CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 172

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	172	S172S		syn	tcT	tcC	962	737	0.766112	22076-22078
S	172	S172S		syn	tcT	tcG	962	210	0.218295	22076-22078
S	172	S172S		syn	tcT	tcA	962	14	0.014553	22076-22078
S	172	S172S		syn	TCT	AGC	962	1	0.0010395	22076-22078
S	172	S172A		nonsyn	Tct	Gct	584	581	0.994863	22076-22078
S	172	S172A		nonsyn	TcT	GcG	584	3	0.00513699	22076-22078
S	172	S172del		del	TCT	---	196	196	1	22076-22078
S	172	S172F		nonsyn	tCt	tTt	187	185	0.989305	22076-22078
S	172	S172F		nonsyn	tCT	tTC	187	2	0.0106952	22076-22078
S	172	S172Y		nonsyn	tCt	tAt	126	126	1	22076-22078
S	172	S172T		nonsyn	Tct	Act	35	34	0.971429	22076-22078
S	172	S172T		nonsyn	TcT	AcG	35	1	0.0285714	22076-22078
S	172	S172P		nonsyn	Tct	Cct	26	26	1	22076-22078
S	172	S172del1		del	TCT	-NN	7	3	0.428571	22076-22078
S	172	S172del1		del	tcT	tc-	7	2	0.285714	22076-22078
S	172	S172del1		del	TCT	NT-	7	1	0.142857	22076-22078
S	172	S172del1		del	Tct	-ct	7	1	0.142857	22076-22078
S	172	S172C		nonsyn	tCt	tGt	5	5	1	22076-22078
S	172	S172V		nonsyn	TCt	GTt	4	2	0.5	22076-22078
S	172	S172V		nonsyn	TCT	GTG	4	2	0.5	22076-22078
S	172	S172L		nonsyn	tCT	tTG	2	2	1	22076-22078
S	172	S172I		nonsyn	TCt	ATt	1	1	1	22076-22078
S	172	S172Q		nonsyn	TCT	CAG	1	1	1	22076-22078

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	172	S172S	tcT	tcC	737	962	All	0.000141
S	172	S172S	tcT	tcG	210	962	All	0.00004
S	172	S172S	tcT	tcA	14	962	All	0.000003
S	172	S172S	TCT	AGC	1	962	All	0
S	172	S172A	Tct	Gct	581	584	All	0.000111
S	172	S172A	TcT	GcG	3	584	All	0.000001
S	172	S172A	Tct	Gct	546	546	B.1.1.7	0.000489
S	172	S172S	tcT	tcC	514	520	B.1.1.7	0.00046
S	172	S172S	tcT	tcG	5	520	B.1.1.7	0.000004
S	172	S172S	tcT	tcA	1	520	B.1.1.7	0.000001
S	172	S172del	TCT	---	196	196	All	0.000037
S	172	S172F	tCt	tTt	185	187	All	0.000035
S	172	S172F	tCT	tTC	2	187	All	0
S	172	S172Y	tCt	tAt	126	126	All	0.000024
S	172	S172S	tcT	tcG	93	93	B.1.591	0.989362
S	172	S172S	tcT	tcC	54	54	P.1.10	0.014551
S	172	S172F	tCt	tTt	42	42	AY.4	0.000065
S	172	S172F	tCt	tTt	39	39	B.1.1.7	0.000035
S	172	S172T	Tct	Act	34	35	All	0.000007
S	172	S172T	TcT	AcG	1	35	All	0
S	172	S172Y	tCt	tAt	33	33	AY.3	0.000328
S	172	S172del	TCT	---	31	31	B.1.1.7	0.000028
S	172	S172S	tcT	tcG	30	31	B.1.525	0.003395
S	172	S172S	TCT	AGC	1	31	B.1.525	0.000113
S	172	S172S	tcT	tcC	29	30	AY.4	0.000045
S	172	S172S	tcT	tcG	1	30	AY.4	0.000002
S	172	S172Y	tCt	tAt	27	27	B.1.1.7	0.000024
S	172	S172P	Tct	Cct	26	26	All	0.000005
S	172	S172S	tcT	tcC	26	26	B.1.361	0.033505
S	172	S172S	tcT	tcG	17	20	B.1.429	0.0004
S	172	S172S	tcT	tcC	2	20	B.1.429	0.000047
S	172	S172S	tcT	tcA	1	20	B.1.429	0.000024
S	172	S172S	tcT	tcG	17	18	B.1.1.519	0.000675
S	172	S172S	tcT	tcA	1	18	B.1.1.519	0.00004
S	172	S172del	TCT	---	17	17	P.1.15	0.00395
S	172	S172del	TCT	---	16	16	AY.43	0.000071
S	172	S172Y	tCt	tAt	15	15	AY.44	0.000091
S	172	S172S	tcT	tcC	10	13	B.1.2	0.000088
S	172	S172S	tcT	tcG	3	13	B.1.2	0.000026
S	172	S172T	Tct	Act	12	12	AY.117	0.001014
S	172	S172S	tcT	tcG	6	12	B.1	0.000055
S	172	S172S	tcT	tcC	6	12	B.1	0.000055
S	172	S172del	TCT	---	12	12	P.1	0.000189
S	172	S172del	TCT	---	10	10	AY.4	0.000016
S	172	S172S	tcT	tcC	10	10	AY.44	0.000061
S	172	S172del	TCT	---	10	10	B.1	0.000092
S	172	S172F	tCt	tTt	9	9	AY.103	0.000056
S	172	S172T	Tct	Act	9	9	B.1.1.7	0.000008
S	172	S172del	TCT	---	8	8	B.1.617.2	0.00003
S	172	S172del1	TCT	-NN	3	7	All	0.000001
S	172	S172del1	tcT	tc-	2	7	All	0
S	172	S172del1	Tct	-ct	1	7	All	0
S	172	S172del1	TCT	NT-	1	7	All	0
S	172	S172S	tcT	tcC	7	7	AY.25	0.000042
S	172	S172F	tCt	tTt	7	7	AY.29	0.00011
S	172	S172Y	tCt	tAt	7	7	AY.43	0.000031
S	172	S172F	tCt	tTt	7	7	AY.5	0.000145
S	172	S172S	tcT	tcG	4	7	AY.5	0.000083
S	172	S172S	tcT	tcC	3	7	AY.5	0.000062
S	172	S172del	TCT	---	7	7	C.37	0.000812
S	172	S172S	tcT	tcC	7	7	P.1.12	0.003388
S	172	S172S	tcT	tcC	5	6	AY.103	0.000031
S	172	S172S	tcT	tcG	1	6	AY.103	0.000006
S	172	S172Y	tCt	tAt	6	6	AY.4	0.000009
S	172	S172Y	tCt	tAt	6	6	AY.75	0.000336
S	172	S172del	TCT	---	6	6	B.1.177	0.000079
S	172	S172S	tcT	tcG	6	6	B.1.177.4	0.001266
S	172	S172S	tcT	tcC	6	6	B.1.617.2	0.000023
S	172	S172C	tCt	tGt	5	5	All	0.000001
S	172	S172del	TCT	---	5	5	AY.25	0.00003
S	172	S172S	tcT	tcC	4	5	AY.3	0.00004
S	172	S172S	tcT	tcG	1	5	AY.3	0.00001
S	172	S172del	TCT	---	5	5	AY.4.5	0.000537
S	172	S172del	TCT	---	5	5	AY.44	0.00003
S	172	S172A	Tct	Gct	5	5	B	0.000639
S	172	S172F	tCt	tTt	5	5	B.1.1.519	0.000199
S	172	S172T	Tct	Act	5	5	B.1.429	0.000118
S	172	S172A	Tct	Gct	5	5	B.1.637	0.000365
S	172	S172F	tCt	tTt	4	4		0.222222
S	172	S172A	TcT	GcG	2	4		0.111111
S	172	S172V	TCT	GTG	2	4		0.111111
S	172	S172A	Tct	Gct	2	4		0.111111
S	172	S172V	TCt	GTt	2	4		0.111111
S	172	S172V	TCT	GTG	2	4	All	0
S	172	S172V	TCt	GTt	2	4	All	0
S	172	S172F	tCt	tTt	4	4	AY.102	0.000106
S	172	S172F	tCt	tTt	4	4	AY.3	0.00004
S	172	S172F	tCt	tTt	4	4	AY.4.2	0.000087
S	172	S172S	tcT	tcC	4	4	AY.43	0.000018
S	172	S172F	tCt	tTt	3	4	AY.43	0.000013
S	172	S172F	tCT	tTC	1	4	AY.43	0.000004
S	172	S172Y	tCt	tAt	4	4	B.1	0.000037
S	172	S172del	TCT	---	4	4	B.1.1	0.000073
S	172	S172S	tcT	tcG	4	4	B.1.160	0.000125
S	172	S172A	Tct	Gct	4	4	B.1.2	0.000035
S	172	S172P	Tct	Cct	4	4	B.1.2	0.000035
S	172	S172A	Tct	Gct	4	4	B.1.480	0.00995
S	172	S172F	tCt	tTt	4	4	B.1.576	0.003626
S	172	S172F	tCt	tTt	4	4	B.1.617.2	0.000015
S	172	S172S	tcT	tcC	2	3	AY.29	0.000032
S	172	S172S	tcT	tcG	1	3	AY.29	0.000016
S	172	S172F	tCt	tTt	3	3	AY.39	0.000074
S	172	S172Y	tCt	tAt	3	3	AY.42	0.000121
S	172	S172F	tCt	tTt	3	3	AY.44	0.000018
S	172	S172P	Tct	Cct	3	3	B.1	0.000027
S	172	S172S	tcT	tcC	3	3	B.1.1.214	0.000166
S	172	S172del	TCT	---	3	3	B.1.2	0.000026
S	172	S172S	tcT	tcG	3	3	B.1.265	0.003812
S	172	S172F	tCt	tTt	3	3	B.1.429	0.000071
S	172	S172C	tCt	tGt	3	3	B.1.525	0.000339
S	172	S172L	tCT	tTG	2	2		0.111111
S	172	S172S	tcT	tcG	2	2		0.111111
S	172	S172L	tCT	tTG	2	2	All	0
S	172	S172F	tCt	tTt	2	2	AY.100	0.000092
S	172	S172P	Tct	Cct	2	2	AY.102	0.000053
S	172	S172S	tcT	tcG	1	2	AY.102	0.000027
S	172	S172S	tcT	tcC	1	2	AY.102	0.000027
S	172	S172Y	tCt	tAt	2	2	AY.110	0.000225
S	172	S172F	tCt	tTt	2	2	AY.120	0.000074
S	172	S172S	tcT	tcA	2	2	AY.120	0.000074
S	172	S172F	tCt	tTt	2	2	AY.121	0.000271
S	172	S172S	tcT	tcC	2	2	AY.20	0.000078
S	172	S172del	TCT	---	2	2	AY.23	0.000139
S	172	S172Y	tCt	tAt	2	2	AY.23	0.000139
S	172	S172del	TCT	---	2	2	AY.29	0.000032
S	172	S172F	tCt	tTt	2	2	AY.34	0.000194
S	172	S172S	tcT	tcG	1	2	AY.39	0.000025
S	172	S172S	tcT	tcA	1	2	AY.39	0.000025
S	172	S172F	tCt	tTt	2	2	AY.39.1	0.000079
S	172	S172A	Tct	Gct	2	2	AY.4	0.000003
S	172	S172P	Tct	Cct	2	2	AY.4	0.000003
S	172	S172S	tcT	tcC	2	2	AY.61	0.00021
S	172	S172S	tcT	tcA	2	2	AY.69	0.000373
S	172	S172Y	tCt	tAt	2	2	AY.69	0.000373
S	172	S172S	tcT	tcC	2	2	AY.86	0.00166
S	172	S172A	Tct	Gct	2	2	AY.9	0.000135
S	172	S172S	tcT	tcC	2	2	B	0.000256
S	172	S172A	Tct	Gct	2	2	B.1	0.000018
S	172	S172F	tCt	tTt	2	2	B.1	0.000018
S	172	S172del	TCT	---	2	2	B.1.1.315	0.016949
S	172	S172F	tCt	tTt	2	2	B.1.1.448	0.004065
S	172	S172P	Tct	Cct	2	2	B.1.1.7	0.000002
S	172	S172F	tCt	tTt	2	2	B.1.177.43	0.002954
S	172	S172Y	tCt	tAt	2	2	B.1.2	0.000018
S	172	S172S	tcT	tcC	2	2	B.1.234	0.000264
S	172	S172S	tcT	tcC	2	2	B.1.36.2	0.021505
S	172	S172del	TCT	---	2	2	B.1.617.1	0.000258
S	172	S172Y	tCt	tAt	2	2	B.1.617.2	0.000008
S	172	S172del	TCT	---	2	2	B.1.621	0.000177
S	172	S172F	tCt	tTt	2	2	B.1.632	0.013423
S	172	S172F	tCt	tTt	2	2	D.2	0.00015
S	172	S172S	tcT	tcC	2	2	P.1	0.000032
S	172	S172del	TCT	---	2	2	P.1.7	0.000639
S	172	S172S	tcT	tcC	2	2	Q.1	0.000253
S	172	S172I	TCt	ATt	1	1		0.055556
S	172	S172T	Tct	Act	1	1		0.055556
S	172	S172Y	tCt	tAt	1	1	A	0.000387
S	172	S172S	tcT	tcA	1	1	A	0.000387
S	172	S172del	TCT	---	1	1	A.2.5	0.000499
S	172	S172P	Tct	Cct	1	1	A.3	0.002096
S	172	S172P	Tct	Cct	1	1	A.5	0.001923
S	172	S172I	TCt	ATt	1	1	All	0
S	172	S172Q	TCT	CAG	1	1	All	0
S	172	S172S	tcT	tcG	1	1	AT.1	0.005128
S	172	S172P	Tct	Cct	1	1	AU.1	0.001266
S	172	S172S	tcT	tcG	1	1	AY.100	0.000046
S	172	S172del	TCT	---	1	1	AY.100	0.000046
S	172	S172T	Tct	Act	1	1	AY.102	0.000027
S	172	S172Y	tCt	tAt	1	1	AY.102	0.000027
S	172	S172del	TCT	---	1	1	AY.102	0.000027
S	172	S172A	Tct	Gct	1	1	AY.103	0.000006
S	172	S172S	tcT	tcG	1	1	AY.106	0.000335
S	172	S172T	Tct	Act	1	1	AY.109	0.00074
S	172	S172F	tCt	tTt	1	1	AY.116	0.000287
S	172	S172F	tCt	tTt	1	1	AY.117	0.000085
S	172	S172del	TCT	---	1	1	AY.117	0.000085
S	172	S172S	tcT	tcC	1	1	AY.117	0.000085
S	172	S172F	tCt	tTt	1	1	AY.118	0.000063
S	172	S172del	TCT	---	1	1	AY.118	0.000063
S	172	S172del	TCT	---	1	1	AY.120	0.000037
S	172	S172del	TCT	---	1	1	AY.121	0.000135
S	172	S172Y	tCt	tAt	1	1	AY.121	0.000135
S	172	S172P	Tct	Cct	1	1	AY.121	0.000135
S	172	S172S	tcT	tcC	1	1	AY.16	0.00038
S	172	S172S	tcT	tcC	1	1	AY.23	0.00007
S	172	S172P	Tct	Cct	1	1	AY.23	0.00007
S	172	S172P	Tct	Cct	1	1	AY.23.1	0.000417
S	172	S172S	tcT	tcC	1	1	AY.23.1	0.000417
S	172	S172del	TCT	---	1	1	AY.24	0.000431
S	172	S172F	tCt	tTt	1	1	AY.25	0.000006
S	172	S172A	Tct	Gct	1	1	AY.25	0.000006
S	172	S172del	TCT	---	1	1	AY.3	0.00001
S	172	S172S	tcT	tcC	1	1	AY.30	0.000396
S	172	S172Y	tCt	tAt	1	1	AY.33	0.000067
S	172	S172P	Tct	Cct	1	1	AY.33	0.000067
S	172	S172S	tcT	tcC	1	1	AY.33	0.000067
S	172	S172del	TCT	---	1	1	AY.33	0.000067
S	172	S172F	tCt	tTt	1	1	AY.34.1	0.00051
S	172	S172P	Tct	Cct	1	1	AY.36	0.000148
S	172	S172del	TCT	---	1	1	AY.39	0.000025
S	172	S172S	tcT	tcC	1	1	AY.39.1	0.00004
S	172	S172C	tCt	tGt	1	1	AY.4	0.000002
S	172	S172C	tCt	tGt	1	1	AY.4.2	0.000022
S	172	S172S	tcT	tcG	1	1	AY.4.2	0.000022
S	172	S172T	TcT	AcG	1	1	AY.42	0.00004
S	172	S172del	TCT	---	1	1	AY.42	0.00004
S	172	S172P	Tct	Cct	1	1	AY.43	0.000004
S	172	S172A	Tct	Gct	1	1	AY.44	0.000006
S	172	S172T	Tct	Act	1	1	AY.44	0.000006
S	172	S172S	tcT	tcC	1	1	AY.45	0.000122
S	172	S172F	tCt	tTt	1	1	AY.45	0.000122
S	172	S172Y	tCt	tAt	1	1	AY.46	0.000104
S	172	S172del	TCT	---	1	1	AY.46.2	0.000635
S	172	S172S	tcT	tcC	1	1	AY.46.3	0.000934
S	172	S172del1	TCT	NT-	1	1	AY.46.6	0.000072
S	172	S172Y	tCt	tAt	1	1	AY.46.6	0.000072
S	172	S172del	TCT	---	1	1	AY.47	0.000031
S	172	S172del1	tcT	tc-	1	1	AY.5	0.000021
S	172	S172Y	tCt	tAt	1	1	AY.52	0.000814
S	172	S172S	tcT	tcG	1	1	AY.58	0.000907
S	172	S172S	tcT	tcC	1	1	AY.59	0.00053
S	172	S172F	tCT	tTC	1	1	AY.59	0.00053
S	172	S172del	TCT	---	1	1	AY.60	0.000938
S	172	S172del	TCT	---	1	1	AY.7.2	0.000559
S	172	S172A	Tct	Gct	1	1	AY.75	0.000056
S	172	S172del	TCT	---	1	1	AY.75	0.000056
S	172	S172S	tcT	tcA	1	1	AY.75	0.000056
S	172	S172F	tCt	tTt	1	1	AY.84	0.000437
S	172	S172del	TCT	---	1	1	AY.85	0.000427
S	172	S172S	tcT	tcG	1	1	AY.85	0.000427
S	172	S172del1	TCT	-NN	1	1	AY.9	0.000068
S	172	S172T	Tct	Act	1	1	AY.9.2	0.000037
S	172	S172S	tcT	tcC	1	1	AY.9.2	0.000037
S	172	S172S	tcT	tcC	1	1	AY.90	0.000684
S	172	S172del	TCT	---	1	1	AY.98.1	0.000048
S	172	S172F	tCt	tTt	1	1	AY.98.1	0.000048
S	172	S172del	TCT	---	1	1	AZ.2	0.000821
S	172	S172Y	tCt	tAt	1	1	B	0.000128
S	172	S172del	TCT	---	1	1	B	0.000128
S	172	S172del1	TCT	-NN	1	1	B.1	0.000009
S	172	S172S	tcT	tcC	1	1	B.1.1	0.000018
S	172	S172F	tCt	tTt	1	1	B.1.1	0.000018
S	172	S172S	tcT	tcC	1	1	B.1.1.216	0.00089
S	172	S172S	tcT	tcC	1	1	B.1.1.25	0.000569
S	172	S172S	tcT	tcA	1	1	B.1.1.28	0.000311
S	172	S172del	TCT	---	1	1	B.1.1.311	0.000358
S	172	S172A	Tct	Gct	1	1	B.1.1.33	0.000421
S	172	S172F	tCt	tTt	1	1	B.1.1.37	0.000193
S	172	S172Y	tCt	tAt	1	1	B.1.1.381	0.04
S	172	S172F	tCt	tTt	1	1	B.1.1.61	0.008772
S	172	S172A	Tct	Gct	1	1	B.1.1.89	0.006061
S	172	S172del	TCT	---	1	1	B.1.115	0.021739
S	172	S172del	TCT	---	1	1	B.1.140	0.018868
S	172	S172T	Tct	Act	1	1	B.1.160	0.000031
S	172	S172Y	tCt	tAt	1	1	B.1.160	0.000031
S	172	S172del	TCT	---	1	1	B.1.160	0.000031
S	172	S172del	TCT	---	1	1	B.1.160.23	0.004831
S	172	S172A	Tct	Gct	1	1	B.1.177	0.000013
S	172	S172S	tcT	tcC	1	1	B.1.177	0.000013
S	172	S172S	tcT	tcC	1	1	B.1.177.10	0.000878
S	172	S172del	TCT	---	1	1	B.1.177.16	0.000664
S	172	S172S	tcT	tcC	1	1	B.1.177.23	0.003236
S	172	S172del	TCT	---	1	1	B.1.177.4	0.000211
S	172	S172del	TCT	---	1	1	B.1.177.54	0.000606
S	172	S172S	tcT	tcA	1	1	B.1.177.56	0.000668
S	172	S172del	TCT	---	1	1	B.1.177.6	0.000977
S	172	S172del	TCT	---	1	1	B.1.177.62	0.001192
S	172	S172del1	tcT	tc-	1	1	B.1.177.63	0.002703
S	172	S172S	tcT	tcA	1	1	B.1.177.7	0.000165
S	172	S172F	tCt	tTt	1	1	B.1.194	0.04
S	172	S172F	tCt	tTt	1	1	B.1.2	0.000009
S	172	S172T	Tct	Act	1	1	B.1.214.2	0.0006
S	172	S172del	TCT	---	1	1	B.1.218	0.005155
S	172	S172S	tcT	tcC	1	1	B.1.22	0.001318
S	172	S172F	tCt	tTt	1	1	B.1.221	0.000071
S	172	S172F	tCt	tTt	1	1	B.1.223	0.002778
S	172	S172F	tCt	tTt	1	1	B.1.23	0.006061
S	172	S172F	tCt	tTt	1	1	B.1.234	0.000132
S	172	S172del	TCT	---	1	1	B.1.258	0.000067
S	172	S172S	tcT	tcA	1	1	B.1.258.17	0.000104
S	172	S172del	TCT	---	1	1	B.1.260	0.003344
S	172	S172Y	tCt	tAt	1	1	B.1.301	0.005917
S	172	S172S	tcT	tcC	1	1	B.1.346	0.001311
S	172	S172T	Tct	Act	1	1	B.1.351	0.00003
S	172	S172A	TcT	GcG	1	1	B.1.351	0.00003
S	172	S172S	tcT	tcG	1	1	B.1.351	0.00003
S	172	S172S	tcT	tcG	1	1	B.1.36	0.000146
S	172	S172A	Tct	Gct	1	1	B.1.36	0.000146
S	172	S172del	TCT	---	1	1	B.1.36.18	0.00042
S	172	S172F	tCt	tTt	1	1	B.1.36.8	0.001
S	172	S172S	tcT	tcG	1	1	B.1.427	0.00005
S	172	S172del	TCT	---	1	1	B.1.427	0.00005
S	172	S172F	tCt	tTt	1	1	B.1.497	0.000315
S	172	S172del	TCT	---	1	1	B.1.525	0.000113
S	172	S172Q	TCT	CAG	1	1	B.1.525	0.000113
S	172	S172P	Tct	Cct	1	1	B.1.525	0.000113
S	172	S172A	Tct	Gct	1	1	B.1.526	0.000024
S	172	S172S	tcT	tcC	1	1	B.1.526	0.000024
S	172	S172S	tcT	tcG	1	1	B.1.561	0.000397
S	172	S172del	TCT	---	1	1	B.1.561	0.000397
S	172	S172S	tcT	tcC	1	1	B.1.576	0.000907
S	172	S172P	Tct	Cct	1	1	B.1.582	0.000491
S	172	S172S	tcT	tcG	1	1	B.1.595	0.000261
S	172	S172Y	tCt	tAt	1	1	B.1.596	0.000087
S	172	S172del	TCT	---	1	1	B.1.596	0.000087
S	172	S172S	tcT	tcC	1	1	B.1.609	0.000479
S	172	S172S	tcT	tcC	1	1	B.1.617.1	0.000129
S	172	S172P	Tct	Cct	1	1	B.1.617.2	0.000004
S	172	S172del1	Tct	-ct	1	1	B.1.617.2	0.000004
S	172	S172del	TCT	---	1	1	B.1.620	0.000946
S	172	S172S	tcT	tcC	1	1	B.1.621	0.000089
S	172	S172del	TCT	---	1	1	B.1.621.1	0.000506
S	172	S172Y	tCt	tAt	1	1	B.1.621.1	0.000506
S	172	S172Y	tCt	tAt	1	1	B.1.623	0.000536
S	172	S172S	tcT	tcC	1	1	B.1.637	0.000073
S	172	S172del	TCT	---	1	1	B.1.638	0.052632
S	172	S172F	tCt	tTt	1	1	B.1.93	0.000934
S	172	S172del	TCT	---	1	1	B.34	0.013699
S	172	S172S	tcT	tcG	1	1	C.37	0.000116
S	172	S172del	TCT	---	1	1	C.37.1	0.002618
S	172	S172S	tcT	tcG	1	1	C.38	0.008065
S	172	S172del1	TCT	-NN	1	1	P.1	0.000016
S	172	S172P	Tct	Cct	1	1	P.1.1	0.000318
S	172	S172del	TCT	---	1	1	P.1.1	0.000318
S	172	S172S	tcT	tcC	1	1	P.1.1	0.000318
S	172	S172S	tcT	tcG	1	1	P.3	0.001595
S	172	S172Y	tCt	tAt	1	1	Q.3	0.000145
S	172	S172S	tcT	tcC	1	1	Q.4	0.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.