CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 163 | A163A | syn | gcG | gcC | 19456 | 14706 | 0.755859 | 22049-22051 | |
S | 163 | A163A | syn | gcG | gcT | 19456 | 4596 | 0.236225 | 22049-22051 | |
S | 163 | A163A | syn | gcG | gcA | 19456 | 154 | 0.0079153 | 22049-22051 | |
S | 163 | A163V | nonsyn | gCg | gTg | 849 | 841 | 0.990577 | 22049-22051 | |
S | 163 | A163V | nonsyn | gCG | gTA | 849 | 6 | 0.00706714 | 22049-22051 | |
S | 163 | A163V | nonsyn | gCG | gTT | 849 | 1 | 0.00117786 | 22049-22051 | |
S | 163 | A163V | nonsyn | gCG | gTC | 849 | 1 | 0.00117786 | 22049-22051 | |
S | 163 | A163del | del | GCG | --- | 264 | 264 | 1 | 22049-22051 | |
S | 163 | A163S | nonsyn | Gcg | Tcg | 213 | 204 | 0.957747 | 22049-22051 | |
S | 163 | A163S | nonsyn | GcG | TcT | 213 | 5 | 0.0234742 | 22049-22051 | |
S | 163 | A163S | nonsyn | GCG | AGT | 213 | 2 | 0.00938967 | 22049-22051 | |
S | 163 | A163S | nonsyn | GcG | TcC | 213 | 2 | 0.00938967 | 22049-22051 | |
S | 163 | A163E | nonsyn | gCg | gAg | 58 | 58 | 1 | 22049-22051 | |
S | 163 | A163T | nonsyn | Gcg | Acg | 48 | 44 | 0.916667 | 22049-22051 | |
S | 163 | A163T | nonsyn | GcG | AcT | 48 | 3 | 0.0625 | 22049-22051 | |
S | 163 | A163T | nonsyn | GcG | AcC | 48 | 1 | 0.0208333 | 22049-22051 | |
S | 163 | A163G | nonsyn | gCg | gGg | 12 | 8 | 0.666667 | 22049-22051 | |
S | 163 | A163G | nonsyn | gCG | gGC | 12 | 2 | 0.166667 | 22049-22051 | |
S | 163 | A163G | nonsyn | gCG | gGT | 12 | 2 | 0.166667 | 22049-22051 | |
S | 163 | A163del1 | del | Gcg | -cg | 6 | 3 | 0.5 | 22049-22051 | |
S | 163 | A163del1 | del | gcG | gc- | 6 | 1 | 0.166667 | 22049-22051 | |
S | 163 | A163del1 | del | GcG | -cN | 6 | 1 | 0.166667 | 22049-22051 | |
S | 163 | A163del1 | del | GCG | -NN | 6 | 1 | 0.166667 | 22049-22051 | |
S | 163 | A163P | nonsyn | Gcg | Ccg | 5 | 5 | 1 | 22049-22051 | |
S | 163 | A163W | nonsyn | GCg | TGg | 3 | 3 | 1 | 22049-22051 | |
S | 163 | A163del2 | del | GCg | --g | 3 | 2 | 0.666667 | 22049-22051 | |
S | 163 | A163del2 | del | gCG | g-- | 3 | 1 | 0.333333 | 22049-22051 | |
S | 163 | A163R | nonsyn | GCg | AGg | 2 | 2 | 1 | 22049-22051 | |
S | 163 | A163C | nonsyn | GCG | TGC | 2 | 2 | 1 | 22049-22051 | |
S | 163 | A163I | nonsyn | GCG | ATT | 1 | 1 | 1 | 22049-22051 | |
S | 163 | A163Q | nonsyn | GCg | CAg | 1 | 1 | 1 | 22049-22051 | |
S | 163 | A163L | nonsyn | GCg | TTg | 1 | 1 | 1 | 22049-22051 | |
S | 163 | A163K | nonsyn | GCg | AAg | 1 | 1 | 1 | 22049-22051 | |
S | 163 | A163M | nonsyn | GCg | ATg | 1 | 1 | 1 | 22049-22051 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 163 | A163A | gcG | gcC | 14706 | 19456 | All | 0.002813 |
S | 163 | A163A | gcG | gcT | 4596 | 19456 | All | 0.000879 |
S | 163 | A163A | gcG | gcA | 154 | 19456 | All | 0.000029 |
S | 163 | A163A | gcG | gcC | 14202 | 14387 | AY.4 | 0.022104 |
S | 163 | A163A | gcG | gcT | 182 | 14387 | AY.4 | 0.000283 |
S | 163 | A163A | gcG | gcA | 3 | 14387 | AY.4 | 0.000005 |
S | 163 | A163A | gcG | gcT | 1520 | 1520 | B.1.177.15 | 0.958991 |
S | 163 | A163V | gCg | gTg | 841 | 849 | All | 0.000161 |
S | 163 | A163V | gCG | gTA | 6 | 849 | All | 0.000001 |
S | 163 | A163V | gCG | gTT | 1 | 849 | All | 0 |
S | 163 | A163V | gCG | gTC | 1 | 849 | All | 0 |
S | 163 | A163A | gcG | gcT | 497 | 570 | B.1.1.7 | 0.000445 |
S | 163 | A163A | gcG | gcA | 43 | 570 | B.1.1.7 | 0.000038 |
S | 163 | A163A | gcG | gcC | 30 | 570 | B.1.1.7 | 0.000027 |
S | 163 | A163A | gcG | gcT | 182 | 371 | B.1.617.2 | 0.000685 |
S | 163 | A163A | gcG | gcC | 175 | 371 | B.1.617.2 | 0.000659 |
S | 163 | A163A | gcG | gcA | 14 | 371 | B.1.617.2 | 0.000053 |
S | 163 | A163V | gCg | gTg | 294 | 294 | B.1.243 | 0.020458 |
S | 163 | A163A | gcG | gcT | 288 | 288 | AY.63 | 0.111412 |
S | 163 | A163del | GCG | --- | 264 | 264 | All | 0.00005 |
S | 163 | A163S | Gcg | Tcg | 204 | 213 | All | 0.000039 |
S | 163 | A163S | GcG | TcT | 5 | 213 | All | 0.000001 |
S | 163 | A163S | GCG | AGT | 2 | 213 | All | 0 |
S | 163 | A163S | GcG | TcC | 2 | 213 | All | 0 |
S | 163 | A163A | gcG | gcT | 130 | 139 | B.1.177 | 0.001712 |
S | 163 | A163A | gcG | gcA | 9 | 139 | B.1.177 | 0.000119 |
S | 163 | A163A | gcG | gcT | 138 | 138 | AA.1 | 1 |
S | 163 | A163A | gcG | gcT | 67 | 136 | AY.43 | 0.000297 |
S | 163 | A163A | gcG | gcC | 63 | 136 | AY.43 | 0.000279 |
S | 163 | A163A | gcG | gcA | 6 | 136 | AY.43 | 0.000027 |
S | 163 | A163A | gcG | gcT | 130 | 130 | AA.2 | 1 |
S | 163 | A163V | gCg | gTg | 119 | 120 | AY.4 | 0.000185 |
S | 163 | A163V | gCG | gTC | 1 | 120 | AY.4 | 0.000002 |
S | 163 | A163A | gcG | gcT | 110 | 110 | AA.4 | 1 |
S | 163 | A163A | gcG | gcT | 109 | 109 | AA.7 | 1 |
S | 163 | A163A | gcG | gcC | 69 | 96 | AY.39 | 0.001705 |
S | 163 | A163A | gcG | gcT | 26 | 96 | AY.39 | 0.000642 |
S | 163 | A163A | gcG | gcA | 1 | 96 | AY.39 | 0.000025 |
S | 163 | A163V | gCg | gTg | 88 | 88 | B.1.1.7 | 0.000079 |
S | 163 | A163A | gcG | gcT | 44 | 81 | AY.47 | 0.001369 |
S | 163 | A163A | gcG | gcC | 37 | 81 | AY.47 | 0.001151 |
S | 163 | A163A | gcG | gcT | 74 | 74 | AY.114 | 0.017102 |
S | 163 | A163S | Gcg | Tcg | 65 | 66 | B.1.1 | 0.001179 |
S | 163 | A163S | GcG | TcC | 1 | 66 | B.1.1 | 0.000018 |
S | 163 | A163A | gcG | gcT | 62 | 62 | AA.5 | 1 |
S | 163 | A163A | gcG | gcT | 62 | 62 | AA.6 | 1 |
S | 163 | A163E | gCg | gAg | 58 | 58 | All | 0.000011 |
S | 163 | A163A | gcG | gcT | 44 | 53 | B.1 | 0.000403 |
S | 163 | A163A | gcG | gcA | 7 | 53 | B.1 | 0.000064 |
S | 163 | A163A | gcG | gcC | 2 | 53 | B.1 | 0.000018 |
S | 163 | A163A | gcG | gcT | 49 | 49 | P.1.14 | 0.002342 |
S | 163 | A163T | Gcg | Acg | 44 | 48 | All | 0.000008 |
S | 163 | A163T | GcG | AcT | 3 | 48 | All | 0.000001 |
S | 163 | A163T | GcG | AcC | 1 | 48 | All | 0 |
S | 163 | A163A | gcG | gcT | 45 | 45 | AA.8 | 1 |
S | 163 | A163A | gcG | gcT | 31 | 40 | AY.3 | 0.000308 |
S | 163 | A163A | gcG | gcC | 8 | 40 | AY.3 | 0.00008 |
S | 163 | A163A | gcG | gcA | 1 | 40 | AY.3 | 0.00001 |
S | 163 | A163A | gcG | gcT | 39 | 40 | AY.7.1 | 0.004395 |
S | 163 | A163A | gcG | gcA | 1 | 40 | AY.7.1 | 0.000113 |
S | 163 | A163A | gcG | gcT | 34 | 39 | AY.44 | 0.000207 |
S | 163 | A163A | gcG | gcC | 3 | 39 | AY.44 | 0.000018 |
S | 163 | A163A | gcG | gcA | 2 | 39 | AY.44 | 0.000012 |
S | 163 | A163A | gcG | gcC | 39 | 39 | AY.53 | 0.011213 |
S | 163 | A163S | Gcg | Tcg | 38 | 38 | B.1.1.7 | 0.000034 |
S | 163 | A163A | gcG | gcT | 37 | 37 | AA.3 | 1 |
S | 163 | A163A | gcG | gcT | 29 | 37 | P.1 | 0.000457 |
S | 163 | A163A | gcG | gcA | 6 | 37 | P.1 | 0.000095 |
S | 163 | A163A | gcG | gcC | 2 | 37 | P.1 | 0.000032 |
S | 163 | A163E | gCg | gAg | 35 | 35 | AY.14 | 0.00308 |
S | 163 | A163del | GCG | --- | 32 | 32 | B.1.1.7 | 0.000029 |
S | 163 | A163A | gcG | gcT | 30 | 31 | AY.5 | 0.000619 |
S | 163 | A163A | gcG | gcC | 1 | 31 | AY.5 | 0.000021 |
S | 163 | A163A | gcG | gcT | 29 | 29 | AY.25 | 0.000174 |
S | 163 | A163del | GCG | --- | 29 | 29 | C.37 | 0.003366 |
S | 163 | A163A | gcG | gcT | 27 | 27 | AY.98.1 | 0.001308 |
S | 163 | A163A | gcG | gcT | 24 | 27 | B.1.2 | 0.000211 |
S | 163 | A163A | gcG | gcC | 2 | 27 | B.1.2 | 0.000018 |
S | 163 | A163A | gcG | gcA | 1 | 27 | B.1.2 | 0.000009 |
S | 163 | A163A | gcG | gcT | 26 | 26 | AY.87 | 0.021649 |
S | 163 | A163A | gcG | gcT | 22 | 24 | B.1.1 | 0.000399 |
S | 163 | A163A | gcG | gcC | 2 | 24 | B.1.1 | 0.000036 |
S | 163 | A163A | gcG | gcT | 24 | 24 | B.1.1.519 | 0.000953 |
S | 163 | A163V | gCg | gTg | 24 | 24 | B.1.617.2 | 0.00009 |
S | 163 | A163V | gCg | gTg | 23 | 23 | Q.7 | 0.025556 |
S | 163 | A163A | gcG | gcT | 19 | 22 | AY.103 | 0.000118 |
S | 163 | A163A | gcG | gcA | 2 | 22 | AY.103 | 0.000012 |
S | 163 | A163A | gcG | gcC | 1 | 22 | AY.103 | 0.000006 |
S | 163 | A163del | GCG | --- | 22 | 22 | AY.43 | 0.000097 |
S | 163 | A163S | Gcg | Tcg | 21 | 22 | AY.43 | 0.000093 |
S | 163 | A163S | GcG | TcT | 1 | 22 | AY.43 | 0.000004 |
S | 163 | A163V | gCg | gTg | 22 | 22 | B.1.36.16 | 0.031339 |
S | 163 | A163del | GCG | --- | 21 | 21 | P.1.15 | 0.004879 |
S | 163 | A163A | gcG | gcT | 18 | 20 | B.1.36 | 0.002626 |
S | 163 | A163A | gcG | gcA | 2 | 20 | B.1.36 | 0.000292 |
S | 163 | A163V | gCg | gTg | 18 | 18 | AY.44 | 0.00011 |
S | 163 | A163A | gcG | gcT | 11 | 18 | B.1.160 | 0.000343 |
S | 163 | A163A | gcG | gcC | 6 | 18 | B.1.160 | 0.000187 |
S | 163 | A163A | gcG | gcA | 1 | 18 | B.1.160 | 0.000031 |
S | 163 | A163A | gcG | gcT | 16 | 17 | AY.120 | 0.000595 |
S | 163 | A163A | gcG | gcC | 1 | 17 | AY.120 | 0.000037 |
S | 163 | A163V | gCg | gTg | 17 | 17 | AY.34 | 0.001648 |
S | 163 | A163A | gcG | gcC | 9 | 17 | AY.42 | 0.000362 |
S | 163 | A163A | gcG | gcT | 7 | 17 | AY.42 | 0.000282 |
S | 163 | A163A | gcG | gcA | 1 | 17 | AY.42 | 0.00004 |
S | 163 | A163A | gcG | gcT | 16 | 16 | AY.5.4 | 0.004427 |
S | 163 | A163del | GCG | --- | 16 | 16 | P.1 | 0.000252 |
S | 163 | A163A | gcG | gcT | 12 | 15 | AY.6 | 0.000494 |
S | 163 | A163A | gcG | gcC | 2 | 15 | AY.6 | 0.000082 |
S | 163 | A163A | gcG | gcA | 1 | 15 | AY.6 | 0.000041 |
S | 163 | A163A | gcG | gcT | 10 | 15 | AY.9.2 | 0.000367 |
S | 163 | A163A | gcG | gcA | 3 | 15 | AY.9.2 | 0.00011 |
S | 163 | A163A | gcG | gcC | 2 | 15 | AY.9.2 | 0.000073 |
S | 163 | A163A | gcG | gcT | 15 | 15 | B.1.1.25 | 0.008528 |
S | 163 | A163A | gcG | gcT | 14 | 14 | AY.9 | 0.000946 |
S | 163 | A163V | gCg | gTg | 14 | 14 | B.1.526 | 0.000329 |
S | 163 | A163A | gcG | gcC | 10 | 13 | B.1.177.81 | 0.001893 |
S | 163 | A163A | gcG | gcT | 2 | 13 | B.1.177.81 | 0.000379 |
S | 163 | A163A | gcG | gcA | 1 | 13 | B.1.177.81 | 0.000189 |
S | 163 | A163V | gCg | gTg | 13 | 13 | B.1.2 | 0.000114 |
S | 163 | A163A | gcG | gcT | 8 | 13 | B.1.429 | 0.000188 |
S | 163 | A163A | gcG | gcA | 5 | 13 | B.1.429 | 0.000118 |
S | 163 | A163G | gCg | gGg | 8 | 12 | All | 0.000002 |
S | 163 | A163G | gCG | gGT | 2 | 12 | All | 0 |
S | 163 | A163G | gCG | gGC | 2 | 12 | All | 0 |
S | 163 | A163del | GCG | --- | 11 | 11 | AY.25 | 0.000066 |
S | 163 | A163V | gCg | gTg | 11 | 11 | B.1 | 0.000101 |
S | 163 | A163V | gCg | gTg | 11 | 11 | B.1.525 | 0.001245 |
S | 163 | A163V | gCg | gTg | 11 | 11 | B.1.570 | 0.032353 |
S | 163 | A163A | gcG | gcT | 11 | 11 | C.37 | 0.001277 |
S | 163 | A163A | gcG | gcT | 9 | 10 | AY.26 | 0.000255 |
S | 163 | A163A | gcG | gcC | 1 | 10 | AY.26 | 0.000028 |
S | 163 | A163V | gCg | gTg | 8 | 10 | AY.43 | 0.000035 |
S | 163 | A163V | gCG | gTA | 2 | 10 | AY.43 | 0.000009 |
S | 163 | A163del | GCG | --- | 10 | 10 | B.1 | 0.000092 |
S | 163 | A163del | GCG | --- | 10 | 10 | B.1.177 | 0.000132 |
S | 163 | A163A | gcG | gcT | 9 | 10 | B.1.221 | 0.000639 |
S | 163 | A163A | gcG | gcC | 1 | 10 | B.1.221 | 0.000071 |
S | 163 | A163A | gcG | gcA | 5 | 10 | P.2 | 0.000933 |
S | 163 | A163A | gcG | gcT | 5 | 10 | P.2 | 0.000933 |
S | 163 | A163del | GCG | --- | 9 | 9 | AY.4 | 0.000014 |
S | 163 | A163S | Gcg | Tcg | 8 | 9 | B.1 | 0.000073 |
S | 163 | A163S | GcG | TcC | 1 | 9 | B.1 | 0.000009 |
S | 163 | A163T | Gcg | Acg | 9 | 9 | B.1.1.7 | 0.000008 |
S | 163 | A163A | gcG | gcT | 9 | 9 | B.1.210 | 0.01919 |
S | 163 | A163del | GCG | --- | 9 | 9 | B.1.617.2 | 0.000034 |
S | 163 | A163T | Gcg | Acg | 5 | 8 | 0.277778 | |
S | 163 | A163T | GcG | AcT | 3 | 8 | 0.166667 | |
S | 163 | A163V | gCg | gTg | 8 | 8 | AY.10 | 0.00424 |
S | 163 | A163V | gCg | gTg | 7 | 8 | AY.103 | 0.000043 |
S | 163 | A163V | gCG | gTA | 1 | 8 | AY.103 | 0.000006 |
S | 163 | A163A | gcG | gcT | 8 | 8 | AY.119 | 0.000282 |
S | 163 | A163A | gcG | gcT | 8 | 8 | AY.34 | 0.000776 |
S | 163 | A163del | GCG | --- | 8 | 8 | AY.44 | 0.000049 |
S | 163 | A163A | gcG | gcA | 8 | 8 | B.1.177.58 | 0.010652 |
S | 163 | A163S | Gcg | Tcg | 7 | 8 | B.1.617.2 | 0.000026 |
S | 163 | A163S | GcG | TcT | 1 | 8 | B.1.617.2 | 0.000004 |
S | 163 | A163A | gcG | gcT | 4 | 8 | P.1.15 | 0.000929 |
S | 163 | A163A | gcG | gcA | 4 | 8 | P.1.15 | 0.000929 |
S | 163 | A163V | gCg | gTg | 6 | 7 | AY.3 | 0.00006 |
S | 163 | A163V | gCG | gTA | 1 | 7 | AY.3 | 0.00001 |
S | 163 | A163S | Gcg | Tcg | 7 | 7 | AY.4 | 0.000011 |
S | 163 | A163V | gCg | gTg | 7 | 7 | AY.4.2 | 0.000152 |
S | 163 | A163A | gcG | gcT | 6 | 7 | AY.45 | 0.00073 |
S | 163 | A163A | gcG | gcC | 1 | 7 | AY.45 | 0.000122 |
S | 163 | A163A | gcG | gcT | 5 | 7 | AY.69 | 0.000933 |
S | 163 | A163A | gcG | gcA | 1 | 7 | AY.69 | 0.000187 |
S | 163 | A163A | gcG | gcC | 1 | 7 | AY.69 | 0.000187 |
S | 163 | A163S | Gcg | Tcg | 7 | 7 | B.1.1.63 | 0.002701 |
S | 163 | A163A | gcG | gcT | 6 | 7 | B.1.351 | 0.000178 |
S | 163 | A163A | gcG | gcA | 1 | 7 | B.1.351 | 0.00003 |
S | 163 | A163A | gcG | gcT | 7 | 7 | B.1.575 | 0.002124 |
S | 163 | A163del1 | Gcg | -cg | 3 | 6 | All | 0.000001 |
S | 163 | A163del1 | GCG | -NN | 1 | 6 | All | 0 |
S | 163 | A163del1 | gcG | gc- | 1 | 6 | All | 0 |
S | 163 | A163del1 | GcG | -cN | 1 | 6 | All | 0 |
S | 163 | A163A | gcG | gcT | 6 | 6 | AY.117 | 0.000507 |
S | 163 | A163A | gcG | gcT | 5 | 6 | AY.23 | 0.000349 |
S | 163 | A163A | gcG | gcC | 1 | 6 | AY.23 | 0.00007 |
S | 163 | A163V | gCg | gTg | 6 | 6 | AY.25 | 0.000036 |
S | 163 | A163V | gCg | gTg | 6 | 6 | AY.39 | 0.000148 |
S | 163 | A163del | GCG | --- | 6 | 6 | AY.4.5 | 0.000645 |
S | 163 | A163A | gcG | gcT | 5 | 6 | AY.99.2 | 0.000461 |
S | 163 | A163A | gcG | gcA | 1 | 6 | AY.99.2 | 0.000092 |
S | 163 | A163A | gcG | gcT | 6 | 6 | B.1.1.398 | 0.019355 |
S | 163 | A163V | gCg | gTg | 6 | 6 | B.1.1.458 | 0.25 |
S | 163 | A163A | gcG | gcT | 6 | 6 | B.1.243 | 0.000418 |
S | 163 | A163A | gcG | gcT | 5 | 6 | B.1.526 | 0.000118 |
S | 163 | A163A | gcG | gcA | 1 | 6 | B.1.526 | 0.000024 |
S | 163 | A163S | GCG | AGT | 2 | 5 | 0.111111 | |
S | 163 | A163S | Gcg | Tcg | 2 | 5 | 0.111111 | |
S | 163 | A163S | GcG | TcT | 1 | 5 | 0.055556 | |
S | 163 | A163P | Gcg | Ccg | 5 | 5 | All | 0.000001 |
S | 163 | A163V | gCg | gTg | 4 | 5 | AY.102 | 0.000106 |
S | 163 | A163V | gCG | gTA | 1 | 5 | AY.102 | 0.000027 |
S | 163 | A163V | gCg | gTg | 5 | 5 | AY.20 | 0.000194 |
S | 163 | A163V | gCg | gTg | 5 | 5 | AY.29 | 0.000079 |
S | 163 | A163A | gcG | gcT | 4 | 5 | AY.4.5 | 0.00043 |
S | 163 | A163A | gcG | gcC | 1 | 5 | AY.4.5 | 0.000107 |
S | 163 | A163A | gcG | gcT | 4 | 5 | AY.46.6 | 0.000289 |
S | 163 | A163A | gcG | gcA | 1 | 5 | AY.46.6 | 0.000072 |
S | 163 | A163del | GCG | --- | 5 | 5 | B.1.1 | 0.000091 |
S | 163 | A163A | gcG | gcT | 5 | 5 | B.1.1.311 | 0.001791 |
S | 163 | A163S | Gcg | Tcg | 5 | 5 | B.1.2 | 0.000044 |
S | 163 | A163T | Gcg | Acg | 5 | 5 | B.1.36.17 | 0.00247 |
S | 163 | A163A | gcG | gcA | 4 | 5 | B.1.36.29 | 0.002069 |
S | 163 | A163A | gcG | gcT | 1 | 5 | B.1.36.29 | 0.000517 |
S | 163 | A163A | gcG | gcT | 5 | 5 | B.1.397 | 0.024272 |
S | 163 | A163A | gcG | gcT | 5 | 5 | B.1.427 | 0.000252 |
S | 163 | A163A | gcG | gcT | 5 | 5 | B.1.568 | 0.005556 |
S | 163 | A163G | gCg | gGg | 2 | 4 | 0.111111 | |
S | 163 | A163G | gCG | gGT | 2 | 4 | 0.111111 | |
S | 163 | A163A | gcG | gcT | 4 | 4 | AY.100 | 0.000184 |
S | 163 | A163A | gcG | gcT | 2 | 4 | AY.102 | 0.000053 |
S | 163 | A163A | gcG | gcC | 1 | 4 | AY.102 | 0.000027 |
S | 163 | A163A | gcG | gcA | 1 | 4 | AY.102 | 0.000027 |
S | 163 | A163E | gCg | gAg | 4 | 4 | AY.119 | 0.000141 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.121 | 0.000406 |
S | 163 | A163A | gcG | gcC | 1 | 4 | AY.121 | 0.000135 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.14 | 0.000264 |
S | 163 | A163A | gcG | gcA | 1 | 4 | AY.14 | 0.000088 |
S | 163 | A163A | gcG | gcT | 4 | 4 | AY.16.1 | 0.00188 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.20 | 0.000117 |
S | 163 | A163A | gcG | gcA | 1 | 4 | AY.20 | 0.000039 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.29 | 0.000047 |
S | 163 | A163A | gcG | gcA | 1 | 4 | AY.29 | 0.000016 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.33 | 0.0002 |
S | 163 | A163A | gcG | gcC | 1 | 4 | AY.33 | 0.000067 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.98 | 0.000237 |
S | 163 | A163A | gcG | gcC | 1 | 4 | AY.98 | 0.000079 |
S | 163 | A163A | gcG | gcT | 4 | 4 | B.1.1.1 | 0.001307 |
S | 163 | A163A | gcG | gcT | 3 | 4 | B.1.1.28 | 0.000934 |
S | 163 | A163A | gcG | gcC | 1 | 4 | B.1.1.28 | 0.000311 |
S | 163 | A163A | gcG | gcC | 4 | 4 | B.1.1.305 | 0.015444 |
S | 163 | A163A | gcG | gcT | 4 | 4 | B.1.240 | 0.000862 |
S | 163 | A163del | GCG | --- | 4 | 4 | B.1.621 | 0.000354 |
S | 163 | A163A | gcG | gcT | 4 | 4 | B.1.625 | 0.009412 |
S | 163 | A163del | GCG | --- | 4 | 4 | C.37.1 | 0.010471 |
S | 163 | A163A | gcG | gcT | 3 | 3 | 0.166667 | |
S | 163 | A163S | Gcg | Tcg | 3 | 3 | A.2.5 | 0.001497 |
S | 163 | A163W | GCg | TGg | 3 | 3 | All | 0.000001 |
S | 163 | A163del2 | GCg | --g | 2 | 3 | All | 0 |
S | 163 | A163del2 | gCG | g-- | 1 | 3 | All | 0 |
S | 163 | A163S | Gcg | Tcg | 3 | 3 | AY.102 | 0.00008 |
S | 163 | A163A | gcG | gcC | 3 | 3 | AY.105 | 0.001929 |
S | 163 | A163V | gCg | gTg | 3 | 3 | AY.118 | 0.000188 |
S | 163 | A163A | gcG | gcT | 3 | 3 | AY.118 | 0.000188 |
S | 163 | A163S | Gcg | Tcg | 3 | 3 | AY.120 | 0.000112 |
S | 163 | A163V | gCg | gTg | 3 | 3 | AY.120 | 0.000112 |
S | 163 | A163del | GCG | --- | 3 | 3 | AY.3 | 0.00003 |
S | 163 | A163S | Gcg | Tcg | 3 | 3 | AY.35 | 0.000699 |
S | 163 | A163A | gcG | gcT | 3 | 3 | AY.38 | 0.001498 |
S | 163 | A163A | gcG | gcT | 3 | 3 | AY.39.1 | 0.000119 |
S | 163 | A163T | Gcg | Acg | 3 | 3 | AY.4 | 0.000005 |
S | 163 | A163A | gcG | gcT | 2 | 3 | AY.4.2 | 0.000043 |
S | 163 | A163A | gcG | gcA | 1 | 3 | AY.4.2 | 0.000022 |
S | 163 | A163V | gCg | gTg | 2 | 3 | AY.42 | 0.00008 |
S | 163 | A163V | gCG | gTA | 1 | 3 | AY.42 | 0.00004 |
S | 163 | A163A | gcG | gcT | 2 | 3 | AY.46 | 0.000208 |
S | 163 | A163A | gcG | gcC | 1 | 3 | AY.46 | 0.000104 |
S | 163 | A163A | gcG | gcC | 3 | 3 | AY.54 | 0.000286 |
S | 163 | A163E | gCg | gAg | 3 | 3 | AY.6 | 0.000123 |
S | 163 | A163A | gcG | gcT | 3 | 3 | AY.82 | 0.004071 |
S | 163 | A163V | gCg | gTg | 3 | 3 | AY.93 | 0.000819 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.1.176 | 0.001318 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.1.214 | 0.000166 |
S | 163 | A163V | gCg | gTg | 3 | 3 | B.1.1.28 | 0.000934 |
S | 163 | A163A | gcG | gcT | 2 | 3 | B.1.1.33 | 0.000842 |
S | 163 | A163A | gcG | gcC | 1 | 3 | B.1.1.33 | 0.000421 |
S | 163 | A163G | gCg | gGg | 3 | 3 | B.1.177 | 0.00004 |
S | 163 | A163V | gCg | gTg | 3 | 3 | B.1.177.75 | 0.003122 |
S | 163 | A163del | GCG | --- | 3 | 3 | B.1.2 | 0.000026 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.258 | 0.0002 |
S | 163 | A163V | gCg | gTg | 3 | 3 | B.1.318 | 0.115385 |
S | 163 | A163V | gCg | gTg | 3 | 3 | B.1.329 | 0.001823 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.351.2 | 0.000908 |
S | 163 | A163V | gCg | gTg | 3 | 3 | B.1.371 | 0.003367 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.389 | 0.003006 |
S | 163 | A163V | gCg | gTg | 3 | 3 | B.1.427 | 0.000151 |
S | 163 | A163V | gCg | gTg | 3 | 3 | B.1.617.1 | 0.000387 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.617.1 | 0.000387 |
S | 163 | A163A | gcG | gcC | 2 | 3 | B.1.628 | 0.000705 |
S | 163 | A163A | gcG | gcT | 1 | 3 | B.1.628 | 0.000352 |
S | 163 | A163S | Gcg | Tcg | 3 | 3 | B.1.637 | 0.000219 |
S | 163 | A163R | GCg | AGg | 2 | 2 | 0.111111 | |
S | 163 | A163C | GCG | TGC | 2 | 2 | All | 0 |
S | 163 | A163R | GCg | AGg | 2 | 2 | All | 0 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.1 | 0.000791 |
S | 163 | A163V | gCg | gTg | 2 | 2 | AY.100 | 0.000092 |
S | 163 | A163T | Gcg | Acg | 2 | 2 | AY.103 | 0.000012 |
S | 163 | A163A | gcG | gcC | 2 | 2 | AY.108 | 0.002205 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.110 | 0.000225 |
S | 163 | A163V | gCg | gTg | 2 | 2 | AY.113 | 0.000285 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.120.1 | 0.000642 |
S | 163 | A163E | gCg | gAg | 2 | 2 | AY.23 | 0.000139 |
S | 163 | A163del | GCG | --- | 2 | 2 | AY.23 | 0.000139 |
S | 163 | A163A | gcG | gcA | 2 | 2 | AY.24 | 0.000862 |
S | 163 | A163S | GcG | TcT | 2 | 2 | AY.24 | 0.000862 |
S | 163 | A163V | gCg | gTg | 2 | 2 | AY.26 | 0.000057 |
S | 163 | A163del | GCG | --- | 2 | 2 | AY.29 | 0.000032 |
S | 163 | A163P | Gcg | Ccg | 2 | 2 | AY.4 | 0.000003 |
S | 163 | A163V | gCg | gTg | 2 | 2 | AY.4.2.1 | 0.000298 |
S | 163 | A163V | gCg | gTg | 2 | 2 | AY.45 | 0.000243 |
S | 163 | A163T | Gcg | Acg | 2 | 2 | AY.46 | 0.000208 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.46.5 | 0.000397 |
S | 163 | A163del | GCG | --- | 2 | 2 | AY.5 | 0.000041 |
S | 163 | A163V | gCg | gTg | 2 | 2 | AY.5 | 0.000041 |
S | 163 | A163S | Gcg | Tcg | 2 | 2 | AY.5 | 0.000041 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.55 | 0.001835 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.61 | 0.00021 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.68 | 0.000547 |
S | 163 | A163V | gCg | gTg | 2 | 2 | AY.75 | 0.000112 |
S | 163 | A163V | gCg | gTg | 2 | 2 | AY.9.1 | 0.000167 |
S | 163 | A163A | gcG | gcC | 1 | 2 | AY.9.1 | 0.000084 |
S | 163 | A163A | gcG | gcT | 1 | 2 | AY.9.1 | 0.000084 |
S | 163 | A163del | GCG | --- | 2 | 2 | AY.98.1 | 0.000097 |
S | 163 | A163A | gcG | gcC | 2 | 2 | AY.99 | 0.002099 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B | 0.000256 |
S | 163 | A163G | gCg | gGg | 1 | 2 | B.1 | 0.000009 |
S | 163 | A163G | gCG | gGC | 1 | 2 | B.1 | 0.000009 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.1 | 0.000036 |
S | 163 | A163G | gCg | gGg | 1 | 2 | B.1.1 | 0.000018 |
S | 163 | A163G | gCG | gGC | 1 | 2 | B.1.1 | 0.000018 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.1.222 | 0.000408 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.1.284 | 0.000215 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.1.306 | 0.000877 |
S | 163 | A163del | GCG | --- | 2 | 2 | B.1.1.315 | 0.016949 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.1.37 | 0.000386 |
S | 163 | A163T | Gcg | Acg | 2 | 2 | B.1.1.413 | 0.013793 |
S | 163 | A163A | gcG | gcA | 2 | 2 | B.1.1.57 | 0.022989 |
S | 163 | A163E | gCg | gAg | 2 | 2 | B.1.1.7 | 0.000002 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.139 | 0.001466 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.2 | 0.009091 |
S | 163 | A163E | gCg | gAg | 2 | 2 | B.1.177.23 | 0.006472 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.177.4 | 0.000422 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.54 | 0.001213 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.56 | 0.001335 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.65 | 0.001331 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.7 | 0.00033 |
S | 163 | A163A | gcG | gcA | 2 | 2 | B.1.234 | 0.000264 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.239 | 0.002442 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.258 | 0.000133 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.264 | 0.024691 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.351 | 0.000059 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.36.8 | 0.002 |
S | 163 | A163S | Gcg | Tcg | 2 | 2 | B.1.429 | 0.000047 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.466.2 | 0.000782 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.471 | 0.005464 |
S | 163 | A163del | GCG | --- | 2 | 2 | B.1.596 | 0.000174 |
S | 163 | A163del1 | Gcg | -cg | 2 | 2 | B.1.617.2 | 0.000008 |
S | 163 | A163T | Gcg | Acg | 2 | 2 | B.1.617.2 | 0.000008 |
S | 163 | A163A | gcG | gcC | 2 | 2 | B.1.621 | 0.000177 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.628 | 0.000705 |
S | 163 | A163V | gCg | gTg | 2 | 2 | B.1.637 | 0.000146 |
S | 163 | A163V | gCG | gTT | 1 | 2 | B.1.83 | 0.015385 |
S | 163 | A163V | gCg | gTg | 1 | 2 | B.1.83 | 0.015385 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.40 | 0.000729 |
S | 163 | A163V | gCg | gTg | 2 | 2 | P.1 | 0.000032 |
S | 163 | A163A | gcG | gcT | 2 | 2 | P.1.1 | 0.000635 |
S | 163 | A163del | GCG | --- | 2 | 2 | P.1.7 | 0.000639 |
S | 163 | A163A | gcG | gcC | 1 | 2 | P.1.7 | 0.000319 |
S | 163 | A163A | gcG | gcT | 1 | 2 | P.1.7 | 0.000319 |
S | 163 | A163L | GCg | TTg | 1 | 1 | 0.055556 | |
S | 163 | A163V | gCg | gTg | 1 | 1 | 0.055556 | |
S | 163 | A163del | GCG | --- | 1 | 1 | A | 0.000387 |
S | 163 | A163A | gcG | gcA | 1 | 1 | A | 0.000387 |
S | 163 | A163del | GCG | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 163 | A163del | GCG | --- | 1 | 1 | A.2.5 | 0.000499 |
S | 163 | A163E | gCg | gAg | 1 | 1 | A.2.5.2 | 0.001572 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AD.2 | 0.000219 |
S | 163 | A163Q | GCg | CAg | 1 | 1 | All | 0 |
S | 163 | A163M | GCg | ATg | 1 | 1 | All | 0 |
S | 163 | A163K | GCg | AAg | 1 | 1 | All | 0 |
S | 163 | A163I | GCG | ATT | 1 | 1 | All | 0 |
S | 163 | A163L | GCg | TTg | 1 | 1 | All | 0 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.100 | 0.000046 |
S | 163 | A163A | gcG | gcA | 1 | 1 | AY.101 | 0.00049 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.102 | 0.000027 |
S | 163 | A163del1 | gcG | gc- | 1 | 1 | AY.103 | 0.000006 |
S | 163 | A163E | gCg | gAg | 1 | 1 | AY.103 | 0.000006 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.103 | 0.000006 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.104 | 0.001984 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.106 | 0.000335 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.106 | 0.000335 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.108 | 0.001103 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.113 | 0.000142 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.116 | 0.000287 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.117 | 0.000085 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | AY.117 | 0.000085 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.118 | 0.000063 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.12 | 0.000316 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.120 | 0.000037 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.121 | 0.000135 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.14 | 0.000088 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.16 | 0.00038 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.19 | 0.00114 |
S | 163 | A163E | gCg | gAg | 1 | 1 | AY.19 | 0.00114 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.23 | 0.00007 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.23 | 0.00007 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.23.1 | 0.000417 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.24 | 0.000431 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.25 | 0.000006 |
S | 163 | A163del2 | gCG | g-- | 1 | 1 | AY.25 | 0.000006 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | AY.25 | 0.000006 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.28 | 0.00189 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.29 | 0.000016 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.3 | 0.00001 |
S | 163 | A163A | gcG | gcA | 1 | 1 | AY.3.1 | 0.000085 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.30 | 0.000396 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.30 | 0.000396 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.33 | 0.000067 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.33 | 0.000067 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | AY.34 | 0.000097 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.37 | 0.000316 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.39 | 0.000025 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.39 | 0.000025 |
S | 163 | A163Q | GCg | CAg | 1 | 1 | AY.4 | 0.000002 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.4.3 | 0.000842 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.4.4 | 0.000409 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | AY.4.5 | 0.000107 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.41 | 0.000294 |
S | 163 | A163E | gCg | gAg | 1 | 1 | AY.43 | 0.000004 |
S | 163 | A163P | Gcg | Ccg | 1 | 1 | AY.43 | 0.000004 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | AY.44 | 0.000006 |
S | 163 | A163K | GCg | AAg | 1 | 1 | AY.44 | 0.000006 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.46.2 | 0.000635 |
S | 163 | A163G | gCg | gGg | 1 | 1 | AY.46.4 | 0.000165 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | AY.46.6 | 0.000072 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.46.6 | 0.000072 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.47 | 0.000031 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.48 | 0.000465 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.48 | 0.000465 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.5.3 | 0.000337 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.5.3 | 0.000337 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.52 | 0.000814 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.54 | 0.000095 |
S | 163 | A163E | gCg | gAg | 1 | 1 | AY.54 | 0.000095 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.60 | 0.000938 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.60 | 0.000938 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.61 | 0.000105 |
S | 163 | A163T | GcG | AcC | 1 | 1 | AY.62 | 0.000436 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.62 | 0.000436 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.65 | 0.000533 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.69 | 0.000187 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.7 | 0.000196 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.7.2 | 0.000559 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.70 | 0.000209 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.71 | 0.000475 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.74 | 0.000116 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.75.1 | 0.00018 |
S | 163 | A163A | gcG | gcA | 1 | 1 | AY.8 | 0.000606 |
S | 163 | A163E | gCg | gAg | 1 | 1 | AY.84 | 0.000437 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.84 | 0.000437 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.85 | 0.000427 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.86 | 0.00083 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.88 | 0.000884 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.89 | 0.004902 |
S | 163 | A163del1 | GCG | -NN | 1 | 1 | AY.9 | 0.000068 |
S | 163 | A163del | GCG | --- | 1 | 1 | AY.9 | 0.000068 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.9 | 0.000068 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.9.2 | 0.000037 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.94 | 0.000443 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.95 | 0.000761 |
S | 163 | A163V | gCg | gTg | 1 | 1 | AY.98 | 0.000079 |
S | 163 | A163E | gCg | gAg | 1 | 1 | AY.98.1 | 0.000048 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | AY.99.1 | 0.001553 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | AY.99.2 | 0.000092 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | AZ.1 | 0.000867 |
S | 163 | A163del | GCG | --- | 1 | 1 | AZ.2 | 0.000821 |
S | 163 | A163del | GCG | --- | 1 | 1 | AZ.5 | 0.003509 |
S | 163 | A163del | GCG | --- | 1 | 1 | B | 0.000128 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | B.1 | 0.000009 |
S | 163 | A163C | GCG | TGC | 1 | 1 | B.1 | 0.000009 |
S | 163 | A163W | GCg | TGg | 1 | 1 | B.1 | 0.000009 |
S | 163 | A163W | GCg | TGg | 1 | 1 | B.1.1 | 0.000018 |
S | 163 | A163M | GCg | ATg | 1 | 1 | B.1.1 | 0.000018 |
S | 163 | A163C | GCG | TGC | 1 | 1 | B.1.1 | 0.000018 |
S | 163 | A163P | Gcg | Ccg | 1 | 1 | B.1.1 | 0.000018 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | B.1.1 | 0.000018 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.1.117 | 0.009709 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.1.139 | 0.022727 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.1.153 | 0.001095 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.222 | 0.000204 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.263 | 0.001558 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.1.284 | 0.000107 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.1.289 | 0.002083 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.1.337 | 0.003597 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.375 | 0.011905 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.1.397 | 0.002252 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.1.448 | 0.002033 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.1.459 | 0.015385 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.1.48 | 0.002874 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.486 | 0.001577 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.1.519 | 0.00004 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.1.519 | 0.00004 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.521 | 0.005348 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 163 | A163del2 | GCg | --g | 1 | 1 | B.1.1.7 | 0.000001 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.70 | 0.000341 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.1.70 | 0.000341 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.97 | 0.029412 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.115 | 0.021739 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.140 | 0.018868 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.147 | 0.000756 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.160 | 0.000031 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.160.32 | 0.004292 |
S | 163 | A163E | gCg | gAg | 1 | 1 | B.1.177 | 0.000013 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.177 | 0.000013 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | B.1.177 | 0.000013 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.177 | 0.000013 |
S | 163 | A163W | GCg | TGg | 1 | 1 | B.1.177 | 0.000013 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.12 | 0.000152 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.16 | 0.000664 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.21 | 0.000076 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.4 | 0.000211 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.177.6 | 0.000977 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.6 | 0.000977 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.86 | 0.000183 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.177.87 | 0.000728 |
S | 163 | A163P | Gcg | Ccg | 1 | 1 | B.1.2 | 0.000009 |
S | 163 | A163E | gCg | gAg | 1 | 1 | B.1.2 | 0.000009 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | B.1.2 | 0.000009 |
S | 163 | A163del2 | GCg | --g | 1 | 1 | B.1.2 | 0.000009 |
S | 163 | A163del1 | Gcg | -cg | 1 | 1 | B.1.2 | 0.000009 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.212 | 0.016667 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.214 | 0.003663 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.234 | 0.000132 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.241 | 0.000812 |
S | 163 | A163A | gcG | gcA | 1 | 1 | B.1.260 | 0.003344 |
S | 163 | A163I | GCG | ATT | 1 | 1 | B.1.260 | 0.003344 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.260 | 0.003344 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.333 | 0.010526 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.351 | 0.00003 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.351.2 | 0.000303 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.36 | 0.000146 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.36.24 | 0.006173 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.367 | 0.000792 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.367 | 0.000792 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.369 | 0.000285 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.381 | 0.007812 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.404 | 0.001302 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.413 | 0.004255 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.415 | 0.014286 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.429 | 0.000024 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.459 | 0.004082 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.468 | 0.005714 |
S | 163 | A163A | gcG | gcA | 1 | 1 | B.1.469 | 0.00361 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.470 | 0.001404 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.525 | 0.000113 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.526 | 0.000024 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.561 | 0.000397 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.574 | 0.002151 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | B.1.577 | 0.000687 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.596 | 0.000087 |
S | 163 | A163E | gCg | gAg | 1 | 1 | B.1.596 | 0.000087 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.612 | 0.002653 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.617.3 | 0.002985 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 163 | A163del1 | GcG | -cN | 1 | 1 | B.1.621 | 0.000089 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.621.1 | 0.000506 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | B.1.628 | 0.000352 |
S | 163 | A163A | gcG | gcC | 1 | 1 | B.1.630 | 0.005236 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.1.638 | 0.052632 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.1.78 | 0.008547 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.83 | 0.015385 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.3 | 0.000831 |
S | 163 | A163del | GCG | --- | 1 | 1 | B.34 | 0.013699 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.35 | 0.007812 |
S | 163 | A163A | gcG | gcA | 1 | 1 | B.6 | 0.00091 |
S | 163 | A163V | gCg | gTg | 1 | 1 | B.6.6 | 0.000889 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.6.6 | 0.000889 |
S | 163 | A163V | gCg | gTg | 1 | 1 | C.16 | 0.00106 |
S | 163 | A163T | Gcg | Acg | 1 | 1 | C.37 | 0.000116 |
S | 163 | A163A | gcG | gcT | 1 | 1 | D.2 | 0.000075 |
S | 163 | A163A | gcG | gcT | 1 | 1 | N.1 | 0.016949 |
S | 163 | A163V | gCg | gTg | 1 | 1 | P.1.1 | 0.000318 |
S | 163 | A163del | GCG | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 163 | A163S | Gcg | Tcg | 1 | 1 | P.2 | 0.000187 |
S | 163 | A163A | gcG | gcT | 1 | 1 | Q.3 | 0.000145 |
S | 163 | A163V | gCg | gTg | 1 | 1 | Q.8 | 0.000165 |
S | 163 | A163A | gcG | gcT | 1 | 1 | Z.1 | 0.00289 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|