CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 181 & Codon = gTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S181G181VnonsyngGagTa16974169590.99911622103-22105

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S181G181VgGagTa1695916974All0.003244
S181G181VgGagTa37393739AY.430.016566
S181G181VgGagTa32473247B.1.617.20.012226
S181G181VgGagTa19911991AY.40.003099
S181G181VgGagTa17141723B.1.1.70.001534
S181G181VgGagTa619619B.1.36.220.747585
S181G181VgGagTa389389AY.30.003869
S181G181VgGagTa359359AY.440.002185
S181G181VgGagTa306306B.1.177.650.203593
S181G181VgGagTa302302AY.290.004764
S181G181VgGagTa264264AY.200.01026
S181G181VgGagTa251251AY.390.006203
S181G181VgGagTa228228AY.250.001371
S181G181VgGagTa200200AY.1020.005303
S181G181VgGagTa192192AY.1030.001192
S181G181VgGagTa179179B.1.3510.005321
S181G181VgGagTa111111AY.1190.003919
S181G181VgGagTa110110AY.910.080351
S181G181VgGagTa109109AY.980.00861
S181G181VgGagTa104104P.10.001638
S181G181VgGagTa9595AY.230.006626
S181G181VgGagTa9292B.1.1.2220.018768
S181G181VgGagTa8787B.1.6210.007701
S181G181VgGagTa7979B.1.1770.00104
S181G181VgGagTa7070B.10.000641
S181G181VgGagTa5555AY.340.005333
S181G181VgGagTa5151AY.5.30.017206
S181G181VgGagTa5050B.1.258.170.005199
S181G181VgGagTa4747AY.50.000971
S181G181VgGagTa4646AY.460.004788
S181G181VgGagTa4646B.1.4290.001082
S181G181VgGagTa4545AY.4.20.000976
S181G181VgGagTa4343AY.540.0041
S181G181VgGagTa4041AY.330.002671
S181G181VgGagTa3939AY.46.60.002816
S181G181VgGagTa3939B.1.5260.000917
S181G181VgGagTa3737AY.9.20.001359
S181G181VgGagTa3636AY.1210.004871
S181G181VgGagTa3434AY.1170.002874
S181G181VgGagTa3434B.1.10.000617
S181G181VgGagTa3434B.1.177.120.005158
S181G181VgGagTa3333AY.1110.006044
S181G181VgGagTa3333AY.98.10.001598
S181G181VgGagTa3333Q.10.004169
S181G181VgGagTa3131AY.270.002006
S181G181VgGagTa3030AY.410.008818
S181G181VgGagTa3030AY.450.003651
S181G181VgGagTa3030AY.5.40.008301
S181G181VgGagTa3030B.1.20.000264
S181G181VgGagTa2929AY.750.001625
S181G181VgGagTa2828AY.1080.030871
S181G181VgGagTa2828B.1.1.3180.008449
S181G181VgGagTa2727AY.9.10.002261
S181G181VgGagTa2525C.36.3.10.067935
S181G181VgGagTa2424AY.260.000679
S181G181VgGagTa2323AY.420.000925
S181G181VgGagTa2323B.1.177.580.030626
S181G181VgGagTa2222AY.740.002544
S181G181VgGagTa2222AY.770.024803
S181G181VgGagTa2121AY.60.000864
S181G181VgGagTa2121AY.610.0022
S181G181VgGagTa2121B.1.1600.000655
S181G181VgGagTa2020AY.530.00575
S181G181VgGagTa2020AY.99.20.001843
S181G181VgGagTa1818AY.860.014938
S181G181VgGagTa1818AY.90.001217
S181G181VgGagTa1717B.1.4270.000858
S181G181VgGagTa1515AY.300.005936
S181G181VgGagTa1515B.1.177.210.001147
S181G181VgGagTa1414AY.1000.000644
S181G181VgGagTa1414AY.710.006651
S181G181VgGagTa1414B.1.5170.005978
S181G181VgGagTa1414C.370.001625
S181G181VgGagTa1313AY.1060.004354
S181G181VgGagTa1313AY.1200.000483
S181G181VgGagTa1313AY.360.001927
S181G181VgGagTa1313AY.470.000404
S181G181VgGagTa1313AY.480.006047
S181G181VgGagTa1313AY.830.022414
S181G181VgGagTa1212AY.720.016327
S181G181VgGagTa1212B.1.6370.000877
S181G181VgGagTa1212P.1.140.000574
S181G181VgGagTa1111AY.46.40.00181
S181G181VgGagTa1111AY.840.004812
S181G181VgGagTa1111AY.920.00316
S181G181VgGagTa1111B.1.1.3880.5
S181G181VgGagTa1111B.1.2580.000732
S181G181VgGagTa1010AY.1160.002868
S181G181VgGagTa1010AY.4.50.001075
S181G181VgGagTa1010B.1.1.3330.010764
S181G181VgGagTa1010B.1.2210.00071
S181G181VgGagTa99AY.39.10.000357
S181G181VgGagTa99B.1.5250.001018
S181G181VgGagTa88AY.16.10.003759
S181G181VgGagTa88AY.680.00219
S181G181VgGagTa88AY.70.001568
S181G181VgGagTa88AY.75.10.001442
S181G181VgGagTa88B.1.351.20.002421
S181G181VgGagTa77AY.1130.000997
S181G181VgGagTa77AY.1180.000439
S181G181VgGagTa77AY.780.010786
S181G181VgGagTa77B.1.177.570.001967
S181G181VgGagTa77B.1.617.10.000903
S181G181VgGagTa360.166667
S181G181VgGagTa66AY.1100.000676
S181G181VgGagTa66AY.1140.001387
S181G181VgGagTa66AY.130.000966
S181G181VgGagTa66AY.320.003195
S181G181VgGagTa66AY.700.001251
S181G181VgGagTa66AY.790.007264
S181G181VgGagTa66AY.970.010204
S181G181VgGagTa66B.1.1.280.001867
S181G181VgGagTa66B.1.1.370.001157
S181G181VgGagTa66B.1.177.790.014052
S181G181VgGagTa55AY.20.001781
S181G181VgGagTa55AY.4.2.10.000745
S181G181VgGagTa55AY.620.002179
S181G181VgGagTa55B.1.2320.002687
S181G181VgGagTa55B.1.36.290.002587
S181G181VgGagTa55B.1.36.330.037879
S181G181VgGagTa55B.1.6280.001762
S181G181VgGagTa55P.1.70.001596
S181G181VgGagTa55R.10.00045
S181G181VgGagTa44AY.1090.002959
S181G181VgGagTa44AY.3.10.000341
S181G181VgGagTa44AY.46.20.002541
S181G181VgGagTa44AY.46.50.000794
S181G181VgGagTa44AY.7.20.002237
S181G181VgGagTa44B.1.1.2160.003562
S181G181VgGagTa44B.1.1.3060.001754
S181G181VgGagTa44B.1.1.330.001684
S181G181VgGagTa44B.1.1.5190.000159
S181G181VgGagTa44B.1.1.700.001364
S181G181VgGagTa44B.1.214.20.002398
S181G181VgGagTa44B.1.2390.004884
S181G181VgGagTa44B.1.360.000584
S181G181VgGagTa44B.1.3670.00317
S181G181VgGagTa44P.1.150.000929
S181G181VgGagTa33AE.80.001467
S181G181VgGagTa33AY.10.001187
S181G181VgGagTa33AY.1150.015625
S181G181VgGagTa33AY.120.000948
S181G181VgGagTa33AY.140.000264
S181G181VgGagTa33AY.240.001293
S181G181VgGagTa33AY.4.40.001227
S181G181VgGagTa33AY.46.10.00308
S181G181VgGagTa33AY.560.004815
S181G181VgGagTa33AY.580.002722
S181G181VgGagTa33AY.630.001161
S181G181VgGagTa33AY.670.001393
S181G181VgGagTa33AY.7.10.000338
S181G181VgGagTa23AY.850.000854
S181G181VgGagTa33AY.880.002653
S181G181VgGagTa33AY.890.014706
S181G181VgGagTa33AY.930.000819
S181G181VgGagTa33B0.000383
S181G181VgGagTa33B.1.1.500.002037
S181G181VgGagTa33B.1.177.40.000633
S181G181VgGagTa33B.1.2340.000396
S181G181VgGagTa33B.1.2430.000209
S181G181VgGagTa33B.1.36.170.001482
S181G181VgGagTa33B.1.4040.003906
S181G181VgGagTa33B.1.4480.007874
S181G181VgGagTa33C.360.002732
S181G181VgGagTa33Q.20.00184
S181G181VgGagTa33Q.80.000495
S181G181VgGagTa22AY.100.00106
S181G181VgGagTa22AY.1050.001286
S181G181VgGagTa22AY.160.000759
S181G181VgGagTa22AY.29.10.000441
S181G181VgGagTa22AY.350.000466
S181G181VgGagTa22AY.370.000632
S181G181VgGagTa22AY.4.30.001684
S181G181VgGagTa22AY.550.001835
S181G181VgGagTa22AY.640.00119
S181G181VgGagTa22AY.870.001665
S181G181VgGagTa22AY.990.002099
S181G181VgGagTa12AY.99.10.001553
S181G181VgGagTa22B.1.1.1530.002191
S181G181VgGagTa22B.1.1.1920.004619
S181G181VgGagTa22B.1.1.2840.000215
S181G181VgGagTa22B.1.1.3050.007722
S181G181VgGagTa22B.1.1.3260.003521
S181G181VgGagTa22B.1.1.390.001019
S181G181VgGagTa22B.1.1.580.010753
S181G181VgGagTa22B.1.1.630.000772
S181G181VgGagTa22B.1.177.630.005405
S181G181VgGagTa22B.1.177.750.002081
S181G181VgGagTa22B.1.177.80.001505
S181G181VgGagTa22B.1.36.180.00084
S181G181VgGagTa22B.1.4690.00722
S181G181VgGagTa22B.1.5610.000794
S181G181VgGagTa22B.1.5640.000852
S181G181VgGagTa22B.1.5750.000607
S181G181VgGagTa22B.1.5960.000174
S181G181VgGagTa22B.1.80.003945
S181G181VgGagTa22N.50.003534
S181G181VgGagTa22Q.30.00029
S181G181VgGagTa11A0.000387
S181G181VgGagTa11A.20.000662
S181G181VgGagTa11A.2.40.003367
S181G181VgGagTa11AD.20.000219
S181G181VgGagTa11AY.1010.00049
S181G181VgGagTa11AY.116.10.000311
S181G181VgGagTa11AY.120.2.10.000498
S181G181VgGagTa11AY.180.010101
S181G181VgGagTa11AY.210.001898
S181G181VgGagTa11AY.220.002092
S181G181VgGagTa11AY.380.000499
S181G181VgGagTa11AY.39.1.10.000725
S181G181VgGagTa11AY.46.30.000934
S181G181VgGagTa11AY.520.000814
S181G181VgGagTa11AY.590.00053
S181G181VgGagTa11AY.600.000938
S181G181VgGagTa11AY.690.000187
S181G181VgGagTa11AY.730.000665
S181G181VgGagTa11AY.80.000606
S181G181VgGagTa11AY.810.001992
S181G181VgGagTa11AY.820.001357
S181G181VgGagTa11AY.900.000684
S181G181VgGagTa11AY.91.10.004065
S181G181VgGagTa11AY.940.000443
S181G181VgGagTa11AY.960.002075
S181G181VgGagTa11AZ.20.000821
S181G181VgGagTa11B.1.1.1570.000913
S181G181VgGagTa11B.1.1.1740.003378
S181G181VgGagTa11B.1.1.2200.001859
S181G181VgGagTa11B.1.1.3110.000358
S181G181VgGagTa11B.1.1.3170.000412
S181G181VgGagTa11B.1.1.3720.000689
S181G181VgGagTa11B.1.1.3770.001381
S181G181VgGagTa11B.1.1.3850.004464
S181G181VgGagTa11B.1.1.4320.001266
S181G181VgGagTa11B.1.1.4340.000349
S181G181VgGagTa11B.1.1.4420.018519
S181G181VgGagTa11B.1.1.520.012195
S181G181VgGagTa11B.1.1470.000756
S181G181VgGagTa11B.1.160.160.000929
S181G181VgGagTa11B.1.160.80.001289
S181G181VgGagTa11B.1.177.450.000381
S181G181VgGagTa11B.1.177.530.002392
S181G181VgGagTa11B.1.177.560.000668
S181G181VgGagTa11B.1.177.70.000165
S181G181VgGagTa11B.1.177.730.000566
S181G181VgGagTa11B.1.177.850.005435
S181G181VgGagTa11B.1.177.870.000728
S181G181VgGagTa11B.1.258.190.007092
S181G181VgGagTa11B.1.2650.001271
S181G181VgGagTa11B.1.3050.002151
S181G181VgGagTa11B.1.3110.000275
S181G181VgGagTa11B.1.3200.001245
S181G181VgGagTa11B.1.36.100.004785
S181G181VgGagTa11B.1.36.160.001425
S181G181VgGagTa11B.1.36.20.010753
S181G181VgGagTa11B.1.36.200.016949
S181G181VgGagTa11B.1.36.230.016393
S181G181VgGagTa11B.1.3660.004878
S181G181VgGagTa11B.1.3750.00082
S181G181VgGagTa11B.1.3910.001127
S181G181VgGagTa11B.1.3960.000706
S181G181VgGagTa11B.1.4000.000429
S181G181VgGagTa11B.1.4090.000781
S181G181VgGagTa11B.1.4250.002994
S181G181VgGagTa11B.1.4800.002488
S181G181VgGagTa11B.1.4990.00105
S181G181VgGagTa11B.1.5030.002488
S181G181VgGagTa11B.1.5130.013889
S181G181VgGagTa11B.1.5240.001406
S181G181VgGagTa11B.1.5400.009709
S181G181VgGagTa11B.1.5820.000491
S181G181VgGagTa11B.1.6050.005952
S181G181VgGagTa11B.1.617.30.002985
S181G181VgGagTa11B.1.619.10.000641
S181G181VgGagTa11B.1.6200.000946
S181G181VgGagTa11B.1.621.10.000506
S181G181VgGagTa11B.1.6360.006711
S181G181VgGagTa11B.1.780.008547
S181G181VgGagTa11B.1.930.000934
S181G181VgGagTa11B.350.007812
S181G181VgGagTa11C.350.000774
S181G181VgGagTa11C.37.10.002618
S181G181VgGagTa11D.20.000075
S181G181VgGagTa11P.1.100.000269
S181G181VgGagTa11P.1.120.000484
S181G181VgGagTa11V.10.022727

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.