CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 177

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S177M177InonsynatGatA804433370.41484322091-22093
S177M177InonsynatGatT804425090.31190922091-22093
S177M177InonsynatGatC804421980.27324722091-22093
S177M177TnonsynaTgaCg6226160.99035422091-22093
S177M177TnonsynaTGaCA62230.0048231522091-22093
S177M177TnonsynaTGaCC62230.0048231522091-22093
S177M177VnonsynAtgGtg4364350.99770622091-22093
S177M177VnonsynAtGGtA43610.0022935822091-22093
S177M177deldelATG---193193122091-22093
S177M177KnonsynaTgaAg133133122091-22093
S177M177LnonsynAtgTtg103950.9223322091-22093
S177M177LnonsynAtgCtg10370.067961222091-22093
S177M177LnonsynAtGTtA10310.0097087422091-22093
S177M177RnonsynaTgaGg2424122091-22093
S177M177del1delatGat-18140.77777822091-22093
S177M177del1delAtg-tg1820.11111122091-22093
S177M177del1delaTga-g1810.055555622091-22093
S177M177del1delAtG-tN1810.055555622091-22093
S177M177del2delaTGa--1190.81818222091-22093
S177M177del2delATg--g1110.090909122091-22093
S177M177del2delATG--T1110.090909122091-22093
S177M177NnonsynaTGaAT11122091-22093
S177M177WnonsynATgTGg11122091-22093

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S177M177IatGatA33378044All0.000638
S177M177IatGatT25098044All0.00048
S177M177IatGatC21988044All0.00042
S177M177IatGatA26592694AY.30.026447
S177M177IatGatC192694AY.30.000189
S177M177IatGatT162694AY.30.000159
S177M177IatGatT12041209AY.260.034085
S177M177IatGatC41209AY.260.000113
S177M177IatGatA11209AY.260.000028
S177M177IatGatC6201007B.1.1.70.000555
S177M177IatGatT2961007B.1.1.70.000265
S177M177IatGatA911007B.1.1.70.000081
S177M177TaTgaCg616622All0.000118
S177M177TaTGaCC3622All0.000001
S177M177TaTGaCA3622All0.000001
S177M177VAtgGtg435436All0.000083
S177M177VAtGGtA1436All0
S177M177IatGatT145293AY.250.000872
S177M177IatGatA139293AY.250.000836
S177M177IatGatC9293AY.250.000054
S177M177IatGatC140278AY.40.000218
S177M177IatGatT105278AY.40.000163
S177M177IatGatA33278AY.40.000051
S177M177IatGatC173270B.1.20.001523
S177M177IatGatT80270B.1.20.000704
S177M177IatGatA17270B.1.20.00015
S177M177IatGatC230231B.1.5960.020042
S177M177IatGatT1231B.1.5960.000087
S177M177IatGatC110226B.1.617.20.000414
S177M177IatGatA93226B.1.617.20.00035
S177M177IatGatT23226B.1.617.20.000087
S177M177TaTgaCg201201Q.70.223333
S177M177delATG---193193All0.000037
S177M177IatGatT152154AY.60.006252
S177M177IatGatA1154AY.60.000041
S177M177IatGatC1154AY.60.000041
S177M177IatGatT88150AY.440.000536
S177M177IatGatC52150AY.440.000317
S177M177IatGatA10150AY.440.000061
S177M177IatGatC146146Q.30.021175
S177M177KaTgaAg133133All0.000025
S177M177IatGatC129129AY.220.269874
S177M177LAtgTtg95103All0.000018
S177M177LAtgCtg7103All0.000001
S177M177LAtGTtA1103All0
S177M177TaTgaCg9090AY.40.00014
S177M177IatGatC8082B.1.6210.007082
S177M177IatGatT282B.1.6210.000177
S177M177LAtgTtg7981B.1.1.70.000071
S177M177LAtgCtg281B.1.1.70.000002
S177M177IatGatT6277AY.1030.000385
S177M177IatGatC1277AY.1030.000075
S177M177IatGatA377AY.1030.000019
S177M177IatGatC6668AY.1000.003036
S177M177IatGatA168AY.1000.000046
S177M177IatGatT168AY.1000.000046
S177M177IatGatT6064AY.4.20.001301
S177M177IatGatC464AY.4.20.000087
S177M177TaTgaCg6162B.1.1.70.000055
S177M177TaTGaCA162B.1.1.70.000001
S177M177IatGatC5960B.1.1770.000777
S177M177IatGatT160B.1.1770.000013
S177M177VAtgGtg5858B.1.617.20.000218
S177M177VAtgGtg4141B.1.1.70.000037
S177M177VAtgGtg4040AY.40.000062
S177M177VAtgGtg3939AY.430.000173
S177M177IatGatT2239AY.430.000097
S177M177IatGatC939AY.430.00004
S177M177IatGatA839AY.430.000035
S177M177IatGatC2837B.10.000256
S177M177IatGatT837B.10.000073
S177M177IatGatA137B.10.000009
S177M177IatGatA1436AY.1020.000371
S177M177IatGatC1336AY.1020.000345
S177M177IatGatT936AY.1020.000239
S177M177IatGatA3535B.1.258.150.660377
S177M177KaTgaAg2929AY.430.000128
S177M177IatGatA2828B.1.1.1680.736842
S177M177delATG---2828B.1.1.70.000025
S177M177IatGatC2328B.1.5260.000541
S177M177IatGatT428B.1.5260.000094
S177M177IatGatA128B.1.5260.000024
S177M177IatGatT1428P.10.000221
S177M177IatGatA828P.10.000126
S177M177IatGatC628P.10.000095
S177M177TaTgaCg2525AY.440.000152
S177M177RaTgaGg2424All0.000005
S177M177IatGatC1724AY.1130.002421
S177M177IatGatT724AY.1130.000997
S177M177VAtgGtg2424AY.440.000146
S177M177IatGatT2323B.1.1310.201754
S177M177VAtgGtg1919AY.1030.000118
S177M177delATG---1919AY.430.000084
S177M177del1atGat-1418All0.000003
S177M177del1Atg-tg218All0
S177M177del1aTga-g118All0
S177M177del1AtG-tN118All0
S177M177IatGatA1718AY.920.004884
S177M177IatGatT118AY.920.000287
S177M177TaTgaCg1818B.10.000165
S177M177TaTgaCg1818B.1.617.20.000068
S177M177IatGatC1217P.1.150.002788
S177M177IatGatA517P.1.150.001162
S177M177TaTgaCg1616AY.750.000896
S177M177TaTgaCg1616B.1.4290.000376
S177M177VAtgGtg1515AY.1200.000558
S177M177IatGatA815B.1.10.000145
S177M177IatGatC515B.1.10.000091
S177M177IatGatT215B.1.10.000036
S177M177KaTgaAg1515B.1.1.70.000013
S177M177IatGatT1515B.1.3050.032258
S177M177IatGatC1414AZ.30.021277
S177M177VAtgGtg1414B.1.20.000123
S177M177IatGatA1214P.1.10.003812
S177M177IatGatT214P.1.10.000635
S177M177delATG---1414P.1.150.003253
S177M177delATG---1313AY.40.00002
S177M177TaTgaCg1313B.1.177.810.002461
S177M177IatGatT813B.1.4290.000188
S177M177IatGatC513B.1.4290.000118
S177M177IatGatA912AY.1170.000761
S177M177IatGatC312AY.1170.000254
S177M177TaTgaCg1212AY.1190.000424
S177M177IatGatA912AY.1190.000318
S177M177IatGatC212AY.1190.000071
S177M177IatGatT112AY.1190.000035
S177M177IatGatA612B.1.1600.000187
S177M177IatGatT612B.1.1600.000187
S177M177KaTgaAg1212B.1.6280.004228
S177M177IatGatC1212Q.10.001516
S177M177del2aTGa--911All0.000002
S177M177del2ATG--T111All0
S177M177del2ATg--g111All0
S177M177IatGatA1011AY.340.00097
S177M177IatGatC111AY.340.000097
S177M177VAtgGtg1111AY.390.000272
S177M177IatGatT711AY.390.000173
S177M177IatGatC311AY.390.000074
S177M177IatGatA111AY.390.000025
S177M177TaTgaCg1111AY.540.001049
S177M177IatGatA1011AY.840.004374
S177M177IatGatT111AY.840.000437
S177M177IatGatC811AY.98.10.000387
S177M177IatGatT311AY.98.10.000145
S177M177IatGatT911B.1.1.2430.036735
S177M177IatGatC211B.1.1.2430.008163
S177M177delATG---1111P.10.000173
S177M177VAtgGtg1010AY.260.000283
S177M177IatGatA510AY.290.000079
S177M177IatGatC510AY.290.000079
S177M177TaTgaCg1010AY.430.000044
S177M177IatGatT410AY.50.000083
S177M177IatGatA410AY.50.000083
S177M177IatGatC210AY.50.000041
S177M177VAtgGtg1010B.1.1600.000312
S177M177IatGatC610B.1.2430.000418
S177M177IatGatT410B.1.2430.000278
S177M177IatGatA1010B.1.2770.238095
S177M177VAtgGtg1010B.1.617.10.00129
S177M177IatGatA99AY.530.002588
S177M177IatGatC79B0.000895
S177M177IatGatT19B0.000128
S177M177IatGatA19B0.000128
S177M177VAtgGtg99B.10.000082
S177M177delATG---99B.10.000082
S177M177VAtgGtg99B.1.1.2220.001836
S177M177IatGatC59B.1.2580.000333
S177M177IatGatT49B.1.2580.000266
S177M177IatGatT59B.1.3510.000149
S177M177IatGatC49B.1.3510.000119
S177M177IatGatA48AY.420.000161
S177M177IatGatT38AY.420.000121
S177M177IatGatC18AY.420.00004
S177M177delATG---88B.1.1770.000105
S177M177IatGatC78B.1.2210.000497
S177M177IatGatT18B.1.2210.000071
S177M177delATG---88C.370.000929
S177M177IatGatT88P.1.160.002993
S177M177IatGatA37AY.130.000483
S177M177IatGatC27AY.130.000322
S177M177IatGatT27AY.130.000322
S177M177IatGatT37AY.200.000117
S177M177IatGatC37AY.200.000117
S177M177IatGatA17AY.200.000039
S177M177KaTgaAg77AY.4.50.000752
S177M177TaTgaCg77B.1.20.000062
S177M177IatGatA66AY.1050.003859
S177M177VAtgGtg66AY.250.000036
S177M177VAtgGtg66AY.30.00006
S177M177delATG---66AY.4.50.000645
S177M177KaTgaAg66AY.440.000037
S177M177IatGatA46AY.470.000124
S177M177IatGatT26AY.470.000062
S177M177VAtgGtg66AY.5.40.00166
S177M177IatGatA66AY.570.003937
S177M177IatGatC56B.1.1.5190.000199
S177M177IatGatT16B.1.1.5190.00004
S177M177del2aTGa--56B.1.1.70.000004
S177M177del1atGat-56B.1.1.70.000004
S177M177del1aTga-g16B.1.1.70.000001
S177M177del2ATG--T16B.1.1.70.000001
S177M177IatGatC66B.1.177.200.009105
S177M177IatGatC66B.1.3490.004289
S177M177KaTgaAg66B.1.617.20.000023
S177M177delATG---66B.1.617.20.000023
S177M177IatGatC46P.1.140.000191
S177M177IatGatA26P.1.140.000096
S177M177IatGatA45AY.230.000279
S177M177IatGatT15AY.230.00007
S177M177TaTgaCg55AY.250.00003
S177M177delATG---55AY.250.00003
S177M177TaTgaCg55AY.30.00005
S177M177VAtgGtg55AY.420.000201
S177M177VAtgGtg55AY.460.00052
S177M177IatGatC55AY.46.60.000361
S177M177TaTgaCg55AY.590.002648
S177M177TaTgaCg55AY.60.000206
S177M177VAtgGtg55AY.750.00028
S177M177TaTgaCg55AY.98.10.000242
S177M177TaTgaCg55B.1.10.000091
S177M177KaTgaAg55B.1.10.000091
S177M177IatGatC55B.1.1.1700.006234
S177M177TaTGaCC35B.1.5960.000261
S177M177TaTgaCg25B.1.5960.000174
S177M177IatGatT35B.400.001093
S177M177IatGatA25B.400.000729
S177M177IatGatA55C.36.30.002836
S177M177IatGatT45D.20.0003
S177M177IatGatA15D.20.000075
S177M177VAtgGtg55P.10.000079
S177M177IatGatT240.111111
S177M177IatGatC240.111111
S177M177RaTgaGg44AY.1020.000106
S177M177TaTgaCg44AY.1100.000451
S177M177IatGatC44AY.140.000352
S177M177VAtgGtg44AY.230.000279
S177M177IatGatA24AY.270.000129
S177M177IatGatT14AY.270.000065
S177M177IatGatC14AY.270.000065
S177M177LAtgTtg44AY.30.00004
S177M177TaTgaCg44AY.3.10.000341
S177M177del1atGat-34AY.40.000005
S177M177del1AtG-tN14AY.40.000002
S177M177KaTgaAg44AY.4.40.001637
S177M177delATG---44AY.440.000024
S177M177IatGatT24AY.450.000243
S177M177IatGatC14AY.450.000122
S177M177IatGatA14AY.450.000122
S177M177IatGatA24AY.610.00021
S177M177IatGatC14AY.610.000105
S177M177IatGatT14AY.610.000105
S177M177IatGatC34AY.90.000203
S177M177IatGatT14AY.90.000068
S177M177IatGatA34AY.910.002191
S177M177IatGatC14AY.910.00073
S177M177delATG---44B.1.10.000073
S177M177IatGatT44B.1.1.2190.02
S177M177IatGatC44B.1.177.170.003284
S177M177IatGatA44B.1.177.690.005935
S177M177KaTgaAg44B.1.258.170.000416
S177M177IatGatC44B.1.3670.00317
S177M177IatGatT44B.1.4040.005208
S177M177IatGatC24B.1.5250.000226
S177M177IatGatT24B.1.5250.000226
S177M177RaTgaGg44B.1.617.20.000015
S177M177VAtgGtg44B.1.6210.000354
S177M177IatGatA24Q.80.00033
S177M177IatGatT24Q.80.00033
S177M177TaTgaCg33A.2.5.20.004717
S177M177IatGatT23AE.80.000978
S177M177IatGatC13AE.80.000489
S177M177KaTgaAg33AY.1030.000019
S177M177IatGatT33AY.1040.005952
S177M177VAtgGtg33AY.120.000948
S177M177VAtgGtg33AY.200.000117
S177M177TaTgaCg33AY.200.000117
S177M177RaTgaGg33AY.390.000074
S177M177IatGatC33AY.39.10.000119
S177M177RaTgaGg33AY.40.000005
S177M177TaTgaCg33AY.460.000312
S177M177IatGatC33AY.460.000312
S177M177VAtgGtg33AY.50.000062
S177M177IatGatC33AY.680.000821
S177M177IatGatA23AY.880.001768
S177M177IatGatC13AY.880.000884
S177M177VAtgGtg33AY.9.20.00011
S177M177KaTgaAg33B.10.000027
S177M177VAtgGtg33B.1.10.000054
S177M177IatGatT23B.1.1.10.000653
S177M177IatGatC13B.1.1.10.000327
S177M177KaTgaAg33B.1.177.210.000229
S177M177IatGatT23B.1.177.40.000422
S177M177IatGatA13B.1.177.40.000211
S177M177IatGatC23B.1.2340.000264
S177M177IatGatT13B.1.2340.000132
S177M177TaTgaCg33B.1.2580.0002
S177M177KaTgaAg33B.1.3510.000089
S177M177IatGatC23B.1.3970.009709
S177M177IatGatT13B.1.3970.004854
S177M177RaTgaGg33B.1.4270.000151
S177M177IatGatC23B.1.5950.000522
S177M177IatGatT13B.1.5950.000261
S177M177VAtgGtg33B.1.621.10.001517
S177M177KaTgaAg33B.1.6360.020134
S177M177VAtgGtg33B.1.6370.000219
S177M177IatGatT33C.370.000348
S177M177IatGatT33C.60.111111
S177M177VAtgGtg33P.1.140.000143
S177M177VAtgGtg23P.1.150.000465
S177M177VAtGGtA13P.1.150.000232
S177M177TaTgaCg33P.1.170.000485
S177M177delATG---33P.1.70.000958
S177M177IatGatT22A.2.50.000998
S177M177VAtgGtg22AY.1000.000092
S177M177TaTgaCg22AY.1020.000053
S177M177delATG---22AY.1020.000053
S177M177TaTgaCg22AY.1030.000012
S177M177IatGatA22AY.1180.000125
S177M177VAtgGtg22AY.1190.000071
S177M177delATG---22AY.1200.000074
S177M177TaTgaCg22AY.1200.000074
S177M177VAtgGtg22AY.120.2.10.000997
S177M177IatGatT22AY.1210.000271
S177M177TaTgaCg22AY.220.004184
S177M177KaTgaAg22AY.230.000139
S177M177LAtgTtg22AY.230.000139
S177M177delATG---22AY.230.000139
S177M177IatGatC12AY.23.10.000417
S177M177IatGatT12AY.23.10.000417
S177M177KaTgaAg22AY.250.000012
S177M177LAtgTtg22AY.260.000057
S177M177VAtgGtg22AY.290.000032
S177M177delATG---22AY.290.000032
S177M177IatGatC22AY.330.000134
S177M177delATG---22AY.330.000134
S177M177VAtgGtg22AY.330.000134
S177M177VAtgGtg22AY.360.000296
S177M177KaTgaAg22AY.40.000003
S177M177LAtgTtg12AY.40.000002
S177M177LAtgCtg12AY.40.000002
S177M177IatGatT12AY.5.30.000337
S177M177IatGatA12AY.5.30.000337
S177M177KaTgaAg22AY.530.000575
S177M177VAtgGtg22AY.600.001876
S177M177IatGatC22AY.690.000373
S177M177IatGatC22AY.750.000112
S177M177IatGatT22AY.75.10.000361
S177M177VAtgGtg22AY.790.002421
S177M177IatGatA12AY.930.000273
S177M177IatGatT12AY.930.000273
S177M177IatGatA22AY.960.004149
S177M177VAtgGtg22AY.98.10.000097
S177M177KaTgaAg22AY.99.20.000184
S177M177IatGatC22AZ.50.007018
S177M177LAtgCtg22B.10.000018
S177M177RaTgaGg22B.10.000018
S177M177IatGatT22B.1.1.1280.014184
S177M177IatGatC22B.1.1.2160.001781
S177M177IatGatC22B.1.1.2410.004141
S177M177IatGatC22B.1.1.250.001137
S177M177delATG---22B.1.1.3150.016949
S177M177IatGatT12B.1.1.3180.000302
S177M177IatGatC12B.1.1.3180.000302
S177M177IatGatT22B.1.1.3290.007692
S177M177IatGatC22B.1.1.4130.013793
S177M177delATG---22B.1.1600.000062
S177M177TaTgaCg22B.1.1770.000026
S177M177IatGatT22B.1.177.550.004662
S177M177IatGatC22B.1.177.820.000955
S177M177delATG---22B.1.20.000018
S177M177TaTgaCg22B.1.221.30.001667
S177M177IatGatA22B.1.36.180.00084
S177M177VAtgGtg22B.1.36.270.001527
S177M177TaTgaCg22B.1.3960.001411
S177M177IatGatT12B.1.4200.010417
S177M177IatGatC12B.1.4200.010417
S177M177KaTgaAg22B.1.4270.000101
S177M177IatGatT12B.1.4270.00005
S177M177IatGatC12B.1.4270.00005
S177M177VAtgGtg22B.1.4290.000047
S177M177TaTgaCg22B.1.4660.046512
S177M177IatGatT12B.1.466.20.000391
S177M177IatGatC12B.1.466.20.000391
S177M177TaTgaCg22B.1.4690.00722
S177M177IatGatC22B.1.5800.00813
S177M177IatGatC22B.1.617.10.000258
S177M177TaTgaCg12B.1.617.10.000129
S177M177TaTGaCA12B.1.617.10.000129
S177M177delATG---22B.1.6210.000177
S177M177IatGatC12B.1.6230.000536
S177M177IatGatT12B.1.6230.000536
S177M177IatGatT22B.4.20.133333
S177M177IatGatA12N.50.001767
S177M177IatGatC12N.50.001767
S177M177VAtgGtg22P.1.130.001797
S177M177LAtgTtg22P.1.170.000324
S177M177IatGatC12P.1.170.000162
S177M177IatGatT12P.1.170.000162
S177M177IatGatA12P.20.000187
S177M177IatGatT12P.20.000187
S177M177TaTgaCg22Q.30.00029
S177M177IatGatT12Q.40.000455
S177M177IatGatC12Q.40.000455
S177M177TaTgaCg22Q.80.00033
S177M177KaTgaAg110.055556
S177M177NaTGaAT110.055556
S177M177IatGatT11A.180.05
S177M177RaTgaGg11A.190.009434
S177M177RaTgaGg11A.20.000662
S177M177TaTgaCg11A.2.40.003367
S177M177VAtgGtg11A.2.50.000499
S177M177delATG---11A.2.50.000499
S177M177VAtgGtg11A.2.5.10.004808
S177M177IatGatA11A.30.002096
S177M177VAtgGtg11AA.30.027027
S177M177IatGatC11AD.20.000219
S177M177WATgTGg11All0
S177M177NaTGaAT11All0
S177M177LAtgTtg11AY.1000.000046
S177M177delATG---11AY.1000.000046
S177M177IatGatC11AY.1010.00049
S177M177VAtgGtg11AY.1020.000027
S177M177TaTgaCg11AY.1040.001984
S177M177TaTgaCg11AY.1050.000643
S177M177TaTgaCg11AY.1110.000183
S177M177IatGatT11AY.1110.000183
S177M177VAtgGtg11AY.1130.000142
S177M177TaTgaCg11AY.1170.000085
S177M177VAtgGtg11AY.1170.000085
S177M177delATG---11AY.1180.000063
S177M177LAtGTtA11AY.1190.000035
S177M177TaTgaCg11AY.120.000316
S177M177IatGatA11AY.1200.000037
S177M177del1atGat-11AY.1200.000037
S177M177KaTgaAg11AY.120.10.000321
S177M177IatGatT11AY.120.10.000321
S177M177TaTgaCg11AY.1210.000135
S177M177delATG---11AY.1210.000135
S177M177TaTgaCg11AY.160.00038
S177M177KaTgaAg11AY.200.000039
S177M177LAtgCtg11AY.23.10.000417
S177M177delATG---11AY.240.000431
S177M177VAtgGtg11AY.240.000431
S177M177KaTgaAg11AY.260.000028
S177M177TaTgaCg11AY.290.000016
S177M177delATG---11AY.30.00001
S177M177IatGatA11AY.3.10.000085
S177M177IatGatC11AY.300.000396
S177M177IatGatC11AY.360.000148
S177M177TaTgaCg11AY.360.000148
S177M177VAtgGtg11AY.370.000316
S177M177IatGatA11AY.380.000499
S177M177TaTgaCg11AY.390.000025
S177M177delATG---11AY.390.000025
S177M177KaTgaAg11AY.390.000025
S177M177VAtgGtg11AY.4.20.000022
S177M177TaTgaCg11AY.4.20.000022
S177M177VAtgGtg11AY.4.2.10.000149
S177M177del1atGat-11AY.4.50.000107
S177M177LAtgTtg11AY.410.000294
S177M177TaTgaCg11AY.410.000294
S177M177TaTgaCg11AY.420.00004
S177M177delATG---11AY.420.00004
S177M177del1atGat-11AY.430.000004
S177M177RaTgaGg11AY.430.000004
S177M177del1Atg-tg11AY.440.000006
S177M177VAtgGtg11AY.450.000122
S177M177TaTgaCg11AY.450.000122
S177M177delATG---11AY.46.20.000635
S177M177TaTgaCg11AY.46.20.000635
S177M177IatGatC11AY.46.40.000165
S177M177delATG---11AY.470.000031
S177M177TaTgaCg11AY.470.000031
S177M177IatGatA11AY.480.000465
S177M177delATG---11AY.50.000021
S177M177KaTgaAg11AY.50.000021
S177M177TaTgaCg11AY.50.000021
S177M177VAtgGtg11AY.540.000095
S177M177KaTgaAg11AY.550.000917
S177M177IatGatA11AY.550.000917
S177M177VAtgGtg11AY.590.00053
S177M177LAtgTtg11AY.60.000041
S177M177del2aTGa--11AY.60.000041
S177M177del2ATg--g11AY.600.000938
S177M177IatGatC11AY.600.000938
S177M177VAtgGtg11AY.610.000105
S177M177WATgTGg11AY.610.000105
S177M177TaTgaCg11AY.610.000105
S177M177IatGatT11AY.620.000436
S177M177IatGatT11AY.640.000595
S177M177IatGatC11AY.670.000464
S177M177TaTgaCg11AY.670.000464
S177M177LAtgCtg11AY.690.000187
S177M177KaTgaAg11AY.690.000187
S177M177VAtgGtg11AY.7.10.000113
S177M177IatGatT11AY.7.20.000559
S177M177delATG---11AY.7.20.000559
S177M177IatGatC11AY.700.000209
S177M177delATG---11AY.750.000056
S177M177TaTgaCg11AY.75.10.00018
S177M177KaTgaAg11AY.840.000437
S177M177RaTgaGg11AY.850.000427
S177M177delATG---11AY.850.000427
S177M177del1atGat-11AY.90.000068
S177M177IatGatC11AY.9.20.000037
S177M177VAtgGtg11AY.950.000761
S177M177TaTgaCg11AY.960.002075
S177M177IatGatA11AY.980.000079
S177M177KaTgaAg11AY.98.10.000048
S177M177VAtgGtg11AY.99.10.001553
S177M177IatGatC11AY.99.20.000092
S177M177delATG---11AZ.20.000821
S177M177VAtgGtg11B0.000128
S177M177delATG---11B0.000128
S177M177del1atGat-11B.1.10.000018
S177M177KaTgaAg11B.1.1.10.000327
S177M177IatGatT11B.1.1.1570.000913
S177M177IatGatT11B.1.1.2010.02439
S177M177IatGatA11B.1.1.2070.001182
S177M177TaTgaCg11B.1.1.2140.000055
S177M177VAtgGtg11B.1.1.2140.000055
S177M177IatGatC11B.1.1.2140.000055
S177M177IatGatC11B.1.1.2180.007692
S177M177IatGatC11B.1.1.2220.000204
S177M177VAtgGtg11B.1.1.250.000569
S177M177IatGatT11B.1.1.280.000311
S177M177IatGatT11B.1.1.2840.000107
S177M177delATG---11B.1.1.3060.000438
S177M177IatGatC11B.1.1.3260.001761
S177M177TaTgaCg11B.1.1.3480.000796
S177M177KaTgaAg11B.1.1.3690.000446
S177M177KaTgaAg11B.1.1.3700.012658
S177M177VAtgGtg11B.1.1.3720.000689
S177M177IatGatT11B.1.1.3720.000689
S177M177KaTgaAg11B.1.1.390.00051
S177M177IatGatT11B.1.1.3910.008547
S177M177IatGatA11B.1.1.4320.001266
S177M177delATG---11B.1.1.4370.010417
S177M177IatGatC11B.1.1.440.00241
S177M177TaTgaCg11B.1.1.4640.001473
S177M177IatGatT11B.1.1.500.000679
S177M177VAtgGtg11B.1.1.5190.00004
S177M177KaTgaAg11B.1.1.5190.00004
S177M177RaTgaGg11B.1.1.70.000001
S177M177delATG---11B.1.1.700.000341
S177M177VAtgGtg11B.1.1040.00369
S177M177IatGatT11B.1.1110.001175
S177M177delATG---11B.1.1390.000733
S177M177delATG---11B.1.1400.018868
S177M177IatGatC11B.1.1470.000756
S177M177TaTgaCg11B.1.1600.000031
S177M177delATG---11B.1.160.230.004831
S177M177KaTgaAg11B.1.1770.000013
S177M177del2aTGa--11B.1.177.100.000878
S177M177IatGatC11B.1.177.100.000878
S177M177delATG---11B.1.177.160.000664
S177M177del2aTGa--11B.1.177.180.00116
S177M177VAtgGtg11B.1.177.210.000076
S177M177del1atGat-11B.1.177.40.000211
S177M177del1Atg-tg11B.1.177.60.000977
S177M177delATG---11B.1.177.620.001192
S177M177IatGatC11B.1.177.650.000665
S177M177TaTgaCg11B.1.177.720.00339
S177M177IatGatC11B.1.177.730.000566
S177M177IatGatC11B.1.177.740.015152
S177M177KaTgaAg11B.1.20.000009
S177M177IatGatC11B.1.214.20.0006
S177M177delATG---11B.1.2180.005155
S177M177IatGatT11B.1.2370.004975
S177M177TaTgaCg11B.1.2390.001221
S177M177IatGatA11B.1.2400.000216
S177M177delATG---11B.1.2580.000067
S177M177VAtgGtg11B.1.258.110.000396
S177M177IatGatT11B.1.258.140.00098
S177M177TaTgaCg11B.1.258.170.000104
S177M177delATG---11B.1.2600.003344
S177M177IatGatA11B.1.2940.032258
S177M177TaTgaCg11B.1.30.002618
S177M177TaTgaCg11B.1.3110.000275
S177M177TaTgaCg11B.1.3210.034483
S177M177TaTgaCg11B.1.3240.001605
S177M177IatGatT11B.1.3380.008621
S177M177TaTgaCg11B.1.3510.00003
S177M177VAtgGtg11B.1.3510.00003
S177M177TaTgaCg11B.1.351.20.000303
S177M177IatGatC11B.1.360.000146
S177M177TaTGaCA11B.1.360.000146
S177M177VAtgGtg11B.1.36.10.00114
S177M177IatGatT11B.1.36.100.004785
S177M177delATG---11B.1.36.180.00042
S177M177IatGatT11B.1.36.290.000517
S177M177TaTgaCg11B.1.36.360.000602
S177M177IatGatT11B.1.36.80.001
S177M177IatGatC11B.1.3600.012658
S177M177IatGatC11B.1.3800.006623
S177M177IatGatT11B.1.3980.002976
S177M177del2aTGa--11B.1.4090.000781
S177M177IatGatT11B.1.4150.014286
S177M177VAtgGtg11B.1.4270.00005
S177M177delATG---11B.1.4270.00005
S177M177IatGatC11B.1.438.10.000107
S177M177VAtgGtg11B.1.4620.007246
S177M177IatGatC11B.1.5170.000427
S177M177VAtgGtg11B.1.5260.000024
S177M177delATG---11B.1.5610.000397
S177M177IatGatC11B.1.5650.00081
S177M177IatGatT11B.1.5810.009434
S177M177IatGatC11B.1.5820.000491
S177M177IatGatC11B.1.6090.000479
S177M177delATG---11B.1.617.10.000129
S177M177LAtgTtg11B.1.617.20.000004
S177M177delATG---11B.1.6200.000946
S177M177TaTgaCg11B.1.6210.000089
S177M177LAtgTtg11B.1.6210.000089
S177M177delATG---11B.1.621.10.000506
S177M177TaTgaCg11B.1.6280.000352
S177M177IatGatA11B.1.6370.000073
S177M177delATG---11B.1.6380.052632
S177M177IatGatC11B.190.037037
S177M177delATG---11B.340.013699
S177M177IatGatA11B.4.40.018868
S177M177TaTgaCg11B.60.00091
S177M177IatGatC11C.160.00106
S177M177KaTgaAg11C.350.000774
S177M177TaTgaCg11P.10.000016
S177M177delATG---11P.1.10.000318
S177M177delATG---11P.1.100.000269
S177M177IatGatC11P.1.120.000484
S177M177IatGatC11P.1.40.000977
S177M177IatGatC11Q.60.006623
S177M177IatGatC11W.10.008696
S177M177IatGatC11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.