CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 163

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S163A163AsyngcGgcC19456147060.75585922049-22051
S163A163AsyngcGgcT1945645960.23622522049-22051
S163A163AsyngcGgcA194561540.007915322049-22051
S163A163VnonsyngCggTg8498410.99057722049-22051
S163A163VnonsyngCGgTA84960.0070671422049-22051
S163A163VnonsyngCGgTT84910.0011778622049-22051
S163A163VnonsyngCGgTC84910.0011778622049-22051
S163A163deldelGCG---264264122049-22051
S163A163SnonsynGcgTcg2132040.95774722049-22051
S163A163SnonsynGcGTcT21350.023474222049-22051
S163A163SnonsynGCGAGT21320.0093896722049-22051
S163A163SnonsynGcGTcC21320.0093896722049-22051
S163A163EnonsyngCggAg5858122049-22051
S163A163TnonsynGcgAcg48440.91666722049-22051
S163A163TnonsynGcGAcT4830.062522049-22051
S163A163TnonsynGcGAcC4810.020833322049-22051
S163A163GnonsyngCggGg1280.66666722049-22051
S163A163GnonsyngCGgGC1220.16666722049-22051
S163A163GnonsyngCGgGT1220.16666722049-22051
S163A163del1delGcg-cg630.522049-22051
S163A163del1delgcGgc-610.16666722049-22051
S163A163del1delGcG-cN610.16666722049-22051
S163A163del1delGCG-NN610.16666722049-22051
S163A163PnonsynGcgCcg55122049-22051
S163A163WnonsynGCgTGg33122049-22051
S163A163del2delGCg--g320.66666722049-22051
S163A163del2delgCGg--310.33333322049-22051
S163A163RnonsynGCgAGg22122049-22051
S163A163CnonsynGCGTGC22122049-22051
S163A163InonsynGCGATT11122049-22051
S163A163QnonsynGCgCAg11122049-22051
S163A163LnonsynGCgTTg11122049-22051
S163A163KnonsynGCgAAg11122049-22051
S163A163MnonsynGCgATg11122049-22051

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S163A163AgcGgcC1470619456All0.002813
S163A163AgcGgcT459619456All0.000879
S163A163AgcGgcA15419456All0.000029
S163A163AgcGgcC1420214387AY.40.022104
S163A163AgcGgcT18214387AY.40.000283
S163A163AgcGgcA314387AY.40.000005
S163A163AgcGgcT15201520B.1.177.150.958991
S163A163VgCggTg841849All0.000161
S163A163VgCGgTA6849All0.000001
S163A163VgCGgTT1849All0
S163A163VgCGgTC1849All0
S163A163AgcGgcT497570B.1.1.70.000445
S163A163AgcGgcA43570B.1.1.70.000038
S163A163AgcGgcC30570B.1.1.70.000027
S163A163AgcGgcT182371B.1.617.20.000685
S163A163AgcGgcC175371B.1.617.20.000659
S163A163AgcGgcA14371B.1.617.20.000053
S163A163VgCggTg294294B.1.2430.020458
S163A163AgcGgcT288288AY.630.111412
S163A163delGCG---264264All0.00005
S163A163SGcgTcg204213All0.000039
S163A163SGcGTcT5213All0.000001
S163A163SGCGAGT2213All0
S163A163SGcGTcC2213All0
S163A163AgcGgcT130139B.1.1770.001712
S163A163AgcGgcA9139B.1.1770.000119
S163A163AgcGgcT138138AA.11
S163A163AgcGgcT67136AY.430.000297
S163A163AgcGgcC63136AY.430.000279
S163A163AgcGgcA6136AY.430.000027
S163A163AgcGgcT130130AA.21
S163A163VgCggTg119120AY.40.000185
S163A163VgCGgTC1120AY.40.000002
S163A163AgcGgcT110110AA.41
S163A163AgcGgcT109109AA.71
S163A163AgcGgcC6996AY.390.001705
S163A163AgcGgcT2696AY.390.000642
S163A163AgcGgcA196AY.390.000025
S163A163VgCggTg8888B.1.1.70.000079
S163A163AgcGgcT4481AY.470.001369
S163A163AgcGgcC3781AY.470.001151
S163A163AgcGgcT7474AY.1140.017102
S163A163SGcgTcg6566B.1.10.001179
S163A163SGcGTcC166B.1.10.000018
S163A163AgcGgcT6262AA.51
S163A163AgcGgcT6262AA.61
S163A163EgCggAg5858All0.000011
S163A163AgcGgcT4453B.10.000403
S163A163AgcGgcA753B.10.000064
S163A163AgcGgcC253B.10.000018
S163A163AgcGgcT4949P.1.140.002342
S163A163TGcgAcg4448All0.000008
S163A163TGcGAcT348All0.000001
S163A163TGcGAcC148All0
S163A163AgcGgcT4545AA.81
S163A163AgcGgcT3140AY.30.000308
S163A163AgcGgcC840AY.30.00008
S163A163AgcGgcA140AY.30.00001
S163A163AgcGgcT3940AY.7.10.004395
S163A163AgcGgcA140AY.7.10.000113
S163A163AgcGgcT3439AY.440.000207
S163A163AgcGgcC339AY.440.000018
S163A163AgcGgcA239AY.440.000012
S163A163AgcGgcC3939AY.530.011213
S163A163SGcgTcg3838B.1.1.70.000034
S163A163AgcGgcT3737AA.31
S163A163AgcGgcT2937P.10.000457
S163A163AgcGgcA637P.10.000095
S163A163AgcGgcC237P.10.000032
S163A163EgCggAg3535AY.140.00308
S163A163delGCG---3232B.1.1.70.000029
S163A163AgcGgcT3031AY.50.000619
S163A163AgcGgcC131AY.50.000021
S163A163AgcGgcT2929AY.250.000174
S163A163delGCG---2929C.370.003366
S163A163AgcGgcT2727AY.98.10.001308
S163A163AgcGgcT2427B.1.20.000211
S163A163AgcGgcC227B.1.20.000018
S163A163AgcGgcA127B.1.20.000009
S163A163AgcGgcT2626AY.870.021649
S163A163AgcGgcT2224B.1.10.000399
S163A163AgcGgcC224B.1.10.000036
S163A163AgcGgcT2424B.1.1.5190.000953
S163A163VgCggTg2424B.1.617.20.00009
S163A163VgCggTg2323Q.70.025556
S163A163AgcGgcT1922AY.1030.000118
S163A163AgcGgcA222AY.1030.000012
S163A163AgcGgcC122AY.1030.000006
S163A163delGCG---2222AY.430.000097
S163A163SGcgTcg2122AY.430.000093
S163A163SGcGTcT122AY.430.000004
S163A163VgCggTg2222B.1.36.160.031339
S163A163delGCG---2121P.1.150.004879
S163A163AgcGgcT1820B.1.360.002626
S163A163AgcGgcA220B.1.360.000292
S163A163VgCggTg1818AY.440.00011
S163A163AgcGgcT1118B.1.1600.000343
S163A163AgcGgcC618B.1.1600.000187
S163A163AgcGgcA118B.1.1600.000031
S163A163AgcGgcT1617AY.1200.000595
S163A163AgcGgcC117AY.1200.000037
S163A163VgCggTg1717AY.340.001648
S163A163AgcGgcC917AY.420.000362
S163A163AgcGgcT717AY.420.000282
S163A163AgcGgcA117AY.420.00004
S163A163AgcGgcT1616AY.5.40.004427
S163A163delGCG---1616P.10.000252
S163A163AgcGgcT1215AY.60.000494
S163A163AgcGgcC215AY.60.000082
S163A163AgcGgcA115AY.60.000041
S163A163AgcGgcT1015AY.9.20.000367
S163A163AgcGgcA315AY.9.20.00011
S163A163AgcGgcC215AY.9.20.000073
S163A163AgcGgcT1515B.1.1.250.008528
S163A163AgcGgcT1414AY.90.000946
S163A163VgCggTg1414B.1.5260.000329
S163A163AgcGgcC1013B.1.177.810.001893
S163A163AgcGgcT213B.1.177.810.000379
S163A163AgcGgcA113B.1.177.810.000189
S163A163VgCggTg1313B.1.20.000114
S163A163AgcGgcT813B.1.4290.000188
S163A163AgcGgcA513B.1.4290.000118
S163A163GgCggGg812All0.000002
S163A163GgCGgGT212All0
S163A163GgCGgGC212All0
S163A163delGCG---1111AY.250.000066
S163A163VgCggTg1111B.10.000101
S163A163VgCggTg1111B.1.5250.001245
S163A163VgCggTg1111B.1.5700.032353
S163A163AgcGgcT1111C.370.001277
S163A163AgcGgcT910AY.260.000255
S163A163AgcGgcC110AY.260.000028
S163A163VgCggTg810AY.430.000035
S163A163VgCGgTA210AY.430.000009
S163A163delGCG---1010B.10.000092
S163A163delGCG---1010B.1.1770.000132
S163A163AgcGgcT910B.1.2210.000639
S163A163AgcGgcC110B.1.2210.000071
S163A163AgcGgcA510P.20.000933
S163A163AgcGgcT510P.20.000933
S163A163delGCG---99AY.40.000014
S163A163SGcgTcg89B.10.000073
S163A163SGcGTcC19B.10.000009
S163A163TGcgAcg99B.1.1.70.000008
S163A163AgcGgcT99B.1.2100.01919
S163A163delGCG---99B.1.617.20.000034
S163A163TGcgAcg580.277778
S163A163TGcGAcT380.166667
S163A163VgCggTg88AY.100.00424
S163A163VgCggTg78AY.1030.000043
S163A163VgCGgTA18AY.1030.000006
S163A163AgcGgcT88AY.1190.000282
S163A163AgcGgcT88AY.340.000776
S163A163delGCG---88AY.440.000049
S163A163AgcGgcA88B.1.177.580.010652
S163A163SGcgTcg78B.1.617.20.000026
S163A163SGcGTcT18B.1.617.20.000004
S163A163AgcGgcT48P.1.150.000929
S163A163AgcGgcA48P.1.150.000929
S163A163VgCggTg67AY.30.00006
S163A163VgCGgTA17AY.30.00001
S163A163SGcgTcg77AY.40.000011
S163A163VgCggTg77AY.4.20.000152
S163A163AgcGgcT67AY.450.00073
S163A163AgcGgcC17AY.450.000122
S163A163AgcGgcT57AY.690.000933
S163A163AgcGgcA17AY.690.000187
S163A163AgcGgcC17AY.690.000187
S163A163SGcgTcg77B.1.1.630.002701
S163A163AgcGgcT67B.1.3510.000178
S163A163AgcGgcA17B.1.3510.00003
S163A163AgcGgcT77B.1.5750.002124
S163A163del1Gcg-cg36All0.000001
S163A163del1GCG-NN16All0
S163A163del1gcGgc-16All0
S163A163del1GcG-cN16All0
S163A163AgcGgcT66AY.1170.000507
S163A163AgcGgcT56AY.230.000349
S163A163AgcGgcC16AY.230.00007
S163A163VgCggTg66AY.250.000036
S163A163VgCggTg66AY.390.000148
S163A163delGCG---66AY.4.50.000645
S163A163AgcGgcT56AY.99.20.000461
S163A163AgcGgcA16AY.99.20.000092
S163A163AgcGgcT66B.1.1.3980.019355
S163A163VgCggTg66B.1.1.4580.25
S163A163AgcGgcT66B.1.2430.000418
S163A163AgcGgcT56B.1.5260.000118
S163A163AgcGgcA16B.1.5260.000024
S163A163SGCGAGT250.111111
S163A163SGcgTcg250.111111
S163A163SGcGTcT150.055556
S163A163PGcgCcg55All0.000001
S163A163VgCggTg45AY.1020.000106
S163A163VgCGgTA15AY.1020.000027
S163A163VgCggTg55AY.200.000194
S163A163VgCggTg55AY.290.000079
S163A163AgcGgcT45AY.4.50.00043
S163A163AgcGgcC15AY.4.50.000107
S163A163AgcGgcT45AY.46.60.000289
S163A163AgcGgcA15AY.46.60.000072
S163A163delGCG---55B.1.10.000091
S163A163AgcGgcT55B.1.1.3110.001791
S163A163SGcgTcg55B.1.20.000044
S163A163TGcgAcg55B.1.36.170.00247
S163A163AgcGgcA45B.1.36.290.002069
S163A163AgcGgcT15B.1.36.290.000517
S163A163AgcGgcT55B.1.3970.024272
S163A163AgcGgcT55B.1.4270.000252
S163A163AgcGgcT55B.1.5680.005556
S163A163GgCggGg240.111111
S163A163GgCGgGT240.111111
S163A163AgcGgcT44AY.1000.000184
S163A163AgcGgcT24AY.1020.000053
S163A163AgcGgcC14AY.1020.000027
S163A163AgcGgcA14AY.1020.000027
S163A163EgCggAg44AY.1190.000141
S163A163AgcGgcT34AY.1210.000406
S163A163AgcGgcC14AY.1210.000135
S163A163AgcGgcT34AY.140.000264
S163A163AgcGgcA14AY.140.000088
S163A163AgcGgcT44AY.16.10.00188
S163A163AgcGgcT34AY.200.000117
S163A163AgcGgcA14AY.200.000039
S163A163AgcGgcT34AY.290.000047
S163A163AgcGgcA14AY.290.000016
S163A163AgcGgcT34AY.330.0002
S163A163AgcGgcC14AY.330.000067
S163A163AgcGgcT34AY.980.000237
S163A163AgcGgcC14AY.980.000079
S163A163AgcGgcT44B.1.1.10.001307
S163A163AgcGgcT34B.1.1.280.000934
S163A163AgcGgcC14B.1.1.280.000311
S163A163AgcGgcC44B.1.1.3050.015444
S163A163AgcGgcT44B.1.2400.000862
S163A163delGCG---44B.1.6210.000354
S163A163AgcGgcT44B.1.6250.009412
S163A163delGCG---44C.37.10.010471
S163A163AgcGgcT330.166667
S163A163SGcgTcg33A.2.50.001497
S163A163WGCgTGg33All0.000001
S163A163del2GCg--g23All0
S163A163del2gCGg--13All0
S163A163SGcgTcg33AY.1020.00008
S163A163AgcGgcC33AY.1050.001929
S163A163VgCggTg33AY.1180.000188
S163A163AgcGgcT33AY.1180.000188
S163A163SGcgTcg33AY.1200.000112
S163A163VgCggTg33AY.1200.000112
S163A163delGCG---33AY.30.00003
S163A163SGcgTcg33AY.350.000699
S163A163AgcGgcT33AY.380.001498
S163A163AgcGgcT33AY.39.10.000119
S163A163TGcgAcg33AY.40.000005
S163A163AgcGgcT23AY.4.20.000043
S163A163AgcGgcA13AY.4.20.000022
S163A163VgCggTg23AY.420.00008
S163A163VgCGgTA13AY.420.00004
S163A163AgcGgcT23AY.460.000208
S163A163AgcGgcC13AY.460.000104
S163A163AgcGgcC33AY.540.000286
S163A163EgCggAg33AY.60.000123
S163A163AgcGgcT33AY.820.004071
S163A163VgCggTg33AY.930.000819
S163A163AgcGgcT33B.1.1.1760.001318
S163A163AgcGgcT33B.1.1.2140.000166
S163A163VgCggTg33B.1.1.280.000934
S163A163AgcGgcT23B.1.1.330.000842
S163A163AgcGgcC13B.1.1.330.000421
S163A163GgCggGg33B.1.1770.00004
S163A163VgCggTg33B.1.177.750.003122
S163A163delGCG---33B.1.20.000026
S163A163AgcGgcT33B.1.2580.0002
S163A163VgCggTg33B.1.3180.115385
S163A163VgCggTg33B.1.3290.001823
S163A163AgcGgcT33B.1.351.20.000908
S163A163VgCggTg33B.1.3710.003367
S163A163AgcGgcT33B.1.3890.003006
S163A163VgCggTg33B.1.4270.000151
S163A163VgCggTg33B.1.617.10.000387
S163A163AgcGgcT33B.1.617.10.000387
S163A163AgcGgcC23B.1.6280.000705
S163A163AgcGgcT13B.1.6280.000352
S163A163SGcgTcg33B.1.6370.000219
S163A163RGCgAGg220.111111
S163A163CGCGTGC22All0
S163A163RGCgAGg22All0
S163A163AgcGgcT22AY.10.000791
S163A163VgCggTg22AY.1000.000092
S163A163TGcgAcg22AY.1030.000012
S163A163AgcGgcC22AY.1080.002205
S163A163AgcGgcT22AY.1100.000225
S163A163VgCggTg22AY.1130.000285
S163A163AgcGgcT22AY.120.10.000642
S163A163EgCggAg22AY.230.000139
S163A163delGCG---22AY.230.000139
S163A163AgcGgcA22AY.240.000862
S163A163SGcGTcT22AY.240.000862
S163A163VgCggTg22AY.260.000057
S163A163delGCG---22AY.290.000032
S163A163PGcgCcg22AY.40.000003
S163A163VgCggTg22AY.4.2.10.000298
S163A163VgCggTg22AY.450.000243
S163A163TGcgAcg22AY.460.000208
S163A163AgcGgcT22AY.46.50.000397
S163A163delGCG---22AY.50.000041
S163A163VgCggTg22AY.50.000041
S163A163SGcgTcg22AY.50.000041
S163A163AgcGgcT22AY.550.001835
S163A163AgcGgcT22AY.610.00021
S163A163AgcGgcT22AY.680.000547
S163A163VgCggTg22AY.750.000112
S163A163VgCggTg22AY.9.10.000167
S163A163AgcGgcC12AY.9.10.000084
S163A163AgcGgcT12AY.9.10.000084
S163A163delGCG---22AY.98.10.000097
S163A163AgcGgcC22AY.990.002099
S163A163AgcGgcT22B0.000256
S163A163GgCggGg12B.10.000009
S163A163GgCGgGC12B.10.000009
S163A163VgCggTg22B.1.10.000036
S163A163GgCggGg12B.1.10.000018
S163A163GgCGgGC12B.1.10.000018
S163A163VgCggTg22B.1.1.2220.000408
S163A163VgCggTg22B.1.1.2840.000215
S163A163AgcGgcT22B.1.1.3060.000877
S163A163delGCG---22B.1.1.3150.016949
S163A163VgCggTg22B.1.1.370.000386
S163A163TGcgAcg22B.1.1.4130.013793
S163A163AgcGgcA22B.1.1.570.022989
S163A163EgCggAg22B.1.1.70.000002
S163A163AgcGgcT22B.1.1390.001466
S163A163AgcGgcT22B.1.177.20.009091
S163A163EgCggAg22B.1.177.230.006472
S163A163VgCggTg22B.1.177.40.000422
S163A163AgcGgcT22B.1.177.540.001213
S163A163AgcGgcT22B.1.177.560.001335
S163A163AgcGgcT22B.1.177.650.001331
S163A163AgcGgcT22B.1.177.70.00033
S163A163AgcGgcA22B.1.2340.000264
S163A163AgcGgcT22B.1.2390.002442
S163A163VgCggTg22B.1.2580.000133
S163A163VgCggTg22B.1.2640.024691
S163A163VgCggTg22B.1.3510.000059
S163A163AgcGgcT22B.1.36.80.002
S163A163SGcgTcg22B.1.4290.000047
S163A163AgcGgcT22B.1.466.20.000782
S163A163AgcGgcT22B.1.4710.005464
S163A163delGCG---22B.1.5960.000174
S163A163del1Gcg-cg22B.1.617.20.000008
S163A163TGcgAcg22B.1.617.20.000008
S163A163AgcGgcC22B.1.6210.000177
S163A163VgCggTg22B.1.6280.000705
S163A163VgCggTg22B.1.6370.000146
S163A163VgCGgTT12B.1.830.015385
S163A163VgCggTg12B.1.830.015385
S163A163AgcGgcT22B.400.000729
S163A163VgCggTg22P.10.000032
S163A163AgcGgcT22P.1.10.000635
S163A163delGCG---22P.1.70.000639
S163A163AgcGgcC12P.1.70.000319
S163A163AgcGgcT12P.1.70.000319
S163A163LGCgTTg110.055556
S163A163VgCggTg110.055556
S163A163delGCG---11A0.000387
S163A163AgcGgcA11A0.000387
S163A163delGCG---11A.2.40.003367
S163A163delGCG---11A.2.50.000499
S163A163EgCggAg11A.2.5.20.001572
S163A163AgcGgcT11AD.20.000219
S163A163QGCgCAg11All0
S163A163MGCgATg11All0
S163A163KGCgAAg11All0
S163A163IGCGATT11All0
S163A163LGCgTTg11All0
S163A163delGCG---11AY.1000.000046
S163A163AgcGgcA11AY.1010.00049
S163A163delGCG---11AY.1020.000027
S163A163del1gcGgc-11AY.1030.000006
S163A163EgCggAg11AY.1030.000006
S163A163SGcgTcg11AY.1030.000006
S163A163AgcGgcT11AY.1040.001984
S163A163VgCggTg11AY.1060.000335
S163A163AgcGgcT11AY.1060.000335
S163A163VgCggTg11AY.1080.001103
S163A163AgcGgcC11AY.1130.000142
S163A163VgCggTg11AY.1160.000287
S163A163SGcgTcg11AY.1170.000085
S163A163TGcgAcg11AY.1170.000085
S163A163delGCG---11AY.1180.000063
S163A163AgcGgcT11AY.120.000316
S163A163delGCG---11AY.1200.000037
S163A163delGCG---11AY.1210.000135
S163A163SGcgTcg11AY.140.000088
S163A163AgcGgcT11AY.160.00038
S163A163AgcGgcT11AY.190.00114
S163A163EgCggAg11AY.190.00114
S163A163SGcgTcg11AY.230.00007
S163A163VgCggTg11AY.230.00007
S163A163AgcGgcC11AY.23.10.000417
S163A163delGCG---11AY.240.000431
S163A163SGcgTcg11AY.250.000006
S163A163del2gCGg--11AY.250.000006
S163A163TGcgAcg11AY.250.000006
S163A163AgcGgcT11AY.280.00189
S163A163SGcgTcg11AY.290.000016
S163A163SGcgTcg11AY.30.00001
S163A163AgcGgcA11AY.3.10.000085
S163A163VgCggTg11AY.300.000396
S163A163AgcGgcT11AY.300.000396
S163A163SGcgTcg11AY.330.000067
S163A163delGCG---11AY.330.000067
S163A163TGcgAcg11AY.340.000097
S163A163AgcGgcT11AY.370.000316
S163A163SGcgTcg11AY.390.000025
S163A163delGCG---11AY.390.000025
S163A163QGCgCAg11AY.40.000002
S163A163AgcGgcC11AY.4.2.10.000149
S163A163AgcGgcC11AY.4.30.000842
S163A163AgcGgcT11AY.4.40.000409
S163A163TGcgAcg11AY.4.50.000107
S163A163AgcGgcT11AY.410.000294
S163A163EgCggAg11AY.430.000004
S163A163PGcgCcg11AY.430.000004
S163A163TGcgAcg11AY.440.000006
S163A163KGCgAAg11AY.440.000006
S163A163delGCG---11AY.46.20.000635
S163A163AgcGgcT11AY.46.20.000635
S163A163GgCggGg11AY.46.40.000165
S163A163TGcgAcg11AY.46.60.000072
S163A163SGcgTcg11AY.46.60.000072
S163A163delGCG---11AY.470.000031
S163A163AgcGgcT11AY.480.000465
S163A163SGcgTcg11AY.480.000465
S163A163AgcGgcT11AY.5.30.000337
S163A163VgCggTg11AY.5.30.000337
S163A163AgcGgcT11AY.520.000814
S163A163VgCggTg11AY.540.000095
S163A163EgCggAg11AY.540.000095
S163A163AgcGgcT11AY.600.000938
S163A163delGCG---11AY.600.000938
S163A163SGcgTcg11AY.610.000105
S163A163TGcGAcC11AY.620.000436
S163A163delGCG---11AY.620.000436
S163A163AgcGgcT11AY.650.000533
S163A163VgCggTg11AY.690.000187
S163A163AgcGgcC11AY.70.000196
S163A163delGCG---11AY.7.20.000559
S163A163AgcGgcT11AY.700.000209
S163A163AgcGgcT11AY.710.000475
S163A163SGcgTcg11AY.740.000116
S163A163AgcGgcT11AY.75.10.00018
S163A163AgcGgcA11AY.80.000606
S163A163EgCggAg11AY.840.000437
S163A163VgCggTg11AY.840.000437
S163A163delGCG---11AY.850.000427
S163A163AgcGgcT11AY.860.00083
S163A163AgcGgcC11AY.880.000884
S163A163AgcGgcT11AY.890.004902
S163A163del1GCG-NN11AY.90.000068
S163A163delGCG---11AY.90.000068
S163A163VgCggTg11AY.90.000068
S163A163VgCggTg11AY.9.20.000037
S163A163VgCggTg11AY.940.000443
S163A163AgcGgcT11AY.950.000761
S163A163VgCggTg11AY.980.000079
S163A163EgCggAg11AY.98.10.000048
S163A163TGcgAcg11AY.99.10.001553
S163A163SGcgTcg11AY.99.20.000092
S163A163TGcgAcg11AZ.10.000867
S163A163delGCG---11AZ.20.000821
S163A163delGCG---11AZ.50.003509
S163A163delGCG---11B0.000128
S163A163TGcgAcg11B.10.000009
S163A163CGCGTGC11B.10.000009
S163A163WGCgTGg11B.10.000009
S163A163WGCgTGg11B.1.10.000018
S163A163MGCgATg11B.1.10.000018
S163A163CGCGTGC11B.1.10.000018
S163A163PGcgCcg11B.1.10.000018
S163A163TGcgAcg11B.1.10.000018
S163A163SGcgTcg11B.1.1.1170.009709
S163A163delGCG---11B.1.1.1390.022727
S163A163VgCggTg11B.1.1.1530.001095
S163A163AgcGgcT11B.1.1.2220.000204
S163A163AgcGgcT11B.1.1.2630.001558
S163A163delGCG---11B.1.1.2840.000107
S163A163SGcgTcg11B.1.1.2890.002083
S163A163delGCG---11B.1.1.3110.000358
S163A163AgcGgcT11B.1.1.3180.000302
S163A163VgCggTg11B.1.1.3370.003597
S163A163AgcGgcT11B.1.1.370.000193
S163A163AgcGgcT11B.1.1.3750.011905
S163A163SGcgTcg11B.1.1.3970.002252
S163A163VgCggTg11B.1.1.4480.002033
S163A163VgCggTg11B.1.1.4590.015385
S163A163SGcgTcg11B.1.1.480.002874
S163A163AgcGgcT11B.1.1.4860.001577
S163A163delGCG---11B.1.1.5190.00004
S163A163VgCggTg11B.1.1.5190.00004
S163A163AgcGgcT11B.1.1.5210.005348
S163A163AgcGgcT11B.1.1.5230.001563
S163A163del2GCg--g11B.1.1.70.000001
S163A163AgcGgcT11B.1.1.700.000341
S163A163SGcgTcg11B.1.1.700.000341
S163A163AgcGgcT11B.1.1.970.029412
S163A163delGCG---11B.1.1150.021739
S163A163delGCG---11B.1.1400.018868
S163A163AgcGgcT11B.1.1470.000756
S163A163delGCG---11B.1.1600.000031
S163A163VgCggTg11B.1.1600.000031
S163A163delGCG---11B.1.160.230.004831
S163A163VgCggTg11B.1.160.320.004292
S163A163EgCggAg11B.1.1770.000013
S163A163SGcgTcg11B.1.1770.000013
S163A163TGcgAcg11B.1.1770.000013
S163A163VgCggTg11B.1.1770.000013
S163A163WGCgTGg11B.1.1770.000013
S163A163AgcGgcT11B.1.177.120.000152
S163A163delGCG---11B.1.177.160.000664
S163A163AgcGgcT11B.1.177.160.000664
S163A163AgcGgcT11B.1.177.210.000076
S163A163delGCG---11B.1.177.40.000211
S163A163AgcGgcT11B.1.177.40.000211
S163A163delGCG---11B.1.177.60.000977
S163A163AgcGgcT11B.1.177.60.000977
S163A163delGCG---11B.1.177.620.001192
S163A163AgcGgcT11B.1.177.830.001481
S163A163AgcGgcT11B.1.177.860.000183
S163A163delGCG---11B.1.177.870.000728
S163A163PGcgCcg11B.1.20.000009
S163A163EgCggAg11B.1.20.000009
S163A163TGcgAcg11B.1.20.000009
S163A163del2GCg--g11B.1.20.000009
S163A163del1Gcg-cg11B.1.20.000009
S163A163AgcGgcT11B.1.2120.016667
S163A163AgcGgcT11B.1.2140.003663
S163A163delGCG---11B.1.2180.005155
S163A163VgCggTg11B.1.2340.000132
S163A163SGcgTcg11B.1.2410.000812
S163A163AgcGgcA11B.1.2600.003344
S163A163IGCGATT11B.1.2600.003344
S163A163delGCG---11B.1.2600.003344
S163A163VgCggTg11B.1.3330.010526
S163A163delGCG---11B.1.3510.00003
S163A163SGcgTcg11B.1.3510.00003
S163A163VgCggTg11B.1.351.20.000303
S163A163VgCggTg11B.1.360.000146
S163A163delGCG---11B.1.36.180.00042
S163A163VgCggTg11B.1.36.240.006173
S163A163AgcGgcT11B.1.3670.000792
S163A163VgCggTg11B.1.3670.000792
S163A163AgcGgcT11B.1.3690.000285
S163A163AgcGgcT11B.1.3810.007812
S163A163AgcGgcT11B.1.4040.001302
S163A163VgCggTg11B.1.4130.004255
S163A163delGCG---11B.1.4150.014286
S163A163delGCG---11B.1.4270.00005
S163A163VgCggTg11B.1.4290.000024
S163A163VgCggTg11B.1.4590.004082
S163A163AgcGgcT11B.1.4680.005714
S163A163AgcGgcA11B.1.4690.00361
S163A163VgCggTg11B.1.4700.001404
S163A163delGCG---11B.1.5250.000113
S163A163AgcGgcT11B.1.5250.000113
S163A163SGcgTcg11B.1.5260.000024
S163A163delGCG---11B.1.5610.000397
S163A163AgcGgcT11B.1.5740.002151
S163A163SGcgTcg11B.1.5770.000687
S163A163AgcGgcT11B.1.5960.000087
S163A163EgCggAg11B.1.5960.000087
S163A163AgcGgcT11B.1.6120.002653
S163A163delGCG---11B.1.617.10.000129
S163A163AgcGgcT11B.1.617.30.002985
S163A163delGCG---11B.1.6200.000946
S163A163del1GcG-cN11B.1.6210.000089
S163A163delGCG---11B.1.621.10.000506
S163A163TGcgAcg11B.1.6280.000352
S163A163AgcGgcC11B.1.6300.005236
S163A163delGCG---11B.1.6380.052632
S163A163VgCggTg11B.1.780.008547
S163A163AgcGgcT11B.1.830.015385
S163A163AgcGgcT11B.30.000831
S163A163delGCG---11B.340.013699
S163A163AgcGgcT11B.350.007812
S163A163AgcGgcA11B.60.00091
S163A163VgCggTg11B.6.60.000889
S163A163AgcGgcT11B.6.60.000889
S163A163VgCggTg11C.160.00106
S163A163TGcgAcg11C.370.000116
S163A163AgcGgcT11D.20.000075
S163A163AgcGgcT11N.10.016949
S163A163VgCggTg11P.1.10.000318
S163A163delGCG---11P.1.10.000318
S163A163SGcgTcg11P.20.000187
S163A163AgcGgcT11Q.30.000145
S163A163VgCggTg11Q.80.000165
S163A163AgcGgcT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.