CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 189 | L189F | nonsyn | Ctt | Ttt | 11334 | 11332 | 0.999824 | 22127-22129 | |
S | 189 | L189F | nonsyn | CtT | TtC | 11334 | 2 | 0.00017646 | 22127-22129 | |
S | 189 | L189del | del | CTT | --- | 214 | 214 | 1 | 22127-22129 | |
S | 189 | L189L | syn | ctT | ctC | 87 | 48 | 0.551724 | 22127-22129 | |
S | 189 | L189L | syn | ctT | ctG | 87 | 20 | 0.229885 | 22127-22129 | |
S | 189 | L189L | syn | ctT | ctA | 87 | 18 | 0.206897 | 22127-22129 | |
S | 189 | L189L | syn | CtT | TtA | 87 | 1 | 0.0114943 | 22127-22129 | |
S | 189 | L189I | nonsyn | Ctt | Att | 74 | 74 | 1 | 22127-22129 | |
S | 189 | L189P | nonsyn | cTt | cCt | 12 | 12 | 1 | 22127-22129 | |
S | 189 | L189R | nonsyn | cTt | cGt | 7 | 6 | 0.857143 | 22127-22129 | |
S | 189 | L189R | nonsyn | cTT | cGC | 7 | 1 | 0.142857 | 22127-22129 | |
S | 189 | L189S | nonsyn | CTt | TCt | 6 | 6 | 1 | 22127-22129 | |
S | 189 | L189del2 | del | cTT | c-- | 6 | 4 | 0.666667 | 22127-22129 | |
S | 189 | L189del2 | del | CTt | --t | 6 | 1 | 0.166667 | 22127-22129 | |
S | 189 | L189del2 | del | CTT | --N | 6 | 1 | 0.166667 | 22127-22129 | |
S | 189 | L189H | nonsyn | cTt | cAt | 4 | 4 | 1 | 22127-22129 | |
S | 189 | L189V | nonsyn | Ctt | Gtt | 3 | 3 | 1 | 22127-22129 | |
S | 189 | L189C | nonsyn | CTt | TGt | 3 | 2 | 0.666667 | 22127-22129 | |
S | 189 | L189del1 | del | ctT | ct- | 3 | 1 | 0.333333 | 22127-22129 | |
S | 189 | L189del1 | del | cTt | c-t | 3 | 1 | 0.333333 | 22127-22129 | |
S | 189 | L189del1 | del | Ctt | -tt | 3 | 1 | 0.333333 | 22127-22129 | |
S | 189 | L189C | nonsyn | CTT | TGC | 3 | 1 | 0.333333 | 22127-22129 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 189 | L189F | Ctt | Ttt | 11332 | 11334 | All | 0.002167 |
S | 189 | L189F | CtT | TtC | 2 | 11334 | All | 0 |
S | 189 | L189F | Ctt | Ttt | 9532 | 9532 | B.1.258.17 | 0.991058 |
S | 189 | L189F | Ctt | Ttt | 288 | 288 | B.1.258.4 | 0.993103 |
S | 189 | L189F | Ctt | Ttt | 243 | 243 | AY.25 | 0.001462 |
S | 189 | L189del | CTT | --- | 214 | 214 | All | 0.000041 |
S | 189 | L189F | Ctt | Ttt | 178 | 178 | AY.9 | 0.012032 |
S | 189 | L189F | Ctt | Ttt | 151 | 151 | B.1 | 0.001383 |
S | 189 | L189F | Ctt | Ttt | 143 | 143 | B.1.258 | 0.009516 |
S | 189 | L189F | Ctt | Ttt | 114 | 114 | B.1.258.5 | 1 |
S | 189 | L189F | Ctt | Ttt | 93 | 93 | AY.4 | 0.000145 |
S | 189 | L189L | ctT | ctC | 48 | 87 | All | 0.000009 |
S | 189 | L189L | ctT | ctG | 20 | 87 | All | 0.000004 |
S | 189 | L189L | ctT | ctA | 18 | 87 | All | 0.000003 |
S | 189 | L189L | CtT | TtA | 1 | 87 | All | 0 |
S | 189 | L189I | Ctt | Att | 74 | 74 | All | 0.000014 |
S | 189 | L189F | Ctt | Ttt | 63 | 63 | B.1.1.432 | 0.079747 |
S | 189 | L189F | Ctt | Ttt | 53 | 53 | B.1.1.7 | 0.000047 |
S | 189 | L189del | CTT | --- | 44 | 44 | B.1.1.7 | 0.000039 |
S | 189 | L189F | Ctt | Ttt | 43 | 43 | B.1.2 | 0.000379 |
S | 189 | L189F | Ctt | Ttt | 41 | 41 | B.1.258.23 | 0.97619 |
S | 189 | L189F | Ctt | Ttt | 31 | 31 | B.1.177 | 0.000408 |
S | 189 | L189F | Ctt | Ttt | 31 | 31 | B.1.609 | 0.014861 |
S | 189 | L189del | CTT | --- | 31 | 31 | P.1 | 0.000488 |
S | 189 | L189F | Ctt | Ttt | 29 | 29 | B.1.617.2 | 0.000109 |
S | 189 | L189F | Ctt | Ttt | 28 | 28 | P.1 | 0.000441 |
S | 189 | L189F | Ctt | Ttt | 25 | 25 | B.1.1 | 0.000454 |
S | 189 | L189F | Ctt | Ttt | 22 | 22 | B.1.311 | 0.006041 |
S | 189 | L189F | Ctt | Ttt | 19 | 19 | B.1.258.24 | 0.204301 |
S | 189 | L189I | Ctt | Att | 16 | 16 | AY.9.1 | 0.00134 |
S | 189 | L189del | CTT | --- | 14 | 14 | AY.43 | 0.000062 |
S | 189 | L189F | Ctt | Ttt | 14 | 14 | AY.44 | 0.000085 |
S | 189 | L189F | Ctt | Ttt | 14 | 14 | B.1.367 | 0.011094 |
S | 189 | L189P | cTt | cCt | 12 | 12 | All | 0.000002 |
S | 189 | L189L | ctT | ctA | 6 | 12 | B.1.1.7 | 0.000005 |
S | 189 | L189L | ctT | ctC | 6 | 12 | B.1.1.7 | 0.000005 |
S | 189 | L189F | Ctt | Ttt | 11 | 11 | AY.43 | 0.000049 |
S | 189 | L189del | CTT | --- | 11 | 11 | B.1.177 | 0.000145 |
S | 189 | L189L | ctT | ctC | 8 | 11 | B.1.2 | 0.00007 |
S | 189 | L189L | ctT | ctG | 2 | 11 | B.1.2 | 0.000018 |
S | 189 | L189L | ctT | ctA | 1 | 11 | B.1.2 | 0.000009 |
S | 189 | L189del | CTT | --- | 10 | 10 | B.1 | 0.000092 |
S | 189 | L189del | CTT | --- | 9 | 9 | AY.4 | 0.000014 |
S | 189 | L189del | CTT | --- | 9 | 9 | P.1.15 | 0.002091 |
S | 189 | L189del | CTT | --- | 8 | 8 | AY.4.5 | 0.00086 |
S | 189 | L189I | Ctt | Att | 8 | 8 | AY.43 | 0.000035 |
S | 189 | L189L | ctT | ctG | 7 | 8 | AY.44 | 0.000043 |
S | 189 | L189L | ctT | ctA | 1 | 8 | AY.44 | 0.000006 |
S | 189 | L189F | Ctt | Ttt | 8 | 8 | B | 0.001022 |
S | 189 | L189F | Ctt | Ttt | 8 | 8 | B.1.1.519 | 0.000318 |
S | 189 | L189R | cTt | cGt | 6 | 7 | All | 0.000001 |
S | 189 | L189R | cTT | cGC | 1 | 7 | All | 0 |
S | 189 | L189L | ctT | ctC | 7 | 7 | B.1.1 | 0.000127 |
S | 189 | L189F | Ctt | Ttt | 7 | 7 | B.4.1 | 0.132075 |
S | 189 | L189F | Ctt | Ttt | 6 | 6 | AE.8 | 0.002934 |
S | 189 | L189S | CTt | TCt | 6 | 6 | All | 0.000001 |
S | 189 | L189del2 | cTT | c-- | 4 | 6 | All | 0.000001 |
S | 189 | L189del2 | CTT | --N | 1 | 6 | All | 0 |
S | 189 | L189del2 | CTt | --t | 1 | 6 | All | 0 |
S | 189 | L189I | Ctt | Att | 6 | 6 | AY.42 | 0.000241 |
S | 189 | L189I | Ctt | Att | 6 | 6 | B.1 | 0.000055 |
S | 189 | L189I | Ctt | Att | 6 | 6 | B.1.1 | 0.000109 |
S | 189 | L189F | Ctt | Ttt | 6 | 6 | B.1.160 | 0.000187 |
S | 189 | L189del | CTT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
S | 189 | L189L | ctT | ctC | 3 | 6 | B.1.617.2 | 0.000011 |
S | 189 | L189L | ctT | ctG | 2 | 6 | B.1.617.2 | 0.000008 |
S | 189 | L189L | ctT | ctA | 1 | 6 | B.1.617.2 | 0.000004 |
S | 189 | L189del | CTT | --- | 6 | 6 | C.37 | 0.000696 |
S | 189 | L189del | CTT | --- | 6 | 6 | P.1.16 | 0.002245 |
S | 189 | L189L | ctT | ctA | 5 | 5 | AZ.1 | 0.004337 |
S | 189 | L189F | Ctt | Ttt | 5 | 5 | B.1.221 | 0.000355 |
S | 189 | L189del | CTT | --- | 5 | 5 | B.1.36 | 0.00073 |
S | 189 | L189F | Ctt | Ttt | 5 | 5 | B.1.375 | 0.004098 |
S | 189 | L189H | cTt | cAt | 4 | 4 | All | 0.000001 |
S | 189 | L189F | Ctt | Ttt | 4 | 4 | AY.103 | 0.000025 |
S | 189 | L189F | Ctt | Ttt | 4 | 4 | AY.42 | 0.000161 |
S | 189 | L189F | Ctt | Ttt | 4 | 4 | AY.8 | 0.002424 |
S | 189 | L189F | Ctt | Ttt | 4 | 4 | AY.95 | 0.003044 |
S | 189 | L189L | ctT | ctC | 4 | 4 | B.1 | 0.000037 |
S | 189 | L189I | Ctt | Att | 4 | 4 | B.1.1.7 | 0.000004 |
S | 189 | L189R | cTt | cGt | 4 | 4 | B.1.1.7 | 0.000004 |
S | 189 | L189F | Ctt | Ttt | 4 | 4 | B.1.177.54 | 0.002426 |
S | 189 | L189F | Ctt | Ttt | 4 | 4 | P.1.12 | 0.001936 |
S | 189 | L189L | ctT | ctA | 1 | 3 | 0.055556 | |
S | 189 | L189L | CtT | TtA | 1 | 3 | 0.055556 | |
S | 189 | L189L | ctT | ctC | 1 | 3 | 0.055556 | |
S | 189 | L189V | Ctt | Gtt | 3 | 3 | All | 0.000001 |
S | 189 | L189C | CTt | TGt | 2 | 3 | All | 0 |
S | 189 | L189C | CTT | TGC | 1 | 3 | All | 0 |
S | 189 | L189del1 | Ctt | -tt | 1 | 3 | All | 0 |
S | 189 | L189del1 | cTt | c-t | 1 | 3 | All | 0 |
S | 189 | L189del1 | ctT | ct- | 1 | 3 | All | 0 |
S | 189 | L189F | Ctt | Ttt | 3 | 3 | AY.13 | 0.000483 |
S | 189 | L189del | CTT | --- | 3 | 3 | AY.25 | 0.000018 |
S | 189 | L189F | Ctt | Ttt | 3 | 3 | AY.41 | 0.000882 |
S | 189 | L189F | Ctt | Ttt | 3 | 3 | AY.98.1 | 0.000145 |
S | 189 | L189L | ctT | ctG | 3 | 3 | B.1.1.464 | 0.004418 |
S | 189 | L189P | cTt | cCt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 189 | L189F | Ctt | Ttt | 3 | 3 | B.1.36.38 | 0.004926 |
S | 189 | L189F | Ctt | Ttt | 3 | 3 | B.1.497 | 0.000944 |
S | 189 | L189I | Ctt | Att | 3 | 3 | B.1.617.2 | 0.000011 |
S | 189 | L189F | Ctt | Ttt | 3 | 3 | P.1.1 | 0.000953 |
S | 189 | L189I | Ctt | Att | 3 | 3 | P.1.14 | 0.000143 |
S | 189 | L189S | CTt | TCt | 2 | 2 | 0.111111 | |
S | 189 | L189F | Ctt | Ttt | 1 | 2 | 0.055556 | |
S | 189 | L189F | CtT | TtC | 1 | 2 | 0.055556 | |
S | 189 | L189del | CTT | --- | 2 | 2 | AY.120 | 0.000074 |
S | 189 | L189I | Ctt | Att | 2 | 2 | AY.23 | 0.000139 |
S | 189 | L189del | CTT | --- | 2 | 2 | AY.29 | 0.000032 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | AY.33 | 0.000134 |
S | 189 | L189I | Ctt | Att | 2 | 2 | AY.33 | 0.000134 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | AY.39 | 0.000049 |
S | 189 | L189I | Ctt | Att | 2 | 2 | AY.4 | 0.000003 |
S | 189 | L189L | ctT | ctC | 1 | 2 | AY.4 | 0.000002 |
S | 189 | L189L | ctT | ctG | 1 | 2 | AY.4 | 0.000002 |
S | 189 | L189L | ctT | ctG | 1 | 2 | AY.4.2 | 0.000022 |
S | 189 | L189L | ctT | ctC | 1 | 2 | AY.4.2 | 0.000022 |
S | 189 | L189del | CTT | --- | 2 | 2 | AY.44 | 0.000012 |
S | 189 | L189del | CTT | --- | 2 | 2 | AY.46.2 | 0.001271 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | AY.5.3 | 0.000675 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | AY.7 | 0.000392 |
S | 189 | L189del | CTT | --- | 2 | 2 | AY.9 | 0.000135 |
S | 189 | L189C | CTt | TGt | 1 | 2 | AY.98 | 0.000079 |
S | 189 | L189C | CTT | TGC | 1 | 2 | AY.98 | 0.000079 |
S | 189 | L189F | CtT | TtC | 1 | 2 | AY.98 | 0.000079 |
S | 189 | L189F | Ctt | Ttt | 1 | 2 | AY.98 | 0.000079 |
S | 189 | L189R | cTT | cGC | 1 | 2 | AY.98 | 0.000079 |
S | 189 | L189R | cTt | cGt | 1 | 2 | AY.98 | 0.000079 |
S | 189 | L189P | cTt | cCt | 2 | 2 | B.1 | 0.000018 |
S | 189 | L189del | CTT | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | B.1.1.220 | 0.003717 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | B.1.1.409 | 0.005666 |
S | 189 | L189del2 | CTt | --t | 1 | 2 | B.1.1.7 | 0.000001 |
S | 189 | L189del2 | cTT | c-- | 1 | 2 | B.1.1.7 | 0.000001 |
S | 189 | L189del | CTT | --- | 2 | 2 | B.1.177.16 | 0.001329 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | B.1.177.73 | 0.001133 |
S | 189 | L189del | CTT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | B.1.36 | 0.000292 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | B.1.36.8 | 0.002 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | B.1.429 | 0.000047 |
S | 189 | L189del | CTT | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | C.37 | 0.000232 |
S | 189 | L189I | Ctt | Att | 2 | 2 | P.1 | 0.000032 |
S | 189 | L189F | Ctt | Ttt | 2 | 2 | P.1.2 | 0.002312 |
S | 189 | L189I | Ctt | Att | 1 | 1 | A | 0.000387 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
S | 189 | L189del | CTT | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 189 | L189L | ctT | ctA | 1 | 1 | AY.10 | 0.00053 |
S | 189 | L189L | ctT | ctC | 1 | 1 | AY.100 | 0.000046 |
S | 189 | L189del | CTT | --- | 1 | 1 | AY.100 | 0.000046 |
S | 189 | L189S | CTt | TCt | 1 | 1 | AY.103 | 0.000006 |
S | 189 | L189I | Ctt | Att | 1 | 1 | AY.103 | 0.000006 |
S | 189 | L189L | ctT | ctC | 1 | 1 | AY.113 | 0.000142 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.116 | 0.000287 |
S | 189 | L189I | Ctt | Att | 1 | 1 | AY.121 | 0.000135 |
S | 189 | L189H | cTt | cAt | 1 | 1 | AY.14 | 0.000088 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.23 | 0.00007 |
S | 189 | L189del | CTT | --- | 1 | 1 | AY.24 | 0.000431 |
S | 189 | L189del2 | CTT | --N | 1 | 1 | AY.25 | 0.000006 |
S | 189 | L189P | cTt | cCt | 1 | 1 | AY.25 | 0.000006 |
S | 189 | L189del | CTT | --- | 1 | 1 | AY.26 | 0.000028 |
S | 189 | L189del | CTT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 189 | L189del1 | Ctt | -tt | 1 | 1 | AY.33 | 0.000067 |
S | 189 | L189L | ctT | ctA | 1 | 1 | AY.33 | 0.000067 |
S | 189 | L189P | cTt | cCt | 1 | 1 | AY.39 | 0.000025 |
S | 189 | L189del2 | cTT | c-- | 1 | 1 | AY.4 | 0.000002 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
S | 189 | L189L | ctT | ctG | 1 | 1 | AY.42 | 0.00004 |
S | 189 | L189C | CTt | TGt | 1 | 1 | AY.44 | 0.000006 |
S | 189 | L189P | cTt | cCt | 1 | 1 | AY.45 | 0.000122 |
S | 189 | L189I | Ctt | Att | 1 | 1 | AY.46 | 0.000104 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
S | 189 | L189I | Ctt | Att | 1 | 1 | AY.46.6 | 0.000072 |
S | 189 | L189L | ctT | ctC | 1 | 1 | AY.46.6 | 0.000072 |
S | 189 | L189del | CTT | --- | 1 | 1 | AY.47 | 0.000031 |
S | 189 | L189I | Ctt | Att | 1 | 1 | AY.5 | 0.000021 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.5 | 0.000021 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.52 | 0.000814 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.54 | 0.000095 |
S | 189 | L189I | Ctt | Att | 1 | 1 | AY.60 | 0.000938 |
S | 189 | L189L | ctT | ctC | 1 | 1 | AY.75 | 0.000056 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.75 | 0.000056 |
S | 189 | L189I | Ctt | Att | 1 | 1 | AY.75 | 0.000056 |
S | 189 | L189P | cTt | cCt | 1 | 1 | AY.75.1 | 0.00018 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
S | 189 | L189L | ctT | ctG | 1 | 1 | AY.85 | 0.000427 |
S | 189 | L189P | cTt | cCt | 1 | 1 | AY.85 | 0.000427 |
S | 189 | L189R | cTt | cGt | 1 | 1 | AY.9 | 0.000068 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
S | 189 | L189del | CTT | --- | 1 | 1 | AY.96 | 0.002075 |
S | 189 | L189L | ctT | ctC | 1 | 1 | AY.98 | 0.000079 |
S | 189 | L189I | Ctt | Att | 1 | 1 | AY.98.1 | 0.000048 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B | 0.000128 |
S | 189 | L189del | CTT | --- | 1 | 1 | B | 0.000128 |
S | 189 | L189I | Ctt | Att | 1 | 1 | B | 0.000128 |
S | 189 | L189S | CTt | TCt | 1 | 1 | B.1 | 0.000009 |
S | 189 | L189H | cTt | cAt | 1 | 1 | B.1 | 0.000009 |
S | 189 | L189V | Ctt | Gtt | 1 | 1 | B.1 | 0.000009 |
S | 189 | L189del1 | ctT | ct- | 1 | 1 | B.1.1.170 | 0.001247 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.1.198 | 0.001468 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.1.263 | 0.001558 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.1.1.28 | 0.000311 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.1.1.316 | 0.000925 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.1.317 | 0.000412 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.1.1.33 | 0.000421 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.1.348 | 0.000796 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.1.445 | 0.037037 |
S | 189 | L189P | cTt | cCt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 189 | L189V | Ctt | Gtt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 189 | L189del1 | cTt | c-t | 1 | 1 | B.1.1.7 | 0.000001 |
S | 189 | L189S | CTt | TCt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.139 | 0.000733 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.157 | 0.002985 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.1.160.22 | 0.006757 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 189 | L189del2 | cTT | c-- | 1 | 1 | B.1.177 | 0.000013 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.1.177 | 0.000013 |
S | 189 | L189del2 | cTT | c-- | 1 | 1 | B.1.177.10 | 0.000878 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.177.33 | 0.001645 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.177.52 | 0.001757 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 189 | L189I | Ctt | Att | 1 | 1 | B.1.221 | 0.000071 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.23 | 0.006061 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.237 | 0.004975 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
S | 189 | L189I | Ctt | Att | 1 | 1 | B.1.301 | 0.005917 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.328 | 0.03125 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.356 | 0.001727 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.36.2 | 0.010753 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.36.26 | 0.002857 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.1.36.8 | 0.001 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.362 | 0.001541 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.1.369 | 0.000285 |
S | 189 | L189S | CTt | TCt | 1 | 1 | B.1.391 | 0.001127 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.391 | 0.001127 |
S | 189 | L189P | cTt | cCt | 1 | 1 | B.1.391 | 0.001127 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 189 | L189L | ctT | ctA | 1 | 1 | B.1.427 | 0.00005 |
S | 189 | L189L | ctT | ctG | 1 | 1 | B.1.429 | 0.000024 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.470 | 0.001404 |
S | 189 | L189H | cTt | cAt | 1 | 1 | B.1.497 | 0.000315 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.524 | 0.001406 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.526 | 0.000024 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.575 | 0.000303 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.590 | 0.004545 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.1.596 | 0.000087 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.599 | 0.00365 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 189 | L189H | cTt | cAt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.619 | 0.000871 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 189 | L189I | Ctt | Att | 1 | 1 | B.1.623 | 0.000536 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.623 | 0.000536 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | B.1.627 | 0.00202 |
S | 189 | L189L | ctT | ctG | 1 | 1 | B.1.630 | 0.005236 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 189 | L189L | ctT | ctC | 1 | 1 | B.31 | 0.003731 |
S | 189 | L189del | CTT | --- | 1 | 1 | B.34 | 0.013699 |
S | 189 | L189I | Ctt | Att | 1 | 1 | B.6 | 0.00091 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | C.13 | 0.025641 |
S | 189 | L189L | ctT | ctC | 1 | 1 | C.35 | 0.000774 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | D.2 | 0.000075 |
S | 189 | L189V | Ctt | Gtt | 1 | 1 | P.1 | 0.000016 |
S | 189 | L189del | CTT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | P.1.15 | 0.000232 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | P.1.16 | 0.000374 |
S | 189 | L189F | Ctt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
S | 189 | L189L | ctT | ctC | 1 | 1 | Q.8 | 0.000165 |
S | 189 | L189del | CTT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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