CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 176 | L176F | nonsyn | Ctt | Ttt | 9550 | 9550 | 1 | 22088-22090 | |
S | 176 | L176del | del | CTT | --- | 218 | 218 | 1 | 22088-22090 | |
S | 176 | L176L | syn | ctT | ctC | 115 | 106 | 0.921739 | 22088-22090 | |
S | 176 | L176L | syn | ctT | ctG | 115 | 4 | 0.0347826 | 22088-22090 | |
S | 176 | L176L | syn | ctT | ctA | 115 | 3 | 0.026087 | 22088-22090 | |
S | 176 | L176L | syn | CtT | TtG | 115 | 1 | 0.00869565 | 22088-22090 | |
S | 176 | L176L | syn | CtT | TtA | 115 | 1 | 0.00869565 | 22088-22090 | |
S | 176 | L176I | nonsyn | Ctt | Att | 99 | 97 | 0.979798 | 22088-22090 | |
S | 176 | L176I | nonsyn | CtT | AtC | 99 | 2 | 0.020202 | 22088-22090 | |
S | 176 | L176P | nonsyn | cTt | cCt | 86 | 86 | 1 | 22088-22090 | |
S | 176 | L176H | nonsyn | cTt | cAt | 47 | 45 | 0.957447 | 22088-22090 | |
S | 176 | L176H | nonsyn | cTT | cAC | 47 | 2 | 0.0425532 | 22088-22090 | |
S | 176 | L176V | nonsyn | Ctt | Gtt | 24 | 24 | 1 | 22088-22090 | |
S | 176 | L176del1 | del | Ctt | -tt | 23 | 21 | 0.913043 | 22088-22090 | |
S | 176 | L176del1 | del | CtT | Tt- | 23 | 1 | 0.0434783 | 22088-22090 | |
S | 176 | L176del1 | del | CTt | -Nt | 23 | 1 | 0.0434783 | 22088-22090 | |
S | 176 | L176R | nonsyn | cTt | cGt | 11 | 10 | 0.909091 | 22088-22090 | |
S | 176 | L176R | nonsyn | cTT | cGG | 11 | 1 | 0.0909091 | 22088-22090 | |
S | 176 | L176S | nonsyn | CTt | TCt | 7 | 6 | 0.857143 | 22088-22090 | |
S | 176 | L176S | nonsyn | CTT | TCC | 7 | 1 | 0.142857 | 22088-22090 | |
S | 176 | L176N | nonsyn | CTt | AAt | 4 | 2 | 0.5 | 22088-22090 | |
S | 176 | L176N | nonsyn | CTT | AAC | 4 | 2 | 0.5 | 22088-22090 | |
S | 176 | L176del2 | del | cTT | c-- | 2 | 1 | 0.5 | 22088-22090 | |
S | 176 | L176del2 | del | CTT | --N | 2 | 1 | 0.5 | 22088-22090 | |
S | 176 | L176T | nonsyn | CTt | ACt | 1 | 1 | 1 | 22088-22090 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 176 | L176F | Ctt | Ttt | 9550 | 9550 | All | 0.001827 |
S | 176 | L176F | Ctt | Ttt | 3853 | 3853 | B.1.1.7 | 0.003449 |
S | 176 | L176F | Ctt | Ttt | 1092 | 1092 | B.1.177.17 | 0.896552 |
S | 176 | L176F | Ctt | Ttt | 394 | 394 | B.1.609 | 0.188878 |
S | 176 | L176F | Ctt | Ttt | 347 | 347 | AY.4 | 0.00054 |
S | 176 | L176F | Ctt | Ttt | 309 | 309 | AY.25 | 0.001859 |
S | 176 | L176F | Ctt | Ttt | 280 | 280 | AY.44 | 0.001704 |
S | 176 | L176F | Ctt | Ttt | 252 | 252 | B.1.617.2 | 0.000949 |
S | 176 | L176del | CTT | --- | 218 | 218 | All | 0.000042 |
S | 176 | L176F | Ctt | Ttt | 199 | 199 | B.1.2 | 0.001752 |
S | 176 | L176F | Ctt | Ttt | 196 | 196 | B.1.429 | 0.004612 |
S | 176 | L176F | Ctt | Ttt | 148 | 148 | AY.103 | 0.000919 |
S | 176 | L176L | ctT | ctC | 106 | 115 | All | 0.00002 |
S | 176 | L176L | ctT | ctG | 4 | 115 | All | 0.000001 |
S | 176 | L176L | ctT | ctA | 3 | 115 | All | 0.000001 |
S | 176 | L176L | CtT | TtG | 1 | 115 | All | 0 |
S | 176 | L176L | CtT | TtA | 1 | 115 | All | 0 |
S | 176 | L176F | Ctt | Ttt | 105 | 105 | B.1.416 | 0.133249 |
S | 176 | L176I | Ctt | Att | 97 | 99 | All | 0.000019 |
S | 176 | L176I | CtT | AtC | 2 | 99 | All | 0 |
S | 176 | L176F | Ctt | Ttt | 96 | 96 | B.1.177 | 0.001264 |
S | 176 | L176F | Ctt | Ttt | 95 | 95 | Q.8 | 0.015666 |
S | 176 | L176F | Ctt | Ttt | 93 | 93 | B.1.631 | 0.313131 |
S | 176 | L176F | Ctt | Ttt | 92 | 92 | P.1 | 0.001449 |
S | 176 | L176P | cTt | cCt | 86 | 86 | All | 0.000016 |
S | 176 | L176F | Ctt | Ttt | 84 | 84 | B.1 | 0.000769 |
S | 176 | L176F | Ctt | Ttt | 84 | 84 | B.1.351.2 | 0.025416 |
S | 176 | L176F | Ctt | Ttt | 66 | 66 | B.1.177.54 | 0.040024 |
S | 176 | L176F | Ctt | Ttt | 60 | 60 | AY.29.1 | 0.01323 |
S | 176 | L176F | Ctt | Ttt | 58 | 58 | AY.3 | 0.000577 |
S | 176 | L176F | Ctt | Ttt | 56 | 56 | AY.102 | 0.001485 |
S | 176 | L176F | Ctt | Ttt | 55 | 55 | B.1.177.87 | 0.040029 |
S | 176 | L176F | Ctt | Ttt | 51 | 51 | B.1.1.63 | 0.019676 |
S | 176 | L176F | Ctt | Ttt | 49 | 49 | B.1.177.35 | 0.033863 |
S | 176 | L176F | Ctt | Ttt | 49 | 49 | B.1.240 | 0.010563 |
S | 176 | L176H | cTt | cAt | 45 | 47 | All | 0.000009 |
S | 176 | L176H | cTT | cAC | 2 | 47 | All | 0 |
S | 176 | L176F | Ctt | Ttt | 45 | 45 | AY.43 | 0.000199 |
S | 176 | L176F | Ctt | Ttt | 43 | 43 | B.1.1 | 0.00078 |
S | 176 | L176F | Ctt | Ttt | 42 | 42 | B.1.1.519 | 0.001668 |
S | 176 | L176F | Ctt | Ttt | 41 | 41 | AY.42 | 0.001649 |
S | 176 | L176L | ctT | ctC | 41 | 41 | B.1.36.34 | 0.87234 |
S | 176 | L176F | Ctt | Ttt | 40 | 40 | B.1.160 | 0.001248 |
S | 176 | L176F | Ctt | Ttt | 39 | 39 | B.1.1.394 | 0.95122 |
S | 176 | L176F | Ctt | Ttt | 34 | 34 | B.1.427 | 0.001717 |
S | 176 | L176F | Ctt | Ttt | 30 | 30 | AY.118 | 0.001879 |
S | 176 | L176F | Ctt | Ttt | 29 | 29 | AY.5 | 0.000599 |
S | 176 | L176F | Ctt | Ttt | 29 | 29 | B.1.1.222 | 0.005916 |
S | 176 | L176F | Ctt | Ttt | 29 | 29 | B.1.596 | 0.002527 |
S | 176 | L176del | CTT | --- | 27 | 27 | AY.46 | 0.00281 |
S | 176 | L176F | Ctt | Ttt | 27 | 27 | B.1.526 | 0.000635 |
S | 176 | L176del | CTT | --- | 26 | 26 | B.1.1.7 | 0.000023 |
S | 176 | L176F | Ctt | Ttt | 26 | 26 | C.36.3 | 0.014748 |
S | 176 | L176F | Ctt | Ttt | 25 | 25 | AY.20 | 0.000972 |
S | 176 | L176F | Ctt | Ttt | 25 | 25 | B.1.1.33 | 0.010522 |
S | 176 | L176F | Ctt | Ttt | 25 | 25 | B.40 | 0.009107 |
S | 176 | L176V | Ctt | Gtt | 24 | 24 | All | 0.000005 |
S | 176 | L176F | Ctt | Ttt | 24 | 24 | C.37 | 0.002786 |
S | 176 | L176del1 | Ctt | -tt | 21 | 23 | All | 0.000004 |
S | 176 | L176del1 | CtT | Tt- | 1 | 23 | All | 0 |
S | 176 | L176del1 | CTt | -Nt | 1 | 23 | All | 0 |
S | 176 | L176F | Ctt | Ttt | 21 | 21 | AY.39 | 0.000519 |
S | 176 | L176P | cTt | cCt | 21 | 21 | B.1.1.7 | 0.000019 |
S | 176 | L176F | Ctt | Ttt | 21 | 21 | B.1.351 | 0.000624 |
S | 176 | L176F | Ctt | Ttt | 21 | 21 | R.1 | 0.00189 |
S | 176 | L176F | Ctt | Ttt | 19 | 19 | AY.29 | 0.0003 |
S | 176 | L176F | Ctt | Ttt | 19 | 19 | B.1.221 | 0.00135 |
S | 176 | L176F | Ctt | Ttt | 18 | 18 | B.1.1.153 | 0.019715 |
S | 176 | L176F | Ctt | Ttt | 18 | 18 | B.1.258 | 0.001198 |
S | 176 | L176F | Ctt | Ttt | 18 | 18 | B.1.587 | 0.034156 |
S | 176 | L176F | Ctt | Ttt | 18 | 18 | B.1.621 | 0.001593 |
S | 176 | L176del | CTT | --- | 17 | 17 | AY.43 | 0.000075 |
S | 176 | L176F | Ctt | Ttt | 17 | 17 | Q.1 | 0.002148 |
S | 176 | L176F | Ctt | Ttt | 16 | 16 | B.1.177.42 | 0.014311 |
S | 176 | L176H | cTt | cAt | 16 | 16 | B.1.617.2 | 0.00006 |
S | 176 | L176F | Ctt | Ttt | 16 | 16 | B.1.628 | 0.005638 |
S | 176 | L176del | CTT | --- | 16 | 16 | P.1.15 | 0.003717 |
S | 176 | L176F | Ctt | Ttt | 14 | 14 | B.1.234 | 0.001847 |
S | 176 | L176F | Ctt | Ttt | 13 | 13 | B.1.36 | 0.001897 |
S | 176 | L176P | cTt | cCt | 13 | 13 | B.1.525 | 0.001471 |
S | 176 | L176H | cTt | cAt | 12 | 12 | AY.119 | 0.000424 |
S | 176 | L176F | Ctt | Ttt | 12 | 12 | AY.3.1 | 0.001023 |
S | 176 | L176F | Ctt | Ttt | 12 | 12 | B.1.177.44 | 0.006227 |
S | 176 | L176F | Ctt | Ttt | 12 | 12 | B.1.177.81 | 0.002272 |
S | 176 | L176F | Ctt | Ttt | 12 | 12 | N.5 | 0.021201 |
S | 176 | L176del | CTT | --- | 12 | 12 | P.1 | 0.000189 |
S | 176 | L176F | Ctt | Ttt | 11 | 11 | A.27 | 0.018212 |
S | 176 | L176R | cTt | cGt | 10 | 11 | All | 0.000002 |
S | 176 | L176R | cTT | cGG | 1 | 11 | All | 0 |
S | 176 | L176del | CTT | --- | 11 | 11 | AY.4 | 0.000017 |
S | 176 | L176F | Ctt | Ttt | 11 | 11 | B.1.1.128 | 0.078014 |
S | 176 | L176F | Ctt | Ttt | 11 | 11 | B.1.575 | 0.003337 |
S | 176 | L176P | cTt | cCt | 11 | 11 | P.1 | 0.000173 |
S | 176 | L176F | Ctt | Ttt | 10 | 10 | A.2.5.1 | 0.048077 |
S | 176 | L176F | Ctt | Ttt | 10 | 10 | AY.9.2 | 0.000367 |
S | 176 | L176L | ctT | ctC | 10 | 10 | B.1.1.7 | 0.000009 |
S | 176 | L176I | Ctt | Att | 10 | 10 | B.1.1.7 | 0.000009 |
S | 176 | L176F | Ctt | Ttt | 10 | 10 | B.1.265 | 0.012706 |
S | 176 | L176F | Ctt | Ttt | 10 | 10 | B.1.525 | 0.001132 |
S | 176 | L176F | Ctt | Ttt | 10 | 10 | C.36 | 0.009107 |
S | 176 | L176I | Ctt | Att | 9 | 9 | AY.26 | 0.000255 |
S | 176 | L176F | Ctt | Ttt | 9 | 9 | AY.89 | 0.044118 |
S | 176 | L176del | CTT | --- | 9 | 9 | B.1 | 0.000082 |
S | 176 | L176F | Ctt | Ttt | 9 | 9 | B.1.243 | 0.000626 |
S | 176 | L176F | Ctt | Ttt | 8 | 8 | AY.54 | 0.000763 |
S | 176 | L176I | Ctt | Att | 8 | 8 | B.1 | 0.000073 |
S | 176 | L176F | Ctt | Ttt | 8 | 8 | B.1.1.306 | 0.003507 |
S | 176 | L176F | Ctt | Ttt | 8 | 8 | B.1.238 | 0.119403 |
S | 176 | L176del | CTT | --- | 8 | 8 | C.37 | 0.000929 |
S | 176 | L176S | CTt | TCt | 6 | 7 | All | 0.000001 |
S | 176 | L176S | CTT | TCC | 1 | 7 | All | 0 |
S | 176 | L176F | Ctt | Ttt | 7 | 7 | AY.47 | 0.000218 |
S | 176 | L176F | Ctt | Ttt | 7 | 7 | B | 0.000895 |
S | 176 | L176F | Ctt | Ttt | 7 | 7 | B.1.258.17 | 0.000728 |
S | 176 | L176F | Ctt | Ttt | 7 | 7 | B.1.595 | 0.001827 |
S | 176 | L176F | Ctt | Ttt | 7 | 7 | P.1.14 | 0.000335 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | A.23.1 | 0.004225 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | AY.100 | 0.000276 |
S | 176 | L176V | Ctt | Gtt | 6 | 6 | AY.33 | 0.000401 |
S | 176 | L176I | Ctt | Att | 6 | 6 | AY.43 | 0.000027 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | AY.61 | 0.000629 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | B.1.1.37 | 0.001157 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | B.1.1.434 | 0.002091 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | B.1.1.70 | 0.002046 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | B.1.111 | 0.007051 |
S | 176 | L176del | CTT | --- | 6 | 6 | B.1.177 | 0.000079 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | B.1.580 | 0.02439 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | B.1.617.1 | 0.000774 |
S | 176 | L176del | CTT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
S | 176 | L176L | ctT | ctC | 5 | 6 | B.1.617.2 | 0.000019 |
S | 176 | L176L | ctT | ctA | 1 | 6 | B.1.617.2 | 0.000004 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | N.9 | 0.035714 |
S | 176 | L176F | Ctt | Ttt | 6 | 6 | P.1.17 | 0.000971 |
S | 176 | L176I | Ctt | Att | 3 | 5 | 0.166667 | |
S | 176 | L176I | CtT | AtC | 2 | 5 | 0.111111 | |
S | 176 | L176F | Ctt | Ttt | 5 | 5 | AY.119 | 0.000177 |
S | 176 | L176F | Ctt | Ttt | 5 | 5 | AY.120 | 0.000186 |
S | 176 | L176del | CTT | --- | 5 | 5 | AY.25 | 0.00003 |
S | 176 | L176P | cTt | cCt | 5 | 5 | AY.4 | 0.000008 |
S | 176 | L176del | CTT | --- | 5 | 5 | AY.4.5 | 0.000537 |
S | 176 | L176V | Ctt | Gtt | 5 | 5 | AY.9.1 | 0.000419 |
S | 176 | L176P | cTt | cCt | 5 | 5 | B.1 | 0.000046 |
S | 176 | L176F | Ctt | Ttt | 5 | 5 | B.1.3 | 0.013089 |
S | 176 | L176F | Ctt | Ttt | 5 | 5 | B.1.36.18 | 0.002101 |
S | 176 | L176F | Ctt | Ttt | 5 | 5 | B.1.36.29 | 0.002587 |
S | 176 | L176F | Ctt | Ttt | 5 | 5 | B.1.396 | 0.003529 |
S | 176 | L176F | Ctt | Ttt | 5 | 5 | P.1.1 | 0.001588 |
S | 176 | L176F | Ctt | Ttt | 5 | 5 | P.2 | 0.000933 |
S | 176 | L176H | cTt | cAt | 2 | 4 | 0.111111 | |
S | 176 | L176H | cTT | cAC | 2 | 4 | 0.111111 | |
S | 176 | L176N | CTt | AAt | 2 | 4 | 0.111111 | |
S | 176 | L176N | CTT | AAC | 2 | 4 | 0.111111 | |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | A | 0.001548 |
S | 176 | L176N | CTt | AAt | 2 | 4 | All | 0 |
S | 176 | L176N | CTT | AAC | 2 | 4 | All | 0 |
S | 176 | L176L | ctT | ctC | 4 | 4 | AY.25 | 0.000024 |
S | 176 | L176P | cTt | cCt | 4 | 4 | AY.3.1 | 0.000341 |
S | 176 | L176del | CTT | --- | 4 | 4 | AY.44 | 0.000024 |
S | 176 | L176L | ctT | ctC | 4 | 4 | AY.44 | 0.000024 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | AY.6 | 0.000165 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | AY.99.2 | 0.000369 |
S | 176 | L176del | CTT | --- | 4 | 4 | B.1.1 | 0.000073 |
S | 176 | L176L | ctT | ctC | 3 | 4 | B.1.1 | 0.000054 |
S | 176 | L176L | ctT | ctA | 1 | 4 | B.1.1 | 0.000018 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.1.348 | 0.003185 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.1.462 | 0.034483 |
S | 176 | L176H | cTt | cAt | 4 | 4 | B.1.1.7 | 0.000004 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.177.21 | 0.000306 |
S | 176 | L176I | Ctt | Att | 4 | 4 | B.1.2 | 0.000035 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.349 | 0.002859 |
S | 176 | L176I | Ctt | Att | 4 | 4 | B.1.351 | 0.000119 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.637 | 0.000292 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.9.4 | 0.02454 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | D.2 | 0.0003 |
S | 176 | L176F | Ctt | Ttt | 4 | 4 | P.1.7 | 0.001277 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | A.28 | 0.007937 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.113 | 0.000427 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.117 | 0.000254 |
S | 176 | L176I | Ctt | Att | 3 | 3 | AY.23 | 0.000209 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.26 | 0.000085 |
S | 176 | L176L | ctT | ctC | 3 | 3 | AY.4 | 0.000005 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.4.2 | 0.000065 |
S | 176 | L176I | Ctt | Att | 3 | 3 | AY.42 | 0.000121 |
S | 176 | L176L | ctT | ctC | 3 | 3 | AY.43 | 0.000013 |
S | 176 | L176P | cTt | cCt | 3 | 3 | AY.44 | 0.000018 |
S | 176 | L176del1 | Ctt | -tt | 2 | 3 | AY.44 | 0.000012 |
S | 176 | L176del1 | CtT | Tt- | 1 | 3 | AY.44 | 0.000006 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.45 | 0.000365 |
S | 176 | L176L | ctT | ctC | 2 | 3 | AY.5 | 0.000041 |
S | 176 | L176L | ctT | ctG | 1 | 3 | AY.5 | 0.000021 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.1.214 | 0.000166 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.1.218 | 0.023077 |
S | 176 | L176I | Ctt | Att | 3 | 3 | B.1.1.222 | 0.000612 |
S | 176 | L176L | ctT | ctC | 3 | 3 | B.1.1.312 | 0.005736 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.1.317 | 0.001235 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.1.432 | 0.003797 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.160.11 | 0.017143 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.232 | 0.001612 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.36.1 | 0.003421 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.36.17 | 0.001482 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.367 | 0.002377 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.375 | 0.002459 |
S | 176 | L176I | Ctt | Att | 3 | 3 | B.1.416 | 0.003807 |
S | 176 | L176H | cTt | cAt | 3 | 3 | B.1.526 | 0.000071 |
S | 176 | L176del1 | Ctt | -tt | 3 | 3 | B.1.596 | 0.000261 |
S | 176 | L176P | cTt | cCt | 3 | 3 | B.1.617.2 | 0.000011 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.627 | 0.006061 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.84 | 0.0625 |
S | 176 | L176I | Ctt | Att | 3 | 3 | B.40 | 0.001093 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | P.1.12 | 0.001452 |
S | 176 | L176F | Ctt | Ttt | 3 | 3 | P.1.15 | 0.000697 |
S | 176 | L176L | ctT | ctC | 2 | 2 | 0.111111 | |
S | 176 | L176I | Ctt | Att | 2 | 2 | A.2.4 | 0.006734 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AD.2 | 0.000438 |
S | 176 | L176del2 | cTT | c-- | 1 | 2 | All | 0 |
S | 176 | L176del2 | CTT | --N | 1 | 2 | All | 0 |
S | 176 | L176L | ctT | ctC | 2 | 2 | AY.116.1 | 0.000623 |
S | 176 | L176del | CTT | --- | 2 | 2 | AY.120 | 0.000074 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.120.1 | 0.000642 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.121 | 0.000271 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.14 | 0.000176 |
S | 176 | L176del | CTT | --- | 2 | 2 | AY.23 | 0.000139 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.24 | 0.000862 |
S | 176 | L176del | CTT | --- | 2 | 2 | AY.29 | 0.000032 |
S | 176 | L176del | CTT | --- | 2 | 2 | AY.33 | 0.000134 |
S | 176 | L176P | cTt | cCt | 2 | 2 | AY.39.1 | 0.000079 |
S | 176 | L176H | cTt | cAt | 2 | 2 | AY.4 | 0.000003 |
S | 176 | L176I | Ctt | Att | 2 | 2 | AY.4 | 0.000003 |
S | 176 | L176P | cTt | cCt | 2 | 2 | AY.43 | 0.000009 |
S | 176 | L176V | Ctt | Gtt | 2 | 2 | AY.44 | 0.000012 |
S | 176 | L176del | CTT | --- | 2 | 2 | AY.46.4 | 0.000329 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.5.4 | 0.000553 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.53 | 0.000575 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.59 | 0.001059 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.65 | 0.001066 |
S | 176 | L176I | Ctt | Att | 2 | 2 | AY.69 | 0.000373 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.98 | 0.000158 |
S | 176 | L176L | ctT | ctC | 1 | 2 | B.1 | 0.000009 |
S | 176 | L176L | ctT | ctG | 1 | 2 | B.1 | 0.000009 |
S | 176 | L176I | Ctt | Att | 2 | 2 | B.1.1 | 0.000036 |
S | 176 | L176L | ctT | ctC | 2 | 2 | B.1.1.170 | 0.002494 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.216 | 0.001781 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.258 | 0.006515 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.291 | 0.001485 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.294 | 0.002532 |
S | 176 | L176del | CTT | --- | 2 | 2 | B.1.1.315 | 0.016949 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.318 | 0.000604 |
S | 176 | L176I | Ctt | Att | 2 | 2 | B.1.1.39 | 0.001019 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.420 | 0.002012 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.50 | 0.001358 |
S | 176 | L176V | Ctt | Gtt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.8 | 0.007168 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.146 | 0.008475 |
S | 176 | L176del | CTT | --- | 2 | 2 | B.1.160 | 0.000062 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.160.32 | 0.008584 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.177.16 | 0.001329 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.177.4 | 0.000422 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.177.75 | 0.002081 |
S | 176 | L176del | CTT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 176 | L176L | ctT | ctC | 2 | 2 | B.1.2 | 0.000018 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.302 | 0.026667 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.422 | 0.001625 |
S | 176 | L176I | Ctt | Att | 2 | 2 | B.1.429 | 0.000047 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.438.1 | 0.000215 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.466.2 | 0.000782 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.517 | 0.000854 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.544 | 0.012048 |
S | 176 | L176I | Ctt | Att | 2 | 2 | B.1.565 | 0.001621 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.577 | 0.001375 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.582 | 0.000981 |
S | 176 | L176del1 | Ctt | -tt | 2 | 2 | B.1.609 | 0.000959 |
S | 176 | L176R | cTt | cGt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 176 | L176I | Ctt | Att | 2 | 2 | B.1.617.2 | 0.000008 |
S | 176 | L176del | CTT | --- | 2 | 2 | B.1.621 | 0.000177 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.621.1 | 0.001012 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.623 | 0.001073 |
S | 176 | L176del1 | Ctt | -tt | 2 | 2 | C.37 | 0.000232 |
S | 176 | L176L | ctT | ctC | 2 | 2 | D.2 | 0.00015 |
S | 176 | L176del1 | Ctt | -tt | 2 | 2 | P.1 | 0.000032 |
S | 176 | L176del | CTT | --- | 2 | 2 | P.1.7 | 0.000639 |
S | 176 | L176F | Ctt | Ttt | 2 | 2 | Q.3 | 0.00029 |
S | 176 | L176del1 | Ctt | -tt | 2 | 2 | R.1 | 0.00018 |
S | 176 | L176P | cTt | cCt | 1 | 1 | 0.055556 | |
S | 176 | L176T | CTt | ACt | 1 | 1 | 0.055556 | |
S | 176 | L176S | CTt | TCt | 1 | 1 | 0.055556 | |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | 0.055556 | |
S | 176 | L176I | Ctt | Att | 1 | 1 | A | 0.000387 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | A.11 | 0.058824 |
S | 176 | L176del | CTT | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | A.2.5.2 | 0.001572 |
S | 176 | L176T | CTt | ACt | 1 | 1 | All | 0 |
S | 176 | L176P | cTt | cCt | 1 | 1 | AU.3 | 0.00211 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.100 | 0.000046 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.100 | 0.000046 |
S | 176 | L176P | cTt | cCt | 1 | 1 | AY.102 | 0.000027 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.102 | 0.000027 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | AY.102 | 0.000027 |
S | 176 | L176R | cTt | cGt | 1 | 1 | AY.102 | 0.000027 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | AY.103 | 0.000006 |
S | 176 | L176P | cTt | cCt | 1 | 1 | AY.103 | 0.000006 |
S | 176 | L176S | CTt | TCt | 1 | 1 | AY.103 | 0.000006 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.105 | 0.000643 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.107 | 0.000466 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.109 | 0.00074 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | AY.110 | 0.000113 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | AY.111 | 0.000183 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.114 | 0.000231 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.118 | 0.000063 |
S | 176 | L176L | ctT | ctA | 1 | 1 | AY.119 | 0.000035 |
S | 176 | L176P | cTt | cCt | 1 | 1 | AY.120 | 0.000037 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.120.2 | 0.001285 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.121 | 0.000135 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.15 | 0.002222 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.16 | 0.00038 |
S | 176 | L176del1 | Ctt | -tt | 1 | 1 | AY.16 | 0.00038 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.20 | 0.000039 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.23 | 0.00007 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.24 | 0.000431 |
S | 176 | L176H | cTt | cAt | 1 | 1 | AY.25 | 0.000006 |
S | 176 | L176R | cTt | cGt | 1 | 1 | AY.25 | 0.000006 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | AY.26 | 0.000028 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.26 | 0.000028 |
S | 176 | L176P | cTt | cCt | 1 | 1 | AY.26 | 0.000028 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.27 | 0.000065 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.29 | 0.000016 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.3.1 | 0.000085 |
S | 176 | L176P | cTt | cCt | 1 | 1 | AY.30 | 0.000396 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.33 | 0.000067 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.33 | 0.000067 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.35 | 0.000233 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.38 | 0.000499 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.39 | 0.000025 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.39 | 0.000025 |
S | 176 | L176R | cTt | cGt | 1 | 1 | AY.4 | 0.000002 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.4.2 | 0.000022 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.4.4 | 0.000409 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.41 | 0.000294 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.42 | 0.00004 |
S | 176 | L176H | cTt | cAt | 1 | 1 | AY.43 | 0.000004 |
S | 176 | L176del1 | CTt | -Nt | 1 | 1 | AY.43 | 0.000004 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | AY.43 | 0.000004 |
S | 176 | L176del2 | CTT | --N | 1 | 1 | AY.44 | 0.000006 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.44 | 0.000006 |
S | 176 | L176S | CTt | TCt | 1 | 1 | AY.44 | 0.000006 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.46 | 0.000104 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.46 | 0.000104 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.46.1 | 0.001027 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.47 | 0.000031 |
S | 176 | L176S | CTt | TCt | 1 | 1 | AY.49 | 0.003195 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.5 | 0.000021 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.52 | 0.000814 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.55 | 0.000917 |
S | 176 | L176L | ctT | ctG | 1 | 1 | AY.58 | 0.000907 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.59 | 0.00053 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.6 | 0.000041 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 176 | L176L | CtT | TtA | 1 | 1 | AY.61 | 0.000105 |
S | 176 | L176I | Ctt | Att | 1 | 1 | AY.61 | 0.000105 |
S | 176 | L176H | cTt | cAt | 1 | 1 | AY.62 | 0.000436 |
S | 176 | L176S | CTt | TCt | 1 | 1 | AY.69 | 0.000187 |
S | 176 | L176P | cTt | cCt | 1 | 1 | AY.7.1 | 0.000113 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.7.2 | 0.000559 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.7.2 | 0.000559 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.74 | 0.000116 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.75 | 0.000056 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.75 | 0.000056 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.78 | 0.001541 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.79 | 0.001211 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.8 | 0.000606 |
S | 176 | L176del | CTT | --- | 1 | 1 | AY.85 | 0.000427 |
S | 176 | L176R | cTT | cGG | 1 | 1 | AY.85 | 0.000427 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.85 | 0.000427 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.88 | 0.000884 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.9.1 | 0.000084 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.93 | 0.000273 |
S | 176 | L176L | ctT | ctC | 1 | 1 | AY.99.2 | 0.000092 |
S | 176 | L176del | CTT | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B | 0.000128 |
S | 176 | L176R | cTt | cGt | 1 | 1 | B | 0.000128 |
S | 176 | L176del | CTT | --- | 1 | 1 | B | 0.000128 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | B.1 | 0.000009 |
S | 176 | L176P | cTt | cCt | 1 | 1 | B.1.1 | 0.000018 |
S | 176 | L176R | cTt | cGt | 1 | 1 | B.1.1 | 0.000018 |
S | 176 | L176del1 | Ctt | -tt | 1 | 1 | B.1.1 | 0.000018 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.101 | 0.01 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.132 | 0.014925 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.189 | 0.001513 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.192 | 0.002309 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.226 | 0.005814 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.243 | 0.004082 |
S | 176 | L176del1 | Ctt | -tt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.297 | 0.002237 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.305 | 0.003861 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.1.317 | 0.000412 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.349 | 0.010309 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.354 | 0.004386 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.376 | 0.005952 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.416 | 0.000905 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.1.420 | 0.001006 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.1.437 | 0.010417 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.452 | 0.111111 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.458 | 0.041667 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.487 | 0.005587 |
S | 176 | L176L | ctT | ctC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 176 | L176P | cTt | cCt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.56 | 0.017857 |
S | 176 | L176P | cTt | cCt | 1 | 1 | B.1.1.63 | 0.000386 |
S | 176 | L176del1 | Ctt | -tt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 176 | L176R | cTt | cGt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.93 | 0.025641 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.103 | 0.019231 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.139 | 0.000733 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.147 | 0.000756 |
S | 176 | L176R | cTt | cGt | 1 | 1 | B.1.160 | 0.000031 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.160.20 | 0.008929 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.160.22 | 0.006757 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.160.7 | 0.002079 |
S | 176 | L176del2 | cTT | c-- | 1 | 1 | B.1.177 | 0.000013 |
S | 176 | L176P | cTt | cCt | 1 | 1 | B.1.177 | 0.000013 |
S | 176 | L176L | ctT | ctC | 1 | 1 | B.1.177.10 | 0.000878 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 176 | L176del1 | Ctt | -tt | 1 | 1 | B.1.177.17 | 0.000821 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.60 | 0.000218 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.62 | 0.001192 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.65 | 0.000665 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.72 | 0.00339 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.83 | 0.001481 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
S | 176 | L176del1 | Ctt | -tt | 1 | 1 | B.1.2 | 0.000009 |
S | 176 | L176S | CTT | TCC | 1 | 1 | B.1.2 | 0.000009 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.210 | 0.002132 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.223 | 0.002778 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.240.2 | 0.030303 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.241 | 0.000812 |
S | 176 | L176L | ctT | ctC | 1 | 1 | B.1.243 | 0.00007 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.258.19 | 0.007092 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.260 | 0.003344 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.279 | 0.000514 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.301 | 0.005917 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
S | 176 | L176H | cTt | cAt | 1 | 1 | B.1.351 | 0.00003 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | B.1.351 | 0.00003 |
S | 176 | L176L | ctT | ctC | 1 | 1 | B.1.36 | 0.000146 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.36.31 | 0.001751 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.36.37 | 0.002778 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.36.38 | 0.001642 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.362 | 0.001541 |
S | 176 | L176H | cTt | cAt | 1 | 1 | B.1.369 | 0.000285 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.391 | 0.001127 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.395 | 0.007042 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.408 | 0.00369 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.409 | 0.000781 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 176 | L176P | cTt | cCt | 1 | 1 | B.1.429 | 0.000024 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.44 | 0.008333 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.468 | 0.005714 |
S | 176 | L176L | ctT | ctC | 1 | 1 | B.1.468 | 0.005714 |
S | 176 | L176L | ctT | ctC | 1 | 1 | B.1.470 | 0.001404 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.497 | 0.000315 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.525 | 0.000113 |
S | 176 | L176P | cTt | cCt | 1 | 1 | B.1.526 | 0.000024 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.560 | 0.00463 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.561 | 0.000397 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.564 | 0.000426 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.567 | 0.003333 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.568 | 0.001111 |
S | 176 | L176P | cTt | cCt | 1 | 1 | B.1.568 | 0.001111 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.617.1 | 0.000129 |
S | 176 | L176V | Ctt | Gtt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 176 | L176S | CTt | TCt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.618 | 0.004032 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.621 | 0.000089 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 176 | L176del1 | Ctt | -tt | 1 | 1 | B.1.628 | 0.000352 |
S | 176 | L176L | ctT | ctG | 1 | 1 | B.1.630 | 0.005236 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.1.636 | 0.006711 |
S | 176 | L176P | cTt | cCt | 1 | 1 | B.1.637 | 0.000073 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 176 | L176del1 | Ctt | -tt | 1 | 1 | B.1.84 | 0.020833 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.93 | 0.000934 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.3 | 0.000831 |
S | 176 | L176del | CTT | --- | 1 | 1 | B.34 | 0.013699 |
S | 176 | L176I | Ctt | Att | 1 | 1 | B.6 | 0.00091 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.6 | 0.00091 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | B.6.6 | 0.000889 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | C.11 | 0.010638 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | L.3 | 0.003546 |
S | 176 | L176L | CtT | TtG | 1 | 1 | P.1 | 0.000016 |
S | 176 | L176H | cTt | cAt | 1 | 1 | P.1 | 0.000016 |
S | 176 | L176del | CTT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 176 | L176del | CTT | --- | 1 | 1 | P.1.10 | 0.000269 |
S | 176 | L176R | cTt | cGt | 1 | 1 | P.1.14 | 0.000048 |
S | 176 | L176L | ctT | ctC | 1 | 1 | P.1.2 | 0.001156 |
S | 176 | L176L | ctT | ctC | 1 | 1 | P.2 | 0.000187 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | P.7 | 0.004367 |
S | 176 | L176P | cTt | cCt | 1 | 1 | Q.3 | 0.000145 |
S | 176 | L176I | Ctt | Att | 1 | 1 | R.1 | 0.00009 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | W.1 | 0.008696 |
S | 176 | L176F | Ctt | Ttt | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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