4 | 4 | A | 0.001548 |
S | 19 | T19Q | ACa | CAa | 2 | 4 | All | 0 |
S | 19 | T19Q | ACA | CAG | 2 | 4 | All | 0 |
S | 19 | T19del | ACA | --- | 4 | 4 | AY.120 | 0.000149 |
S | 19 | T19K | aCa | aAa | 4 | 4 | AY.20 | 0.000155 |
S | 19 | T19K | aCa | aAa | 4 | 4 | AY.3 | 0.00004 |
S | 19 | T19S | aCA | aGC | 4 | 4 | AY.3 | 0.00004 |
S | 19 | T19del | ACA | --- | 4 | 4 | AY.39 | 0.000099 |
S | 19 | T19del | ACA | --- | 4 | 4 | AY.43 | 0.000018 |
S | 19 | T19I | aCa | aTa | 4 | 4 | AY.45 | 0.000487 |
S | 19 | T19I | aCa | aTa | 4 | 4 | AY.46 | 0.000416 |
S | 19 | T19I | aCa | aTa | 4 | 4 | AY.47 | 0.000124 |
S | 19 | T19I | aCa | aTa | 4 | 4 | AY.7 | 0.000784 |
S | 19 | T19del | ACA | --- | 4 | 4 | AY.75 | 0.000224 |
S | 19 | T19K | aCa | aAa | 4 | 4 | B.1 | 0.000037 |
S | 19 | T19T | acA | acG | 2 | 4 | B.1 | 0.000018 |
S | 19 | T19T | acA | acT | 2 | 4 | B.1 | 0.000018 |
S | 19 | T19R | aCa | aGa | 4 | 4 | B.1.157 | 0.01194 |
S | 19 | T19A | Aca | Gca | 4 | 4 | B.1.160 | 0.000125 |
S | 19 | T19A | Aca | Gca | 4 | 4 | B.1.177 | 0.000053 |
S | 19 | T19I | aCa | aTa | 4 | 4 | B.1.177.44 | 0.002076 |
S | 19 | T19I | aCa | aTa | 4 | 4 | B.1.177.54 | 0.002426 |
S | 19 | T19S | Aca | Tca | 4 | 4 | B.1.2 | 0.000035 |
S | 19 | T19I | aCa | aTa | 4 | 4 | B.1.221 | 0.000284 |
S | 19 | T19I | aCa | aTa | 4 | 4 | B.1.232 | 0.002149 |
S | 19 | T19I | aCa | aTa | 4 | 4 | B.1.313 | 0.026316 |
S | 19 | T19T | acA | acT | 4 | 4 | B.1.351 | 0.000119 |
S | 19 | T19R | aCa | aGa | 4 | 4 | B.1.36 | 0.000584 |
S | 19 | T19del | ACA | --- | 4 | 4 | B.1.525 | 0.000453 |
S | 19 | T19I | aCa | aTa | 4 | 4 | C.36 | 0.003643 |
S | 19 | T19R | aCa | aGa | 4 | 4 | C.37.1 | 0.010471 |
S | 19 | T19R | aCa | aGa | 3 | 3 | 0.166667 | |
S | 19 | T19R | aCa | aGa | 3 | 3 | AU.3 | 0.006329 |
S | 19 | T19I | aCa | aTa | 3 | 3 | AY.100 | 0.000138 |
S | 19 | T19S | aCA | aGT | 3 | 3 | AY.113 | 0.000427 |
S | 19 | T19I | aCa | aTa | 3 | 3 | AY.117 | 0.000254 |
S | 19 | T19G | ACa | GGa | 3 | 3 | AY.119 | 0.000106 |
S | 19 | T19G | ACa | GGa | 3 | 3 | AY.29 | 0.000047 |
S | 19 | T19del | ACA | --- | 3 | 3 | AY.3 | 0.00003 |
S | 19 | T19S | aCA | aGT | 2 | 3 | AY.44 | 0.000012 |
S | 19 | T19S | aCA | aGC | 1 | 3 | AY.44 | 0.000006 |
S | 19 | T19I | aCa | aTa | 3 | 3 | AY.5.3 | 0.001012 |
S | 19 | T19I | aCa | aTa | 3 | 3 | AY.6 | 0.000123 |
S | 19 | T19S | aCA | aGT | 3 | 3 | AY.6 | 0.000123 |
S | 19 | T19S | aCA | aGT | 3 | 3 | AY.7.1 | 0.000338 |
S | 19 | T19del | ACA | --- | 3 | 3 | AY.75.1 | 0.000541 |
S | 19 | T19del | ACA | --- | 3 | 3 | AY.98 | 0.000237 |
S | 19 | T19K | aCa | aAa | 3 | 3 | B.1.1 | 0.000054 |
S | 19 | T19T | acA | acG | 1 | 3 | B.1.1 | 0.000018 |
S | 19 | T19T | acA | acT | 1 | 3 | B.1.1 | 0.000018 |
S | 19 | T19T | acA | acC | 1 | 3 | B.1.1 | 0.000018 |
S | 19 | T19R | aCa | aGa | 3 | 3 | B.1.1.161 | 0.010601 |
S | 19 | T19I | aCa | aTa | 3 | 3 | B.1.1.170 | 0.003741 |
S | 19 | T19I | aCa | aTa | 3 | 3 | B.1.1.222 | 0.000612 |
S | 19 | T19R | aCa | aGa | 3 | 3 | B.1.1.294 | 0.003797 |
S | 19 | T19R | aCa | aGa | 3 | 3 | B.1.1.432 | 0.003797 |
S | 19 | T19R | aCa | aGa | 3 | 3 | B.1.1.523 | 0.004687 |
S | 19 | T19del1 | acA | ac- | 3 | 3 | B.1.1.7 | 0.000003 |
S | 19 | T19I | aCa | aTa | 3 | 3 | B.1.177.57 | 0.000843 |
S | 19 | T19I | aCa | aTa | 3 | 3 | B.1.240 | 0.000647 |
S | 19 | T19R | aCa | aGa | 3 | 3 | B.1.243 | 0.000209 |
S | 19 | T19I | aCa | aTa | 3 | 3 | B.1.258 | 0.0002 |
S | 19 | T19R | aCa | aGa | 3 | 3 | B.1.349 | 0.002144 |
S | 19 | T19R | aCa | aGa | 3 | 3 | B.1.580 | 0.012195 |
S | 19 | T19R | aCa | aGa | 3 | 3 | B.1.604 | 0.051724 |
S | 19 | T19I | aCa | aTa | 3 | 3 | B.1.621 | 0.000266 |
S | 19 | T19K | aCa | aAa | 3 | 3 | B.1.93 | 0.002801 |
S | 19 | T19I | aCa | aTa | 3 | 3 | C.37 | 0.000348 |
S | 19 | T19del | ACA | --- | 3 | 3 | P.1 | 0.000047 |
S | 19 | T19R | aCa | aGa | 3 | 3 | P.1.13 | 0.002695 |
S | 19 | T19I | aCa | aTa | 3 | 3 | P.1.15 | 0.000697 |
S | 19 | T19I | aCa | aTa | 3 | 3 | P.1.2 | 0.003468 |
S | 19 | T19R | aCa | aGa | 3 | 3 | P.1.7 | 0.000958 |
S | 19 | T19I | aCa | aTa | 3 | 3 | Q.8 | 0.000495 |
S | 19 | T19I | aCa | aTa | 2 | 2 | A | 0.000774 |
S | 19 | T19I | aCa | aTa | 2 | 2 | A.2.5.2 | 0.003145 |
S | 19 | T19del2 | aCA | a-- | 2 | 2 | All | 0 |
S | 19 | T19G | ACa | GGa | 2 | 2 | AY.101 | 0.000981 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.109 | 0.001479 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.118 | 0.000125 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.121 | 0.000271 |
S | 19 | T19G | ACa | GGa | 2 | 2 | AY.20 | 0.000078 |
S | 19 | T19G | ACa | GGa | 2 | 2 | AY.23 | 0.000139 |
S | 19 | T19del | ACA | --- | 2 | 2 | AY.25 | 0.000012 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.27 | 0.000129 |
S | 19 | T19G | ACa | GGa | 2 | 2 | AY.3 | 0.00002 |
S | 19 | T19G | ACa | GGa | 2 | 2 | AY.39 | 0.000049 |
S | 19 | T19S | aCA | aGC | 1 | 2 | AY.39 | 0.000025 |
S | 19 | T19S | aCA | aGT | 1 | 2 | AY.39 | 0.000025 |
S | 19 | T19S | aCA | aGT | 2 | 2 | AY.4.2 | 0.000043 |
S | 19 | T19K | aCa | aAa | 2 | 2 | AY.42 | 0.00008 |
S | 19 | T19S | aCA | aGT | 2 | 2 | AY.47 | 0.000062 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.54 | 0.000191 |
S | 19 | T19K | aCa | aAa | 2 | 2 | AY.56 | 0.00321 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.58 | 0.001815 |
S | 19 | T19K | aCa | aAa | 2 | 2 | AY.6 | 0.000082 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.61 | 0.00021 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.7.1 | 0.000225 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.72 | 0.002721 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.75 | 0.000112 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.85 | 0.000854 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.87 | 0.001665 |
S | 19 | T19I | aCa | aTa | 2 | 2 | AY.94 | 0.000885 |
S | 19 | T19del1 | aCa | a-a | 2 | 2 | B.1 | 0.000018 |
S | 19 | T19del | ACA | --- | 2 | 2 | B.1 | 0.000018 |
S | 19 | T19S | Aca | Tca | 2 | 2 | B.1 | 0.000018 |
S | 19 | T19P | Aca | Cca | 1 | 2 | B.1.1 | 0.000018 |
S | 19 | T19P | AcA | CcC | 1 | 2 | B.1.1 | 0.000018 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.1.369 | 0.000892 |
S | 19 | T19T | acA | acT | 2 | 2 | B.1.1.432 | 0.002532 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.1.518 | 0.012658 |
S | 19 | T19T | acA | acT | 2 | 2 | B.1.1.526 | 0.007092 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.143 | 0.042553 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.170 | 0.008621 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.177.17 | 0.001642 |
S | 19 | T19T | acA | acG | 2 | 2 | B.1.177.23 | 0.006472 |
S | 19 | T19A | Aca | Gca | 2 | 2 | B.1.177.80 | 0.003824 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.241 | 0.001623 |
S | 19 | T19A | Aca | Gca | 2 | 2 | B.1.243 | 0.000139 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.258.17 | 0.000208 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.311 | 0.000549 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.320 | 0.002491 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.335 | 0.020619 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.36 | 0.000292 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.36.29 | 0.001035 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.36.29 | 0.001035 |
S | 19 | T19S | Aca | Tca | 2 | 2 | B.1.429 | 0.000047 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.429 | 0.000047 |
S | 19 | T19del | ACA | --- | 2 | 2 | B.1.429 | 0.000047 |
S | 19 | T19K | aCa | aAa | 2 | 2 | B.1.429 | 0.000047 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.432 | 0.022472 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.433 | 0.00639 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.466 | 0.046512 |
S | 19 | T19T | acA | acT | 2 | 2 | B.1.480 | 0.004975 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.485 | 0.029851 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.526 | 0.000047 |
S | 19 | T19T | acA | acT | 1 | 2 | B.1.526 | 0.000024 |
S | 19 | T19T | acA | acC | 1 | 2 | B.1.526 | 0.000024 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.530 | 0.014286 |
S | 19 | T19A | Aca | Gca | 2 | 2 | B.1.568 | 0.002222 |
S | 19 | T19T | acA | acG | 2 | 2 | B.1.594 | 0.0625 |
S | 19 | T19K | aCa | aAa | 2 | 2 | B.1.595 | 0.000522 |
S | 19 | T19del1 | aCa | a-a | 2 | 2 | B.1.617.1 | 0.000258 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.619 | 0.001742 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.620 | 0.001892 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.629 | 0.026667 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.1.637 | 0.000146 |
S | 19 | T19A | Aca | Gca | 2 | 2 | B.1.638 | 0.105263 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.8 | 0.003945 |
S | 19 | T19I | aCa | aTa | 2 | 2 | B.1.84 | 0.041667 |
S | 19 | T19R | aCa | aGa | 2 | 2 | B.55 | 0.0059 |
S | 19 | T19R | aCa | aGa | 2 | 2 | C.36.3.1 | 0.005435 |
S | 19 | T19R | aCa | aGa | 2 | 2 | C.37 | 0.000232 |
S | 19 | T19R | aCa | aGa | 2 | 2 | P.1.10 | 0.000539 |
S | 19 | T19I | aCa | aTa | 2 | 2 | P.1.7 | 0.000639 |
S | 19 | T19R | aCa | aGa | 2 | 2 | P.2 | 0.000373 |
S | 19 | T19I | aCa | aTa | 2 | 2 | Q.2 | 0.001227 |
S | 19 | T19S | Aca | Tca | 1 | 1 | A | 0.000387 |
S | 19 | T19R | aCa | aGa | 1 | 1 | A.2 | 0.000662 |
S | 19 | T19del | ACA | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 19 | T19R | aCa | aGa | 1 | 1 | A.2.5 | 0.000499 |
S | 19 | T19A | Aca | Gca | 1 | 1 | A.23.1 | 0.000704 |
S | 19 | T19I | aCa | aTa | 1 | 1 | A.3 | 0.002096 |
S | 19 | T19R | aCa | aGa | 1 | 1 | AT.1 | 0.005128 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AU.3 | 0.00211 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.1 | 0.000396 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.100 | 0.000046 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.101 | 0.00049 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.102 | 0.000027 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.102 | 0.000027 |
S | 19 | T19S | aCA | aGC | 1 | 1 | AY.103 | 0.000006 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.111 | 0.000183 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.113 | 0.000142 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.113 | 0.000142 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.114 | 0.000231 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.114 | 0.000231 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.116 | 0.000287 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.116 | 0.000287 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.116.1 | 0.000311 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.117 | 0.000085 |
S | 19 | T19S | aCA | aGC | 1 | 1 | AY.117 | 0.000085 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.117 | 0.000085 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.119 | 0.000035 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.120.1 | 0.000321 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.13 | 0.000161 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.20 | 0.000039 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.24 | 0.000431 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.25 | 0.000006 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.28 | 0.00189 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.29 | 0.000016 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.29 | 0.000016 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.32 | 0.000532 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.36 | 0.000148 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.38 | 0.000499 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.39.1 | 0.00004 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.39.1 | 0.00004 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.42 | 0.00004 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.45 | 0.000122 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.46 | 0.000104 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.46.4 | 0.000165 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.47 | 0.000031 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.47 | 0.000031 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.47 | 0.000031 |
S | 19 | T19S | aCA | aGT | 1 | 1 | AY.48 | 0.000465 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.5 | 0.000021 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.5 | 0.000021 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.5 | 0.000021 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.5.3 | 0.000337 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.5.3 | 0.000337 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.52 | 0.000814 |
S | 19 | T19del2 | aCA | a-- | 1 | 1 | AY.54 | 0.000095 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.59 | 0.00053 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.6 | 0.000041 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.61 | 0.000105 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.61 | 0.000105 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.64 | 0.000595 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.67 | 0.000464 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.68 | 0.000274 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.68 | 0.000274 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.69 | 0.000187 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.70 | 0.000209 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.76 | 0.004831 |
S | 19 | T19del | ACA | --- | 1 | 1 | AY.78 | 0.001541 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.79 | 0.001211 |
S | 19 | T19K | aCa | aAa | 1 | 1 | AY.85 | 0.000427 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.9 | 0.000068 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
S | 19 | T19G | ACa | GGa | 1 | 1 | AY.9.2 | 0.000037 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.91 | 0.00073 |
S | 19 | T19S | aCA | aGT | 1 | 1 | AY.94 | 0.000443 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AY.99.1 | 0.001553 |
S | 19 | T19I | aCa | aTa | 1 | 1 | AZ.2 | 0.000821 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B | 0.000128 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B | 0.000128 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.1.121 | 0.002427 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.1.254 | 0.011236 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.1.28 | 0.000311 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.1.291 | 0.000742 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.1.311 | 0.000358 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.1.326 | 0.001761 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.329 | 0.003846 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
S | 19 | T19T | acA | acG | 1 | 1 | B.1.1.356 | 0.008547 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.1.401 | 0.066667 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.416 | 0.000905 |
S | 19 | T19T | acA | acT | 1 | 1 | B.1.1.437 | 0.010417 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 19 | T19K | aCa | aAa | 1 | 1 | B.1.1.462 | 0.008621 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.464 | 0.001473 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.1.512 | 0.028571 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 19 | T19T | acA | acG | 1 | 1 | B.1.1.523 | 0.001563 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.1.526 | 0.003546 |
S | 19 | T19T | acA | acG | 1 | 1 | B.1.1.63 | 0.000386 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.1.63 | 0.000386 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.104 | 0.00369 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.110.3 | 0.000718 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.128 | 0.000635 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.131 | 0.008772 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.142 | 0.002899 |
S | 19 | T19T | acA | acG | 1 | 1 | B.1.147 | 0.000756 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.160.16 | 0.000929 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.160.20 | 0.008929 |
S | 19 | T19S | Aca | Tca | 1 | 1 | B.1.177 | 0.000013 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.177.10 | 0.000878 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.177.15 | 0.000631 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.177.4 | 0.000211 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.177.6 | 0.000977 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.177.60 | 0.000218 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.177.7 | 0.000165 |
S | 19 | T19K | aCa | aAa | 1 | 1 | B.1.177.7 | 0.000165 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.177.73 | 0.000566 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.177.87 | 0.000728 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.179 | 0.003759 |
S | 19 | T19del1 | acA | ac- | 1 | 1 | B.1.2 | 0.000009 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.206 | 0.000816 |
S | 19 | T19K | aCa | aAa | 1 | 1 | B.1.221 | 0.000071 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.221 | 0.000071 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.221 | 0.000071 |
S | 19 | T19T | acA | acG | 1 | 1 | B.1.234 | 0.000132 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.243.2 | 0.014493 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.247 | 0.014925 |
S | 19 | T19T | acA | acT | 1 | 1 | B.1.258 | 0.000067 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.258 | 0.000067 |
S | 19 | T19S | Aca | Tca | 1 | 1 | B.1.258 | 0.000067 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.258.16 | 0.001637 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.258.3 | 0.001675 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.301 | 0.005917 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.325 | 0.006897 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.336 | 0.002439 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.349 | 0.000715 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.351.3 | 0.000876 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.351.5 | 0.0006 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.355 | 0.011111 |
S | 19 | T19del1 | aCa | a-a | 1 | 1 | B.1.36 | 0.000146 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.36.16 | 0.001425 |
S | 19 | T19K | aCa | aAa | 1 | 1 | B.1.36.18 | 0.00042 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.36.24 | 0.006173 |
S | 19 | T19del1 | aCa | a-a | 1 | 1 | B.1.36.29 | 0.000517 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.36.38 | 0.001642 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.366 | 0.004878 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.367 | 0.000792 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.380 | 0.006623 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.393 | 0.028571 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.397 | 0.004854 |
S | 19 | T19S | Aca | Tca | 1 | 1 | B.1.427 | 0.00005 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.427 | 0.00005 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 19 | T19T | acA | acG | 1 | 1 | B.1.429 | 0.000024 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.436 | 0.001029 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.438.1 | 0.000107 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.439 | 0.005917 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.459 | 0.004082 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.462 | 0.007246 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.466.2 | 0.000391 |
S | 19 | T19T | acA | acT | 1 | 1 | B.1.466.2 | 0.000391 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.497 | 0.000315 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.497 | 0.000315 |
S | 19 | T19S | Aca | Tca | 1 | 1 | B.1.525 | 0.000113 |
S | 19 | T19del1 | acA | ac- | 1 | 1 | B.1.525 | 0.000113 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.538 | 0.008065 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.564 | 0.000426 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.565 | 0.00081 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.571 | 0.009709 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.573 | 0.006098 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.575 | 0.000303 |
S | 19 | T19T | acA | acT | 1 | 1 | B.1.575 | 0.000303 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.575.2 | 0.004808 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.581 | 0.009434 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.582 | 0.000491 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.589 | 0.007576 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.595 | 0.000261 |
S | 19 | T19T | acA | acT | 1 | 1 | B.1.596 | 0.000087 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.609 | 0.000479 |
S | 19 | T19X | ACa | TGa | 1 | 1 | B.1.617.2 | 0.000004 |
S | 19 | T19del1 | aCa | a-a | 1 | 1 | B.1.617.2 | 0.000004 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.620 | 0.000946 |
S | 19 | T19del | ACA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 19 | T19T | acA | acG | 1 | 1 | B.1.621 | 0.000089 |
S | 19 | T19K | aCa | aAa | 1 | 1 | B.1.621 | 0.000089 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.621 | 0.000089 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.621.1 | 0.000506 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.630 | 0.005236 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.631 | 0.003367 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.637 | 0.000073 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.70 | 0.02439 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.1.81 | 0.021277 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.1.9 | 0.006173 |
S | 19 | T19A | Aca | Gca | 1 | 1 | B.1.9.5 | 0.005682 |
S | 19 | T19P | Aca | Cca | 1 | 1 | B.40 | 0.000364 |
S | 19 | T19R | aCa | aGa | 1 | 1 | B.40 | 0.000364 |
S | 19 | T19I | aCa | aTa | 1 | 1 | B.40 | 0.000364 |
S | 19 | T19K | aCa | aAa | 1 | 1 | B.57 | 0.015152 |
S | 19 | T19del2 | aCA | a-- | 1 | 1 | B.61 | 0.005747 |
S | 19 | T19K | aCa | aAa | 1 | 1 | C.1.2 | 0.004255 |
S | 19 | T19I | aCa | aTa | 1 | 1 | C.14 | 0.004329 |
S | 19 | T19K | aCa | aAa | 1 | 1 | C.16 | 0.00106 |
S | 19 | T19I | aCa | aTa | 1 | 1 | C.16 | 0.00106 |
S | 19 | T19K | aCa | aAa | 1 | 1 | C.36.1 | 0.004149 |
S | 19 | T19R | aCa | aGa | 1 | 1 | C.36.3 | 0.000567 |
S | 19 | T19del | ACA | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 19 | T19S | Aca | Tca | 1 | 1 | C.37 | 0.000116 |
S | 19 | T19A | Aca | Gca | 1 | 1 | C.37 | 0.000116 |
S | 19 | T19I | aCa | aTa | 1 | 1 | C.37.1 | 0.002618 |
S | 19 | T19A | Aca | Gca | 1 | 1 | P.1 | 0.000016 |
S | 19 | T19I | aCa | aTa | 1 | 1 | P.1.10 | 0.000269 |
S | 19 | T19R | aCa | aGa | 1 | 1 | P.1.10.1 | 0.00813 |
S | 19 | T19I | aCa | aTa | 1 | 1 | P.1.12 | 0.000484 |
S | 19 | T19R | aCa | aGa | 1 | 1 | P.1.16 | 0.000374 |
S | 19 | T19I | aCa | aTa | 1 | 1 | P.2 | 0.000187 |
S | 19 | T19I | aCa | aTa | 1 | 1 | P.3 | 0.001595 |
S | 19 | T19A | Aca | Gca | 1 | 1 | Q.8 | 0.000165 |
S | 19 | T19T | acA | acT | 1 | 1 | Q.8 | 0.000165 |
S | 19 | T19T | acA | acT | 1 | 1 | R.1 | 0.00009 |
S | 19 | T19I | aCa | aTa | 1 | 1 | W.3 | 0.005263 |
S | 19 | T19I | aCa | aTa | 1 | 1 | XA | 0.022222 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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