CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 177 | M177I | nonsyn | atG | atA | 8044 | 3337 | 0.414843 | 22091-22093 | |
S | 177 | M177I | nonsyn | atG | atT | 8044 | 2509 | 0.311909 | 22091-22093 | |
S | 177 | M177I | nonsyn | atG | atC | 8044 | 2198 | 0.273247 | 22091-22093 | |
S | 177 | M177T | nonsyn | aTg | aCg | 622 | 616 | 0.990354 | 22091-22093 | |
S | 177 | M177T | nonsyn | aTG | aCA | 622 | 3 | 0.00482315 | 22091-22093 | |
S | 177 | M177T | nonsyn | aTG | aCC | 622 | 3 | 0.00482315 | 22091-22093 | |
S | 177 | M177V | nonsyn | Atg | Gtg | 436 | 435 | 0.997706 | 22091-22093 | |
S | 177 | M177V | nonsyn | AtG | GtA | 436 | 1 | 0.00229358 | 22091-22093 | |
S | 177 | M177del | del | ATG | --- | 193 | 193 | 1 | 22091-22093 | |
S | 177 | M177K | nonsyn | aTg | aAg | 133 | 133 | 1 | 22091-22093 | |
S | 177 | M177L | nonsyn | Atg | Ttg | 103 | 95 | 0.92233 | 22091-22093 | |
S | 177 | M177L | nonsyn | Atg | Ctg | 103 | 7 | 0.0679612 | 22091-22093 | |
S | 177 | M177L | nonsyn | AtG | TtA | 103 | 1 | 0.00970874 | 22091-22093 | |
S | 177 | M177R | nonsyn | aTg | aGg | 24 | 24 | 1 | 22091-22093 | |
S | 177 | M177del1 | del | atG | at- | 18 | 14 | 0.777778 | 22091-22093 | |
S | 177 | M177del1 | del | Atg | -tg | 18 | 2 | 0.111111 | 22091-22093 | |
S | 177 | M177del1 | del | aTg | a-g | 18 | 1 | 0.0555556 | 22091-22093 | |
S | 177 | M177del1 | del | AtG | -tN | 18 | 1 | 0.0555556 | 22091-22093 | |
S | 177 | M177del2 | del | aTG | a-- | 11 | 9 | 0.818182 | 22091-22093 | |
S | 177 | M177del2 | del | ATg | --g | 11 | 1 | 0.0909091 | 22091-22093 | |
S | 177 | M177del2 | del | ATG | --T | 11 | 1 | 0.0909091 | 22091-22093 | |
S | 177 | M177N | nonsyn | aTG | aAT | 1 | 1 | 1 | 22091-22093 | |
S | 177 | M177W | nonsyn | ATg | TGg | 1 | 1 | 1 | 22091-22093 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 177 | M177I | atG | atA | 3337 | 8044 | All | 0.000638 |
S | 177 | M177I | atG | atT | 2509 | 8044 | All | 0.00048 |
S | 177 | M177I | atG | atC | 2198 | 8044 | All | 0.00042 |
S | 177 | M177I | atG | atA | 2659 | 2694 | AY.3 | 0.026447 |
S | 177 | M177I | atG | atC | 19 | 2694 | AY.3 | 0.000189 |
S | 177 | M177I | atG | atT | 16 | 2694 | AY.3 | 0.000159 |
S | 177 | M177I | atG | atT | 1204 | 1209 | AY.26 | 0.034085 |
S | 177 | M177I | atG | atC | 4 | 1209 | AY.26 | 0.000113 |
S | 177 | M177I | atG | atA | 1 | 1209 | AY.26 | 0.000028 |
S | 177 | M177I | atG | atC | 620 | 1007 | B.1.1.7 | 0.000555 |
S | 177 | M177I | atG | atT | 296 | 1007 | B.1.1.7 | 0.000265 |
S | 177 | M177I | atG | atA | 91 | 1007 | B.1.1.7 | 0.000081 |
S | 177 | M177T | aTg | aCg | 616 | 622 | All | 0.000118 |
S | 177 | M177T | aTG | aCC | 3 | 622 | All | 0.000001 |
S | 177 | M177T | aTG | aCA | 3 | 622 | All | 0.000001 |
S | 177 | M177V | Atg | Gtg | 435 | 436 | All | 0.000083 |
S | 177 | M177V | AtG | GtA | 1 | 436 | All | 0 |
S | 177 | M177I | atG | atT | 145 | 293 | AY.25 | 0.000872 |
S | 177 | M177I | atG | atA | 139 | 293 | AY.25 | 0.000836 |
S | 177 | M177I | atG | atC | 9 | 293 | AY.25 | 0.000054 |
S | 177 | M177I | atG | atC | 140 | 278 | AY.4 | 0.000218 |
S | 177 | M177I | atG | atT | 105 | 278 | AY.4 | 0.000163 |
S | 177 | M177I | atG | atA | 33 | 278 | AY.4 | 0.000051 |
S | 177 | M177I | atG | atC | 173 | 270 | B.1.2 | 0.001523 |
S | 177 | M177I | atG | atT | 80 | 270 | B.1.2 | 0.000704 |
S | 177 | M177I | atG | atA | 17 | 270 | B.1.2 | 0.00015 |
S | 177 | M177I | atG | atC | 230 | 231 | B.1.596 | 0.020042 |
S | 177 | M177I | atG | atT | 1 | 231 | B.1.596 | 0.000087 |
S | 177 | M177I | atG | atC | 110 | 226 | B.1.617.2 | 0.000414 |
S | 177 | M177I | atG | atA | 93 | 226 | B.1.617.2 | 0.00035 |
S | 177 | M177I | atG | atT | 23 | 226 | B.1.617.2 | 0.000087 |
S | 177 | M177T | aTg | aCg | 201 | 201 | Q.7 | 0.223333 |
S | 177 | M177del | ATG | --- | 193 | 193 | All | 0.000037 |
S | 177 | M177I | atG | atT | 152 | 154 | AY.6 | 0.006252 |
S | 177 | M177I | atG | atA | 1 | 154 | AY.6 | 0.000041 |
S | 177 | M177I | atG | atC | 1 | 154 | AY.6 | 0.000041 |
S | 177 | M177I | atG | atT | 88 | 150 | AY.44 | 0.000536 |
S | 177 | M177I | atG | atC | 52 | 150 | AY.44 | 0.000317 |
S | 177 | M177I | atG | atA | 10 | 150 | AY.44 | 0.000061 |
S | 177 | M177I | atG | atC | 146 | 146 | Q.3 | 0.021175 |
S | 177 | M177K | aTg | aAg | 133 | 133 | All | 0.000025 |
S | 177 | M177I | atG | atC | 129 | 129 | AY.22 | 0.269874 |
S | 177 | M177L | Atg | Ttg | 95 | 103 | All | 0.000018 |
S | 177 | M177L | Atg | Ctg | 7 | 103 | All | 0.000001 |
S | 177 | M177L | AtG | TtA | 1 | 103 | All | 0 |
S | 177 | M177T | aTg | aCg | 90 | 90 | AY.4 | 0.00014 |
S | 177 | M177I | atG | atC | 80 | 82 | B.1.621 | 0.007082 |
S | 177 | M177I | atG | atT | 2 | 82 | B.1.621 | 0.000177 |
S | 177 | M177L | Atg | Ttg | 79 | 81 | B.1.1.7 | 0.000071 |
S | 177 | M177L | Atg | Ctg | 2 | 81 | B.1.1.7 | 0.000002 |
S | 177 | M177I | atG | atT | 62 | 77 | AY.103 | 0.000385 |
S | 177 | M177I | atG | atC | 12 | 77 | AY.103 | 0.000075 |
S | 177 | M177I | atG | atA | 3 | 77 | AY.103 | 0.000019 |
S | 177 | M177I | atG | atC | 66 | 68 | AY.100 | 0.003036 |
S | 177 | M177I | atG | atA | 1 | 68 | AY.100 | 0.000046 |
S | 177 | M177I | atG | atT | 1 | 68 | AY.100 | 0.000046 |
S | 177 | M177I | atG | atT | 60 | 64 | AY.4.2 | 0.001301 |
S | 177 | M177I | atG | atC | 4 | 64 | AY.4.2 | 0.000087 |
S | 177 | M177T | aTg | aCg | 61 | 62 | B.1.1.7 | 0.000055 |
S | 177 | M177T | aTG | aCA | 1 | 62 | B.1.1.7 | 0.000001 |
S | 177 | M177I | atG | atC | 59 | 60 | B.1.177 | 0.000777 |
S | 177 | M177I | atG | atT | 1 | 60 | B.1.177 | 0.000013 |
S | 177 | M177V | Atg | Gtg | 58 | 58 | B.1.617.2 | 0.000218 |
S | 177 | M177V | Atg | Gtg | 41 | 41 | B.1.1.7 | 0.000037 |
S | 177 | M177V | Atg | Gtg | 40 | 40 | AY.4 | 0.000062 |
S | 177 | M177V | Atg | Gtg | 39 | 39 | AY.43 | 0.000173 |
S | 177 | M177I | atG | atT | 22 | 39 | AY.43 | 0.000097 |
S | 177 | M177I | atG | atC | 9 | 39 | AY.43 | 0.00004 |
S | 177 | M177I | atG | atA | 8 | 39 | AY.43 | 0.000035 |
S | 177 | M177I | atG | atC | 28 | 37 | B.1 | 0.000256 |
S | 177 | M177I | atG | atT | 8 | 37 | B.1 | 0.000073 |
S | 177 | M177I | atG | atA | 1 | 37 | B.1 | 0.000009 |
S | 177 | M177I | atG | atA | 14 | 36 | AY.102 | 0.000371 |
S | 177 | M177I | atG | atC | 13 | 36 | AY.102 | 0.000345 |
S | 177 | M177I | atG | atT | 9 | 36 | AY.102 | 0.000239 |
S | 177 | M177I | atG | atA | 35 | 35 | B.1.258.15 | 0.660377 |
S | 177 | M177K | aTg | aAg | 29 | 29 | AY.43 | 0.000128 |
S | 177 | M177I | atG | atA | 28 | 28 | B.1.1.168 | 0.736842 |
S | 177 | M177del | ATG | --- | 28 | 28 | B.1.1.7 | 0.000025 |
S | 177 | M177I | atG | atC | 23 | 28 | B.1.526 | 0.000541 |
S | 177 | M177I | atG | atT | 4 | 28 | B.1.526 | 0.000094 |
S | 177 | M177I | atG | atA | 1 | 28 | B.1.526 | 0.000024 |
S | 177 | M177I | atG | atT | 14 | 28 | P.1 | 0.000221 |
S | 177 | M177I | atG | atA | 8 | 28 | P.1 | 0.000126 |
S | 177 | M177I | atG | atC | 6 | 28 | P.1 | 0.000095 |
S | 177 | M177T | aTg | aCg | 25 | 25 | AY.44 | 0.000152 |
S | 177 | M177R | aTg | aGg | 24 | 24 | All | 0.000005 |
S | 177 | M177I | atG | atC | 17 | 24 | AY.113 | 0.002421 |
S | 177 | M177I | atG | atT | 7 | 24 | AY.113 | 0.000997 |
S | 177 | M177V | Atg | Gtg | 24 | 24 | AY.44 | 0.000146 |
S | 177 | M177I | atG | atT | 23 | 23 | B.1.131 | 0.201754 |
S | 177 | M177V | Atg | Gtg | 19 | 19 | AY.103 | 0.000118 |
S | 177 | M177del | ATG | --- | 19 | 19 | AY.43 | 0.000084 |
S | 177 | M177del1 | atG | at- | 14 | 18 | All | 0.000003 |
S | 177 | M177del1 | Atg | -tg | 2 | 18 | All | 0 |
S | 177 | M177del1 | aTg | a-g | 1 | 18 | All | 0 |
S | 177 | M177del1 | AtG | -tN | 1 | 18 | All | 0 |
S | 177 | M177I | atG | atA | 17 | 18 | AY.92 | 0.004884 |
S | 177 | M177I | atG | atT | 1 | 18 | AY.92 | 0.000287 |
S | 177 | M177T | aTg | aCg | 18 | 18 | B.1 | 0.000165 |
S | 177 | M177T | aTg | aCg | 18 | 18 | B.1.617.2 | 0.000068 |
S | 177 | M177I | atG | atC | 12 | 17 | P.1.15 | 0.002788 |
S | 177 | M177I | atG | atA | 5 | 17 | P.1.15 | 0.001162 |
S | 177 | M177T | aTg | aCg | 16 | 16 | AY.75 | 0.000896 |
S | 177 | M177T | aTg | aCg | 16 | 16 | B.1.429 | 0.000376 |
S | 177 | M177V | Atg | Gtg | 15 | 15 | AY.120 | 0.000558 |
S | 177 | M177I | atG | atA | 8 | 15 | B.1.1 | 0.000145 |
S | 177 | M177I | atG | atC | 5 | 15 | B.1.1 | 0.000091 |
S | 177 | M177I | atG | atT | 2 | 15 | B.1.1 | 0.000036 |
S | 177 | M177K | aTg | aAg | 15 | 15 | B.1.1.7 | 0.000013 |
S | 177 | M177I | atG | atT | 15 | 15 | B.1.305 | 0.032258 |
S | 177 | M177I | atG | atC | 14 | 14 | AZ.3 | 0.021277 |
S | 177 | M177V | Atg | Gtg | 14 | 14 | B.1.2 | 0.000123 |
S | 177 | M177I | atG | atA | 12 | 14 | P.1.1 | 0.003812 |
S | 177 | M177I | atG | atT | 2 | 14 | P.1.1 | 0.000635 |
S | 177 | M177del | ATG | --- | 14 | 14 | P.1.15 | 0.003253 |
S | 177 | M177del | ATG | --- | 13 | 13 | AY.4 | 0.00002 |
S | 177 | M177T | aTg | aCg | 13 | 13 | B.1.177.81 | 0.002461 |
S | 177 | M177I | atG | atT | 8 | 13 | B.1.429 | 0.000188 |
S | 177 | M177I | atG | atC | 5 | 13 | B.1.429 | 0.000118 |
S | 177 | M177I | atG | atA | 9 | 12 | AY.117 | 0.000761 |
S | 177 | M177I | atG | atC | 3 | 12 | AY.117 | 0.000254 |
S | 177 | M177T | aTg | aCg | 12 | 12 | AY.119 | 0.000424 |
S | 177 | M177I | atG | atA | 9 | 12 | AY.119 | 0.000318 |
S | 177 | M177I | atG | atC | 2 | 12 | AY.119 | 0.000071 |
S | 177 | M177I | atG | atT | 1 | 12 | AY.119 | 0.000035 |
S | 177 | M177I | atG | atA | 6 | 12 | B.1.160 | 0.000187 |
S | 177 | M177I | atG | atT | 6 | 12 | B.1.160 | 0.000187 |
S | 177 | M177K | aTg | aAg | 12 | 12 | B.1.628 | 0.004228 |
S | 177 | M177I | atG | atC | 12 | 12 | Q.1 | 0.001516 |
S | 177 | M177del2 | aTG | a-- | 9 | 11 | All | 0.000002 |
S | 177 | M177del2 | ATG | --T | 1 | 11 | All | 0 |
S | 177 | M177del2 | ATg | --g | 1 | 11 | All | 0 |
S | 177 | M177I | atG | atA | 10 | 11 | AY.34 | 0.00097 |
S | 177 | M177I | atG | atC | 1 | 11 | AY.34 | 0.000097 |
S | 177 | M177V | Atg | Gtg | 11 | 11 | AY.39 | 0.000272 |
S | 177 | M177I | atG | atT | 7 | 11 | AY.39 | 0.000173 |
S | 177 | M177I | atG | atC | 3 | 11 | AY.39 | 0.000074 |
S | 177 | M177I | atG | atA | 1 | 11 | AY.39 | 0.000025 |
S | 177 | M177T | aTg | aCg | 11 | 11 | AY.54 | 0.001049 |
S | 177 | M177I | atG | atA | 10 | 11 | AY.84 | 0.004374 |
S | 177 | M177I | atG | atT | 1 | 11 | AY.84 | 0.000437 |
S | 177 | M177I | atG | atC | 8 | 11 | AY.98.1 | 0.000387 |
S | 177 | M177I | atG | atT | 3 | 11 | AY.98.1 | 0.000145 |
S | 177 | M177I | atG | atT | 9 | 11 | B.1.1.243 | 0.036735 |
S | 177 | M177I | atG | atC | 2 | 11 | B.1.1.243 | 0.008163 |
S | 177 | M177del | ATG | --- | 11 | 11 | P.1 | 0.000173 |
S | 177 | M177V | Atg | Gtg | 10 | 10 | AY.26 | 0.000283 |
S | 177 | M177I | atG | atA | 5 | 10 | AY.29 | 0.000079 |
S | 177 | M177I | atG | atC | 5 | 10 | AY.29 | 0.000079 |
S | 177 | M177T | aTg | aCg | 10 | 10 | AY.43 | 0.000044 |
S | 177 | M177I | atG | atT | 4 | 10 | AY.5 | 0.000083 |
S | 177 | M177I | atG | atA | 4 | 10 | AY.5 | 0.000083 |
S | 177 | M177I | atG | atC | 2 | 10 | AY.5 | 0.000041 |
S | 177 | M177V | Atg | Gtg | 10 | 10 | B.1.160 | 0.000312 |
S | 177 | M177I | atG | atC | 6 | 10 | B.1.243 | 0.000418 |
S | 177 | M177I | atG | atT | 4 | 10 | B.1.243 | 0.000278 |
S | 177 | M177I | atG | atA | 10 | 10 | B.1.277 | 0.238095 |
S | 177 | M177V | Atg | Gtg | 10 | 10 | B.1.617.1 | 0.00129 |
S | 177 | M177I | atG | atA | 9 | 9 | AY.53 | 0.002588 |
S | 177 | M177I | atG | atC | 7 | 9 | B | 0.000895 |
S | 177 | M177I | atG | atT | 1 | 9 | B | 0.000128 |
S | 177 | M177I | atG | atA | 1 | 9 | B | 0.000128 |
S | 177 | M177V | Atg | Gtg | 9 | 9 | B.1 | 0.000082 |
S | 177 | M177del | ATG | --- | 9 | 9 | B.1 | 0.000082 |
S | 177 | M177V | Atg | Gtg | 9 | 9 | B.1.1.222 | 0.001836 |
S | 177 | M177I | atG | atC | 5 | 9 | B.1.258 | 0.000333 |
S | 177 | M177I | atG | atT | 4 | 9 | B.1.258 | 0.000266 |
S | 177 | M177I | atG | atT | 5 | 9 | B.1.351 | 0.000149 |
S | 177 | M177I | atG | atC | 4 | 9 | B.1.351 | 0.000119 |
S | 177 | M177I | atG | atA | 4 | 8 | AY.42 | 0.000161 |
S | 177 | M177I | atG | atT | 3 | 8 | AY.42 | 0.000121 |
S | 177 | M177I | atG | atC | 1 | 8 | AY.42 | 0.00004 |
S | 177 | M177del | ATG | --- | 8 | 8 | B.1.177 | 0.000105 |
S | 177 | M177I | atG | atC | 7 | 8 | B.1.221 | 0.000497 |
S | 177 | M177I | atG | atT | 1 | 8 | B.1.221 | 0.000071 |
S | 177 | M177del | ATG | --- | 8 | 8 | C.37 | 0.000929 |
S | 177 | M177I | atG | atT | 8 | 8 | P.1.16 | 0.002993 |
S | 177 | M177I | atG | atA | 3 | 7 | AY.13 | 0.000483 |
S | 177 | M177I | atG | atC | 2 | 7 | AY.13 | 0.000322 |
S | 177 | M177I | atG | atT | 2 | 7 | AY.13 | 0.000322 |
S | 177 | M177I | atG | atT | 3 | 7 | AY.20 | 0.000117 |
S | 177 | M177I | atG | atC | 3 | 7 | AY.20 | 0.000117 |
S | 177 | M177I | atG | atA | 1 | 7 | AY.20 | 0.000039 |
S | 177 | M177K | aTg | aAg | 7 | 7 | AY.4.5 | 0.000752 |
S | 177 | M177T | aTg | aCg | 7 | 7 | B.1.2 | 0.000062 |
S | 177 | M177I | atG | atA | 6 | 6 | AY.105 | 0.003859 |
S | 177 | M177V | Atg | Gtg | 6 | 6 | AY.25 | 0.000036 |
S | 177 | M177V | Atg | Gtg | 6 | 6 | AY.3 | 0.00006 |
S | 177 | M177del | ATG | --- | 6 | 6 | AY.4.5 | 0.000645 |
S | 177 | M177K | aTg | aAg | 6 | 6 | AY.44 | 0.000037 |
S | 177 | M177I | atG | atA | 4 | 6 | AY.47 | 0.000124 |
S | 177 | M177I | atG | atT | 2 | 6 | AY.47 | 0.000062 |
S | 177 | M177V | Atg | Gtg | 6 | 6 | AY.5.4 | 0.00166 |
S | 177 | M177I | atG | atA | 6 | 6 | AY.57 | 0.003937 |
S | 177 | M177I | atG | atC | 5 | 6 | B.1.1.519 | 0.000199 |
S | 177 | M177I | atG | atT | 1 | 6 | B.1.1.519 | 0.00004 |
S | 177 | M177del2 | aTG | a-- | 5 | 6 | B.1.1.7 | 0.000004 |
S | 177 | M177del1 | atG | at- | 5 | 6 | B.1.1.7 | 0.000004 |
S | 177 | M177del1 | aTg | a-g | 1 | 6 | B.1.1.7 | 0.000001 |
S | 177 | M177del2 | ATG | --T | 1 | 6 | B.1.1.7 | 0.000001 |
S | 177 | M177I | atG | atC | 6 | 6 | B.1.177.20 | 0.009105 |
S | 177 | M177I | atG | atC | 6 | 6 | B.1.349 | 0.004289 |
S | 177 | M177K | aTg | aAg | 6 | 6 | B.1.617.2 | 0.000023 |
S | 177 | M177del | ATG | --- | 6 | 6 | B.1.617.2 | 0.000023 |
S | 177 | M177I | atG | atC | 4 | 6 | P.1.14 | 0.000191 |
S | 177 | M177I | atG | atA | 2 | 6 | P.1.14 | 0.000096 |
S | 177 | M177I | atG | atA | 4 | 5 | AY.23 | 0.000279 |
S | 177 | M177I | atG | atT | 1 | 5 | AY.23 | 0.00007 |
S | 177 | M177T | aTg | aCg | 5 | 5 | AY.25 | 0.00003 |
S | 177 | M177del | ATG | --- | 5 | 5 | AY.25 | 0.00003 |
S | 177 | M177T | aTg | aCg | 5 | 5 | AY.3 | 0.00005 |
S | 177 | M177V | Atg | Gtg | 5 | 5 | AY.42 | 0.000201 |
S | 177 | M177V | Atg | Gtg | 5 | 5 | AY.46 | 0.00052 |
S | 177 | M177I | atG | atC | 5 | 5 | AY.46.6 | 0.000361 |
S | 177 | M177T | aTg | aCg | 5 | 5 | AY.59 | 0.002648 |
S | 177 | M177T | aTg | aCg | 5 | 5 | AY.6 | 0.000206 |
S | 177 | M177V | Atg | Gtg | 5 | 5 | AY.75 | 0.00028 |
S | 177 | M177T | aTg | aCg | 5 | 5 | AY.98.1 | 0.000242 |
S | 177 | M177T | aTg | aCg | 5 | 5 | B.1.1 | 0.000091 |
S | 177 | M177K | aTg | aAg | 5 | 5 | B.1.1 | 0.000091 |
S | 177 | M177I | atG | atC | 5 | 5 | B.1.1.170 | 0.006234 |
S | 177 | M177T | aTG | aCC | 3 | 5 | B.1.596 | 0.000261 |
S | 177 | M177T | aTg | aCg | 2 | 5 | B.1.596 | 0.000174 |
S | 177 | M177I | atG | atT | 3 | 5 | B.40 | 0.001093 |
S | 177 | M177I | atG | atA | 2 | 5 | B.40 | 0.000729 |
S | 177 | M177I | atG | atA | 5 | 5 | C.36.3 | 0.002836 |
S | 177 | M177I | atG | atT | 4 | 5 | D.2 | 0.0003 |
S | 177 | M177I | atG | atA | 1 | 5 | D.2 | 0.000075 |
S | 177 | M177V | Atg | Gtg | 5 | 5 | P.1 | 0.000079 |
S | 177 | M177I | atG | atT | 2 | 4 | 0.111111 | |
S | 177 | M177I | atG | atC | 2 | 4 | 0.111111 | |
S | 177 | M177R | aTg | aGg | 4 | 4 | AY.102 | 0.000106 |
S | 177 | M177T | aTg | aCg | 4 | 4 | AY.110 | 0.000451 |
S | 177 | M177I | atG | atC | 4 | 4 | AY.14 | 0.000352 |
S | 177 | M177V | Atg | Gtg | 4 | 4 | AY.23 | 0.000279 |
S | 177 | M177I | atG | atA | 2 | 4 | AY.27 | 0.000129 |
S | 177 | M177I | atG | atT | 1 | 4 | AY.27 | 0.000065 |
S | 177 | M177I | atG | atC | 1 | 4 | AY.27 | 0.000065 |
S | 177 | M177L | Atg | Ttg | 4 | 4 | AY.3 | 0.00004 |
S | 177 | M177T | aTg | aCg | 4 | 4 | AY.3.1 | 0.000341 |
S | 177 | M177del1 | atG | at- | 3 | 4 | AY.4 | 0.000005 |
S | 177 | M177del1 | AtG | -tN | 1 | 4 | AY.4 | 0.000002 |
S | 177 | M177K | aTg | aAg | 4 | 4 | AY.4.4 | 0.001637 |
S | 177 | M177del | ATG | --- | 4 | 4 | AY.44 | 0.000024 |
S | 177 | M177I | atG | atT | 2 | 4 | AY.45 | 0.000243 |
S | 177 | M177I | atG | atC | 1 | 4 | AY.45 | 0.000122 |
S | 177 | M177I | atG | atA | 1 | 4 | AY.45 | 0.000122 |
S | 177 | M177I | atG | atA | 2 | 4 | AY.61 | 0.00021 |
S | 177 | M177I | atG | atC | 1 | 4 | AY.61 | 0.000105 |
S | 177 | M177I | atG | atT | 1 | 4 | AY.61 | 0.000105 |
S | 177 | M177I | atG | atC | 3 | 4 | AY.9 | 0.000203 |
S | 177 | M177I | atG | atT | 1 | 4 | AY.9 | 0.000068 |
S | 177 | M177I | atG | atA | 3 | 4 | AY.91 | 0.002191 |
S | 177 | M177I | atG | atC | 1 | 4 | AY.91 | 0.00073 |
S | 177 | M177del | ATG | --- | 4 | 4 | B.1.1 | 0.000073 |
S | 177 | M177I | atG | atT | 4 | 4 | B.1.1.219 | 0.02 |
S | 177 | M177I | atG | atC | 4 | 4 | B.1.177.17 | 0.003284 |
S | 177 | M177I | atG | atA | 4 | 4 | B.1.177.69 | 0.005935 |
S | 177 | M177K | aTg | aAg | 4 | 4 | B.1.258.17 | 0.000416 |
S | 177 | M177I | atG | atC | 4 | 4 | B.1.367 | 0.00317 |
S | 177 | M177I | atG | atT | 4 | 4 | B.1.404 | 0.005208 |
S | 177 | M177I | atG | atC | 2 | 4 | B.1.525 | 0.000226 |
S | 177 | M177I | atG | atT | 2 | 4 | B.1.525 | 0.000226 |
S | 177 | M177R | aTg | aGg | 4 | 4 | B.1.617.2 | 0.000015 |
S | 177 | M177V | Atg | Gtg | 4 | 4 | B.1.621 | 0.000354 |
S | 177 | M177I | atG | atA | 2 | 4 | Q.8 | 0.00033 |
S | 177 | M177I | atG | atT | 2 | 4 | Q.8 | 0.00033 |
S | 177 | M177T | aTg | aCg | 3 | 3 | A.2.5.2 | 0.004717 |
S | 177 | M177I | atG | atT | 2 | 3 | AE.8 | 0.000978 |
S | 177 | M177I | atG | atC | 1 | 3 | AE.8 | 0.000489 |
S | 177 | M177K | aTg | aAg | 3 | 3 | AY.103 | 0.000019 |
S | 177 | M177I | atG | atT | 3 | 3 | AY.104 | 0.005952 |
S | 177 | M177V | Atg | Gtg | 3 | 3 | AY.12 | 0.000948 |
S | 177 | M177V | Atg | Gtg | 3 | 3 | AY.20 | 0.000117 |
S | 177 | M177T | aTg | aCg | 3 | 3 | AY.20 | 0.000117 |
S | 177 | M177R | aTg | aGg | 3 | 3 | AY.39 | 0.000074 |
S | 177 | M177I | atG | atC | 3 | 3 | AY.39.1 | 0.000119 |
S | 177 | M177R | aTg | aGg | 3 | 3 | AY.4 | 0.000005 |
S | 177 | M177T | aTg | aCg | 3 | 3 | AY.46 | 0.000312 |
S | 177 | M177I | atG | atC | 3 | 3 | AY.46 | 0.000312 |
S | 177 | M177V | Atg | Gtg | 3 | 3 | AY.5 | 0.000062 |
S | 177 | M177I | atG | atC | 3 | 3 | AY.68 | 0.000821 |
S | 177 | M177I | atG | atA | 2 | 3 | AY.88 | 0.001768 |
S | 177 | M177I | atG | atC | 1 | 3 | AY.88 | 0.000884 |
S | 177 | M177V | Atg | Gtg | 3 | 3 | AY.9.2 | 0.00011 |
S | 177 | M177K | aTg | aAg | 3 | 3 | B.1 | 0.000027 |
S | 177 | M177V | Atg | Gtg | 3 | 3 | B.1.1 | 0.000054 |
S | 177 | M177I | atG | atT | 2 | 3 | B.1.1.1 | 0.000653 |
S | 177 | M177I | atG | atC | 1 | 3 | B.1.1.1 | 0.000327 |
S | 177 | M177K | aTg | aAg | 3 | 3 | B.1.177.21 | 0.000229 |
S | 177 | M177I | atG | atT | 2 | 3 | B.1.177.4 | 0.000422 |
S | 177 | M177I | atG | atA | 1 | 3 | B.1.177.4 | 0.000211 |
S | 177 | M177I | atG | atC | 2 | 3 | B.1.234 | 0.000264 |
S | 177 | M177I | atG | atT | 1 | 3 | B.1.234 | 0.000132 |
S | 177 | M177T | aTg | aCg | 3 | 3 | B.1.258 | 0.0002 |
S | 177 | M177K | aTg | aAg | 3 | 3 | B.1.351 | 0.000089 |
S | 177 | M177I | atG | atC | 2 | 3 | B.1.397 | 0.009709 |
S | 177 | M177I | atG | atT | 1 | 3 | B.1.397 | 0.004854 |
S | 177 | M177R | aTg | aGg | 3 | 3 | B.1.427 | 0.000151 |
S | 177 | M177I | atG | atC | 2 | 3 | B.1.595 | 0.000522 |
S | 177 | M177I | atG | atT | 1 | 3 | B.1.595 | 0.000261 |
S | 177 | M177V | Atg | Gtg | 3 | 3 | B.1.621.1 | 0.001517 |
S | 177 | M177K | aTg | aAg | 3 | 3 | B.1.636 | 0.020134 |
S | 177 | M177V | Atg | Gtg | 3 | 3 | B.1.637 | 0.000219 |
S | 177 | M177I | atG | atT | 3 | 3 | C.37 | 0.000348 |
S | 177 | M177I | atG | atT | 3 | 3 | C.6 | 0.111111 |
S | 177 | M177V | Atg | Gtg | 3 | 3 | P.1.14 | 0.000143 |
S | 177 | M177V | Atg | Gtg | 2 | 3 | P.1.15 | 0.000465 |
S | 177 | M177V | AtG | GtA | 1 | 3 | P.1.15 | 0.000232 |
S | 177 | M177T | aTg | aCg | 3 | 3 | P.1.17 | 0.000485 |
S | 177 | M177del | ATG | --- | 3 | 3 | P.1.7 | 0.000958 |
S | 177 | M177I | atG | atT | 2 | 2 | A.2.5 | 0.000998 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.100 | 0.000092 |
S | 177 | M177T | aTg | aCg | 2 | 2 | AY.102 | 0.000053 |
S | 177 | M177del | ATG | --- | 2 | 2 | AY.102 | 0.000053 |
S | 177 | M177T | aTg | aCg | 2 | 2 | AY.103 | 0.000012 |
S | 177 | M177I | atG | atA | 2 | 2 | AY.118 | 0.000125 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.119 | 0.000071 |
S | 177 | M177del | ATG | --- | 2 | 2 | AY.120 | 0.000074 |
S | 177 | M177T | aTg | aCg | 2 | 2 | AY.120 | 0.000074 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.120.2.1 | 0.000997 |
S | 177 | M177I | atG | atT | 2 | 2 | AY.121 | 0.000271 |
S | 177 | M177T | aTg | aCg | 2 | 2 | AY.22 | 0.004184 |
S | 177 | M177K | aTg | aAg | 2 | 2 | AY.23 | 0.000139 |
S | 177 | M177L | Atg | Ttg | 2 | 2 | AY.23 | 0.000139 |
S | 177 | M177del | ATG | --- | 2 | 2 | AY.23 | 0.000139 |
S | 177 | M177I | atG | atC | 1 | 2 | AY.23.1 | 0.000417 |
S | 177 | M177I | atG | atT | 1 | 2 | AY.23.1 | 0.000417 |
S | 177 | M177K | aTg | aAg | 2 | 2 | AY.25 | 0.000012 |
S | 177 | M177L | Atg | Ttg | 2 | 2 | AY.26 | 0.000057 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.29 | 0.000032 |
S | 177 | M177del | ATG | --- | 2 | 2 | AY.29 | 0.000032 |
S | 177 | M177I | atG | atC | 2 | 2 | AY.33 | 0.000134 |
S | 177 | M177del | ATG | --- | 2 | 2 | AY.33 | 0.000134 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.33 | 0.000134 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.36 | 0.000296 |
S | 177 | M177K | aTg | aAg | 2 | 2 | AY.4 | 0.000003 |
S | 177 | M177L | Atg | Ttg | 1 | 2 | AY.4 | 0.000002 |
S | 177 | M177L | Atg | Ctg | 1 | 2 | AY.4 | 0.000002 |
S | 177 | M177I | atG | atT | 1 | 2 | AY.5.3 | 0.000337 |
S | 177 | M177I | atG | atA | 1 | 2 | AY.5.3 | 0.000337 |
S | 177 | M177K | aTg | aAg | 2 | 2 | AY.53 | 0.000575 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.60 | 0.001876 |
S | 177 | M177I | atG | atC | 2 | 2 | AY.69 | 0.000373 |
S | 177 | M177I | atG | atC | 2 | 2 | AY.75 | 0.000112 |
S | 177 | M177I | atG | atT | 2 | 2 | AY.75.1 | 0.000361 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.79 | 0.002421 |
S | 177 | M177I | atG | atA | 1 | 2 | AY.93 | 0.000273 |
S | 177 | M177I | atG | atT | 1 | 2 | AY.93 | 0.000273 |
S | 177 | M177I | atG | atA | 2 | 2 | AY.96 | 0.004149 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | AY.98.1 | 0.000097 |
S | 177 | M177K | aTg | aAg | 2 | 2 | AY.99.2 | 0.000184 |
S | 177 | M177I | atG | atC | 2 | 2 | AZ.5 | 0.007018 |
S | 177 | M177L | Atg | Ctg | 2 | 2 | B.1 | 0.000018 |
S | 177 | M177R | aTg | aGg | 2 | 2 | B.1 | 0.000018 |
S | 177 | M177I | atG | atT | 2 | 2 | B.1.1.128 | 0.014184 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.1.216 | 0.001781 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.1.241 | 0.004141 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.1.25 | 0.001137 |
S | 177 | M177del | ATG | --- | 2 | 2 | B.1.1.315 | 0.016949 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.1.318 | 0.000302 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.1.318 | 0.000302 |
S | 177 | M177I | atG | atT | 2 | 2 | B.1.1.329 | 0.007692 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.1.413 | 0.013793 |
S | 177 | M177del | ATG | --- | 2 | 2 | B.1.160 | 0.000062 |
S | 177 | M177T | aTg | aCg | 2 | 2 | B.1.177 | 0.000026 |
S | 177 | M177I | atG | atT | 2 | 2 | B.1.177.55 | 0.004662 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.177.82 | 0.000955 |
S | 177 | M177del | ATG | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 177 | M177T | aTg | aCg | 2 | 2 | B.1.221.3 | 0.001667 |
S | 177 | M177I | atG | atA | 2 | 2 | B.1.36.18 | 0.00084 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | B.1.36.27 | 0.001527 |
S | 177 | M177T | aTg | aCg | 2 | 2 | B.1.396 | 0.001411 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.420 | 0.010417 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.420 | 0.010417 |
S | 177 | M177K | aTg | aAg | 2 | 2 | B.1.427 | 0.000101 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.427 | 0.00005 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.427 | 0.00005 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | B.1.429 | 0.000047 |
S | 177 | M177T | aTg | aCg | 2 | 2 | B.1.466 | 0.046512 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.466.2 | 0.000391 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.466.2 | 0.000391 |
S | 177 | M177T | aTg | aCg | 2 | 2 | B.1.469 | 0.00722 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.580 | 0.00813 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.617.1 | 0.000258 |
S | 177 | M177T | aTg | aCg | 1 | 2 | B.1.617.1 | 0.000129 |
S | 177 | M177T | aTG | aCA | 1 | 2 | B.1.617.1 | 0.000129 |
S | 177 | M177del | ATG | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.623 | 0.000536 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.623 | 0.000536 |
S | 177 | M177I | atG | atT | 2 | 2 | B.4.2 | 0.133333 |
S | 177 | M177I | atG | atA | 1 | 2 | N.5 | 0.001767 |
S | 177 | M177I | atG | atC | 1 | 2 | N.5 | 0.001767 |
S | 177 | M177V | Atg | Gtg | 2 | 2 | P.1.13 | 0.001797 |
S | 177 | M177L | Atg | Ttg | 2 | 2 | P.1.17 | 0.000324 |
S | 177 | M177I | atG | atC | 1 | 2 | P.1.17 | 0.000162 |
S | 177 | M177I | atG | atT | 1 | 2 | P.1.17 | 0.000162 |
S | 177 | M177I | atG | atA | 1 | 2 | P.2 | 0.000187 |
S | 177 | M177I | atG | atT | 1 | 2 | P.2 | 0.000187 |
S | 177 | M177T | aTg | aCg | 2 | 2 | Q.3 | 0.00029 |
S | 177 | M177I | atG | atT | 1 | 2 | Q.4 | 0.000455 |
S | 177 | M177I | atG | atC | 1 | 2 | Q.4 | 0.000455 |
S | 177 | M177T | aTg | aCg | 2 | 2 | Q.8 | 0.00033 |
S | 177 | M177K | aTg | aAg | 1 | 1 | 0.055556 | |
S | 177 | M177N | aTG | aAT | 1 | 1 | 0.055556 | |
S | 177 | M177I | atG | atT | 1 | 1 | A.18 | 0.05 |
S | 177 | M177R | aTg | aGg | 1 | 1 | A.19 | 0.009434 |
S | 177 | M177R | aTg | aGg | 1 | 1 | A.2 | 0.000662 |
S | 177 | M177T | aTg | aCg | 1 | 1 | A.2.4 | 0.003367 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | A.2.5 | 0.000499 |
S | 177 | M177del | ATG | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | A.2.5.1 | 0.004808 |
S | 177 | M177I | atG | atA | 1 | 1 | A.3 | 0.002096 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AA.3 | 0.027027 |
S | 177 | M177I | atG | atC | 1 | 1 | AD.2 | 0.000219 |
S | 177 | M177W | ATg | TGg | 1 | 1 | All | 0 |
S | 177 | M177N | aTG | aAT | 1 | 1 | All | 0 |
S | 177 | M177L | Atg | Ttg | 1 | 1 | AY.100 | 0.000046 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.100 | 0.000046 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.101 | 0.00049 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.102 | 0.000027 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.104 | 0.001984 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.105 | 0.000643 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.111 | 0.000183 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.111 | 0.000183 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.113 | 0.000142 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.117 | 0.000085 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.117 | 0.000085 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.118 | 0.000063 |
S | 177 | M177L | AtG | TtA | 1 | 1 | AY.119 | 0.000035 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.12 | 0.000316 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.120 | 0.000037 |
S | 177 | M177del1 | atG | at- | 1 | 1 | AY.120 | 0.000037 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.120.1 | 0.000321 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.120.1 | 0.000321 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.121 | 0.000135 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.121 | 0.000135 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.16 | 0.00038 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.20 | 0.000039 |
S | 177 | M177L | Atg | Ctg | 1 | 1 | AY.23.1 | 0.000417 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.24 | 0.000431 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.24 | 0.000431 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.26 | 0.000028 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.29 | 0.000016 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.3 | 0.00001 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.3.1 | 0.000085 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.30 | 0.000396 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.36 | 0.000148 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.36 | 0.000148 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.37 | 0.000316 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.38 | 0.000499 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.39 | 0.000025 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.39 | 0.000025 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.39 | 0.000025 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.4.2 | 0.000022 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.4.2 | 0.000022 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 177 | M177del1 | atG | at- | 1 | 1 | AY.4.5 | 0.000107 |
S | 177 | M177L | Atg | Ttg | 1 | 1 | AY.41 | 0.000294 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.41 | 0.000294 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.42 | 0.00004 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.42 | 0.00004 |
S | 177 | M177del1 | atG | at- | 1 | 1 | AY.43 | 0.000004 |
S | 177 | M177R | aTg | aGg | 1 | 1 | AY.43 | 0.000004 |
S | 177 | M177del1 | Atg | -tg | 1 | 1 | AY.44 | 0.000006 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.45 | 0.000122 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.45 | 0.000122 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.46.2 | 0.000635 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.46.4 | 0.000165 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.47 | 0.000031 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.47 | 0.000031 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.48 | 0.000465 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.5 | 0.000021 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.5 | 0.000021 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.5 | 0.000021 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.54 | 0.000095 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.55 | 0.000917 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.55 | 0.000917 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.59 | 0.00053 |
S | 177 | M177L | Atg | Ttg | 1 | 1 | AY.6 | 0.000041 |
S | 177 | M177del2 | aTG | a-- | 1 | 1 | AY.6 | 0.000041 |
S | 177 | M177del2 | ATg | --g | 1 | 1 | AY.60 | 0.000938 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.60 | 0.000938 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.61 | 0.000105 |
S | 177 | M177W | ATg | TGg | 1 | 1 | AY.61 | 0.000105 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.61 | 0.000105 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.62 | 0.000436 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.64 | 0.000595 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.67 | 0.000464 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.67 | 0.000464 |
S | 177 | M177L | Atg | Ctg | 1 | 1 | AY.69 | 0.000187 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.69 | 0.000187 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.7.1 | 0.000113 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.7.2 | 0.000559 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.7.2 | 0.000559 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.70 | 0.000209 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.75 | 0.000056 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.75.1 | 0.00018 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.84 | 0.000437 |
S | 177 | M177R | aTg | aGg | 1 | 1 | AY.85 | 0.000427 |
S | 177 | M177del | ATG | --- | 1 | 1 | AY.85 | 0.000427 |
S | 177 | M177del1 | atG | at- | 1 | 1 | AY.9 | 0.000068 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.9.2 | 0.000037 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.95 | 0.000761 |
S | 177 | M177T | aTg | aCg | 1 | 1 | AY.96 | 0.002075 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.98 | 0.000079 |
S | 177 | M177K | aTg | aAg | 1 | 1 | AY.98.1 | 0.000048 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | AY.99.1 | 0.001553 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.99.2 | 0.000092 |
S | 177 | M177del | ATG | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B | 0.000128 |
S | 177 | M177del | ATG | --- | 1 | 1 | B | 0.000128 |
S | 177 | M177del1 | atG | at- | 1 | 1 | B.1.1 | 0.000018 |
S | 177 | M177K | aTg | aAg | 1 | 1 | B.1.1.1 | 0.000327 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.157 | 0.000913 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.201 | 0.02439 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.1.207 | 0.001182 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.1.214 | 0.000055 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.1.214 | 0.000055 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.214 | 0.000055 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.218 | 0.007692 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.222 | 0.000204 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.1.25 | 0.000569 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.28 | 0.000311 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.284 | 0.000107 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.326 | 0.001761 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.1.348 | 0.000796 |
S | 177 | M177K | aTg | aAg | 1 | 1 | B.1.1.369 | 0.000446 |
S | 177 | M177K | aTg | aAg | 1 | 1 | B.1.1.370 | 0.012658 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.1.372 | 0.000689 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 177 | M177K | aTg | aAg | 1 | 1 | B.1.1.39 | 0.00051 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.391 | 0.008547 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.1.432 | 0.001266 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.1.437 | 0.010417 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.44 | 0.00241 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.1.464 | 0.001473 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.1.519 | 0.00004 |
S | 177 | M177K | aTg | aAg | 1 | 1 | B.1.1.519 | 0.00004 |
S | 177 | M177R | aTg | aGg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.104 | 0.00369 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.111 | 0.001175 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.139 | 0.000733 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.147 | 0.000756 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.160 | 0.000031 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 177 | M177K | aTg | aAg | 1 | 1 | B.1.177 | 0.000013 |
S | 177 | M177del2 | aTG | a-- | 1 | 1 | B.1.177.10 | 0.000878 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.177.10 | 0.000878 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 177 | M177del2 | aTG | a-- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.177.21 | 0.000076 |
S | 177 | M177del1 | atG | at- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 177 | M177del1 | Atg | -tg | 1 | 1 | B.1.177.6 | 0.000977 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.177.65 | 0.000665 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.177.72 | 0.00339 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.177.73 | 0.000566 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.177.74 | 0.015152 |
S | 177 | M177K | aTg | aAg | 1 | 1 | B.1.2 | 0.000009 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.214.2 | 0.0006 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.237 | 0.004975 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.239 | 0.001221 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.240 | 0.000216 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.258.11 | 0.000396 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.258.14 | 0.00098 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.258.17 | 0.000104 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.260 | 0.003344 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.294 | 0.032258 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.3 | 0.002618 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.311 | 0.000275 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.321 | 0.034483 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.324 | 0.001605 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.338 | 0.008621 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.351 | 0.00003 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.351 | 0.00003 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.351.2 | 0.000303 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.36 | 0.000146 |
S | 177 | M177T | aTG | aCA | 1 | 1 | B.1.36 | 0.000146 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.36.1 | 0.00114 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.36.10 | 0.004785 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.36.29 | 0.000517 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.36.36 | 0.000602 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.36.8 | 0.001 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.360 | 0.012658 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.380 | 0.006623 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.398 | 0.002976 |
S | 177 | M177del2 | aTG | a-- | 1 | 1 | B.1.409 | 0.000781 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.415 | 0.014286 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.427 | 0.00005 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.438.1 | 0.000107 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.462 | 0.007246 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.517 | 0.000427 |
S | 177 | M177V | Atg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.565 | 0.00081 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.581 | 0.009434 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.582 | 0.000491 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.609 | 0.000479 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 177 | M177L | Atg | Ttg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.621 | 0.000089 |
S | 177 | M177L | Atg | Ttg | 1 | 1 | B.1.621 | 0.000089 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.1.628 | 0.000352 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.637 | 0.000073 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 177 | M177I | atG | atC | 1 | 1 | B.19 | 0.037037 |
S | 177 | M177del | ATG | --- | 1 | 1 | B.34 | 0.013699 |
S | 177 | M177I | atG | atA | 1 | 1 | B.4.4 | 0.018868 |
S | 177 | M177T | aTg | aCg | 1 | 1 | B.6 | 0.00091 |
S | 177 | M177I | atG | atC | 1 | 1 | C.16 | 0.00106 |
S | 177 | M177K | aTg | aAg | 1 | 1 | C.35 | 0.000774 |
S | 177 | M177T | aTg | aCg | 1 | 1 | P.1 | 0.000016 |
S | 177 | M177del | ATG | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 177 | M177del | ATG | --- | 1 | 1 | P.1.10 | 0.000269 |
S | 177 | M177I | atG | atC | 1 | 1 | P.1.12 | 0.000484 |
S | 177 | M177I | atG | atC | 1 | 1 | P.1.4 | 0.000977 |
S | 177 | M177I | atG | atC | 1 | 1 | Q.6 | 0.006623 |
S | 177 | M177I | atG | atC | 1 | 1 | W.1 | 0.008696 |
S | 177 | M177I | atG | atC | 1 | 1 | Y.1 | 0.012821 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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