CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 172

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S172S172SsyntcTtcC9627370.76611222076-22078
S172S172SsyntcTtcG9622100.21829522076-22078
S172S172SsyntcTtcA962140.01455322076-22078
S172S172SsynTCTAGC96210.001039522076-22078
S172S172AnonsynTctGct5845810.99486322076-22078
S172S172AnonsynTcTGcG58430.0051369922076-22078
S172S172deldelTCT---196196122076-22078
S172S172FnonsyntCttTt1871850.98930522076-22078
S172S172FnonsyntCTtTC18720.010695222076-22078
S172S172YnonsyntCttAt126126122076-22078
S172S172TnonsynTctAct35340.97142922076-22078
S172S172TnonsynTcTAcG3510.028571422076-22078
S172S172PnonsynTctCct2626122076-22078
S172S172del1delTCT-NN730.42857122076-22078
S172S172del1deltcTtc-720.28571422076-22078
S172S172del1delTCTNT-710.14285722076-22078
S172S172del1delTct-ct710.14285722076-22078
S172S172CnonsyntCttGt55122076-22078
S172S172VnonsynTCtGTt420.522076-22078
S172S172VnonsynTCTGTG420.522076-22078
S172S172LnonsyntCTtTG22122076-22078
S172S172InonsynTCtATt11122076-22078
S172S172QnonsynTCTCAG11122076-22078

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S172S172StcTtcC737962All0.000141
S172S172StcTtcG210962All0.00004
S172S172StcTtcA14962All0.000003
S172S172STCTAGC1962All0
S172S172ATctGct581584All0.000111
S172S172ATcTGcG3584All0.000001
S172S172ATctGct546546B.1.1.70.000489
S172S172StcTtcC514520B.1.1.70.00046
S172S172StcTtcG5520B.1.1.70.000004
S172S172StcTtcA1520B.1.1.70.000001
S172S172delTCT---196196All0.000037
S172S172FtCttTt185187All0.000035
S172S172FtCTtTC2187All0
S172S172YtCttAt126126All0.000024
S172S172StcTtcG9393B.1.5910.989362
S172S172StcTtcC5454P.1.100.014551
S172S172FtCttTt4242AY.40.000065
S172S172FtCttTt3939B.1.1.70.000035
S172S172TTctAct3435All0.000007
S172S172TTcTAcG135All0
S172S172YtCttAt3333AY.30.000328
S172S172delTCT---3131B.1.1.70.000028
S172S172StcTtcG3031B.1.5250.003395
S172S172STCTAGC131B.1.5250.000113
S172S172StcTtcC2930AY.40.000045
S172S172StcTtcG130AY.40.000002
S172S172YtCttAt2727B.1.1.70.000024
S172S172PTctCct2626All0.000005
S172S172StcTtcC2626B.1.3610.033505
S172S172StcTtcG1720B.1.4290.0004
S172S172StcTtcC220B.1.4290.000047
S172S172StcTtcA120B.1.4290.000024
S172S172StcTtcG1718B.1.1.5190.000675
S172S172StcTtcA118B.1.1.5190.00004
S172S172delTCT---1717P.1.150.00395
S172S172delTCT---1616AY.430.000071
S172S172YtCttAt1515AY.440.000091
S172S172StcTtcC1013B.1.20.000088
S172S172StcTtcG313B.1.20.000026
S172S172TTctAct1212AY.1170.001014
S172S172StcTtcG612B.10.000055
S172S172StcTtcC612B.10.000055
S172S172delTCT---1212P.10.000189
S172S172delTCT---1010AY.40.000016
S172S172StcTtcC1010AY.440.000061
S172S172delTCT---1010B.10.000092
S172S172FtCttTt99AY.1030.000056
S172S172TTctAct99B.1.1.70.000008
S172S172delTCT---88B.1.617.20.00003
S172S172del1TCT-NN37All0.000001
S172S172del1tcTtc-27All0
S172S172del1Tct-ct17All0
S172S172del1TCTNT-17All0
S172S172StcTtcC77AY.250.000042
S172S172FtCttTt77AY.290.00011
S172S172YtCttAt77AY.430.000031
S172S172FtCttTt77AY.50.000145
S172S172StcTtcG47AY.50.000083
S172S172StcTtcC37AY.50.000062
S172S172delTCT---77C.370.000812
S172S172StcTtcC77P.1.120.003388
S172S172StcTtcC56AY.1030.000031
S172S172StcTtcG16AY.1030.000006
S172S172YtCttAt66AY.40.000009
S172S172YtCttAt66AY.750.000336
S172S172delTCT---66B.1.1770.000079
S172S172StcTtcG66B.1.177.40.001266
S172S172StcTtcC66B.1.617.20.000023
S172S172CtCttGt55All0.000001
S172S172delTCT---55AY.250.00003
S172S172StcTtcC45AY.30.00004
S172S172StcTtcG15AY.30.00001
S172S172delTCT---55AY.4.50.000537
S172S172delTCT---55AY.440.00003
S172S172ATctGct55B0.000639
S172S172FtCttTt55B.1.1.5190.000199
S172S172TTctAct55B.1.4290.000118
S172S172ATctGct55B.1.6370.000365
S172S172FtCttTt440.222222
S172S172ATcTGcG240.111111
S172S172VTCTGTG240.111111
S172S172ATctGct240.111111
S172S172VTCtGTt240.111111
S172S172VTCTGTG24All0
S172S172VTCtGTt24All0
S172S172FtCttTt44AY.1020.000106
S172S172FtCttTt44AY.30.00004
S172S172FtCttTt44AY.4.20.000087
S172S172StcTtcC44AY.430.000018
S172S172FtCttTt34AY.430.000013
S172S172FtCTtTC14AY.430.000004
S172S172YtCttAt44B.10.000037
S172S172delTCT---44B.1.10.000073
S172S172StcTtcG44B.1.1600.000125
S172S172ATctGct44B.1.20.000035
S172S172PTctCct44B.1.20.000035
S172S172ATctGct44B.1.4800.00995
S172S172FtCttTt44B.1.5760.003626
S172S172FtCttTt44B.1.617.20.000015
S172S172StcTtcC23AY.290.000032
S172S172StcTtcG13AY.290.000016
S172S172FtCttTt33AY.390.000074
S172S172YtCttAt33AY.420.000121
S172S172FtCttTt33AY.440.000018
S172S172PTctCct33B.10.000027
S172S172StcTtcC33B.1.1.2140.000166
S172S172delTCT---33B.1.20.000026
S172S172StcTtcG33B.1.2650.003812
S172S172FtCttTt33B.1.4290.000071
S172S172CtCttGt33B.1.5250.000339
S172S172LtCTtTG220.111111
S172S172StcTtcG220.111111
S172S172LtCTtTG22All0
S172S172FtCttTt22AY.1000.000092
S172S172PTctCct22AY.1020.000053
S172S172StcTtcG12AY.1020.000027
S172S172StcTtcC12AY.1020.000027
S172S172YtCttAt22AY.1100.000225
S172S172FtCttTt22AY.1200.000074
S172S172StcTtcA22AY.1200.000074
S172S172FtCttTt22AY.1210.000271
S172S172StcTtcC22AY.200.000078
S172S172delTCT---22AY.230.000139
S172S172YtCttAt22AY.230.000139
S172S172delTCT---22AY.290.000032
S172S172FtCttTt22AY.340.000194
S172S172StcTtcG12AY.390.000025
S172S172StcTtcA12AY.390.000025
S172S172FtCttTt22AY.39.10.000079
S172S172ATctGct22AY.40.000003
S172S172PTctCct22AY.40.000003
S172S172StcTtcC22AY.610.00021
S172S172StcTtcA22AY.690.000373
S172S172YtCttAt22AY.690.000373
S172S172StcTtcC22AY.860.00166
S172S172ATctGct22AY.90.000135
S172S172StcTtcC22B0.000256
S172S172ATctGct22B.10.000018
S172S172FtCttTt22B.10.000018
S172S172delTCT---22B.1.1.3150.016949
S172S172FtCttTt22B.1.1.4480.004065
S172S172PTctCct22B.1.1.70.000002
S172S172FtCttTt22B.1.177.430.002954
S172S172YtCttAt22B.1.20.000018
S172S172StcTtcC22B.1.2340.000264
S172S172StcTtcC22B.1.36.20.021505
S172S172delTCT---22B.1.617.10.000258
S172S172YtCttAt22B.1.617.20.000008
S172S172delTCT---22B.1.6210.000177
S172S172FtCttTt22B.1.6320.013423
S172S172FtCttTt22D.20.00015
S172S172StcTtcC22P.10.000032
S172S172delTCT---22P.1.70.000639
S172S172StcTtcC22Q.10.000253
S172S172ITCtATt110.055556
S172S172TTctAct110.055556
S172S172YtCttAt11A0.000387
S172S172StcTtcA11A0.000387
S172S172delTCT---11A.2.50.000499
S172S172PTctCct11A.30.002096
S172S172PTctCct11A.50.001923
S172S172ITCtATt11All0
S172S172QTCTCAG11All0
S172S172StcTtcG11AT.10.005128
S172S172PTctCct11AU.10.001266
S172S172StcTtcG11AY.1000.000046
S172S172delTCT---11AY.1000.000046
S172S172TTctAct11AY.1020.000027
S172S172YtCttAt11AY.1020.000027
S172S172delTCT---11AY.1020.000027
S172S172ATctGct11AY.1030.000006
S172S172StcTtcG11AY.1060.000335
S172S172TTctAct11AY.1090.00074
S172S172FtCttTt11AY.1160.000287
S172S172FtCttTt11AY.1170.000085
S172S172delTCT---11AY.1170.000085
S172S172StcTtcC11AY.1170.000085
S172S172FtCttTt11AY.1180.000063
S172S172delTCT---11AY.1180.000063
S172S172delTCT---11AY.1200.000037
S172S172delTCT---11AY.1210.000135
S172S172YtCttAt11AY.1210.000135
S172S172PTctCct11AY.1210.000135
S172S172StcTtcC11AY.160.00038
S172S172StcTtcC11AY.230.00007
S172S172PTctCct11AY.230.00007
S172S172PTctCct11AY.23.10.000417
S172S172StcTtcC11AY.23.10.000417
S172S172delTCT---11AY.240.000431
S172S172FtCttTt11AY.250.000006
S172S172ATctGct11AY.250.000006
S172S172delTCT---11AY.30.00001
S172S172StcTtcC11AY.300.000396
S172S172YtCttAt11AY.330.000067
S172S172PTctCct11AY.330.000067
S172S172StcTtcC11AY.330.000067
S172S172delTCT---11AY.330.000067
S172S172FtCttTt11AY.34.10.00051
S172S172PTctCct11AY.360.000148
S172S172delTCT---11AY.390.000025
S172S172StcTtcC11AY.39.10.00004
S172S172CtCttGt11AY.40.000002
S172S172CtCttGt11AY.4.20.000022
S172S172StcTtcG11AY.4.20.000022
S172S172TTcTAcG11AY.420.00004
S172S172delTCT---11AY.420.00004
S172S172PTctCct11AY.430.000004
S172S172ATctGct11AY.440.000006
S172S172TTctAct11AY.440.000006
S172S172StcTtcC11AY.450.000122
S172S172FtCttTt11AY.450.000122
S172S172YtCttAt11AY.460.000104
S172S172delTCT---11AY.46.20.000635
S172S172StcTtcC11AY.46.30.000934
S172S172del1TCTNT-11AY.46.60.000072
S172S172YtCttAt11AY.46.60.000072
S172S172delTCT---11AY.470.000031
S172S172del1tcTtc-11AY.50.000021
S172S172YtCttAt11AY.520.000814
S172S172StcTtcG11AY.580.000907
S172S172StcTtcC11AY.590.00053
S172S172FtCTtTC11AY.590.00053
S172S172delTCT---11AY.600.000938
S172S172delTCT---11AY.7.20.000559
S172S172ATctGct11AY.750.000056
S172S172delTCT---11AY.750.000056
S172S172StcTtcA11AY.750.000056
S172S172FtCttTt11AY.840.000437
S172S172delTCT---11AY.850.000427
S172S172StcTtcG11AY.850.000427
S172S172del1TCT-NN11AY.90.000068
S172S172TTctAct11AY.9.20.000037
S172S172StcTtcC11AY.9.20.000037
S172S172StcTtcC11AY.900.000684
S172S172delTCT---11AY.98.10.000048
S172S172FtCttTt11AY.98.10.000048
S172S172delTCT---11AZ.20.000821
S172S172YtCttAt11B0.000128
S172S172delTCT---11B0.000128
S172S172del1TCT-NN11B.10.000009
S172S172StcTtcC11B.1.10.000018
S172S172FtCttTt11B.1.10.000018
S172S172StcTtcC11B.1.1.2160.00089
S172S172StcTtcC11B.1.1.250.000569
S172S172StcTtcA11B.1.1.280.000311
S172S172delTCT---11B.1.1.3110.000358
S172S172ATctGct11B.1.1.330.000421
S172S172FtCttTt11B.1.1.370.000193
S172S172YtCttAt11B.1.1.3810.04
S172S172FtCttTt11B.1.1.610.008772
S172S172ATctGct11B.1.1.890.006061
S172S172delTCT---11B.1.1150.021739
S172S172delTCT---11B.1.1400.018868
S172S172TTctAct11B.1.1600.000031
S172S172YtCttAt11B.1.1600.000031
S172S172delTCT---11B.1.1600.000031
S172S172delTCT---11B.1.160.230.004831
S172S172ATctGct11B.1.1770.000013
S172S172StcTtcC11B.1.1770.000013
S172S172StcTtcC11B.1.177.100.000878
S172S172delTCT---11B.1.177.160.000664
S172S172StcTtcC11B.1.177.230.003236
S172S172delTCT---11B.1.177.40.000211
S172S172delTCT---11B.1.177.540.000606
S172S172StcTtcA11B.1.177.560.000668
S172S172delTCT---11B.1.177.60.000977
S172S172delTCT---11B.1.177.620.001192
S172S172del1tcTtc-11B.1.177.630.002703
S172S172StcTtcA11B.1.177.70.000165
S172S172FtCttTt11B.1.1940.04
S172S172FtCttTt11B.1.20.000009
S172S172TTctAct11B.1.214.20.0006
S172S172delTCT---11B.1.2180.005155
S172S172StcTtcC11B.1.220.001318
S172S172FtCttTt11B.1.2210.000071
S172S172FtCttTt11B.1.2230.002778
S172S172FtCttTt11B.1.230.006061
S172S172FtCttTt11B.1.2340.000132
S172S172delTCT---11B.1.2580.000067
S172S172StcTtcA11B.1.258.170.000104
S172S172delTCT---11B.1.2600.003344
S172S172YtCttAt11B.1.3010.005917
S172S172StcTtcC11B.1.3460.001311
S172S172TTctAct11B.1.3510.00003
S172S172ATcTGcG11B.1.3510.00003
S172S172StcTtcG11B.1.3510.00003
S172S172StcTtcG11B.1.360.000146
S172S172ATctGct11B.1.360.000146
S172S172delTCT---11B.1.36.180.00042
S172S172FtCttTt11B.1.36.80.001
S172S172StcTtcG11B.1.4270.00005
S172S172delTCT---11B.1.4270.00005
S172S172FtCttTt11B.1.4970.000315
S172S172delTCT---11B.1.5250.000113
S172S172QTCTCAG11B.1.5250.000113
S172S172PTctCct11B.1.5250.000113
S172S172ATctGct11B.1.5260.000024
S172S172StcTtcC11B.1.5260.000024
S172S172StcTtcG11B.1.5610.000397
S172S172delTCT---11B.1.5610.000397
S172S172StcTtcC11B.1.5760.000907
S172S172PTctCct11B.1.5820.000491
S172S172StcTtcG11B.1.5950.000261
S172S172YtCttAt11B.1.5960.000087
S172S172delTCT---11B.1.5960.000087
S172S172StcTtcC11B.1.6090.000479
S172S172StcTtcC11B.1.617.10.000129
S172S172PTctCct11B.1.617.20.000004
S172S172del1Tct-ct11B.1.617.20.000004
S172S172delTCT---11B.1.6200.000946
S172S172StcTtcC11B.1.6210.000089
S172S172delTCT---11B.1.621.10.000506
S172S172YtCttAt11B.1.621.10.000506
S172S172YtCttAt11B.1.6230.000536
S172S172StcTtcC11B.1.6370.000073
S172S172delTCT---11B.1.6380.052632
S172S172FtCttTt11B.1.930.000934
S172S172delTCT---11B.340.013699
S172S172StcTtcG11C.370.000116
S172S172delTCT---11C.37.10.002618
S172S172StcTtcG11C.380.008065
S172S172del1TCT-NN11P.10.000016
S172S172PTctCct11P.1.10.000318
S172S172delTCT---11P.1.10.000318
S172S172StcTtcC11P.1.10.000318
S172S172StcTtcG11P.30.001595
S172S172YtCttAt11Q.30.000145
S172S172StcTtcC11Q.40.000455