CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 180 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S180E180deldelGAA---204204122100-22102

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S180E180delGAA---204204All0.000039
S180E180delGAA---4040B.1.1.70.000036
S180E180delGAA---1919AY.430.000084
S180E180delGAA---1212P.1.150.002788
S180E180delGAA---1010B.1.1770.000132
S180E180delGAA---1010C.370.001161
S180E180delGAA---99AY.40.000014
S180E180delGAA---99B.10.000082
S180E180delGAA---88AY.4.50.00086
S180E180delGAA---88P.10.000126
S180E180delGAA---77B.1.617.20.000026
S180E180delGAA---55AY.250.00003
S180E180delGAA---44B.1.10.000073
S180E180delGAA---33B.1.20.000026
S180E180delGAA---33P.1.70.000958
S180E180delGAA---22AY.1020.000053
S180E180delGAA---22AY.1200.000074
S180E180delGAA---22AY.290.000032
S180E180delGAA---22AY.440.000012
S180E180delGAA---22B.1.1.3150.016949
S180E180delGAA---22B.1.1600.000062
S180E180delGAA---22B.1.177.40.000422
S180E180delGAA---22B.1.6210.000177
S180E180delGAA---11A0.000387
S180E180delGAA---11A.2.50.000499
S180E180delGAA---11AY.1000.000046
S180E180delGAA---11AY.1180.000063
S180E180delGAA---11AY.1210.000135
S180E180delGAA---11AY.190.00114
S180E180delGAA---11AY.240.000431
S180E180delGAA---11AY.30.00001
S180E180delGAA---11AY.330.000067
S180E180delGAA---11AY.390.000025
S180E180delGAA---11AY.420.00004
S180E180delGAA---11AY.46.20.000635
S180E180delGAA---11AY.470.000031
S180E180delGAA---11AY.50.000021
S180E180delGAA---11AY.60.000041
S180E180delGAA---11AY.7.20.000559
S180E180delGAA---11AY.710.000475
S180E180delGAA---11AY.850.000427
S180E180delGAA---11AY.90.000068
S180E180delGAA---11B0.000128
S180E180delGAA---11B.1.1.700.000341
S180E180delGAA---11B.1.1400.018868
S180E180delGAA---11B.1.160.230.004831
S180E180delGAA---11B.1.177.100.000878
S180E180delGAA---11B.1.177.160.000664
S180E180delGAA---11B.1.177.180.00116
S180E180delGAA---11B.1.177.620.001192
S180E180delGAA---11B.1.2180.005155
S180E180delGAA---11B.1.2580.000067
S180E180delGAA---11B.1.258.30.001675
S180E180delGAA---11B.1.36.180.00042
S180E180delGAA---11B.1.4090.000781
S180E180delGAA---11B.1.4270.00005
S180E180delGAA---11B.1.5250.000113
S180E180delGAA---11B.1.5610.000397
S180E180delGAA---11B.1.617.10.000129
S180E180delGAA---11B.1.6200.000946
S180E180delGAA---11B.1.621.10.000506
S180E180delGAA---11B.1.6380.052632
S180E180delGAA---11B.340.013699
S180E180delGAA---11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.