CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 173

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S173Q173HnonsyncaGcaT664865650.98751522079-22081
S173Q173HnonsyncaGcaC6648830.01248522079-22081
S173Q173KnonsynCagAag30733073122079-22081
S173Q173QsyncaGcaA550550122079-22081
S173Q173RnonsyncAgcGg301301122079-22081
S173Q173deldelCAG---215215122079-22081
S173Q173LnonsyncAgcTg85770.90588222079-22081
S173Q173LnonsyncAGcTC8530.035294122079-22081
S173Q173LnonsynCAgTTg8520.023529422079-22081
S173Q173LnonsyncAGcTA8510.011764722079-22081
S173Q173LnonsyncAGcTT8510.011764722079-22081
S173Q173LnonsynCAGTTA8510.011764722079-22081
S173Q173EnonsynCagGag60590.98333322079-22081
S173Q173EnonsynCaGGaA6010.016666722079-22081
S173Q173PnonsyncAgcCg34310.91176522079-22081
S173Q173PnonsyncAGcCT3420.058823522079-22081
S173Q173PnonsyncAGcCA3410.029411822079-22081
S173Q173XnonsynCagTag26250.96153822079-22081
S173Q173XnonsynCaGTaA2610.038461522079-22081
S173Q173YnonsynCaGTaT320.66666722079-22081
S173Q173del1delCAg-Tg310.33333322079-22081
S173Q173YnonsynCaGTaC310.33333322079-22081
S173Q173del1delcaGca-310.33333322079-22081
S173Q173del1delCaGNa-310.33333322079-22081
S173Q173WnonsynCAgTGg22122079-22081
S173Q173GnonsynCAgGGg22122079-22081
S173Q173SnonsynCAgTCg210.522079-22081
S173Q173SnonsynCAGAGC210.522079-22081
S173Q173AnonsynCAgGCg11122079-22081
S173Q173VnonsynCAGGTT11122079-22081

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S173Q173HcaGcaT65656648All0.001256
S173Q173HcaGcaC836648All0.000016
S173Q173HcaGcaT37853785AY.29.10.83462
S173Q173KCagAag30733073All0.000588
S173Q173KCagAag26952695B.1.20.02373
S173Q173HcaGcaT587597AY.40.000914
S173Q173HcaGcaC10597AY.40.000016
S173Q173HcaGcaT587587AY.5.30.198043
S173Q173QcaGcaA550550All0.000105
S173Q173HcaGcaT382387AY.430.001692
S173Q173HcaGcaC5387AY.430.000022
S173Q173HcaGcaT344344AY.1030.002136
S173Q173HcaGcaT327327AY.440.00199
S173Q173RcAgcGg301301All0.000058
S173Q173KCagAag249249P.40.946768
S173Q173QcaGcaA226226B.1.1.70.000202
S173Q173delCAG---215215All0.000041
S173Q173RcAgcGg9696B.1.617.20.000361
S173Q173LcAgcTg7785All0.000015
S173Q173LcAGcTC385All0.000001
S173Q173LCAgTTg285All0
S173Q173LCAGTTA185All0
S173Q173LcAGcTT185All0
S173Q173LcAGcTA185All0
S173Q173QcaGcaA7272B.1.617.20.000271
S173Q173QcaGcaA7171AY.430.000315
S173Q173HcaGcaT6868AY.370.021492
S173Q173ECagGag5960All0.000011
S173Q173ECaGGaA160All0
S173Q173HcaGcaT3656B.1.617.20.000136
S173Q173HcaGcaC2056B.1.617.20.000075
S173Q173HcaGcaT5555AY.1200.002045
S173Q173HcaGcaT4751AY.250.000283
S173Q173HcaGcaC451AY.250.000024
S173Q173RcAgcGg4242AY.430.000186
S173Q173HcaGcaT3339B.1.1.70.00003
S173Q173HcaGcaC639B.1.1.70.000005
S173Q173KCagAag3737B.1.5960.003224
S173Q173PcAgcCg3134All0.000006
S173Q173PcAGcCT234All0
S173Q173PcAGcCA134All0
S173Q173QcaGcaA3434B.1.3800.225166
S173Q173RcAgcGg3333AY.40.000051
S173Q173HcaGcaT3333AY.530.009488
S173Q173LcAgcTg3131B.1.1.70.000028
S173Q173delCAG---3030B.1.1.70.000027
S173Q173ECagGag2727B.1.617.20.000102
S173Q173XCagTag2526All0.000005
S173Q173XCaGTaA126All0
S173Q173HcaGcaT2425AY.390.000593
S173Q173HcaGcaC125AY.390.000025
S173Q173QcaGcaA2525AY.420.001006
S173Q173HcaGcaT1719AY.260.000481
S173Q173HcaGcaC219AY.260.000057
S173Q173HcaGcaT1919AY.90.001284
S173Q173KCagAag1919B.10.000174
S173Q173HcaGcaT1818AY.470.00056
S173Q173RcAgcGg1717AY.1190.0006
S173Q173delCAG---1717AY.430.000075
S173Q173QcaGcaA1717B.1.177.210.0013
S173Q173ECagGag1616AY.4.20.000347
S173Q173PcAgcCg1616B.10.000147
S173Q173delCAG---1616P.1.150.003717
S173Q173HcaGcaT1415AY.9.20.000514
S173Q173HcaGcaC115AY.9.20.000037
S173Q173delCAG---1414AY.1140.003235
S173Q173RcAgcGg1212B.1.1.70.000011
S173Q173HcaGcaT1212B.1.2340.001583
S173Q173delCAG---1212P.10.000189
S173Q173delCAG---1111AY.40.000017
S173Q173HcaGcaT1111AY.46.60.000794
S173Q173HcaGcaT910AY.30.00009
S173Q173HcaGcaC110AY.30.00001
S173Q173HcaGcaT1010B.1.3960.007057
S173Q173HcaGcaT99AY.200.00035
S173Q173HcaGcaC69AY.610.000629
S173Q173HcaGcaT39AY.610.000314
S173Q173delCAG---99B.10.000082
S173Q173KCagAag99B.1.10.000163
S173Q173RcAgcGg99B.1.20.000079
S173Q173RcAgcGg88AY.1030.00005
S173Q173HcaGcaT88AY.210.01518
S173Q173QcaGcaA88AY.290.000126
S173Q173HcaGcaT88AY.4.50.00086
S173Q173RcAgcGg88B.1.1770.000105
S173Q173HcaGcaT88B.1.2430.000557
S173Q173delCAG---88C.370.000929
S173Q173QcaGcaA77AY.1020.000186
S173Q173RcAgcGg77AY.270.000453
S173Q173HcaGcaT77AY.50.000145
S173Q173KCagAag77B.1.1.70.000006
S173Q173QcaGcaA77B.1.20.000062
S173Q173delCAG---77B.1.617.20.000026
S173Q173RcAgcGg77P.10.00011
S173Q173HcaGcaT66AY.1020.000159
S173Q173LcAgcTg66AY.1200.000223
S173Q173HcaGcaT66AY.120.20.007712
S173Q173delCAG---66AY.250.000036
S173Q173QcaGcaA66AY.30.00006
S173Q173QcaGcaA66AY.390.000148
S173Q173KCagAag66AY.40.000009
S173Q173HcaGcaC46B.10.000037
S173Q173HcaGcaT26B.10.000018
S173Q173KCagAag66B.1.1.3010.007075
S173Q173delCAG---66B.1.1770.000079
S173Q173HcaGcaT45AY.1190.000141
S173Q173HcaGcaC15AY.1190.000035
S173Q173delCAG---55AY.4.50.000537
S173Q173delCAG---55AY.440.00003
S173Q173RcAgcGg55AY.440.00003
S173Q173HcaGcaT55AY.680.001369
S173Q173QcaGcaA55B0.000639
S173Q173LcAgcTg55B.1.4270.000252
S173Q173PcAgcCg55B.1.617.20.000019
S173Q173LCAGTTA140.055556
S173Q173LcAgcTg140.055556
S173Q173LcAGcTA140.055556
S173Q173LCAgTTg140.055556
S173Q173ECagGag44AY.1030.000025
S173Q173QcaGcaA44AY.1030.000025
S173Q173HcaGcaT44AY.230.000279
S173Q173RcAgcGg44AY.260.000113
S173Q173RcAgcGg44AY.300.001583
S173Q173RcAgcGg44AY.330.000267
S173Q173ECagGag44AY.40.000006
S173Q173QcaGcaA44AY.40.000006
S173Q173HcaGcaT34AY.4.20.000065
S173Q173HcaGcaC14AY.4.20.000022
S173Q173HcaGcaT44AY.420.000161
S173Q173KCagAag44AY.430.000018
S173Q173HcaGcaT44AY.99.20.000369
S173Q173LcAgcTg44B.10.000037
S173Q173delCAG---44B.1.10.000073
S173Q173QcaGcaA44B.1.1.5190.000159
S173Q173RcAgcGg44B.1.1.5190.000159
S173Q173LcAGcTC34B.1.5250.000339
S173Q173LcAGcTT14B.1.5250.000113
S173Q173ECagGag330.166667
S173Q173XCagTag230.111111
S173Q173XCaGTaA130.055556
S173Q173QcaGcaA33A.2.50.001497
S173Q173YCaGTaT23All0
S173Q173del1CAg-Tg13All0
S173Q173YCaGTaC13All0
S173Q173del1caGca-13All0
S173Q173del1CaGNa-13All0
S173Q173HcaGcaT33AY.1180.000188
S173Q173HcaGcaT33AY.120.10.000963
S173Q173PcAgcCg33AY.200.000117
S173Q173RcAgcGg33AY.230.000209
S173Q173delCAG---33AY.290.000047
S173Q173LcAgcTg33AY.30.00003
S173Q173HcaGcaT33AY.330.0002
S173Q173XCagTag33AY.40.000005
S173Q173LcAgcTg33AY.40.000005
S173Q173LcAgcTg23AY.430.000009
S173Q173LCAgTTg13AY.430.000004
S173Q173QcaGcaA33AY.440.000018
S173Q173KCagAag33AY.470.000093
S173Q173HcaGcaT23AY.60.000082
S173Q173HcaGcaC13AY.60.000041
S173Q173HcaGcaC23AY.710.00095
S173Q173HcaGcaT13AY.710.000475
S173Q173QcaGcaA33AY.99.20.000276
S173Q173XCagTag33B.10.000027
S173Q173RcAgcGg33B.1.10.000054
S173Q173delCAG---33B.1.20.000026
S173Q173KCagAag33B.1.2340.000396
S173Q173KCagAag33B.1.3980.008929
S173Q173QcaGcaA33B.1.4270.000151
S173Q173KCagAag33B.1.5950.000783
S173Q173HcaGcaT33B.1.6370.000219
S173Q173QcaGcaA33Q.80.000495
S173Q173GCAgGGg220.111111
S173Q173RcAgcGg220.111111
S173Q173HcaGcaT22A.280.005291
S173Q173GCAgGGg22All0
S173Q173WCAgTGg22All0
S173Q173SCAGAGC12All0
S173Q173SCAgTCg12All0
S173Q173LcAgcTg22AY.1030.000012
S173Q173HcaGcaC22AY.1050.001286
S173Q173HcaGcaC22AY.1060.00067
S173Q173RcAgcGg22AY.1060.00067
S173Q173HcaGcaT22AY.1110.000366
S173Q173KCagAag22AY.1160.000574
S173Q173HcaGcaT22AY.1170.000169
S173Q173QcaGcaA22AY.1180.000125
S173Q173RcAgcGg22AY.1200.000074
S173Q173ECagGag22AY.200.000078
S173Q173delCAG---22AY.230.000139
S173Q173QcaGcaA22AY.230.000139
S173Q173RcAgcGg22AY.30.00002
S173Q173PcAGcCT12AY.30.00001
S173Q173PcAgcCg12AY.30.00001
S173Q173WCAgTGg22AY.4.20.000043
S173Q173HcaGcaT22AY.4.2.10.000298
S173Q173LcAgcTg22AY.420.00008
S173Q173XCagTag22AY.430.000009
S173Q173HcaGcaT22AY.460.000208
S173Q173HcaGcaC22AY.550.001835
S173Q173delCAG---22AY.850.000854
S173Q173HcaGcaT22AY.870.001665
S173Q173HcaGcaT22AY.9.10.000167
S173Q173XCagTag22AY.9.20.000073
S173Q173HcaGcaT22AY.930.000546
S173Q173LcAgcTg22AY.99.20.000184
S173Q173RcAgcGg22B.10.000018
S173Q173QcaGcaA22B.1.10.000036
S173Q173KCagAag22B.1.1.1920.004619
S173Q173HcaGcaT22B.1.1.2140.000111
S173Q173delCAG---22B.1.1.3150.016949
S173Q173HcaGcaT22B.1.1.4660.017391
S173Q173HcaGcaT22B.1.1.5260.007092
S173Q173QcaGcaA22B.1.1600.000062
S173Q173delCAG---22B.1.1600.000062
S173Q173QcaGcaA22B.1.2100.004264
S173Q173KCagAag22B.1.2410.001623
S173Q173QcaGcaA22B.1.2580.000133
S173Q173QcaGcaA22B.1.3510.000059
S173Q173delCAG---22B.1.4270.000101
S173Q173RcAgcGg22B.1.4290.000047
S173Q173KCagAag22B.1.4290.000047
S173Q173KCagAag22B.1.5260.000047
S173Q173QcaGcaA22B.1.5960.000174
S173Q173delCAG---22B.1.617.10.000258
S173Q173LcAgcTg22B.1.617.20.000008
S173Q173delCAG---22B.1.6210.000177
S173Q173RcAgcGg22C.37.10.005236
S173Q173delCAG---22P.1.70.000639
S173Q173SCAgTCg110.055556
S173Q173ACAgGCg110.055556
S173Q173QcaGcaA110.055556
S173Q173PcAgcCg110.055556
S173Q173HcaGcaC11A.10.000282
S173Q173ECagGag11A.10.000282
S173Q173QcaGcaA11A.2.40.003367
S173Q173RcAgcGg11A.2.40.003367
S173Q173delCAG---11A.2.50.000499
S173Q173VCAGGTT11All0
S173Q173ACAgGCg11All0
S173Q173PcAgcCg11AY.1000.000046
S173Q173delCAG---11AY.1000.000046
S173Q173KCagAag11AY.1020.000027
S173Q173RcAgcGg11AY.1020.000027
S173Q173delCAG---11AY.1020.000027
S173Q173del1caGca-11AY.1030.000006
S173Q173KCagAag11AY.1130.000142
S173Q173HcaGcaT11AY.1160.000287
S173Q173QcaGcaA11AY.1170.000085
S173Q173delCAG---11AY.1170.000085
S173Q173delCAG---11AY.1180.000063
S173Q173delCAG---11AY.1200.000037
S173Q173delCAG---11AY.1210.000135
S173Q173QcaGcaA11AY.160.00038
S173Q173QcaGcaA11AY.200.000039
S173Q173KCagAag11AY.230.00007
S173Q173delCAG---11AY.240.000431
S173Q173QcaGcaA11AY.250.000006
S173Q173RcAgcGg11AY.250.000006
S173Q173LcAgcTg11AY.250.000006
S173Q173LcAgcTg11AY.260.000028
S173Q173PcAgcCg11AY.270.000065
S173Q173LcAgcTg11AY.290.000016
S173Q173HcaGcaT11AY.290.000016
S173Q173delCAG---11AY.30.00001
S173Q173QcaGcaA11AY.320.000532
S173Q173delCAG---11AY.330.000067
S173Q173KCagAag11AY.330.000067
S173Q173QcaGcaA11AY.340.000097
S173Q173HcaGcaT11AY.360.000148
S173Q173RcAgcGg11AY.370.000316
S173Q173RcAgcGg11AY.390.000025
S173Q173delCAG---11AY.390.000025
S173Q173HcaGcaT11AY.39.10.00004
S173Q173KCagAag11AY.4.20.000022
S173Q173RcAgcGg11AY.4.20.000022
S173Q173LcAgcTg11AY.4.20.000022
S173Q173LcAgcTg11AY.4.40.000409
S173Q173XCagTag11AY.4.50.000107
S173Q173KCagAag11AY.420.00004
S173Q173RcAgcGg11AY.420.00004
S173Q173delCAG---11AY.420.00004
S173Q173PcAGcCA11AY.430.000004
S173Q173KCagAag11AY.440.000006
S173Q173YCaGTaT11AY.440.000006
S173Q173RcAgcGg11AY.450.000122
S173Q173XCagTag11AY.460.000104
S173Q173RcAgcGg11AY.460.000104
S173Q173HcaGcaT11AY.46.10.001027
S173Q173delCAG---11AY.46.20.000635
S173Q173HcaGcaC11AY.46.20.000635
S173Q173HcaGcaT11AY.46.30.000934
S173Q173HcaGcaT11AY.46.40.000165
S173Q173delCAG---11AY.46.60.000072
S173Q173delCAG---11AY.470.000031
S173Q173RcAgcGg11AY.470.000031
S173Q173HcaGcaT11AY.480.000465
S173Q173XCagTag11AY.50.000021
S173Q173delCAG---11AY.50.000021
S173Q173YCaGTaT11AY.5.30.000337
S173Q173KCagAag11AY.520.000814
S173Q173QcaGcaA11AY.540.000095
S173Q173HcaGcaT11AY.540.000095
S173Q173SCAGAGC11AY.590.00053
S173Q173LcAgcTg11AY.60.000041
S173Q173delCAG---11AY.600.000938
S173Q173HcaGcaT11AY.600.000938
S173Q173QcaGcaA11AY.610.000105
S173Q173HcaGcaT11AY.630.000387
S173Q173RcAgcGg11AY.640.000595
S173Q173HcaGcaT11AY.690.000187
S173Q173delCAG---11AY.7.20.000559
S173Q173HcaGcaT11AY.750.000056
S173Q173delCAG---11AY.750.000056
S173Q173RcAgcGg11AY.75.10.00018
S173Q173HcaGcaC11AY.75.10.00018
S173Q173HcaGcaT11AY.760.004831
S173Q173ECaGGaA11AY.790.001211
S173Q173XCagTag11AY.90.000068
S173Q173del1CaGNa-11AY.9.20.000037
S173Q173QcaGcaA11AY.9.20.000037
S173Q173XCagTag11AY.9.2.10.001976
S173Q173RcAgcGg11AY.910.00073
S173Q173RcAgcGg11AY.930.000273
S173Q173XCagTag11AY.930.000273
S173Q173HcaGcaT11AY.960.002075
S173Q173HcaGcaT11AY.980.000079
S173Q173LcAgcTg11AY.980.000079
S173Q173QcaGcaA11AY.980.000079
S173Q173QcaGcaA11AY.98.10.000048
S173Q173delCAG---11AY.98.10.000048
S173Q173QcaGcaA11AY.990.001049
S173Q173ECagGag11AY.99.10.001553
S173Q173delCAG---11AZ.20.000821
S173Q173HcaGcaT11B0.000128
S173Q173delCAG---11B0.000128
S173Q173QcaGcaA11B.10.000009
S173Q173PcAgcCg11B.1.10.000018
S173Q173HcaGcaT11B.1.1.100.001115
S173Q173HcaGcaC11B.1.1.1770.019231
S173Q173LcAgcTg11B.1.1.1890.001513
S173Q173QcaGcaA11B.1.1.2140.000055
S173Q173QcaGcaA11B.1.1.280.000311
S173Q173KCagAag11B.1.1.280.000311
S173Q173HcaGcaT11B.1.1.2940.001266
S173Q173RcAgcGg11B.1.1.3010.001179
S173Q173HcaGcaT11B.1.1.3060.000438
S173Q173delCAG---11B.1.1.3110.000358
S173Q173RcAgcGg11B.1.1.3680.003086
S173Q173HcaGcaC11B.1.1.390.00051
S173Q173KCagAag11B.1.1.3970.002252
S173Q173ECagGag11B.1.1.4200.001006
S173Q173del1CAg-Tg11B.1.1.70.000001
S173Q173PcAgcCg11B.1.1.70.000001
S173Q173XCagTag11B.1.1.70.000001
S173Q173VCAGGTT11B.1.1.70.000001
S173Q173HcaGcaC11B.1.1.710.006061
S173Q173delCAG---11B.1.1150.021739
S173Q173delCAG---11B.1.1400.018868
S173Q173KCagAag11B.1.1570.002985
S173Q173XCagTag11B.1.1600.000031
S173Q173delCAG---11B.1.160.230.004831
S173Q173XCagTag11B.1.1770.000013
S173Q173KCagAag11B.1.1770.000013
S173Q173HcaGcaC11B.1.1770.000013
S173Q173delCAG---11B.1.177.160.000664
S173Q173RcAgcGg11B.1.177.210.000076
S173Q173XCagTag11B.1.177.230.003236
S173Q173HcaGcaT11B.1.177.40.000211
S173Q173delCAG---11B.1.177.540.000606
S173Q173delCAG---11B.1.177.60.000977
S173Q173RcAgcGg11B.1.177.600.000218
S173Q173delCAG---11B.1.177.620.001192
S173Q173delCAG---11B.1.177.630.002703
S173Q173QcaGcaA11B.1.177.650.000665
S173Q173KCagAag11B.1.177.730.000566
S173Q173HcaGcaC11B.1.20.000009
S173Q173XCagTag11B.1.20.000009
S173Q173HcaGcaC11B.1.214.20.0006
S173Q173delCAG---11B.1.2180.005155
S173Q173HcaGcaC11B.1.2230.002778
S173Q173delCAG---11B.1.2580.000067
S173Q173LcAgcTg11B.1.258.190.007092
S173Q173delCAG---11B.1.2600.003344
S173Q173KCagAag11B.1.3010.005917
S173Q173delCAG---11B.1.36.180.00042
S173Q173HcaGcaT11B.1.36.80.001
S173Q173XCagTag11B.1.3960.000706
S173Q173RcAgcGg11B.1.4270.00005
S173Q173HcaGcaT11B.1.4280.00102
S173Q173XCagTag11B.1.4290.000024
S173Q173HcaGcaT11B.1.4290.000024
S173Q173LcAgcTg11B.1.4290.000024
S173Q173RcAgcGg11B.1.4950.009091
S173Q173delCAG---11B.1.5250.000113
S173Q173PcAGcCT11B.1.5250.000113
S173Q173delCAG---11B.1.5610.000397
S173Q173KCagAag11B.1.5800.004065
S173Q173HcaGcaT11B.1.5960.000087
S173Q173delCAG---11B.1.5960.000087
S173Q173LcAgcTg11B.1.6000.005848
S173Q173HcaGcaT11B.1.617.10.000129
S173Q173KCagAag11B.1.617.20.000004
S173Q173YCaGTaC11B.1.617.20.000004
S173Q173delCAG---11B.1.6200.000946
S173Q173KCagAag11B.1.6210.000089
S173Q173QcaGcaA11B.1.6210.000089
S173Q173delCAG---11B.1.621.10.000506
S173Q173KCagAag11B.1.621.10.000506
S173Q173KCagAag11B.1.6230.000536
S173Q173LcAgcTg11B.1.6270.00202
S173Q173HcaGcaT11B.1.6280.000352
S173Q173LcAgcTg11B.1.6360.006711
S173Q173delCAG---11B.1.6380.052632
S173Q173delCAG---11B.340.013699
S173Q173HcaGcaC11B.400.000364
S173Q173QcaGcaA11C.370.000116
S173Q173LcAgcTg11D.20.000075
S173Q173HcaGcaT11P.10.000016
S173Q173QcaGcaA11P.10.000016
S173Q173PcAgcCg11P.1.10.000318
S173Q173delCAG---11P.1.10.000318
S173Q173QcaGcaA11P.1.120.000484
S173Q173HcaGcaT11P.1.150.000232
S173Q173HcaGcaC11P.1.170.000162
S173Q173RcAgcGg11Q.30.000145
S173Q173QcaGcaA11Q.40.000455