CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 189

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S189L189FnonsynCttTtt11334113320.99982422127-22129
S189L189FnonsynCtTTtC1133420.0001764622127-22129
S189L189deldelCTT---214214122127-22129
S189L189LsynctTctC87480.55172422127-22129
S189L189LsynctTctG87200.22988522127-22129
S189L189LsynctTctA87180.20689722127-22129
S189L189LsynCtTTtA8710.011494322127-22129
S189L189InonsynCttAtt7474122127-22129
S189L189PnonsyncTtcCt1212122127-22129
S189L189RnonsyncTtcGt760.85714322127-22129
S189L189RnonsyncTTcGC710.14285722127-22129
S189L189SnonsynCTtTCt66122127-22129
S189L189del2delcTTc--640.66666722127-22129
S189L189del2delCTt--t610.16666722127-22129
S189L189del2delCTT--N610.16666722127-22129
S189L189HnonsyncTtcAt44122127-22129
S189L189VnonsynCttGtt33122127-22129
S189L189CnonsynCTtTGt320.66666722127-22129
S189L189del1delctTct-310.33333322127-22129
S189L189del1delcTtc-t310.33333322127-22129
S189L189del1delCtt-tt310.33333322127-22129
S189L189CnonsynCTTTGC310.33333322127-22129

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S189L189FCttTtt1133211334All0.002167
S189L189FCtTTtC211334All0
S189L189FCttTtt95329532B.1.258.170.991058
S189L189FCttTtt288288B.1.258.40.993103
S189L189FCttTtt243243AY.250.001462
S189L189delCTT---214214All0.000041
S189L189FCttTtt178178AY.90.012032
S189L189FCttTtt151151B.10.001383
S189L189FCttTtt143143B.1.2580.009516
S189L189FCttTtt114114B.1.258.51
S189L189FCttTtt9393AY.40.000145
S189L189LctTctC4887All0.000009
S189L189LctTctG2087All0.000004
S189L189LctTctA1887All0.000003
S189L189LCtTTtA187All0
S189L189ICttAtt7474All0.000014
S189L189FCttTtt6363B.1.1.4320.079747
S189L189FCttTtt5353B.1.1.70.000047
S189L189delCTT---4444B.1.1.70.000039
S189L189FCttTtt4343B.1.20.000379
S189L189FCttTtt4141B.1.258.230.97619
S189L189FCttTtt3131B.1.1770.000408
S189L189FCttTtt3131B.1.6090.014861
S189L189delCTT---3131P.10.000488
S189L189FCttTtt2929B.1.617.20.000109
S189L189FCttTtt2828P.10.000441
S189L189FCttTtt2525B.1.10.000454
S189L189FCttTtt2222B.1.3110.006041
S189L189FCttTtt1919B.1.258.240.204301
S189L189ICttAtt1616AY.9.10.00134
S189L189delCTT---1414AY.430.000062
S189L189FCttTtt1414AY.440.000085
S189L189FCttTtt1414B.1.3670.011094
S189L189PcTtcCt1212All0.000002
S189L189LctTctA612B.1.1.70.000005
S189L189LctTctC612B.1.1.70.000005
S189L189FCttTtt1111AY.430.000049
S189L189delCTT---1111B.1.1770.000145
S189L189LctTctC811B.1.20.00007
S189L189LctTctG211B.1.20.000018
S189L189LctTctA111B.1.20.000009
S189L189delCTT---1010B.10.000092
S189L189delCTT---99AY.40.000014
S189L189delCTT---99P.1.150.002091
S189L189delCTT---88AY.4.50.00086
S189L189ICttAtt88AY.430.000035
S189L189LctTctG78AY.440.000043
S189L189LctTctA18AY.440.000006
S189L189FCttTtt88B0.001022
S189L189FCttTtt88B.1.1.5190.000318
S189L189RcTtcGt67All0.000001
S189L189RcTTcGC17All0
S189L189LctTctC77B.1.10.000127
S189L189FCttTtt77B.4.10.132075
S189L189FCttTtt66AE.80.002934
S189L189SCTtTCt66All0.000001
S189L189del2cTTc--46All0.000001
S189L189del2CTT--N16All0
S189L189del2CTt--t16All0
S189L189ICttAtt66AY.420.000241
S189L189ICttAtt66B.10.000055
S189L189ICttAtt66B.1.10.000109
S189L189FCttTtt66B.1.1600.000187
S189L189delCTT---66B.1.617.20.000023
S189L189LctTctC36B.1.617.20.000011
S189L189LctTctG26B.1.617.20.000008
S189L189LctTctA16B.1.617.20.000004
S189L189delCTT---66C.370.000696
S189L189delCTT---66P.1.160.002245
S189L189LctTctA55AZ.10.004337
S189L189FCttTtt55B.1.2210.000355
S189L189delCTT---55B.1.360.00073
S189L189FCttTtt55B.1.3750.004098
S189L189HcTtcAt44All0.000001
S189L189FCttTtt44AY.1030.000025
S189L189FCttTtt44AY.420.000161
S189L189FCttTtt44AY.80.002424
S189L189FCttTtt44AY.950.003044
S189L189LctTctC44B.10.000037
S189L189ICttAtt44B.1.1.70.000004
S189L189RcTtcGt44B.1.1.70.000004
S189L189FCttTtt44B.1.177.540.002426
S189L189FCttTtt44P.1.120.001936
S189L189LctTctA130.055556
S189L189LCtTTtA130.055556
S189L189LctTctC130.055556
S189L189VCttGtt33All0.000001
S189L189CCTtTGt23All0
S189L189CCTTTGC13All0
S189L189del1Ctt-tt13All0
S189L189del1cTtc-t13All0
S189L189del1ctTct-13All0
S189L189FCttTtt33AY.130.000483
S189L189delCTT---33AY.250.000018
S189L189FCttTtt33AY.410.000882
S189L189FCttTtt33AY.98.10.000145
S189L189LctTctG33B.1.1.4640.004418
S189L189PcTtcCt33B.1.1.70.000003
S189L189FCttTtt33B.1.36.380.004926
S189L189FCttTtt33B.1.4970.000944
S189L189ICttAtt33B.1.617.20.000011
S189L189FCttTtt33P.1.10.000953
S189L189ICttAtt33P.1.140.000143
S189L189SCTtTCt220.111111
S189L189FCttTtt120.055556
S189L189FCtTTtC120.055556
S189L189delCTT---22AY.1200.000074
S189L189ICttAtt22AY.230.000139
S189L189delCTT---22AY.290.000032
S189L189FCttTtt22AY.330.000134
S189L189ICttAtt22AY.330.000134
S189L189FCttTtt22AY.390.000049
S189L189ICttAtt22AY.40.000003
S189L189LctTctC12AY.40.000002
S189L189LctTctG12AY.40.000002
S189L189LctTctG12AY.4.20.000022
S189L189LctTctC12AY.4.20.000022
S189L189delCTT---22AY.440.000012
S189L189delCTT---22AY.46.20.001271
S189L189FCttTtt22AY.5.30.000675
S189L189FCttTtt22AY.70.000392
S189L189delCTT---22AY.90.000135
S189L189CCTtTGt12AY.980.000079
S189L189CCTTTGC12AY.980.000079
S189L189FCtTTtC12AY.980.000079
S189L189FCttTtt12AY.980.000079
S189L189RcTTcGC12AY.980.000079
S189L189RcTtcGt12AY.980.000079
S189L189PcTtcCt22B.10.000018
S189L189delCTT---22B.1.10.000036
S189L189FCttTtt22B.1.1.2200.003717
S189L189FCttTtt22B.1.1.2220.000408
S189L189FCttTtt22B.1.1.4090.005666
S189L189del2CTt--t12B.1.1.70.000001
S189L189del2cTTc--12B.1.1.70.000001
S189L189delCTT---22B.1.177.160.001329
S189L189FCttTtt22B.1.177.730.001133
S189L189delCTT---22B.1.20.000018
S189L189FCttTtt22B.1.360.000292
S189L189FCttTtt22B.1.36.80.002
S189L189FCttTtt22B.1.4290.000047
S189L189delCTT---22B.1.6210.000177
S189L189FCttTtt22C.370.000232
S189L189ICttAtt22P.10.000032
S189L189FCttTtt22P.1.20.002312
S189L189ICttAtt11A0.000387
S189L189FCttTtt11A.2.50.000499
S189L189delCTT---11A.2.50.000499
S189L189LctTctA11AY.100.00053
S189L189LctTctC11AY.1000.000046
S189L189delCTT---11AY.1000.000046
S189L189SCTtTCt11AY.1030.000006
S189L189ICttAtt11AY.1030.000006
S189L189LctTctC11AY.1130.000142
S189L189FCttTtt11AY.1160.000287
S189L189ICttAtt11AY.1210.000135
S189L189HcTtcAt11AY.140.000088
S189L189FCttTtt11AY.230.00007
S189L189delCTT---11AY.240.000431
S189L189del2CTT--N11AY.250.000006
S189L189PcTtcCt11AY.250.000006
S189L189delCTT---11AY.260.000028
S189L189delCTT---11AY.30.00001
S189L189del1Ctt-tt11AY.330.000067
S189L189LctTctA11AY.330.000067
S189L189PcTtcCt11AY.390.000025
S189L189del2cTTc--11AY.40.000002
S189L189FCttTtt11AY.4.20.000022
S189L189FCttTtt11AY.4.50.000107
S189L189LctTctG11AY.420.00004
S189L189CCTtTGt11AY.440.000006
S189L189PcTtcCt11AY.450.000122
S189L189ICttAtt11AY.460.000104
S189L189FCttTtt11AY.46.40.000165
S189L189ICttAtt11AY.46.60.000072
S189L189LctTctC11AY.46.60.000072
S189L189delCTT---11AY.470.000031
S189L189ICttAtt11AY.50.000021
S189L189FCttTtt11AY.50.000021
S189L189FCttTtt11AY.520.000814
S189L189FCttTtt11AY.540.000095
S189L189ICttAtt11AY.600.000938
S189L189LctTctC11AY.750.000056
S189L189FCttTtt11AY.750.000056
S189L189ICttAtt11AY.750.000056
S189L189PcTtcCt11AY.75.10.00018
S189L189FCttTtt11AY.75.10.00018
S189L189LctTctG11AY.850.000427
S189L189PcTtcCt11AY.850.000427
S189L189RcTtcGt11AY.90.000068
S189L189FCttTtt11AY.9.20.000037
S189L189delCTT---11AY.960.002075
S189L189LctTctC11AY.980.000079
S189L189ICttAtt11AY.98.10.000048
S189L189LctTctC11B0.000128
S189L189delCTT---11B0.000128
S189L189ICttAtt11B0.000128
S189L189SCTtTCt11B.10.000009
S189L189HcTtcAt11B.10.000009
S189L189VCttGtt11B.10.000009
S189L189del1ctTct-11B.1.1.1700.001247
S189L189FCttTtt11B.1.1.1980.001468
S189L189FCttTtt11B.1.1.2630.001558
S189L189LctTctC11B.1.1.280.000311
S189L189FCttTtt11B.1.1.2840.000107
S189L189delCTT---11B.1.1.3110.000358
S189L189delCTT---11B.1.1.3150.008475
S189L189LctTctC11B.1.1.3160.000925
S189L189FCttTtt11B.1.1.3170.000412
S189L189FCttTtt11B.1.1.3180.000302
S189L189LctTctC11B.1.1.330.000421
S189L189FCttTtt11B.1.1.3480.000796
S189L189FCttTtt11B.1.1.4450.037037
S189L189PcTtcCt11B.1.1.5190.00004
S189L189VCttGtt11B.1.1.70.000001
S189L189del1cTtc-t11B.1.1.70.000001
S189L189SCTtTCt11B.1.1.70.000001
S189L189delCTT---11B.1.1.700.000341
S189L189FCttTtt11B.1.1.700.000341
S189L189FCttTtt11B.1.1390.000733
S189L189delCTT---11B.1.1400.018868
S189L189FCttTtt11B.1.1570.002985
S189L189delCTT---11B.1.1600.000031
S189L189LctTctC11B.1.160.220.006757
S189L189delCTT---11B.1.160.230.004831
S189L189del2cTTc--11B.1.1770.000013
S189L189LctTctC11B.1.1770.000013
S189L189del2cTTc--11B.1.177.100.000878
S189L189FCttTtt11B.1.177.120.000152
S189L189delCTT---11B.1.177.180.00116
S189L189delCTT---11B.1.177.210.000076
S189L189FCttTtt11B.1.177.330.001645
S189L189FCttTtt11B.1.177.40.000211
S189L189FCttTtt11B.1.177.520.001757
S189L189delCTT---11B.1.177.60.000977
S189L189delCTT---11B.1.177.620.001192
S189L189delCTT---11B.1.177.690.001484
S189L189FCttTtt11B.1.177.70.000165
S189L189delCTT---11B.1.2180.005155
S189L189ICttAtt11B.1.2210.000071
S189L189FCttTtt11B.1.230.006061
S189L189FCttTtt11B.1.2320.000537
S189L189FCttTtt11B.1.2370.004975
S189L189FCttTtt11B.1.2430.00007
S189L189delCTT---11B.1.2580.000067
S189L189delCTT---11B.1.258.30.001675
S189L189ICttAtt11B.1.3010.005917
S189L189FCttTtt11B.1.3280.03125
S189L189FCttTtt11B.1.3560.001727
S189L189delCTT---11B.1.36.180.00042
S189L189delCTT---11B.1.36.20.010753
S189L189FCttTtt11B.1.36.260.002857
S189L189LctTctC11B.1.36.80.001
S189L189FCttTtt11B.1.3620.001541
S189L189LctTctC11B.1.3690.000285
S189L189SCTtTCt11B.1.3910.001127
S189L189FCttTtt11B.1.3910.001127
S189L189PcTtcCt11B.1.3910.001127
S189L189delCTT---11B.1.4090.000781
S189L189LctTctA11B.1.4270.00005
S189L189LctTctG11B.1.4290.000024
S189L189delCTT---11B.1.438.10.000107
S189L189FCttTtt11B.1.4700.001404
S189L189HcTtcAt11B.1.4970.000315
S189L189FCttTtt11B.1.5240.001406
S189L189FCttTtt11B.1.5260.000024
S189L189delCTT---11B.1.5610.000397
S189L189FCttTtt11B.1.5750.000303
S189L189FCttTtt11B.1.5900.004545
S189L189LctTctC11B.1.5960.000087
S189L189FCttTtt11B.1.5990.00365
S189L189delCTT---11B.1.617.10.000129
S189L189HcTtcAt11B.1.617.20.000004
S189L189FCttTtt11B.1.6190.000871
S189L189delCTT---11B.1.6200.000946
S189L189delCTT---11B.1.621.10.000506
S189L189ICttAtt11B.1.6230.000536
S189L189FCttTtt11B.1.6230.000536
S189L189FCttTtt11B.1.6270.00202
S189L189LctTctG11B.1.6300.005236
S189L189delCTT---11B.1.6380.052632
S189L189LctTctC11B.310.003731
S189L189delCTT---11B.340.013699
S189L189ICttAtt11B.60.00091
S189L189FCttTtt11C.130.025641
S189L189LctTctC11C.350.000774
S189L189FCttTtt11D.20.000075
S189L189VCttGtt11P.10.000016
S189L189delCTT---11P.1.10.000318
S189L189FCttTtt11P.1.140.000048
S189L189FCttTtt11P.1.150.000232
S189L189FCttTtt11P.1.160.000374
S189L189FCttTtt11P.1.170.000162
S189L189LctTctC11Q.80.000165
S189L189delCTT---11U.30.003861