CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 176 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S176L176FnonsynCttTtt95509550122088-22090

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S176L176FCttTtt95509550All0.001827
S176L176FCttTtt38533853B.1.1.70.003449
S176L176FCttTtt10921092B.1.177.170.896552
S176L176FCttTtt394394B.1.6090.188878
S176L176FCttTtt347347AY.40.00054
S176L176FCttTtt309309AY.250.001859
S176L176FCttTtt280280AY.440.001704
S176L176FCttTtt252252B.1.617.20.000949
S176L176FCttTtt199199B.1.20.001752
S176L176FCttTtt196196B.1.4290.004612
S176L176FCttTtt148148AY.1030.000919
S176L176FCttTtt105105B.1.4160.133249
S176L176FCttTtt9696B.1.1770.001264
S176L176FCttTtt9595Q.80.015666
S176L176FCttTtt9393B.1.6310.313131
S176L176FCttTtt9292P.10.001449
S176L176FCttTtt8484B.10.000769
S176L176FCttTtt8484B.1.351.20.025416
S176L176FCttTtt6666B.1.177.540.040024
S176L176FCttTtt6060AY.29.10.01323
S176L176FCttTtt5858AY.30.000577
S176L176FCttTtt5656AY.1020.001485
S176L176FCttTtt5555B.1.177.870.040029
S176L176FCttTtt5151B.1.1.630.019676
S176L176FCttTtt4949B.1.177.350.033863
S176L176FCttTtt4949B.1.2400.010563
S176L176FCttTtt4545AY.430.000199
S176L176FCttTtt4343B.1.10.00078
S176L176FCttTtt4242B.1.1.5190.001668
S176L176FCttTtt4141AY.420.001649
S176L176FCttTtt4040B.1.1600.001248
S176L176FCttTtt3939B.1.1.3940.95122
S176L176FCttTtt3434B.1.4270.001717
S176L176FCttTtt3030AY.1180.001879
S176L176FCttTtt2929AY.50.000599
S176L176FCttTtt2929B.1.1.2220.005916
S176L176FCttTtt2929B.1.5960.002527
S176L176FCttTtt2727B.1.5260.000635
S176L176FCttTtt2626C.36.30.014748
S176L176FCttTtt2525AY.200.000972
S176L176FCttTtt2525B.1.1.330.010522
S176L176FCttTtt2525B.400.009107
S176L176FCttTtt2424C.370.002786
S176L176FCttTtt2121AY.390.000519
S176L176FCttTtt2121B.1.3510.000624
S176L176FCttTtt2121R.10.00189
S176L176FCttTtt1919AY.290.0003
S176L176FCttTtt1919B.1.2210.00135
S176L176FCttTtt1818B.1.1.1530.019715
S176L176FCttTtt1818B.1.2580.001198
S176L176FCttTtt1818B.1.5870.034156
S176L176FCttTtt1818B.1.6210.001593
S176L176FCttTtt1717Q.10.002148
S176L176FCttTtt1616B.1.177.420.014311
S176L176FCttTtt1616B.1.6280.005638
S176L176FCttTtt1414B.1.2340.001847
S176L176FCttTtt1313B.1.360.001897
S176L176FCttTtt1212AY.3.10.001023
S176L176FCttTtt1212B.1.177.440.006227
S176L176FCttTtt1212B.1.177.810.002272
S176L176FCttTtt1212N.50.021201
S176L176FCttTtt1111A.270.018212
S176L176FCttTtt1111B.1.1.1280.078014
S176L176FCttTtt1111B.1.5750.003337
S176L176FCttTtt1010A.2.5.10.048077
S176L176FCttTtt1010AY.9.20.000367
S176L176FCttTtt1010B.1.2650.012706
S176L176FCttTtt1010B.1.5250.001132
S176L176FCttTtt1010C.360.009107
S176L176FCttTtt99AY.890.044118
S176L176FCttTtt99B.1.2430.000626
S176L176FCttTtt88AY.540.000763
S176L176FCttTtt88B.1.1.3060.003507
S176L176FCttTtt88B.1.2380.119403
S176L176FCttTtt77AY.470.000218
S176L176FCttTtt77B0.000895
S176L176FCttTtt77B.1.258.170.000728
S176L176FCttTtt77B.1.5950.001827
S176L176FCttTtt77P.1.140.000335
S176L176FCttTtt66A.23.10.004225
S176L176FCttTtt66AY.1000.000276
S176L176FCttTtt66AY.610.000629
S176L176FCttTtt66B.1.1.370.001157
S176L176FCttTtt66B.1.1.4340.002091
S176L176FCttTtt66B.1.1.700.002046
S176L176FCttTtt66B.1.1110.007051
S176L176FCttTtt66B.1.5800.02439
S176L176FCttTtt66B.1.617.10.000774
S176L176FCttTtt66N.90.035714
S176L176FCttTtt66P.1.170.000971
S176L176FCttTtt55AY.1190.000177
S176L176FCttTtt55AY.1200.000186
S176L176FCttTtt55B.1.30.013089
S176L176FCttTtt55B.1.36.180.002101
S176L176FCttTtt55B.1.36.290.002587
S176L176FCttTtt55B.1.3960.003529
S176L176FCttTtt55P.1.10.001588
S176L176FCttTtt55P.20.000933
S176L176FCttTtt44A0.001548
S176L176FCttTtt44AY.60.000165
S176L176FCttTtt44AY.99.20.000369
S176L176FCttTtt44B.1.1.3480.003185
S176L176FCttTtt44B.1.1.4620.034483
S176L176FCttTtt44B.1.177.210.000306
S176L176FCttTtt44B.1.3490.002859
S176L176FCttTtt44B.1.6370.000292
S176L176FCttTtt44B.1.9.40.02454
S176L176FCttTtt44D.20.0003
S176L176FCttTtt44P.1.70.001277
S176L176FCttTtt33A.280.007937
S176L176FCttTtt33AY.1130.000427
S176L176FCttTtt33AY.1170.000254
S176L176FCttTtt33AY.260.000085
S176L176FCttTtt33AY.4.20.000065
S176L176FCttTtt33AY.450.000365
S176L176FCttTtt33B.1.1.2140.000166
S176L176FCttTtt33B.1.1.2180.023077
S176L176FCttTtt33B.1.1.3170.001235
S176L176FCttTtt33B.1.1.4320.003797
S176L176FCttTtt33B.1.160.110.017143
S176L176FCttTtt33B.1.2320.001612
S176L176FCttTtt33B.1.36.10.003421
S176L176FCttTtt33B.1.36.170.001482
S176L176FCttTtt33B.1.3670.002377
S176L176FCttTtt33B.1.3750.002459
S176L176FCttTtt33B.1.6270.006061
S176L176FCttTtt33B.1.840.0625
S176L176FCttTtt33P.1.120.001452
S176L176FCttTtt33P.1.150.000697
S176L176FCttTtt22AD.20.000438
S176L176FCttTtt22AY.120.10.000642
S176L176FCttTtt22AY.1210.000271
S176L176FCttTtt22AY.140.000176
S176L176FCttTtt22AY.240.000862
S176L176FCttTtt22AY.5.40.000553
S176L176FCttTtt22AY.530.000575
S176L176FCttTtt22AY.590.001059
S176L176FCttTtt22AY.650.001066
S176L176FCttTtt22AY.980.000158
S176L176FCttTtt22B.1.1.2160.001781
S176L176FCttTtt22B.1.1.2580.006515
S176L176FCttTtt22B.1.1.2910.001485
S176L176FCttTtt22B.1.1.2940.002532
S176L176FCttTtt22B.1.1.3180.000604
S176L176FCttTtt22B.1.1.4200.002012
S176L176FCttTtt22B.1.1.500.001358
S176L176FCttTtt22B.1.1.80.007168
S176L176FCttTtt22B.1.1460.008475
S176L176FCttTtt22B.1.160.320.008584
S176L176FCttTtt22B.1.177.160.001329
S176L176FCttTtt22B.1.177.40.000422
S176L176FCttTtt22B.1.177.750.002081
S176L176FCttTtt22B.1.3020.026667
S176L176FCttTtt22B.1.4220.001625
S176L176FCttTtt22B.1.438.10.000215
S176L176FCttTtt22B.1.466.20.000782
S176L176FCttTtt22B.1.5170.000854
S176L176FCttTtt22B.1.5440.012048
S176L176FCttTtt22B.1.5770.001375
S176L176FCttTtt22B.1.5820.000981
S176L176FCttTtt22B.1.621.10.001012
S176L176FCttTtt22B.1.6230.001073
S176L176FCttTtt22Q.30.00029
S176L176FCttTtt110.055556
S176L176FCttTtt11A.110.058824
S176L176FCttTtt11A.2.5.20.001572
S176L176FCttTtt11AY.1050.000643
S176L176FCttTtt11AY.1070.000466
S176L176FCttTtt11AY.1090.00074
S176L176FCttTtt11AY.1140.000231
S176L176FCttTtt11AY.120.20.001285
S176L176FCttTtt11AY.130.000161
S176L176FCttTtt11AY.150.002222
S176L176FCttTtt11AY.270.000065
S176L176FCttTtt11AY.350.000233
S176L176FCttTtt11AY.380.000499
S176L176FCttTtt11AY.4.2.10.000149
S176L176FCttTtt11AY.4.40.000409
S176L176FCttTtt11AY.410.000294
S176L176FCttTtt11AY.460.000104
S176L176FCttTtt11AY.46.40.000165
S176L176FCttTtt11AY.46.60.000072
S176L176FCttTtt11AY.550.000917
S176L176FCttTtt11AY.7.20.000559
S176L176FCttTtt11AY.740.000116
S176L176FCttTtt11AY.750.000056
S176L176FCttTtt11AY.780.001541
S176L176FCttTtt11AY.80.000606
S176L176FCttTtt11AY.850.000427
S176L176FCttTtt11AY.880.000884
S176L176FCttTtt11AY.90.000068
S176L176FCttTtt11AY.9.10.000084
S176L176FCttTtt11AY.930.000273
S176L176FCttTtt11B.1.1.1010.01
S176L176FCttTtt11B.1.1.1320.014925
S176L176FCttTtt11B.1.1.1890.001513
S176L176FCttTtt11B.1.1.1920.002309
S176L176FCttTtt11B.1.1.2260.005814
S176L176FCttTtt11B.1.1.2430.004082
S176L176FCttTtt11B.1.1.250.000569
S176L176FCttTtt11B.1.1.280.000311
S176L176FCttTtt11B.1.1.2970.002237
S176L176FCttTtt11B.1.1.3050.003861
S176L176FCttTtt11B.1.1.3490.010309
S176L176FCttTtt11B.1.1.3540.004386
S176L176FCttTtt11B.1.1.3720.000689
S176L176FCttTtt11B.1.1.3760.005952
S176L176FCttTtt11B.1.1.390.00051
S176L176FCttTtt11B.1.1.4160.000905
S176L176FCttTtt11B.1.1.4520.111111
S176L176FCttTtt11B.1.1.4580.041667
S176L176FCttTtt11B.1.1.4870.005587
S176L176FCttTtt11B.1.1.560.017857
S176L176FCttTtt11B.1.1.930.025641
S176L176FCttTtt11B.1.1030.019231
S176L176FCttTtt11B.1.1470.000756
S176L176FCttTtt11B.1.160.200.008929
S176L176FCttTtt11B.1.160.220.006757
S176L176FCttTtt11B.1.160.70.002079
S176L176FCttTtt11B.1.177.120.000152
S176L176FCttTtt11B.1.177.570.000281
S176L176FCttTtt11B.1.177.600.000218
S176L176FCttTtt11B.1.177.620.001192
S176L176FCttTtt11B.1.177.650.000665
S176L176FCttTtt11B.1.177.70.000165
S176L176FCttTtt11B.1.177.720.00339
S176L176FCttTtt11B.1.177.730.000566
S176L176FCttTtt11B.1.177.830.001481
S176L176FCttTtt11B.1.177.860.000183
S176L176FCttTtt11B.1.2100.002132
S176L176FCttTtt11B.1.2230.002778
S176L176FCttTtt11B.1.240.20.030303
S176L176FCttTtt11B.1.2410.000812
S176L176FCttTtt11B.1.258.190.007092
S176L176FCttTtt11B.1.2790.000514
S176L176FCttTtt11B.1.3110.000275
S176L176FCttTtt11B.1.36.220.001208
S176L176FCttTtt11B.1.36.310.001751
S176L176FCttTtt11B.1.36.370.002778
S176L176FCttTtt11B.1.36.380.001642
S176L176FCttTtt11B.1.3690.000285
S176L176FCttTtt11B.1.3950.007042
S176L176FCttTtt11B.1.4080.00369
S176L176FCttTtt11B.1.4090.000781
S176L176FCttTtt11B.1.440.008333
S176L176FCttTtt11B.1.4680.005714
S176L176FCttTtt11B.1.4970.000315
S176L176FCttTtt11B.1.5600.00463
S176L176FCttTtt11B.1.5610.000397
S176L176FCttTtt11B.1.5640.000426
S176L176FCttTtt11B.1.5670.003333
S176L176FCttTtt11B.1.5680.001111
S176L176FCttTtt11B.1.6180.004032
S176L176FCttTtt11B.1.930.000934
S176L176FCttTtt11B.30.000831
S176L176FCttTtt11B.60.00091
S176L176FCttTtt11B.6.60.000889
S176L176FCttTtt11C.110.010638
S176L176FCttTtt11L.30.003546
S176L176FCttTtt11P.70.004367
S176L176FCttTtt11W.10.008696
S176L176FCttTtt11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.