CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 181 & Codon = ggC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S181G181GsynggAggC442840.19004522103-22105

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S181G181GggAggC84442All0.000016
S181G181GggAggC887B.1.1.70.000007
S181G181GggAggC4042AY.250.000241
S181G181GggAggC525AY.40.000008
S181G181GggAggC214B.1.20.000018
S181G181GggAggC214B.1.617.20.000008
S181G181GggAggC410AY.30.00004
S181G181GggAggC28AY.430.000009
S181G181GggAggC68B.1.3510.000178
S181G181GggAggC17AY.1030.000006
S181G181GggAggC55AY.390.000124
S181G181GggAggC230.111111
S181G181GggAggC22AY.540.000191
S181G181GggAggC22B.1.466.20.000782
S181G181GggAggC11AY.1170.000085
S181G181GggAggC11B.1.1.5180.006329
S181G181GggAggC11B.1.177.40.000211

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.