CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 164 | N164T | nonsyn | aAt | aCt | 1294 | 1293 | 0.999227 | 22052-22054 | |
S | 164 | N164T | nonsyn | aAT | aCG | 1294 | 1 | 0.000772798 | 22052-22054 | |
S | 164 | N164N | syn | aaT | aaC | 762 | 762 | 1 | 22052-22054 | |
S | 164 | N164K | nonsyn | aaT | aaG | 268 | 253 | 0.94403 | 22052-22054 | |
S | 164 | N164K | nonsyn | aaT | aaA | 268 | 15 | 0.0559702 | 22052-22054 | |
S | 164 | N164del | del | AAT | --- | 255 | 255 | 1 | 22052-22054 | |
S | 164 | N164S | nonsyn | aAt | aGt | 159 | 159 | 1 | 22052-22054 | |
S | 164 | N164H | nonsyn | Aat | Cat | 135 | 134 | 0.992593 | 22052-22054 | |
S | 164 | N164H | nonsyn | AaT | CaC | 135 | 1 | 0.00740741 | 22052-22054 | |
S | 164 | N164Y | nonsyn | Aat | Tat | 102 | 100 | 0.980392 | 22052-22054 | |
S | 164 | N164Y | nonsyn | AaT | TaC | 102 | 2 | 0.0196078 | 22052-22054 | |
S | 164 | N164I | nonsyn | aAt | aTt | 63 | 63 | 1 | 22052-22054 | |
S | 164 | N164D | nonsyn | Aat | Gat | 31 | 31 | 1 | 22052-22054 | |
S | 164 | N164X | nonsyn | AaT | TaA | 9 | 9 | 1 | 22052-22054 | |
S | 164 | N164del1 | del | aaT | aa- | 4 | 2 | 0.5 | 22052-22054 | |
S | 164 | N164del1 | del | Aat | -at | 4 | 2 | 0.5 | 22052-22054 | |
S | 164 | N164del2 | del | AAt | --t | 2 | 2 | 1 | 22052-22054 | |
S | 164 | N164P | nonsyn | AAT | CCG | 2 | 1 | 0.5 | 22052-22054 | |
S | 164 | N164P | nonsyn | AAt | CCt | 2 | 1 | 0.5 | 22052-22054 | |
S | 164 | N164F | nonsyn | AAt | TTt | 1 | 1 | 1 | 22052-22054 | |
S | 164 | N164E | nonsyn | AaT | GaA | 1 | 1 | 1 | 22052-22054 | |
S | 164 | N164G | nonsyn | AAT | GGA | 1 | 1 | 1 | 22052-22054 | |
S | 164 | N164Q | nonsyn | AaT | CaG | 1 | 1 | 1 | 22052-22054 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 164 | N164T | aAt | aCt | 1293 | 1294 | All | 0.000247 |
S | 164 | N164T | aAT | aCG | 1 | 1294 | All | 0 |
S | 164 | N164N | aaT | aaC | 762 | 762 | All | 0.000146 |
S | 164 | N164T | aAt | aCt | 730 | 730 | B.1.177.9 | 0.972037 |
S | 164 | N164T | aAt | aCt | 393 | 393 | B.1.177.30 | 0.987437 |
S | 164 | N164K | aaT | aaG | 253 | 268 | All | 0.000048 |
S | 164 | N164K | aaT | aaA | 15 | 268 | All | 0.000003 |
S | 164 | N164del | AAT | --- | 255 | 255 | All | 0.000049 |
S | 164 | N164K | aaT | aaG | 244 | 244 | P.4 | 0.927757 |
S | 164 | N164N | aaT | aaC | 206 | 206 | B.1.617.2 | 0.000776 |
S | 164 | N164S | aAt | aGt | 159 | 159 | All | 0.00003 |
S | 164 | N164H | Aat | Cat | 134 | 135 | All | 0.000026 |
S | 164 | N164H | AaT | CaC | 1 | 135 | All | 0 |
S | 164 | N164T | aAt | aCt | 109 | 109 | B.1.1.7 | 0.000098 |
S | 164 | N164Y | Aat | Tat | 100 | 102 | All | 0.000019 |
S | 164 | N164Y | AaT | TaC | 2 | 102 | All | 0 |
S | 164 | N164N | aaT | aaC | 92 | 92 | B.1 | 0.000843 |
S | 164 | N164I | aAt | aTt | 63 | 63 | All | 0.000012 |
S | 164 | N164H | Aat | Cat | 59 | 59 | AY.3 | 0.000587 |
S | 164 | N164N | aaT | aaC | 58 | 58 | AY.4 | 0.00009 |
S | 164 | N164Y | Aat | Tat | 50 | 50 | AY.103 | 0.00031 |
S | 164 | N164N | aaT | aaC | 47 | 47 | AY.102 | 0.001246 |
S | 164 | N164N | aaT | aaC | 46 | 46 | B.1.526 | 0.001081 |
S | 164 | N164N | aaT | aaC | 39 | 39 | B.1.1.7 | 0.000035 |
S | 164 | N164D | Aat | Gat | 31 | 31 | All | 0.000006 |
S | 164 | N164del | AAT | --- | 31 | 31 | B.1.1.7 | 0.000028 |
S | 164 | N164H | Aat | Cat | 29 | 30 | B.1.1.7 | 0.000026 |
S | 164 | N164H | AaT | CaC | 1 | 30 | B.1.1.7 | 0.000001 |
S | 164 | N164S | aAt | aGt | 26 | 26 | B.1.1.7 | 0.000023 |
S | 164 | N164N | aaT | aaC | 25 | 25 | AY.39 | 0.000618 |
S | 164 | N164Y | Aat | Tat | 25 | 25 | B.1.1.7 | 0.000022 |
S | 164 | N164del | AAT | --- | 22 | 22 | C.37 | 0.002553 |
S | 164 | N164del | AAT | --- | 21 | 21 | AY.43 | 0.000093 |
S | 164 | N164del | AAT | --- | 21 | 21 | P.1.15 | 0.004879 |
S | 164 | N164S | aAt | aGt | 16 | 16 | AY.100 | 0.000736 |
S | 164 | N164N | aaT | aaC | 16 | 16 | AY.103 | 0.000099 |
S | 164 | N164N | aaT | aaC | 16 | 16 | B.1.1.207 | 0.018913 |
S | 164 | N164del | AAT | --- | 16 | 16 | P.1 | 0.000252 |
S | 164 | N164N | aaT | aaC | 15 | 15 | AY.43 | 0.000066 |
S | 164 | N164N | aaT | aaC | 15 | 15 | B.1.2 | 0.000132 |
S | 164 | N164S | aAt | aGt | 13 | 13 | AY.120 | 0.000483 |
S | 164 | N164del | AAT | --- | 12 | 12 | AY.25 | 0.000072 |
S | 164 | N164N | aaT | aaC | 12 | 12 | AY.44 | 0.000073 |
S | 164 | N164del | AAT | --- | 12 | 12 | B.1 | 0.00011 |
S | 164 | N164N | aaT | aaC | 12 | 12 | B.1.1.519 | 0.000477 |
S | 164 | N164I | aAt | aTt | 12 | 12 | B.1.1.7 | 0.000011 |
S | 164 | N164S | aAt | aGt | 12 | 12 | B.1.131 | 0.105263 |
S | 164 | N164I | aAt | aTt | 12 | 12 | B.1.617.2 | 0.000045 |
S | 164 | N164del | AAT | --- | 11 | 11 | B.1.617.2 | 0.000041 |
S | 164 | N164N | aaT | aaC | 10 | 10 | AY.26 | 0.000283 |
S | 164 | N164N | aaT | aaC | 10 | 10 | AY.5.3 | 0.003374 |
S | 164 | N164N | aaT | aaC | 10 | 10 | AY.75 | 0.00056 |
S | 164 | N164del | AAT | --- | 10 | 10 | B.1.177 | 0.000132 |
S | 164 | N164X | AaT | TaA | 9 | 9 | All | 0.000002 |
S | 164 | N164N | aaT | aaC | 9 | 9 | AY.3 | 0.00009 |
S | 164 | N164H | Aat | Cat | 9 | 9 | AY.4 | 0.000014 |
S | 164 | N164del | AAT | --- | 9 | 9 | AY.4 | 0.000014 |
S | 164 | N164Y | Aat | Tat | 9 | 9 | AY.43 | 0.00004 |
S | 164 | N164N | aaT | aaC | 9 | 9 | P.1 | 0.000142 |
S | 164 | N164del | AAT | --- | 8 | 8 | AY.44 | 0.000049 |
S | 164 | N164S | aAt | aGt | 8 | 8 | C.36 | 0.007286 |
S | 164 | N164S | aAt | aGt | 7 | 7 | AY.25 | 0.000042 |
S | 164 | N164S | aAt | aGt | 7 | 7 | AY.29 | 0.00011 |
S | 164 | N164N | aaT | aaC | 7 | 7 | AY.47 | 0.000218 |
S | 164 | N164T | aAt | aCt | 7 | 7 | B.1.177 | 0.000092 |
S | 164 | N164T | aAt | aCt | 7 | 7 | B.1.617.2 | 0.000026 |
S | 164 | N164S | aAt | aGt | 7 | 7 | B.1.617.2 | 0.000026 |
S | 164 | N164N | aaT | aaC | 6 | 6 | AY.25 | 0.000036 |
S | 164 | N164S | aAt | aGt | 6 | 6 | AY.4 | 0.000009 |
S | 164 | N164del | AAT | --- | 6 | 6 | AY.4.5 | 0.000645 |
S | 164 | N164T | aAt | aCt | 6 | 6 | B.1 | 0.000055 |
S | 164 | N164del | AAT | --- | 6 | 6 | B.1.1 | 0.000109 |
S | 164 | N164D | Aat | Gat | 5 | 5 | AY.4 | 0.000008 |
S | 164 | N164X | AaT | TaA | 5 | 5 | AY.43 | 0.000022 |
S | 164 | N164N | aaT | aaC | 5 | 5 | AY.46 | 0.00052 |
S | 164 | N164N | aaT | aaC | 5 | 5 | B.1.177.86 | 0.000917 |
S | 164 | N164H | Aat | Cat | 5 | 5 | B.1.351 | 0.000149 |
S | 164 | N164Y | AaT | TaC | 2 | 4 | 0.111111 | |
S | 164 | N164Y | Aat | Tat | 2 | 4 | 0.111111 | |
S | 164 | N164del1 | aaT | aa- | 2 | 4 | All | 0 |
S | 164 | N164del1 | Aat | -at | 2 | 4 | All | 0 |
S | 164 | N164N | aaT | aaC | 4 | 4 | AY.100 | 0.000184 |
S | 164 | N164T | aAt | aCt | 4 | 4 | AY.119 | 0.000141 |
S | 164 | N164N | aaT | aaC | 4 | 4 | AY.23 | 0.000279 |
S | 164 | N164S | aAt | aGt | 4 | 4 | AY.26 | 0.000113 |
S | 164 | N164T | aAt | aCt | 4 | 4 | AY.43 | 0.000018 |
S | 164 | N164D | Aat | Gat | 4 | 4 | AY.43 | 0.000018 |
S | 164 | N164I | aAt | aTt | 4 | 4 | B.1.1.214 | 0.000222 |
S | 164 | N164D | Aat | Gat | 4 | 4 | B.1.1.7 | 0.000004 |
S | 164 | N164S | aAt | aGt | 4 | 4 | B.1.221 | 0.000284 |
S | 164 | N164H | Aat | Cat | 4 | 4 | B.1.530 | 0.028571 |
S | 164 | N164I | aAt | aTt | 4 | 4 | B.1.617.1 | 0.000516 |
S | 164 | N164del | AAT | --- | 4 | 4 | B.1.621 | 0.000354 |
S | 164 | N164T | aAt | aCt | 3 | 4 | P.1 | 0.000047 |
S | 164 | N164T | aAT | aCG | 1 | 4 | P.1 | 0.000016 |
S | 164 | N164Y | Aat | Tat | 3 | 3 | AY.102 | 0.00008 |
S | 164 | N164I | aAt | aTt | 3 | 3 | AY.13 | 0.000483 |
S | 164 | N164S | aAt | aGt | 3 | 3 | AY.3 | 0.00003 |
S | 164 | N164N | aaT | aaC | 3 | 3 | AY.33 | 0.0002 |
S | 164 | N164T | aAt | aCt | 3 | 3 | AY.34 | 0.000291 |
S | 164 | N164I | aAt | aTt | 3 | 3 | AY.4 | 0.000005 |
S | 164 | N164S | aAt | aGt | 3 | 3 | AY.44 | 0.000018 |
S | 164 | N164H | Aat | Cat | 3 | 3 | AY.46.1 | 0.00308 |
S | 164 | N164N | aaT | aaC | 3 | 3 | AY.9 | 0.000203 |
S | 164 | N164T | aAt | aCt | 3 | 3 | AY.98 | 0.000237 |
S | 164 | N164K | aaT | aaA | 2 | 3 | B.1 | 0.000018 |
S | 164 | N164K | aaT | aaG | 1 | 3 | B.1 | 0.000009 |
S | 164 | N164T | aAt | aCt | 3 | 3 | B.1.1 | 0.000054 |
S | 164 | N164K | aaT | aaA | 2 | 3 | B.1.1.7 | 0.000002 |
S | 164 | N164K | aaT | aaG | 1 | 3 | B.1.1.7 | 0.000001 |
S | 164 | N164H | Aat | Cat | 3 | 3 | B.1.139 | 0.002199 |
S | 164 | N164S | aAt | aGt | 3 | 3 | B.1.147 | 0.002268 |
S | 164 | N164N | aaT | aaC | 3 | 3 | B.1.160 | 0.000094 |
S | 164 | N164I | aAt | aTt | 3 | 3 | B.1.160 | 0.000094 |
S | 164 | N164S | aAt | aGt | 3 | 3 | B.1.36 | 0.000438 |
S | 164 | N164S | aAt | aGt | 3 | 3 | Q.3 | 0.000435 |
S | 164 | N164H | Aat | Cat | 3 | 3 | Q.4 | 0.001364 |
S | 164 | N164N | aaT | aaC | 2 | 2 | 0.111111 | |
S | 164 | N164del2 | AAt | --t | 2 | 2 | All | 0 |
S | 164 | N164P | AAT | CCG | 1 | 2 | All | 0 |
S | 164 | N164P | AAt | CCt | 1 | 2 | All | 0 |
S | 164 | N164I | aAt | aTt | 2 | 2 | AY.103 | 0.000012 |
S | 164 | N164S | aAt | aGt | 2 | 2 | AY.103 | 0.000012 |
S | 164 | N164T | aAt | aCt | 2 | 2 | AY.120 | 0.000074 |
S | 164 | N164N | aaT | aaC | 2 | 2 | AY.120 | 0.000074 |
S | 164 | N164N | aaT | aaC | 2 | 2 | AY.20 | 0.000078 |
S | 164 | N164del | AAT | --- | 2 | 2 | AY.23 | 0.000139 |
S | 164 | N164H | Aat | Cat | 2 | 2 | AY.25 | 0.000012 |
S | 164 | N164T | aAt | aCt | 2 | 2 | AY.26 | 0.000057 |
S | 164 | N164del | AAT | --- | 2 | 2 | AY.29 | 0.000032 |
S | 164 | N164N | aaT | aaC | 2 | 2 | AY.29 | 0.000032 |
S | 164 | N164del | AAT | --- | 2 | 2 | AY.3 | 0.00002 |
S | 164 | N164D | Aat | Gat | 2 | 2 | AY.3 | 0.00002 |
S | 164 | N164S | aAt | aGt | 2 | 2 | AY.30 | 0.000791 |
S | 164 | N164S | aAt | aGt | 2 | 2 | AY.4.2 | 0.000043 |
S | 164 | N164N | aaT | aaC | 2 | 2 | AY.42 | 0.00008 |
S | 164 | N164S | aAt | aGt | 2 | 2 | AY.42 | 0.00008 |
S | 164 | N164S | aAt | aGt | 2 | 2 | AY.43 | 0.000009 |
S | 164 | N164K | aaT | aaA | 2 | 2 | AY.43 | 0.000009 |
S | 164 | N164T | aAt | aCt | 2 | 2 | AY.44 | 0.000012 |
S | 164 | N164D | Aat | Gat | 2 | 2 | AY.44 | 0.000012 |
S | 164 | N164N | aaT | aaC | 2 | 2 | AY.46.6 | 0.000144 |
S | 164 | N164del | AAT | --- | 2 | 2 | AY.5 | 0.000041 |
S | 164 | N164S | aAt | aGt | 2 | 2 | AY.5 | 0.000041 |
S | 164 | N164N | aaT | aaC | 2 | 2 | AY.6 | 0.000082 |
S | 164 | N164I | aAt | aTt | 2 | 2 | AY.61 | 0.00021 |
S | 164 | N164N | aaT | aaC | 2 | 2 | AY.69 | 0.000373 |
S | 164 | N164K | aaT | aaG | 1 | 2 | AY.69 | 0.000187 |
S | 164 | N164K | aaT | aaA | 1 | 2 | AY.69 | 0.000187 |
S | 164 | N164I | aAt | aTt | 2 | 2 | AY.75.1 | 0.000361 |
S | 164 | N164N | aaT | aaC | 2 | 2 | AY.98.1 | 0.000097 |
S | 164 | N164D | Aat | Gat | 2 | 2 | B.1.1 | 0.000036 |
S | 164 | N164N | aaT | aaC | 2 | 2 | B.1.1 | 0.000036 |
S | 164 | N164N | aaT | aaC | 2 | 2 | B.1.1.189 | 0.003026 |
S | 164 | N164N | aaT | aaC | 2 | 2 | B.1.1.214 | 0.000111 |
S | 164 | N164N | aaT | aaC | 2 | 2 | B.1.1.216 | 0.001781 |
S | 164 | N164N | aaT | aaC | 2 | 2 | B.1.1.243 | 0.008163 |
S | 164 | N164del | AAT | --- | 2 | 2 | B.1.1.315 | 0.016949 |
S | 164 | N164N | aaT | aaC | 2 | 2 | B.1.1.63 | 0.000772 |
S | 164 | N164N | aaT | aaC | 2 | 2 | B.1.160.26 | 0.004843 |
S | 164 | N164S | aAt | aGt | 2 | 2 | B.1.177 | 0.000026 |
S | 164 | N164T | aAt | aCt | 2 | 2 | B.1.177.56 | 0.001335 |
S | 164 | N164del | AAT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 164 | N164del | AAT | --- | 2 | 2 | B.1.260 | 0.006689 |
S | 164 | N164T | aAt | aCt | 2 | 2 | B.1.36 | 0.000292 |
S | 164 | N164S | aAt | aGt | 2 | 2 | B.1.36.17 | 0.000988 |
S | 164 | N164N | aaT | aaC | 2 | 2 | B.1.36.18 | 0.00084 |
S | 164 | N164S | aAt | aGt | 2 | 2 | B.1.429 | 0.000047 |
S | 164 | N164K | aaT | aaA | 2 | 2 | B.1.466.2 | 0.000782 |
S | 164 | N164K | aaT | aaG | 1 | 2 | B.1.617.2 | 0.000004 |
S | 164 | N164K | aaT | aaA | 1 | 2 | B.1.617.2 | 0.000004 |
S | 164 | N164del | AAT | --- | 2 | 2 | C.37.1 | 0.005236 |
S | 164 | N164H | Aat | Cat | 2 | 2 | P.1 | 0.000032 |
S | 164 | N164Y | Aat | Tat | 2 | 2 | P.1 | 0.000032 |
S | 164 | N164P | AAT | CCG | 1 | 2 | P.1 | 0.000016 |
S | 164 | N164P | AAt | CCt | 1 | 2 | P.1 | 0.000016 |
S | 164 | N164del | AAT | --- | 2 | 2 | P.1.7 | 0.000639 |
S | 164 | N164K | aaT | aaA | 1 | 1 | 0.055556 | |
S | 164 | N164del | AAT | --- | 1 | 1 | A | 0.000387 |
S | 164 | N164del | AAT | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 164 | N164del | AAT | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 164 | N164F | AAt | TTt | 1 | 1 | All | 0 |
S | 164 | N164Q | AaT | CaG | 1 | 1 | All | 0 |
S | 164 | N164E | AaT | GaA | 1 | 1 | All | 0 |
S | 164 | N164G | AAT | GGA | 1 | 1 | All | 0 |
S | 164 | N164D | Aat | Gat | 1 | 1 | AY.100 | 0.000046 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.100 | 0.000046 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.102 | 0.000027 |
S | 164 | N164S | aAt | aGt | 1 | 1 | AY.102 | 0.000027 |
S | 164 | N164X | AaT | TaA | 1 | 1 | AY.102 | 0.000027 |
S | 164 | N164H | Aat | Cat | 1 | 1 | AY.103 | 0.000006 |
S | 164 | N164T | aAt | aCt | 1 | 1 | AY.103 | 0.000006 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.103 | 0.000006 |
S | 164 | N164X | AaT | TaA | 1 | 1 | AY.103 | 0.000006 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.108 | 0.001103 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | AY.111 | 0.000183 |
S | 164 | N164H | Aat | Cat | 1 | 1 | AY.113 | 0.000142 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.117 | 0.000085 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.118 | 0.000063 |
S | 164 | N164S | aAt | aGt | 1 | 1 | AY.118 | 0.000063 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.118 | 0.000063 |
S | 164 | N164H | Aat | Cat | 1 | 1 | AY.119 | 0.000035 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.119 | 0.000035 |
S | 164 | N164S | aAt | aGt | 1 | 1 | AY.119 | 0.000035 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.12 | 0.000316 |
S | 164 | N164H | Aat | Cat | 1 | 1 | AY.120 | 0.000037 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.121 | 0.000135 |
S | 164 | N164del1 | Aat | -at | 1 | 1 | AY.121 | 0.000135 |
S | 164 | N164K | aaT | aaA | 1 | 1 | AY.14 | 0.000088 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.14 | 0.000088 |
S | 164 | N164D | Aat | Gat | 1 | 1 | AY.23 | 0.00007 |
S | 164 | N164I | aAt | aTt | 1 | 1 | AY.23 | 0.00007 |
S | 164 | N164H | Aat | Cat | 1 | 1 | AY.23.1 | 0.000417 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.24 | 0.000431 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.24 | 0.000431 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.27 | 0.000065 |
S | 164 | N164I | aAt | aTt | 1 | 1 | AY.29 | 0.000016 |
S | 164 | N164K | aaT | aaG | 1 | 1 | AY.29 | 0.000016 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | AY.3 | 0.00001 |
S | 164 | N164X | AaT | TaA | 1 | 1 | AY.3 | 0.00001 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.3.1 | 0.000085 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.33 | 0.000067 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.39 | 0.000025 |
S | 164 | N164I | aAt | aTt | 1 | 1 | AY.39 | 0.000025 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | AY.39 | 0.000025 |
S | 164 | N164S | aAt | aGt | 1 | 1 | AY.39.1 | 0.00004 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | AY.4 | 0.000002 |
S | 164 | N164T | aAt | aCt | 1 | 1 | AY.4 | 0.000002 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.4.1 | 0.000737 |
S | 164 | N164S | aAt | aGt | 1 | 1 | AY.4.5 | 0.000107 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.40 | 0.000964 |
S | 164 | N164K | aaT | aaA | 1 | 1 | AY.42 | 0.00004 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | AY.42 | 0.00004 |
S | 164 | N164X | AaT | TaA | 1 | 1 | AY.42 | 0.00004 |
S | 164 | N164I | aAt | aTt | 1 | 1 | AY.43 | 0.000004 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.45 | 0.000122 |
S | 164 | N164S | aAt | aGt | 1 | 1 | AY.46 | 0.000104 |
S | 164 | N164H | Aat | Cat | 1 | 1 | AY.46 | 0.000104 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 164 | N164T | aAt | aCt | 1 | 1 | AY.46.5 | 0.000198 |
S | 164 | N164F | AAt | TTt | 1 | 1 | AY.46.6 | 0.000072 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.47 | 0.000031 |
S | 164 | N164H | Aat | Cat | 1 | 1 | AY.47 | 0.000031 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
S | 164 | N164I | aAt | aTt | 1 | 1 | AY.5 | 0.000021 |
S | 164 | N164T | aAt | aCt | 1 | 1 | AY.5 | 0.000021 |
S | 164 | N164S | aAt | aGt | 1 | 1 | AY.5.3 | 0.000337 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.5.4 | 0.000277 |
S | 164 | N164K | aaT | aaG | 1 | 1 | AY.5.4 | 0.000277 |
S | 164 | N164D | Aat | Gat | 1 | 1 | AY.6 | 0.000041 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.61 | 0.000105 |
S | 164 | N164K | aaT | aaA | 1 | 1 | AY.62 | 0.000436 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.62 | 0.000436 |
S | 164 | N164I | aAt | aTt | 1 | 1 | AY.62 | 0.000436 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.67 | 0.000464 |
S | 164 | N164D | Aat | Gat | 1 | 1 | AY.7 | 0.000196 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.7.2 | 0.000559 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | AY.72 | 0.001361 |
S | 164 | N164T | aAt | aCt | 1 | 1 | AY.75 | 0.000056 |
S | 164 | N164I | aAt | aTt | 1 | 1 | AY.75 | 0.000056 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.79 | 0.001211 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.85 | 0.000427 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.9 | 0.000068 |
S | 164 | N164N | aaT | aaC | 1 | 1 | AY.98 | 0.000079 |
S | 164 | N164del | AAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 164 | N164I | aAt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
S | 164 | N164D | Aat | Gat | 1 | 1 | AZ.1 | 0.000867 |
S | 164 | N164del | AAT | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 164 | N164del | AAT | --- | 1 | 1 | B | 0.000128 |
S | 164 | N164H | Aat | Cat | 1 | 1 | B | 0.000128 |
S | 164 | N164T | aAt | aCt | 1 | 1 | B | 0.000128 |
S | 164 | N164H | Aat | Cat | 1 | 1 | B.1 | 0.000009 |
S | 164 | N164E | AaT | GaA | 1 | 1 | B.1 | 0.000009 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | B.1 | 0.000009 |
S | 164 | N164del1 | aaT | aa- | 1 | 1 | B.1 | 0.000009 |
S | 164 | N164S | aAt | aGt | 1 | 1 | B.1 | 0.000009 |
S | 164 | N164D | Aat | Gat | 1 | 1 | B.1 | 0.000009 |
S | 164 | N164I | aAt | aTt | 1 | 1 | B.1.1 | 0.000018 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | B.1.1.121 | 0.002427 |
S | 164 | N164del2 | AAt | --t | 1 | 1 | B.1.1.139 | 0.022727 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.1.170 | 0.001247 |
S | 164 | N164D | Aat | Gat | 1 | 1 | B.1.1.241 | 0.00207 |
S | 164 | N164S | aAt | aGt | 1 | 1 | B.1.1.267 | 0.010101 |
S | 164 | N164S | aAt | aGt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 164 | N164K | aaT | aaA | 1 | 1 | B.1.1.317 | 0.000412 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.1.368 | 0.003086 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 164 | N164D | Aat | Gat | 1 | 1 | B.1.1.434 | 0.000349 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.1.461 | 0.012048 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.1.466 | 0.008696 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
S | 164 | N164del2 | AAt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.1.82 | 0.038462 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.115 | 0.021739 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.177 | 0.000013 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.177.10 | 0.000878 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.177.19 | 0.001431 |
S | 164 | N164T | aAt | aCt | 1 | 1 | B.1.177.21 | 0.000076 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 164 | N164S | aAt | aGt | 1 | 1 | B.1.177.60 | 0.000218 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.177.8 | 0.000752 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.177.85 | 0.005435 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
S | 164 | N164I | aAt | aTt | 1 | 1 | B.1.2 | 0.000009 |
S | 164 | N164Y | Aat | Tat | 1 | 1 | B.1.2 | 0.000009 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 164 | N164del1 | Aat | -at | 1 | 1 | B.1.221 | 0.000071 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.221 | 0.000071 |
S | 164 | N164T | aAt | aCt | 1 | 1 | B.1.23 | 0.006061 |
S | 164 | N164I | aAt | aTt | 1 | 1 | B.1.240 | 0.000216 |
S | 164 | N164T | aAt | aCt | 1 | 1 | B.1.240 | 0.000216 |
S | 164 | N164S | aAt | aGt | 1 | 1 | B.1.243 | 0.00007 |
S | 164 | N164H | Aat | Cat | 1 | 1 | B.1.243 | 0.00007 |
S | 164 | N164T | aAt | aCt | 1 | 1 | B.1.243 | 0.00007 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.258 | 0.000067 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.260 | 0.003344 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.270 | 0.005618 |
S | 164 | N164I | aAt | aTt | 1 | 1 | B.1.305 | 0.002151 |
S | 164 | N164I | aAt | aTt | 1 | 1 | B.1.311 | 0.000275 |
S | 164 | N164G | AAT | GGA | 1 | 1 | B.1.351 | 0.00003 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 164 | N164H | Aat | Cat | 1 | 1 | B.1.36.12 | 0.009615 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.36.38 | 0.001642 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.398 | 0.002976 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.415 | 0.014286 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 164 | N164K | aaT | aaG | 1 | 1 | B.1.429 | 0.000024 |
S | 164 | N164S | aAt | aGt | 1 | 1 | B.1.456 | 0.003268 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.468 | 0.005714 |
S | 164 | N164H | Aat | Cat | 1 | 1 | B.1.474 | 0.001901 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.517 | 0.000427 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.565 | 0.00081 |
S | 164 | N164del1 | aaT | aa- | 1 | 1 | B.1.596 | 0.000087 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 164 | N164T | aAt | aCt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 164 | N164S | aAt | aGt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 164 | N164H | Aat | Cat | 1 | 1 | B.1.617.2 | 0.000004 |
S | 164 | N164D | Aat | Gat | 1 | 1 | B.1.617.2 | 0.000004 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.621 | 0.000089 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.630 | 0.005236 |
S | 164 | N164N | aaT | aaC | 1 | 1 | B.1.637 | 0.000073 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 164 | N164K | aaT | aaG | 1 | 1 | B.1.78 | 0.008547 |
S | 164 | N164del | AAT | --- | 1 | 1 | B.34 | 0.013699 |
S | 164 | N164D | Aat | Gat | 1 | 1 | B.6 | 0.00091 |
S | 164 | N164H | Aat | Cat | 1 | 1 | C.36.3 | 0.000567 |
S | 164 | N164I | aAt | aTt | 1 | 1 | C.36.3 | 0.000567 |
S | 164 | N164S | aAt | aGt | 1 | 1 | C.38 | 0.008065 |
S | 164 | N164D | Aat | Gat | 1 | 1 | D.2 | 0.000075 |
S | 164 | N164I | aAt | aTt | 1 | 1 | D.2 | 0.000075 |
S | 164 | N164D | Aat | Gat | 1 | 1 | P.1 | 0.000016 |
S | 164 | N164Q | AaT | CaG | 1 | 1 | P.1 | 0.000016 |
S | 164 | N164S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
S | 164 | N164K | aaT | aaG | 1 | 1 | P.1 | 0.000016 |
S | 164 | N164del | AAT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 164 | N164I | aAt | aTt | 1 | 1 | P.1.1 | 0.000318 |
S | 164 | N164N | aaT | aaC | 1 | 1 | P.1.14 | 0.000048 |
S | 164 | N164H | Aat | Cat | 1 | 1 | P.1.17 | 0.000162 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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