CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 181 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S181G181deldelGGA---195195122103-22105

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S181G181delGGA---195195All0.000037
S181G181delGGA---3939B.1.1.70.000035
S181G181delGGA---1818AY.430.00008
S181G181delGGA---1212P.1.150.002788
S181G181delGGA---1010B.10.000092
S181G181delGGA---1010B.1.1770.000132
S181G181delGGA---99AY.40.000014
S181G181delGGA---99C.370.001045
S181G181delGGA---88P.10.000126
S181G181delGGA---77AY.4.50.000752
S181G181delGGA---55AY.250.00003
S181G181delGGA---55B.1.617.20.000019
S181G181delGGA---44B.1.10.000073
S181G181delGGA---33B.1.6210.000266
S181G181delGGA---33P.1.70.000958
S181G181delGGA---22AY.1200.000074
S181G181delGGA---22AY.290.000032
S181G181delGGA---22AY.440.000012
S181G181delGGA---22B.1.1600.000062
S181G181delGGA---22B.1.20.000018
S181G181delGGA---22B.1.2580.000133
S181G181delGGA---11A.2.50.000499
S181G181delGGA---11AY.1000.000046
S181G181delGGA---11AY.1020.000027
S181G181delGGA---11AY.1180.000063
S181G181delGGA---11AY.1210.000135
S181G181delGGA---11AY.190.00114
S181G181delGGA---11AY.240.000431
S181G181delGGA---11AY.270.000065
S181G181delGGA---11AY.30.00001
S181G181delGGA---11AY.330.000067
S181G181delGGA---11AY.390.000025
S181G181delGGA---11AY.420.00004
S181G181delGGA---11AY.46.20.000635
S181G181delGGA---11AY.470.000031
S181G181delGGA---11AY.50.000021
S181G181delGGA---11AY.60.000041
S181G181delGGA---11AY.7.20.000559
S181G181delGGA---11AY.850.000427
S181G181delGGA---11AY.90.000068
S181G181delGGA---11B0.000128
S181G181delGGA---11B.1.1.3150.008475
S181G181delGGA---11B.1.1.700.000341
S181G181delGGA---11B.1.1400.018868
S181G181delGGA---11B.1.160.230.004831
S181G181delGGA---11B.1.177.100.000878
S181G181delGGA---11B.1.177.160.000664
S181G181delGGA---11B.1.177.180.00116
S181G181delGGA---11B.1.177.40.000211
S181G181delGGA---11B.1.177.620.001192
S181G181delGGA---11B.1.2180.005155
S181G181delGGA---11B.1.258.30.001675
S181G181delGGA---11B.1.36.180.00042
S181G181delGGA---11B.1.4090.000781
S181G181delGGA---11B.1.4270.00005
S181G181delGGA---11B.1.5610.000397
S181G181delGGA---11B.1.617.10.000129
S181G181delGGA---11B.1.6200.000946
S181G181delGGA---11B.1.621.10.000506
S181G181delGGA---11B.1.6380.052632
S181G181delGGA---11B.340.013699
S181G181delGGA---11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.