CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 164

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S164N164TnonsynaAtaCt129412930.99922722052-22054
S164N164TnonsynaATaCG129410.00077279822052-22054
S164N164NsynaaTaaC762762122052-22054
S164N164KnonsynaaTaaG2682530.9440322052-22054
S164N164KnonsynaaTaaA268150.055970222052-22054
S164N164deldelAAT---255255122052-22054
S164N164SnonsynaAtaGt159159122052-22054
S164N164HnonsynAatCat1351340.99259322052-22054
S164N164HnonsynAaTCaC13510.0074074122052-22054
S164N164YnonsynAatTat1021000.98039222052-22054
S164N164YnonsynAaTTaC10220.019607822052-22054
S164N164InonsynaAtaTt6363122052-22054
S164N164DnonsynAatGat3131122052-22054
S164N164XnonsynAaTTaA99122052-22054
S164N164del1delaaTaa-420.522052-22054
S164N164del1delAat-at420.522052-22054
S164N164del2delAAt--t22122052-22054
S164N164PnonsynAATCCG210.522052-22054
S164N164PnonsynAAtCCt210.522052-22054
S164N164FnonsynAAtTTt11122052-22054
S164N164EnonsynAaTGaA11122052-22054
S164N164GnonsynAATGGA11122052-22054
S164N164QnonsynAaTCaG11122052-22054

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S164N164TaAtaCt12931294All0.000247
S164N164TaATaCG11294All0
S164N164NaaTaaC762762All0.000146
S164N164TaAtaCt730730B.1.177.90.972037
S164N164TaAtaCt393393B.1.177.300.987437
S164N164KaaTaaG253268All0.000048
S164N164KaaTaaA15268All0.000003
S164N164delAAT---255255All0.000049
S164N164KaaTaaG244244P.40.927757
S164N164NaaTaaC206206B.1.617.20.000776
S164N164SaAtaGt159159All0.00003
S164N164HAatCat134135All0.000026
S164N164HAaTCaC1135All0
S164N164TaAtaCt109109B.1.1.70.000098
S164N164YAatTat100102All0.000019
S164N164YAaTTaC2102All0
S164N164NaaTaaC9292B.10.000843
S164N164IaAtaTt6363All0.000012
S164N164HAatCat5959AY.30.000587
S164N164NaaTaaC5858AY.40.00009
S164N164YAatTat5050AY.1030.00031
S164N164NaaTaaC4747AY.1020.001246
S164N164NaaTaaC4646B.1.5260.001081
S164N164NaaTaaC3939B.1.1.70.000035
S164N164DAatGat3131All0.000006
S164N164delAAT---3131B.1.1.70.000028
S164N164HAatCat2930B.1.1.70.000026
S164N164HAaTCaC130B.1.1.70.000001
S164N164SaAtaGt2626B.1.1.70.000023
S164N164NaaTaaC2525AY.390.000618
S164N164YAatTat2525B.1.1.70.000022
S164N164delAAT---2222C.370.002553
S164N164delAAT---2121AY.430.000093
S164N164delAAT---2121P.1.150.004879
S164N164SaAtaGt1616AY.1000.000736
S164N164NaaTaaC1616AY.1030.000099
S164N164NaaTaaC1616B.1.1.2070.018913
S164N164delAAT---1616P.10.000252
S164N164NaaTaaC1515AY.430.000066
S164N164NaaTaaC1515B.1.20.000132
S164N164SaAtaGt1313AY.1200.000483
S164N164delAAT---1212AY.250.000072
S164N164NaaTaaC1212AY.440.000073
S164N164delAAT---1212B.10.00011
S164N164NaaTaaC1212B.1.1.5190.000477
S164N164IaAtaTt1212B.1.1.70.000011
S164N164SaAtaGt1212B.1.1310.105263
S164N164IaAtaTt1212B.1.617.20.000045
S164N164delAAT---1111B.1.617.20.000041
S164N164NaaTaaC1010AY.260.000283
S164N164NaaTaaC1010AY.5.30.003374
S164N164NaaTaaC1010AY.750.00056
S164N164delAAT---1010B.1.1770.000132
S164N164XAaTTaA99All0.000002
S164N164NaaTaaC99AY.30.00009
S164N164HAatCat99AY.40.000014
S164N164delAAT---99AY.40.000014
S164N164YAatTat99AY.430.00004
S164N164NaaTaaC99P.10.000142
S164N164delAAT---88AY.440.000049
S164N164SaAtaGt88C.360.007286
S164N164SaAtaGt77AY.250.000042
S164N164SaAtaGt77AY.290.00011
S164N164NaaTaaC77AY.470.000218
S164N164TaAtaCt77B.1.1770.000092
S164N164TaAtaCt77B.1.617.20.000026
S164N164SaAtaGt77B.1.617.20.000026
S164N164NaaTaaC66AY.250.000036
S164N164SaAtaGt66AY.40.000009
S164N164delAAT---66AY.4.50.000645
S164N164TaAtaCt66B.10.000055
S164N164delAAT---66B.1.10.000109
S164N164DAatGat55AY.40.000008
S164N164XAaTTaA55AY.430.000022
S164N164NaaTaaC55AY.460.00052
S164N164NaaTaaC55B.1.177.860.000917
S164N164HAatCat55B.1.3510.000149
S164N164YAaTTaC240.111111
S164N164YAatTat240.111111
S164N164del1aaTaa-24All0
S164N164del1Aat-at24All0
S164N164NaaTaaC44AY.1000.000184
S164N164TaAtaCt44AY.1190.000141
S164N164NaaTaaC44AY.230.000279
S164N164SaAtaGt44AY.260.000113
S164N164TaAtaCt44AY.430.000018
S164N164DAatGat44AY.430.000018
S164N164IaAtaTt44B.1.1.2140.000222
S164N164DAatGat44B.1.1.70.000004
S164N164SaAtaGt44B.1.2210.000284
S164N164HAatCat44B.1.5300.028571
S164N164IaAtaTt44B.1.617.10.000516
S164N164delAAT---44B.1.6210.000354
S164N164TaAtaCt34P.10.000047
S164N164TaATaCG14P.10.000016
S164N164YAatTat33AY.1020.00008
S164N164IaAtaTt33AY.130.000483
S164N164SaAtaGt33AY.30.00003
S164N164NaaTaaC33AY.330.0002
S164N164TaAtaCt33AY.340.000291
S164N164IaAtaTt33AY.40.000005
S164N164SaAtaGt33AY.440.000018
S164N164HAatCat33AY.46.10.00308
S164N164NaaTaaC33AY.90.000203
S164N164TaAtaCt33AY.980.000237
S164N164KaaTaaA23B.10.000018
S164N164KaaTaaG13B.10.000009
S164N164TaAtaCt33B.1.10.000054
S164N164KaaTaaA23B.1.1.70.000002
S164N164KaaTaaG13B.1.1.70.000001
S164N164HAatCat33B.1.1390.002199
S164N164SaAtaGt33B.1.1470.002268
S164N164NaaTaaC33B.1.1600.000094
S164N164IaAtaTt33B.1.1600.000094
S164N164SaAtaGt33B.1.360.000438
S164N164SaAtaGt33Q.30.000435
S164N164HAatCat33Q.40.001364
S164N164NaaTaaC220.111111
S164N164del2AAt--t22All0
S164N164PAATCCG12All0
S164N164PAAtCCt12All0
S164N164IaAtaTt22AY.1030.000012
S164N164SaAtaGt22AY.1030.000012
S164N164TaAtaCt22AY.1200.000074
S164N164NaaTaaC22AY.1200.000074
S164N164NaaTaaC22AY.200.000078
S164N164delAAT---22AY.230.000139
S164N164HAatCat22AY.250.000012
S164N164TaAtaCt22AY.260.000057
S164N164delAAT---22AY.290.000032
S164N164NaaTaaC22AY.290.000032
S164N164delAAT---22AY.30.00002
S164N164DAatGat22AY.30.00002
S164N164SaAtaGt22AY.300.000791
S164N164SaAtaGt22AY.4.20.000043
S164N164NaaTaaC22AY.420.00008
S164N164SaAtaGt22AY.420.00008
S164N164SaAtaGt22AY.430.000009
S164N164KaaTaaA22AY.430.000009
S164N164TaAtaCt22AY.440.000012
S164N164DAatGat22AY.440.000012
S164N164NaaTaaC22AY.46.60.000144
S164N164delAAT---22AY.50.000041
S164N164SaAtaGt22AY.50.000041
S164N164NaaTaaC22AY.60.000082
S164N164IaAtaTt22AY.610.00021
S164N164NaaTaaC22AY.690.000373
S164N164KaaTaaG12AY.690.000187
S164N164KaaTaaA12AY.690.000187
S164N164IaAtaTt22AY.75.10.000361
S164N164NaaTaaC22AY.98.10.000097
S164N164DAatGat22B.1.10.000036
S164N164NaaTaaC22B.1.10.000036
S164N164NaaTaaC22B.1.1.1890.003026
S164N164NaaTaaC22B.1.1.2140.000111
S164N164NaaTaaC22B.1.1.2160.001781
S164N164NaaTaaC22B.1.1.2430.008163
S164N164delAAT---22B.1.1.3150.016949
S164N164NaaTaaC22B.1.1.630.000772
S164N164NaaTaaC22B.1.160.260.004843
S164N164SaAtaGt22B.1.1770.000026
S164N164TaAtaCt22B.1.177.560.001335
S164N164delAAT---22B.1.20.000018
S164N164delAAT---22B.1.2600.006689
S164N164TaAtaCt22B.1.360.000292
S164N164SaAtaGt22B.1.36.170.000988
S164N164NaaTaaC22B.1.36.180.00084
S164N164SaAtaGt22B.1.4290.000047
S164N164KaaTaaA22B.1.466.20.000782
S164N164KaaTaaG12B.1.617.20.000004
S164N164KaaTaaA12B.1.617.20.000004
S164N164delAAT---22C.37.10.005236
S164N164HAatCat22P.10.000032
S164N164YAatTat22P.10.000032
S164N164PAATCCG12P.10.000016
S164N164PAAtCCt12P.10.000016
S164N164delAAT---22P.1.70.000639
S164N164KaaTaaA110.055556
S164N164delAAT---11A0.000387
S164N164delAAT---11A.2.40.003367
S164N164delAAT---11A.2.50.000499
S164N164FAAtTTt11All0
S164N164QAaTCaG11All0
S164N164EAaTGaA11All0
S164N164GAATGGA11All0
S164N164DAatGat11AY.1000.000046
S164N164delAAT---11AY.1000.000046
S164N164delAAT---11AY.1020.000027
S164N164SaAtaGt11AY.1020.000027
S164N164XAaTTaA11AY.1020.000027
S164N164HAatCat11AY.1030.000006
S164N164TaAtaCt11AY.1030.000006
S164N164delAAT---11AY.1030.000006
S164N164XAaTTaA11AY.1030.000006
S164N164NaaTaaC11AY.1080.001103
S164N164YAatTat11AY.1110.000183
S164N164HAatCat11AY.1130.000142
S164N164NaaTaaC11AY.1170.000085
S164N164NaaTaaC11AY.1180.000063
S164N164SaAtaGt11AY.1180.000063
S164N164delAAT---11AY.1180.000063
S164N164HAatCat11AY.1190.000035
S164N164NaaTaaC11AY.1190.000035
S164N164SaAtaGt11AY.1190.000035
S164N164NaaTaaC11AY.120.000316
S164N164HAatCat11AY.1200.000037
S164N164delAAT---11AY.1200.000037
S164N164delAAT---11AY.1210.000135
S164N164del1Aat-at11AY.1210.000135
S164N164KaaTaaA11AY.140.000088
S164N164NaaTaaC11AY.140.000088
S164N164DAatGat11AY.230.00007
S164N164IaAtaTt11AY.230.00007
S164N164HAatCat11AY.23.10.000417
S164N164delAAT---11AY.240.000431
S164N164NaaTaaC11AY.240.000431
S164N164NaaTaaC11AY.270.000065
S164N164IaAtaTt11AY.290.000016
S164N164KaaTaaG11AY.290.000016
S164N164YAatTat11AY.30.00001
S164N164XAaTTaA11AY.30.00001
S164N164NaaTaaC11AY.3.10.000085
S164N164delAAT---11AY.330.000067
S164N164delAAT---11AY.390.000025
S164N164IaAtaTt11AY.390.000025
S164N164YAatTat11AY.390.000025
S164N164SaAtaGt11AY.39.10.00004
S164N164YAatTat11AY.40.000002
S164N164TaAtaCt11AY.40.000002
S164N164NaaTaaC11AY.4.10.000737
S164N164SaAtaGt11AY.4.50.000107
S164N164NaaTaaC11AY.400.000964
S164N164KaaTaaA11AY.420.00004
S164N164YAatTat11AY.420.00004
S164N164XAaTTaA11AY.420.00004
S164N164IaAtaTt11AY.430.000004
S164N164NaaTaaC11AY.450.000122
S164N164SaAtaGt11AY.460.000104
S164N164HAatCat11AY.460.000104
S164N164delAAT---11AY.46.20.000635
S164N164TaAtaCt11AY.46.50.000198
S164N164FAAtTTt11AY.46.60.000072
S164N164delAAT---11AY.470.000031
S164N164HAatCat11AY.470.000031
S164N164NaaTaaC11AY.50.000021
S164N164IaAtaTt11AY.50.000021
S164N164TaAtaCt11AY.50.000021
S164N164SaAtaGt11AY.5.30.000337
S164N164NaaTaaC11AY.5.40.000277
S164N164KaaTaaG11AY.5.40.000277
S164N164DAatGat11AY.60.000041
S164N164delAAT---11AY.600.000938
S164N164NaaTaaC11AY.610.000105
S164N164KaaTaaA11AY.620.000436
S164N164delAAT---11AY.620.000436
S164N164IaAtaTt11AY.620.000436
S164N164NaaTaaC11AY.670.000464
S164N164DAatGat11AY.70.000196
S164N164delAAT---11AY.7.20.000559
S164N164YAatTat11AY.720.001361
S164N164TaAtaCt11AY.750.000056
S164N164IaAtaTt11AY.750.000056
S164N164NaaTaaC11AY.790.001211
S164N164delAAT---11AY.850.000427
S164N164delAAT---11AY.90.000068
S164N164NaaTaaC11AY.980.000079
S164N164delAAT---11AY.98.10.000048
S164N164IaAtaTt11AY.99.20.000092
S164N164DAatGat11AZ.10.000867
S164N164delAAT---11AZ.20.000821
S164N164delAAT---11B0.000128
S164N164HAatCat11B0.000128
S164N164TaAtaCt11B0.000128
S164N164HAatCat11B.10.000009
S164N164EAaTGaA11B.10.000009
S164N164YAatTat11B.10.000009
S164N164del1aaTaa-11B.10.000009
S164N164SaAtaGt11B.10.000009
S164N164DAatGat11B.10.000009
S164N164IaAtaTt11B.1.10.000018
S164N164YAatTat11B.1.1.1210.002427
S164N164del2AAt--t11B.1.1.1390.022727
S164N164NaaTaaC11B.1.1.1700.001247
S164N164DAatGat11B.1.1.2410.00207
S164N164SaAtaGt11B.1.1.2670.010101
S164N164SaAtaGt11B.1.1.280.000311
S164N164delAAT---11B.1.1.3110.000358
S164N164KaaTaaA11B.1.1.3170.000412
S164N164NaaTaaC11B.1.1.3680.003086
S164N164delAAT---11B.1.1.390.00051
S164N164DAatGat11B.1.1.4340.000349
S164N164NaaTaaC11B.1.1.4610.012048
S164N164NaaTaaC11B.1.1.4660.008696
S164N164delAAT---11B.1.1.5190.00004
S164N164del2AAt--t11B.1.1.70.000001
S164N164NaaTaaC11B.1.1.820.038462
S164N164delAAT---11B.1.1150.021739
S164N164delAAT---11B.1.1400.018868
S164N164delAAT---11B.1.1600.000031
S164N164delAAT---11B.1.160.230.004831
S164N164NaaTaaC11B.1.1770.000013
S164N164NaaTaaC11B.1.177.100.000878
S164N164delAAT---11B.1.177.160.000664
S164N164NaaTaaC11B.1.177.190.001431
S164N164TaAtaCt11B.1.177.210.000076
S164N164delAAT---11B.1.177.40.000211
S164N164delAAT---11B.1.177.60.000977
S164N164SaAtaGt11B.1.177.600.000218
S164N164delAAT---11B.1.177.620.001192
S164N164NaaTaaC11B.1.177.80.000752
S164N164NaaTaaC11B.1.177.850.005435
S164N164delAAT---11B.1.177.870.000728
S164N164IaAtaTt11B.1.20.000009
S164N164YAatTat11B.1.20.000009
S164N164delAAT---11B.1.2180.005155
S164N164del1Aat-at11B.1.2210.000071
S164N164NaaTaaC11B.1.2210.000071
S164N164TaAtaCt11B.1.230.006061
S164N164IaAtaTt11B.1.2400.000216
S164N164TaAtaCt11B.1.2400.000216
S164N164SaAtaGt11B.1.2430.00007
S164N164HAatCat11B.1.2430.00007
S164N164TaAtaCt11B.1.2430.00007
S164N164NaaTaaC11B.1.2580.000067
S164N164NaaTaaC11B.1.2600.003344
S164N164NaaTaaC11B.1.2700.005618
S164N164IaAtaTt11B.1.3050.002151
S164N164IaAtaTt11B.1.3110.000275
S164N164GAATGGA11B.1.3510.00003
S164N164delAAT---11B.1.3510.00003
S164N164HAatCat11B.1.36.120.009615
S164N164delAAT---11B.1.36.180.00042
S164N164NaaTaaC11B.1.36.380.001642
S164N164NaaTaaC11B.1.3980.002976
S164N164delAAT---11B.1.4150.014286
S164N164delAAT---11B.1.4270.00005
S164N164KaaTaaG11B.1.4290.000024
S164N164SaAtaGt11B.1.4560.003268
S164N164NaaTaaC11B.1.4680.005714
S164N164HAatCat11B.1.4740.001901
S164N164NaaTaaC11B.1.5170.000427
S164N164delAAT---11B.1.5250.000113
S164N164delAAT---11B.1.5610.000397
S164N164NaaTaaC11B.1.5650.00081
S164N164del1aaTaa-11B.1.5960.000087
S164N164delAAT---11B.1.5960.000087
S164N164TaAtaCt11B.1.617.10.000129
S164N164delAAT---11B.1.617.10.000129
S164N164SaAtaGt11B.1.617.10.000129
S164N164HAatCat11B.1.617.20.000004
S164N164DAatGat11B.1.617.20.000004
S164N164delAAT---11B.1.6200.000946
S164N164NaaTaaC11B.1.6210.000089
S164N164delAAT---11B.1.621.10.000506
S164N164NaaTaaC11B.1.6300.005236
S164N164NaaTaaC11B.1.6370.000073
S164N164delAAT---11B.1.6380.052632
S164N164KaaTaaG11B.1.780.008547
S164N164delAAT---11B.340.013699
S164N164DAatGat11B.60.00091
S164N164HAatCat11C.36.30.000567
S164N164IaAtaTt11C.36.30.000567
S164N164SaAtaGt11C.380.008065
S164N164DAatGat11D.20.000075
S164N164IaAtaTt11D.20.000075
S164N164DAatGat11P.10.000016
S164N164QAaTCaG11P.10.000016
S164N164SaAtaGt11P.10.000016
S164N164KaaTaaG11P.10.000016
S164N164delAAT---11P.1.10.000318
S164N164IaAtaTt11P.1.10.000318
S164N164NaaTaaC11P.1.140.000048
S164N164HAatCat11P.1.170.000162