CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 158

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S158R158GnonsynAgaGga252013525195500.99976822034-22036
S158R158GnonsynAgAGgT25201353530.00014007222034-22036
S158R158GnonsynAgAGgG25201351930.000076583222034-22036
S158R158GnonsynAgAGgC2520135390.000015475422034-22036
S158R158SnonsynagAagC364435990.98765122034-22036
S158R158SnonsynagAagT3644450.012349122034-22036
S158R158deldelAGA---12241224122034-22036
S158R158XnonsynAgaTga6584090.62158122034-22036
S158R158XnonsynAGaTAa6582470.3753822034-22036
S158R158XnonsynAGATAG65820.0030395122034-22036
S158R158del1delAga-ga4794650.97077222034-22036
S158R158del1delAGA-NN47970.014613822034-22036
S158R158del1delAgA-gN47930.0062630522034-22036
S158R158del1delagAag-47920.0041753722034-22036
S158R158del1delAGa-Na47910.0020876822034-22036
S158R158del1delAgA-gT47910.0020876822034-22036
S158R158YnonsynAGATAT235235122034-22036
S158R158CnonsynAgATgT2302290.99565222034-22036
S158R158CnonsynAgATgC23010.0043478322034-22036
S158R158EnonsynAGaGAa2222210.99549522034-22036
S158R158EnonsynAGAGAG22210.004504522034-22036
S158R158DnonsynAGAGAT221221122034-22036
S158R158VnonsynAGaGTa1561540.98717922034-22036
S158R158VnonsynAGAGTT15620.012820522034-22036
S158R158InonsynaGaaTa1261080.85714322034-22036
S158R158InonsynaGAaTT126150.11904822034-22036
S158R158InonsynaGAaTC12630.023809522034-22036
S158R158RsynAgaCga114700.61403522034-22036
S158R158RsynagAagG114400.35087722034-22036
S158R158RsynAgACgG11440.035087722034-22036
S158R158KnonsynaGaaAa102960.94117622034-22036
S158R158KnonsynaGAaAG10260.058823522034-22036
S158R158LnonsynAGaTTa44420.95454522034-22036
S158R158LnonsynAGACTC4410.022727322034-22036
S158R158LnonsynAGaCTa4410.022727322034-22036
S158R158FnonsynAGATTT13120.92307722034-22036
S158R158FnonsynAGATTC1310.076923122034-22036
S158R158NnonsynaGAaAT11100.90909122034-22036
S158R158QnonsynAGaCAa1160.54545522034-22036
S158R158QnonsynAGACAG1150.45454522034-22036
S158R158NnonsynaGAaAC1110.090909122034-22036
S158R158TnonsynaGaaCa740.57142922034-22036
S158R158TnonsynaGAaCC720.28571422034-22036
S158R158TnonsynaGAaCT710.14285722034-22036
S158R158del2delAGA--N420.522034-22036
S158R158del2delAGA--G410.2522034-22036
S158R158del2delAGa--a410.2522034-22036
S158R158PnonsynAGaCCa210.522034-22036
S158R158PnonsynAGACCC210.522034-22036
S158R158HnonsynAGACAC11122034-22036
S158R158WnonsynAgATgG11122034-22036

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S158R158GAgaGga25195502520135All0.481894
S158R158GAgAGgT3532520135All0.000068
S158R158GAgAGgG1932520135All0.000037
S158R158GAgAGgC392520135All0.000007
S158R158GAgaGga603096603172AY.40.938672
S158R158GAgAGgG56603172AY.40.000087
S158R158GAgAGgT18603172AY.40.000028
S158R158GAgAGgC2603172AY.40.000003
S158R158GAgaGga246025246071B.1.617.20.926386
S158R158GAgAGgG21246071B.1.617.20.000079
S158R158GAgAGgT14246071B.1.617.20.000053
S158R158GAgAGgC11246071B.1.617.20.000041
S158R158GAgaGga210348210362AY.430.931939
S158R158GAgAGgC7210362AY.430.000031
S158R158GAgAGgG5210362AY.430.000022
S158R158GAgAGgT2210362AY.430.000009
S158R158GAgaGga154123154277AY.250.927022
S158R158GAgAGgT154154277AY.250.000926
S158R158GAgaGga146279146302AY.1030.908255
S158R158GAgAGgC9146302AY.1030.000056
S158R158GAgAGgG9146302AY.1030.000056
S158R158GAgAGgT5146302AY.1030.000031
S158R158GAgaGga141062141078AY.440.858611
S158R158GAgAGgG14141078AY.440.000085
S158R158GAgAGgT2141078AY.440.000012
S158R158GAgaGga9263492649AY.30.921374
S158R158GAgAGgG892649AY.30.00008
S158R158GAgAGgT792649AY.30.00007
S158R158GAgaGga6334963354AY.290.999243
S158R158GAgAGgG563354AY.290.000079
S158R158GAgaGga4538645387AY.50.937185
S158R158GAgAGgG145387AY.50.000021
S158R158GAgaGga4530545306AY.4.20.982606
S158R158GAgAGgG145306AY.4.20.000022
S158R158GAgaGga3365933664AY.390.831764
S158R158GAgAGgG433664AY.390.000099
S158R158GAgAGgT133664AY.390.000025
S158R158GAgaGga3348133482AY.1020.887713
S158R158GAgAGgC133482AY.1020.000027
S158R158GAgaGga3210032118AY.260.908756
S158R158GAgAGgT1732118AY.260.000481
S158R158GAgAGgG132118AY.260.000028
S158R158GAgaGga3003330034AY.470.934181
S158R158GAgAGgC130034AY.470.000031
S158R158GAgaGga2497524975AY.1200.928542
S158R158GAgaGga2485824867AY.1190.877692
S158R158GAgAGgG824867AY.1190.000282
S158R158GAgAGgT124867AY.1190.000035
S158R158GAgaGga2485724857AY.9.20.912988
S158R158GAgaGga2340723412AY.200.909716
S158R158GAgAGgT323412AY.200.000117
S158R158GAgAGgG223412AY.200.000078
S158R158GAgaGga2270522718AY.60.933824
S158R158GAgAGgG1322718AY.60.000535
S158R158GAgaGga2264322645AY.39.10.896966
S158R158GAgAGgG222645AY.39.10.000079
S158R158GAgaGga2169121691AY.420.872631
S158R158GAgaGga1913319134AY.98.10.926627
S158R158GAgAGgC119134AY.98.10.000048
S158R158GAgaGga1857818581AY.1000.854711
S158R158GAgAGgC318581AY.1000.000138
S158R158GAgaGga1555615562AY.750.871485
S158R158GAgAGgT315562AY.750.000168
S158R158GAgAGgG315562AY.750.000168
S158R158GAgaGga1530415305AY.270.990486
S158R158GAgAGgG115305AY.270.000065
S158R158GAgaGga1442014430AY.1180.903396
S158R158GAgAGgT614430AY.1180.000376
S158R158GAgAGgG414430AY.1180.000251
S158R158GAgaGga1362913629AY.330.910117
S158R158GAgaGga1359713597AY.90.919089
S158R158GAgaGga1253012530AY.46.60.904758
S158R158GAgaGga1233712337AY.230.860501
S158R158GAgaGga1145111451AY.980.904574
S158R158GAgaGga1127611276AY.9.10.944072
S158R158GAgaGga1097810980AY.3.10.935971
S158R158GAgAGgG210980AY.3.10.000171
S158R158GAgaGga1024810248AY.140.901954
S158R158GAgaGga1000510006AY.1170.845588
S158R158GAgAGgT110006AY.1170.000085
S158R158GAgaGga97749774AY.99.20.900746
S158R158GAgaGga95049505AY.340.921555
S158R158GAgAGgT19505AY.340.000097
S158R158GAgaGga92809281AY.540.884821
S158R158GAgAGgT19281AY.540.000095
S158R158GAgaGga87808780AY.4.50.943782
S158R158GAgaGga84438443AY.7.10.951538
S158R158GAgaGga74927492AY.460.779767
S158R158GAgaGga74907492AY.610.784786
S158R158GAgAGgG27492AY.610.00021
S158R158GAgaGga69916991AY.740.808488
S158R158GAgaGga67756776AY.450.82441
S158R158GAgAGgG16776AY.450.000122
S158R158GAgaGga66676669AY.1210.902165
S158R158GAgAGgC26669AY.1210.000271
S158R158GAgaGga64366554AY.1130.916417
S158R158GAgAGgT1176554AY.1130.01666
S158R158GAgAGgG16554AY.1130.000142
S158R158GAgaGga64446454AY.4.2.10.960072
S158R158GAgAGgG106454AY.4.2.10.00149
S158R158GAgaGga59945994AY.360.888395
S158R158GAgaGga59225922AY.1100.667343
S158R158GAgaGga57405740AY.46.40.944234
S158R158GAgaGga53815381AY.130.866227
S158R158GAgaGga51035103AY.1110.934615
S158R158GAgaGga48904890AY.46.50.970238
S158R158GAgaGga48044804AY.690.896771
S158R158GAgaGga47594759AY.70.932771
S158R158GAgaGga46934693AY.75.10.846195
S158R158GAgaGga44354435AY.700.924729
S158R158GAgaGga39283928AY.1140.907788
S158R158GAgaGga38553855AY.29.10.850055
S158R158GAgaGga37803780AY.350.880914
S158R158SagAagC35993644All0.000688
S158R158SagAagT453644All0.000009
S158R158GAgaGga36443644AY.930.995085
S158R158GAgaGga30893089AY.5.40.854732
S158R158GAgaGga30853085AY.410.90682
S158R158GAgaGga29492950AY.920.84717
S158R158GAgAGgG12950AY.920.000287
S158R158GAgaGga29242924AY.120.924147
S158R158GAgaGga28982898AY.370.915929
S158R158GAgaGga28832883AY.116.10.897851
S158R158GAgaGga28292829AY.530.813399
S158R158GAgaGga27912791AY.120.10.895987
S158R158SagAagC27812781B.1.6280.979915
S158R158GAgaGga27452745AY.680.751437
S158R158GAgaGga27012701AY.1160.774591
S158R158GAgaGga26212621AY.5.30.884278
S158R158GAgaGga25842584AY.1060.865372
S158R158GAgaGga25542554AY.20.909544
S158R158GAgaGga25502550AY.630.98646
S158R158GAgaGga23322332AY.23.10.973289
S158R158GAgaGga22172217AY.4.40.907119
S158R158GAgaGga21872187AY.850.934216
S158R158GAgaGga21592159AY.620.940741
S158R158GAgaGga21572157AY.240.929741
S158R158GAgaGga20762076AY.940.918991
S158R158GAgaGga20602060AY.300.815196
S158R158GAgaGga18921892AY.710.898812
S158R158GAgaGga18851885AY.1070.878378
S158R158GAgaGga18721872AY.480.870698
S158R158GAgaGga18681868AY.10.739216
S158R158GAgaGga18181818AY.120.2.10.90583
S158R158GAgaGga17931793AY.670.832405
S158R158GAgaGga17871787AY.840.781715
S158R158GAgaGga17651765AY.1010.86562
S158R158GAgaGga16821682AY.7.20.940716
S158R158GAgaGga16811681AY.380.839241
S158R158GAgaGga16541656AY.100.876524
S158R158GAgAGgC21656AY.100.00106
S158R158GAgaGga16021602AY.590.848517
S158R158GAgaGga15921592AY.80.964848
S158R158GAgaGga15251528AY.640.907738
S158R158GAgAGgG31528AY.640.001786
S158R158GAgaGga15131513AY.650.806503
S158R158GAgaGga14811481AY.320.788605
S158R158GAgaGga14741474AY.570.967192
S158R158GAgaGga14681468AY.46.20.932656
S158R158GAgaGga14641464AY.730.974052
S158R158GAgaGga14281428AY.160.542141
S158R158GAgaGga14011412AY.1050.900965
S158R158GAgAGgG111412AY.1050.007074
S158R158GAgaGga13531353AY.39.1.10.980435
S158R158GAgaGga13511352AY.900.924709
S158R158GAgAGgG11352AY.900.000684
S158R158GAgaGga12911291AY.34.10.658338
S158R158GAgaGga12761276AY.4.10.941003
S158R158delAGA---12241224All0.000234
S158R158GAgaGga12051205AY.1090.891272
S158R158GAgaGga11431143AY.910.834916
S158R158GAgaGga11421142AY.500.91287
S158R158GAgaGga11321133AY.860.939419
S158R158GAgAGgG11133AY.860.00083
S158R158GAgaGga10951095AY.4.30.921717
S158R158GAgaGga10951095AY.870.91174
S158R158GAgaGga996996AY.46.30.929972
S158R158GAgaGga996996AY.510.905455
S158R158GAgaGga990990AY.580.898367
S158R158GAgaGga959959AY.600.899625
S158R158GAgaGga940940AY.46.10.965092
S158R158GAgaGga911911AY.880.805482
S158R158GAgaGga892892AY.660.954011
S158R158GAgaGga881881AY.16.10.414004
S158R158GAgaGga832832AY.800.939052
S158R158GAgaGga822822AY.520.669381
S158R158GAgaGga778780AY.790.941889
S158R158GAgAGgG2780AY.790.002421
S158R158GAgaGga775775AY.400.747348
S158R158GAgaGga764764AY.990.801679
S158R158GAgaGga750750AY.1080.826902
S158R158GAgaGga748748AY.190.852908
S158R158GAgaGga716716AY.950.544901
S158R158GAgaGga705705AY.720.959184
S158R158GAgaGga701701AY.110.93842
S158R158GAgaGga684684AY.120.20.879177
S158R158XAgaTga409658All0.000078
S158R158XAGaTAa247658All0.000047
S158R158XAGATAG2658All0
S158R158GAgaGga622622AY.39.20.958398
S158R158GAgaGga610610AY.820.82768
S158R158GAgaGga607607AY.770.684329
S158R158delAGA---596596B.1.1.5230.93125
S158R158GAgaGga574574AY.780.884438
S158R158GAgaGga572572AY.99.10.888199
S158R158GAgaGga544544AY.830.937931
S158R158GAgaGga498498AY.560.799358
S158R158GAgaGga485485AY.280.916824
S158R158del1Aga-ga465479All0.000089
S158R158del1AGA-NN7479All0.000001
S158R158del1AgA-gN3479All0.000001
S158R158del1agAag-2479All0
S158R158del1AgA-gT1479All0
S158R158del1AGa-Na1479All0
S158R158GAgaGga475475AY.970.807823
S158R158GAgaGga473473AY.9.2.10.934783
S158R158GAgaGga461461AY.1040.914683
S158R158GAgaGga458458AY.810.912351
S158R158GAgaGga455455AY.210.863378
S158R158GAgaGga448448AY.220.937238
S158R158GAgaGga392392AY.150.871111
S158R158GAgaGga374374AY.5.20.921182
S158R158GAgaGga295295AY.550.270642
S158R158SagAagC290290B.1.6310.976431
S158R158SagAagC286286B.1.6340.979452
S158R158GAgaGga243243AY.5.10.913534
S158R158GAgaGga236236AY.91.10.95935
S158R158YAGATAT235235All0.000045
S158R158XAGaTAa117235AY.1130.01666
S158R158XAgaTga117235AY.1130.01666
S158R158XAGATAG1235AY.1130.000142
S158R158CAgATgT229230All0.000044
S158R158CAgATgC1230All0
S158R158EAGaGAa221222All0.000042
S158R158EAGAGAG1222All0
S158R158DAGAGAT221221All0.000042
S158R158GAgaGga220220AY.490.702875
S158R158delAGA---206206AY.1170.01741
S158R158GAgaGga187187AY.760.903382
S158R158GAgaGga186186AY.890.911765
S158R158GAgaGga181181B.10.001658
S158R158GAgaGga163163AY.960.338174
S158R158VAGaGTa154156All0.000029
S158R158VAGAGTT2156All0
S158R158IaGaaTa108126All0.000021
S158R158IaGAaTT15126All0.000003
S158R158IaGAaTC3126All0.000001
S158R158EAGaGAa117118AY.1130.01666
S158R158EAGAGAG1118AY.1130.000142
S158R158CAgATgT117117AY.1130.01666
S158R158DAGAGAT117117AY.1130.01666
S158R158YAGATAT117117AY.1130.01666
S158R158RAgaCga70114All0.000013
S158R158RagAagG40114All0.000008
S158R158RAgACgG4114All0.000001
S158R158GAgaGga112112AY.170.918033
S158R158GAgaGga111111B0.014187
S158R158KaGaaAa96102All0.000018
S158R158KaGAaAG6102All0.000001
S158R158GAgaGga9797B.1.617.30.289552
S158R158GAgaGga9494AY.180.949495
S158R158SagAagC9094B.10.000824
S158R158SagAagT494B.10.000037
S158R158XAgaTga8282B.10.000751
S158R158VAGaGTa7878AY.40.000121
S158R158IaGaaTa6266B.1.1.70.000056
S158R158IaGAaTT466B.1.1.70.000004
S158R158XAgaTga3060AY.250.00018
S158R158XAGaTAa3060AY.250.00018
S158R158del1Aga-ga5860AY.430.000257
S158R158del1AGA-NN260AY.430.000009
S158R158del1Aga-ga5657B.1.617.20.000211
S158R158del1AgA-gT157B.1.617.20.000004
S158R158del1Aga-ga5050AY.200.001943
S158R158GAgaGga4949AY.1150.255208
S158R158RAgaCga4449B.10.000403
S158R158RagAagG449B.10.000037
S158R158RAgACgG149B.10.000009
S158R158KaGaaAa4747B.1.1.70.000042
S158R158GAgaGga4646AY.310.851852
S158R158LAGaTTa4244All0.000008
S158R158LAGaCTa144All0
S158R158LAGACTC144All0
S158R158delAGA---4141B.1.1.70.000037
S158R158SagAagC3641B.1.1.70.000032
S158R158SagAagT541B.1.1.70.000004
S158R158XAgaTga2140AY.40.000033
S158R158XAGaTAa1840AY.40.000028
S158R158XAGATAG140AY.40.000002
S158R158GAgaGga4040B.1.1.70.000036
S158R158delAGA---3737AY.430.000164
S158R158XAgaTga2437B.1.617.20.00009
S158R158XAGaTAa1337B.1.617.20.000049
S158R158XAGaTAa1734AY.260.000481
S158R158XAgaTga1734AY.260.000481
S158R158XAgaTga3131AY.430.000137
S158R158CAgATgT3030AY.250.00018
S158R158YAGATAT3030AY.250.00018
S158R158DAGAGAT2929AY.250.000174
S158R158EAGaGAa2929AY.250.000174
S158R158delAGA---2929AY.40.000045
S158R158XAGaTAa1629B.1.1.70.000014
S158R158XAgaTga1329B.1.1.70.000012
S158R158LAGaTTa2828B.1.1.70.000025
S158R158delAGA---2828B.1.617.20.000105
S158R158delAGA---2828C.370.00325
S158R158del1Aga-ga2627AY.1010.012751
S158R158del1AGA-NN127AY.1010.00049
S158R158del1Aga-ga2727AY.440.000164
S158R158delAGA---2222P.1.150.005112
S158R158del1Aga-ga2020AY.1000.00092
S158R158delAGA---1919AY.250.000114
S158R158del1Aga-ga1519AY.250.00009
S158R158del1AGA-NN219AY.250.000012
S158R158del1AGa-Na119AY.250.000006
S158R158del1AgA-gN119AY.250.000006
S158R158YAGATAT1919AY.40.00003
S158R158delAGA---1919B.1.10.000345
S158R158GAgaGga1919P.10.000299
S158R158delAGA---1919P.10.000299
S158R158del1Aga-ga1718AY.1030.000106
S158R158del1AGA-NN118AY.1030.000006
S158R158CAgATgT1818AY.40.000028
S158R158IaGaaTa918P.10.000142
S158R158IaGAaTT918P.10.000142
S158R158XAgaTga1717AY.1100.001916
S158R158YAGATAT1717AY.260.000481
S158R158DAGAGAT1717AY.260.000481
S158R158EAGaGAa1717AY.260.000481
S158R158CAgATgT1717AY.260.000481
S158R158GAgaGga1717B.1.617.10.002192
S158R158XAgaTga916AY.30.00009
S158R158XAGaTAa716AY.30.00007
S158R158DAGAGAT1616AY.40.000025
S158R158EAGaGAa1616AY.40.000025
S158R158delAGA---1515AY.440.000091
S158R158GAgaGga1515B.1.1.5190.000596
S158R158RagAagG1215B.1.1.70.000011
S158R158RAgaCga315B.1.1.70.000003
S158R158GAgaGga1515B.1.1770.000198
S158R158KaGaaAa1515B.1.5960.001307
S158R158YAGATAT1515B.1.617.20.000056
S158R158del1Aga-ga1414AY.1020.000371
S158R158VAGaGTa1414AY.1020.000371
S158R158del1Aga-ga1414AY.260.000396
S158R158GAgaGga1414B.1.10.000254
S158R158SagAagC914B.1.10.000163
S158R158SagAagT514B.1.10.000091
S158R158SagAagC1414B.1.6270.028283
S158R158SagAagC1314P.1.120.006292
S158R158SagAagT114P.1.120.000484
S158R158FAGATTT1213All0.000002
S158R158FAGATTC113All0
S158R158CAgATgT1313B.1.617.20.000049
S158R158EAGaGAa1313B.1.617.20.000049
S158R158DAGAGAT1313B.1.617.20.000049
S158R158XAgaTga612AY.1180.000376
S158R158XAGaTAa612AY.1180.000376
S158R158VAGaGTa1212AY.4.20.00026
S158R158KaGaaAa1012B.10.000092
S158R158KaGAaAG212B.10.000018
S158R158NaGAaAT1011All0.000002
S158R158QAGaCAa611All0.000001
S158R158QAGACAG511All0.000001
S158R158NaGAaAC111All0
S158R158del1Aga-ga1111AY.30.000109
S158R158del1Aga-ga1111AY.40.000017
S158R158delAGA---1111B.10.000101
S158R158VAGaGTa1010B.1.617.20.000038
S158R158XAgaTga59AY.1030.000031
S158R158XAGaTAa49AY.1030.000025
S158R158VAGaGTa99AY.290.000142
S158R158del1Aga-ga99AY.330.000601
S158R158del1Aga-ga99AY.420.000362
S158R158delAGA---99B.1.1770.000119
S158R158XAgaTga59P.10.000079
S158R158XAGaTAa49P.10.000063
S158R158VAGaGTa68AY.430.000027
S158R158VAGAGTT28AY.430.000009
S158R158SagAagC88B.1.1.5190.000318
S158R158LAGaTTa88P.10.000126
S158R158FAGATTT88P.10.000126
S158R158SagAagT68P.10.000095
S158R158SagAagC28P.10.000032
S158R158TaGaaCa47All0.000001
S158R158TaGAaCC27All0
S158R158TaGAaCT17All0
S158R158CAgATgT77AY.30.00007
S158R158EAGaGAa77AY.30.00007
S158R158YAGATAT77AY.30.00007
S158R158DAGAGAT77AY.30.00007
S158R158del1Aga-ga77AY.340.000679
S158R158del1Aga-ga77AY.9.20.000257
S158R158del1Aga-ga77AY.99.20.000645
S158R158delAGA---77B.1.6210.00062
S158R158SagAagC77R.10.00063
S158R158SagAagC66A.2.50.002994
S158R158delAGA---66AY.1000.000276
S158R158delAGA---66AY.1030.000037
S158R158DAGAGAT66AY.1180.000376
S158R158YAGATAT66AY.1180.000376
S158R158CAgATgT66AY.1180.000376
S158R158EAGaGAa66AY.1180.000376
S158R158XAgaTga36AY.200.000117
S158R158XAGaTAa36AY.200.000117
S158R158delAGA---66AY.4.50.000645
S158R158IaGaaTa46AY.430.000018
S158R158IaGAaTT26AY.430.000009
S158R158XAgaTga36AY.750.000168
S158R158XAGaTAa36AY.750.000168
S158R158delAGA---66B.1.1.3170.00247
S158R158RagAagG46B.1.1770.000053
S158R158RAgACgG16B.1.1770.000013
S158R158RAgaCga16B.1.1770.000013
S158R158GAgaGga66B.1.2140.021978
S158R158delAGA---66B.1.3510.000178
S158R158del1Aga-ga55AY.1090.003698
S158R158del1Aga-ga55AY.120.00158
S158R158del1Aga-ga55AY.390.000124
S158R158XAGaTAa35AY.440.000018
S158R158XAgaTga25AY.440.000012
S158R158del1Aga-ga55AY.460.00052
S158R158GAgaGga55B.1.1.5230.007812
S158R158delAGA---55B.1.1310.04386
S158R158GAgaGga55B.1.20.000044
S158R158SagAagT35B.1.20.000026
S158R158SagAagC25B.1.20.000018
S158R158GAgaGga55B.1.6230.002682
S158R158CAgATgT55P.10.000079
S158R158GAgaGga44A0.001548
S158R158del2AGA--N24All0
S158R158del2AGA--G14All0
S158R158del2AGa--a14All0
S158R158CAgATgT44AY.1030.000025
S158R158VAGaGTa44AY.1030.000025
S158R158EAGaGAa44AY.1030.000025
S158R158YAGATAT44AY.1030.000025
S158R158DAGAGAT44AY.1030.000025
S158R158del1Aga-ga44AY.130.000644
S158R158delAGA---44AY.290.000063
S158R158delAGA---44AY.29.10.000882
S158R158delAGA---44AY.30.00004
S158R158del1Aga-ga44AY.380.001997
S158R158del1Aga-ga44AY.46.60.000289
S158R158del1Aga-ga44AY.470.000124
S158R158del1Aga-ga44AY.50.000083
S158R158del1Aga-ga44AY.700.000834
S158R158del1Aga-ga44AY.98.10.000194
S158R158IaGaaTa44B.10.000037
S158R158RAgaCga24B.1.10.000036
S158R158RAgACgG14B.1.10.000018
S158R158RagAagG14B.1.10.000018
S158R158GAgaGga44B.1.1.5260.014184
S158R158FAGATTT44B.1.1.70.000004
S158R158YAGATAT44B.1.1.70.000004
S158R158NaGAaAT44B.1.1.70.000004
S158R158IaGaaTa44B.1.1770.000053
S158R158SagAagC24B.1.4290.000047
S158R158SagAagT24B.1.4290.000047
S158R158GAgaGga44B.1.4740.007605
S158R158GAgaGga44B.1.6040.068966
S158R158SagAagC44C.140.017316
S158R158GAgaGga44C.36.30.002269
S158R158delAGA---44C.37.10.010471
S158R158KaGaaAa44P.10.000063
S158R158NaGAaAT44P.10.000063
S158R158YAGATAT44P.10.000063
S158R158RagAagG34P.10.000047
S158R158RAgaCga14P.10.000016
S158R158GAgaGga44P.1.10.001271
S158R158GAgaGga33A.2.50.001497
S158R158del1Aga-ga33AY.10.001187
S158R158XAgaTga33AY.1020.00008
S158R158delAGA---33AY.1020.00008
S158R158del1Aga-ga33AY.1170.000254
S158R158del1Aga-ga33AY.1210.000406
S158R158CAgATgT33AY.200.000117
S158R158DAGAGAT33AY.200.000117
S158R158EAGaGAa33AY.200.000117
S158R158YAGATAT33AY.200.000117
S158R158VAGaGTa33AY.250.000018
S158R158delAGA---33AY.390.000074
S158R158RAgaCga33AY.430.000013
S158R158SagAagC33AY.440.000018
S158R158delAGA---33AY.710.001425
S158R158YAGATAT33AY.750.000168
S158R158CAgATgT33AY.750.000168
S158R158EAGaGAa33AY.750.000168
S158R158del1Aga-ga33AY.750.000168
S158R158DAGAGAT33AY.750.000168
S158R158del1Aga-ga33AY.980.000237
S158R158del1Aga-ga23B.10.000018
S158R158del1agAag-13B.10.000009
S158R158KaGaaAa23B.1.10.000036
S158R158KaGAaAG13B.1.10.000018
S158R158SagAagT33B.1.1.5230.004687
S158R158KaGaaAa23B.1.1770.000026
S158R158KaGAaAG13B.1.1770.000013
S158R158GAgaGga33B.1.36.80.003
S158R158GAgaGga33B.1.5760.00272
S158R158GAgaGga33B.1.6280.001057
S158R158GAgaGga33B.1.6370.000219
S158R158RagAagG13B.1.6370.000073
S158R158RAgACgG13B.1.6370.000073
S158R158RAgaCga13B.1.6370.000073
S158R158GAgaGga33B.4.80.214286
S158R158GAgaGga220.111111
S158R158RagAagG220.111111
S158R158GAgaGga22A.210.00554
S158R158PAGACCC12All0
S158R158PAGaCCa12All0
S158R158GAgaGga22AU.30.004219
S158R158RAgaCga22AY.1100.000225
S158R158KaGaaAa22AY.1130.000285
S158R158IaGaaTa12AY.1130.000142
S158R158LAGACTC12AY.1130.000142
S158R158LAGaCTa12AY.1130.000142
S158R158TaGAaCC12AY.1130.000142
S158R158PAGACCC12AY.1130.000142
S158R158PAGaCCa12AY.1130.000142
S158R158NaGAaAC12AY.1130.000142
S158R158TaGaaCa12AY.1130.000142
S158R158IaGAaTC12AY.1130.000142
S158R158NaGAaAT12AY.1130.000142
S158R158XAGaTAa12AY.1170.000085
S158R158XAgaTga12AY.1170.000085
S158R158delAGA---22AY.1180.000125
S158R158XAGaTAa12AY.1190.000035
S158R158del1Aga-ga12AY.1190.000035
S158R158XAgaTga12AY.1190.000035
S158R158del1AGA-NN12AY.1190.000035
S158R158del1Aga-ga22AY.140.000176
S158R158delAGA---22AY.230.000139
S158R158del1Aga-ga22AY.230.000139
S158R158SagAagC12AY.250.000006
S158R158SagAagT12AY.250.000006
S158R158SagAagC22AY.260.000057
S158R158del1Aga-ga22AY.320.001065
S158R158VAGaGTa22AY.390.000049
S158R158XAGaTAa12AY.390.000025
S158R158XAgaTga12AY.390.000025
S158R158del1Aga-ga22AY.4.50.000215
S158R158VAGaGTa22AY.420.00008
S158R158SagAagT22AY.430.000009
S158R158DAGAGAT22AY.440.000012
S158R158CAgATgT22AY.440.000012
S158R158YAGATAT22AY.440.000012
S158R158EAGaGAa22AY.440.000012
S158R158delAGA---22AY.50.000041
S158R158del1Aga-ga22AY.540.000191
S158R158XAGaTAa12AY.540.000095
S158R158XAgaTga12AY.540.000095
S158R158del1Aga-ga22AY.610.00021
S158R158TaGaaCa12AY.680.000274
S158R158TaGAaCT12AY.680.000274
S158R158SagAagC22AY.75.10.000361
S158R158del1Aga-ga22AY.790.002421
S158R158delAGA---22AY.820.002714
S158R158delAGA---22AY.90.000135
S158R158XAgaTga22AY.9.20.000073
S158R158VAGaGTa22AY.9.20.000073
S158R158delAGA---22AY.980.000158
S158R158LAGaTTa22B.10.000018
S158R158QAGaCAa12B.10.000009
S158R158QAGACAG12B.10.000009
S158R158QAGACAG12B.1.10.000018
S158R158QAGaCAa12B.1.10.000018
S158R158SagAagC22B.1.1.2200.003717
S158R158IaGaaTa12B.1.1.2690.001353
S158R158IaGAaTC12B.1.1.2690.001353
S158R158delAGA---22B.1.1.3150.016949
S158R158del2AGA--N12B.1.1.70.000001
S158R158del2AGa--a12B.1.1.70.000001
S158R158delAGA---22B.1.1600.000062
S158R158QAGACAG12B.1.1770.000013
S158R158SagAagT12B.1.1770.000013
S158R158QAGaCAa12B.1.1770.000013
S158R158SagAagC12B.1.1770.000013
S158R158SagAagC22B.1.177.730.001133
S158R158delAGA---22B.1.20.000018
S158R158RagAagG22B.1.20.000018
S158R158KaGaaAa22B.1.20.000018
S158R158GAgaGga22B.1.2080.08
S158R158KaGaaAa22B.1.2340.000264
S158R158SagAagT22B.1.2400.000431
S158R158GAgaGga22B.1.3490.00143
S158R158IaGaaTa22B.1.3510.000059
S158R158RAgaCga22B.1.36.290.001035
S158R158GAgaGga22B.1.36.360.001204
S158R158IaGaaTa22B.1.4290.000047
S158R158GAgaGga22B.1.5300.014286
S158R158GAgaGga22B.1.5640.000852
S158R158XAgaTga22B.1.5960.000174
S158R158delAGA---22B.1.5960.000174
S158R158GAgaGga22B.1.6000.011696
S158R158GAgaGga22B.1.6090.000959
S158R158RAgaCga22B.1.617.20.000008
S158R158RagAagG22B.1.6210.000177
S158R158GAgaGga22B.1.6210.000177
S158R158KaGAaAG12B.1.6370.000073
S158R158KaGaaAa12B.1.6370.000073
S158R158QAGACAG12B.1.6370.000073
S158R158QAGaCAa12B.1.6370.000073
S158R158SagAagC22B.100.016529
S158R158KaGaaAa22C.180.005181
S158R158SagAagC12C.370.000116
S158R158SagAagT12C.370.000116
S158R158GAgaGga22P.1.170.000324
S158R158delAGA---22P.1.70.000639
S158R158delAGA---11A0.000387
S158R158IaGaaTa11A0.000387
S158R158KaGaaAa11A0.000387
S158R158SagAagC11A.10.000282
S158R158delAGA---11A.2.40.003367
S158R158IaGaaTa11A.2.50.000499
S158R158delAGA---11A.2.50.000499
S158R158SagAagC11A.2.5.10.004808
S158R158SagAagC11A.2.5.20.001572
S158R158GAgaGga11A.2.5.20.001572
S158R158RAgaCga11A.50.001923
S158R158RagAagG11AA.10.007246
S158R158RAgaCga11AD.10.004115
S158R158HAGACAC11All0
S158R158WAgATgG11All0
S158R158GAgaGga11AT.10.005128
S158R158XAgaTga11AY.1000.000046
S158R158VAGaGTa11AY.1000.000046
S158R158del1Aga-ga11AY.1060.000335
S158R158del1Aga-ga11AY.1070.000466
S158R158VAGaGTa11AY.1100.000113
S158R158IaGaaTa11AY.1100.000113
S158R158SagAagT11AY.1130.000142
S158R158QAGaCAa11AY.1130.000142
S158R158del1Aga-ga11AY.1130.000142
S158R158delAGA---11AY.1130.000142
S158R158HAGACAC11AY.1130.000142
S158R158WAgATgG11AY.1130.000142
S158R158del1Aga-ga11AY.1140.000231
S158R158SagAagC11AY.1160.000287
S158R158SagAagC11AY.116.10.000311
S158R158YAGATAT11AY.1170.000085
S158R158CAgATgT11AY.1170.000085
S158R158EAGaGAa11AY.1170.000085
S158R158DAGAGAT11AY.1170.000085
S158R158del1Aga-ga11AY.1180.000063
S158R158delAGA---11AY.1190.000035
S158R158YAGATAT11AY.1190.000035
S158R158CAgATgT11AY.1190.000035
S158R158DAGAGAT11AY.1190.000035
S158R158VAGaGTa11AY.1190.000035
S158R158EAGaGAa11AY.1190.000035
S158R158delAGA---11AY.120.000316
S158R158delAGA---11AY.1200.000037
S158R158VAGaGTa11AY.1200.000037
S158R158del1AgA-gN11AY.1200.000037
S158R158delAGA---11AY.1210.000135
S158R158del1Aga-ga11AY.160.00038
S158R158del1Aga-ga11AY.190.00114
S158R158del1Aga-ga11AY.20.000356
S158R158delAGA---11AY.200.000039
S158R158VAGaGTa11AY.200.000039
S158R158SagAagC11AY.230.00007
S158R158VAGaGTa11AY.230.00007
S158R158delAGA---11AY.240.000431
S158R158del2AGA--N11AY.250.000006
S158R158IaGaaTa11AY.260.000028
S158R158RAgaCga11AY.260.000028
S158R158delAGA---11AY.260.000028
S158R158delAGA---11AY.270.000065
S158R158IaGaaTa11AY.29.10.000221
S158R158SagAagC11AY.30.00001
S158R158del2AGA--G11AY.30.00001
S158R158delAGA---11AY.330.000067
S158R158VAGaGTa11AY.340.000097
S158R158XAgaTga11AY.340.000097
S158R158del1Aga-ga11AY.34.10.00051
S158R158del1Aga-ga11AY.350.000233
S158R158XAgaTga11AY.380.000499
S158R158YAGATAT11AY.390.000025
S158R158CAgATgT11AY.390.000025
S158R158EAGaGAa11AY.390.000025
S158R158DAGAGAT11AY.390.000025
S158R158del1Aga-ga11AY.39.10.00004
S158R158delAGA---11AY.39.10.00004
S158R158QAGACAG11AY.40.000002
S158R158NaGAaAT11AY.40.000002
S158R158del1Aga-ga11AY.4.20.000022
S158R158LAGaTTa11AY.420.00004
S158R158XAgaTga11AY.420.00004
S158R158IaGaaTa11AY.420.00004
S158R158TaGaaCa11AY.420.00004
S158R158RAgaCga11AY.440.000006
S158R158XAgaTga11AY.450.000122
S158R158delAGA---11AY.460.000104
S158R158delAGA---11AY.46.20.000635
S158R158del1Aga-ga11AY.46.40.000165
S158R158delAGA---11AY.46.60.000072
S158R158XAgaTga11AY.46.60.000072
S158R158delAGA---11AY.470.000031
S158R158del1Aga-ga11AY.480.000465
S158R158VAGaGTa11AY.50.000021
S158R158del1Aga-ga11AY.5.30.000337
S158R158del1Aga-ga11AY.5.40.000277
S158R158del1Aga-ga11AY.510.000909
S158R158YAGATAT11AY.540.000095
S158R158VAGaGTa11AY.540.000095
S158R158EAGaGAa11AY.540.000095
S158R158DAGAGAT11AY.540.000095
S158R158CAgATgT11AY.540.000095
S158R158XAgaTga11AY.550.000917
S158R158delAGA---11AY.600.000938
S158R158delAGA---11AY.620.000436
S158R158RAgaCga11AY.620.000436
S158R158del1Aga-ga11AY.650.000533
S158R158delAGA---11AY.670.000464
S158R158XAgaTga11AY.690.000187
S158R158KaGaaAa11AY.690.000187
S158R158RAgaCga11AY.690.000187
S158R158delAGA---11AY.7.20.000559
S158R158del1Aga-ga11AY.720.001361
S158R158XAgaTga11AY.720.001361
S158R158delAGA---11AY.730.000665
S158R158del1Aga-ga11AY.740.000116
S158R158SagAagC11AY.750.000056
S158R158delAGA---11AY.750.000056
S158R158delAGA---11AY.840.000437
S158R158delAGA---11AY.850.000427
S158R158VAGaGTa11AY.850.000427
S158R158VAGaGTa11AY.90.000068
S158R158delAGA---11AY.9.10.000084
S158R158del1Aga-ga11AY.9.10.000084
S158R158SagAagC11AY.9.20.000037
S158R158del1Aga-ga11AY.910.00073
S158R158del1Aga-ga11AY.920.000287
S158R158RAgaCga11AY.940.000443
S158R158delAGA---11AY.940.000443
S158R158XAgaTga11AY.950.000761
S158R158SagAagC11AY.960.002075
S158R158XAgaTga11AY.970.001701
S158R158VAGaGTa11AY.980.000079
S158R158delAGA---11AY.98.10.000048
S158R158delAGA---11AZ.20.000821
S158R158delAGA---11AZ.50.003509
S158R158delAGA---11B0.000128
S158R158SagAagC11B0.000128
S158R158IaGaaTa11B.1.10.000018
S158R158XAGaTAa11B.1.10.000018
S158R158LAGaTTa11B.1.10.000018
S158R158SagAagC11B.1.1.10.000327
S158R158SagAagC11B.1.1.1170.009709
S158R158SagAagT11B.1.1.1320.014925
S158R158delAGA---11B.1.1.1390.022727
S158R158delAGA---11B.1.1.1410.002012
S158R158SagAagT11B.1.1.1700.001247
S158R158IaGaaTa11B.1.1.2190.005
S158R158SagAagC11B.1.1.2220.000204
S158R158IaGaaTa11B.1.1.2530.002506
S158R158FAGATTC11B.1.1.2690.001353
S158R158LAGaTTa11B.1.1.2690.001353
S158R158CAgATgC11B.1.1.2690.001353
S158R158XAgaTga11B.1.1.2690.001353
S158R158SagAagC11B.1.1.2690.001353
S158R158delAGA---11B.1.1.2840.000107
S158R158GAgaGga11B.1.1.2840.000107
S158R158GAgaGga11B.1.1.2940.001266
S158R158RagAagG11B.1.1.2970.002237
S158R158SagAagC11B.1.1.3060.000438
S158R158delAGA---11B.1.1.3110.000358
S158R158SagAagC11B.1.1.3170.000412
S158R158SagAagT11B.1.1.3180.000302
S158R158GAgaGga11B.1.1.3180.000302
S158R158GAgaGga11B.1.1.3260.001761
S158R158GAgaGga11B.1.1.3620.005618
S158R158RagAagG11B.1.1.370.000193
S158R158SagAagT11B.1.1.4090.002833
S158R158SagAagC11B.1.1.4130.006897
S158R158RAgaCga11B.1.1.4320.001266
S158R158GAgaGga11B.1.1.500.000679
S158R158SagAagC11B.1.1.500.000679
S158R158KaGAaAG11B.1.1.5190.00004
S158R158del1Aga-ga11B.1.1.5260.003546
S158R158del1agAag-11B.1.1.70.000001
S158R158GAgaGga11B.1.1110.001175
S158R158delAGA---11B.1.1400.018868
S158R158GAgaGga11B.1.1420.002899
S158R158GAgaGga11B.1.1430.021277
S158R158GAgaGga11B.1.1570.002985
S158R158KaGaaAa11B.1.1600.000031
S158R158delAGA---11B.1.160.230.004831
S158R158delAGA---11B.1.177.160.000664
S158R158TaGaaCa11B.1.177.230.003236
S158R158GAgaGga11B.1.177.330.001645
S158R158delAGA---11B.1.177.40.000211
S158R158RagAagG11B.1.177.420.000894
S158R158GAgaGga11B.1.177.430.001477
S158R158delAGA---11B.1.177.60.000977
S158R158delAGA---11B.1.177.620.001192
S158R158GAgaGga11B.1.177.70.000165
S158R158GAgaGga11B.1.177.730.000566
S158R158delAGA---11B.1.177.870.000728
S158R158GAgaGga11B.1.2060.000816
S158R158delAGA---11B.1.2180.005155
S158R158SagAagC11B.1.2320.000537
S158R158GAgaGga11B.1.2400.000216
S158R158GAgaGga11B.1.2410.000812
S158R158SagAagC11B.1.2410.000812
S158R158GAgaGga11B.1.2430.00007
S158R158delAGA---11B.1.2580.000067
S158R158RagAagG11B.1.3320.003497
S158R158KaGaaAa11B.1.3510.00003
S158R158GAgaGga11B.1.3510.00003
S158R158GAgaGga11B.1.360.000146
S158R158SagAagC11B.1.36.100.004785
S158R158IaGaaTa11B.1.36.170.000494
S158R158delAGA---11B.1.36.180.00042
S158R158del1Aga-ga11B.1.36.290.000517
S158R158GAgaGga11B.1.3620.001541
S158R158GAgaGga11B.1.3660.004878
S158R158SagAagC11B.1.3750.00082
S158R158GAgaGga11B.1.3970.004854
S158R158KaGaaAa11B.1.3990.001934
S158R158delAGA---11B.1.4150.014286
S158R158GAgaGga11B.1.4270.00005
S158R158SagAagT11B.1.4270.00005
S158R158IaGaaTa11B.1.4270.00005
S158R158delAGA---11B.1.4270.00005
S158R158RagAagG11B.1.4290.000024
S158R158GAgaGga11B.1.4290.000024
S158R158GAgaGga11B.1.4320.011236
S158R158SagAagC11B.1.4360.001029
S158R158RAgaCga11B.1.438.10.000107
S158R158GAgaGga11B.1.438.10.000107
S158R158GAgaGga11B.1.4590.004082
S158R158GAgaGga11B.1.466.20.000391
S158R158RagAagG11B.1.4700.001404
S158R158GAgaGga11B.1.4850.014925
S158R158RagAagG11B.1.4920.007042
S158R158delAGA---11B.1.5240.001406
S158R158KaGaaAa11B.1.5250.000113
S158R158IaGaaTa11B.1.5250.000113
S158R158delAGA---11B.1.5250.000113
S158R158SagAagC11B.1.5250.000113
S158R158SagAagC11B.1.5260.000024
S158R158GAgaGga11B.1.5260.000024
S158R158GAgaGga11B.1.5510.00129
S158R158delAGA---11B.1.5610.000397
S158R158TaGAaCC11B.1.5740.002151
S158R158SagAagC11B.1.5750.000303
S158R158LAGaTTa11B.1.5760.000907
S158R158KaGaaAa11B.1.5760.000907
S158R158IaGaaTa11B.1.5760.000907
S158R158XAGaTAa11B.1.5760.000907
S158R158GAgaGga11B.1.5770.000687
S158R158GAgaGga11B.1.5800.004065
S158R158IaGaaTa11B.1.5820.000491
S158R158SagAagT11B.1.5820.000491
S158R158GAgaGga11B.1.5960.000087
S158R158SagAagC11B.1.5960.000087
S158R158SagAagC11B.1.617.10.000129
S158R158delAGA---11B.1.617.10.000129
S158R158QAGaCAa11B.1.617.10.000129
S158R158IaGaaTa11B.1.617.20.000004
S158R158del1Aga-ga11B.1.617.30.002985
S158R158SagAagC11B.1.6190.000871
S158R158delAGA---11B.1.6200.000946
S158R158del1AgA-gN11B.1.6210.000089
S158R158delAGA---11B.1.621.10.000506
S158R158GAgaGga11B.1.621.10.000506
S158R158GAgaGga11B.1.6250.002353
S158R158GAgaGga11B.1.6290.013333
S158R158GAgaGga11B.1.6300.005236
S158R158GAgaGga11B.1.6310.003367
S158R158IaGAaTC11B.1.6310.003367
S158R158IaGaaTa11B.1.6370.000073
S158R158SagAagT11B.1.6370.000073
S158R158delAGA---11B.1.6380.052632
S158R158GAgaGga11B.130.045455
S158R158GAgaGga11B.400.000364
S158R158SagAagC11B.580.010204
S158R158GAgaGga11C.370.000116
S158R158GAgaGga11C.37.10.002618
S158R158IaGaaTa11D.20.000075
S158R158IaGaaTa11N.40.004255
S158R158delAGA---11P.1.10.000318
S158R158XAgaTga11P.1.100.000269
S158R158GAgaGga11P.1.100.000269
S158R158IaGaaTa11P.1.100.000269
S158R158SagAagC11P.1.100.000269
S158R158del1Aga-ga11P.1.120.000484
S158R158GAgaGga11P.1.120.000484
S158R158GAgaGga11P.1.17.10.000875
S158R158GAgaGga11P.1.40.000977
S158R158GAgaGga11P.1.70.000319
S158R158SagAagT11P.20.000187
S158R158GAgaGga11P.50.013699
S158R158GAgaGga11P.70.004367
S158R158SagAagC11Q.80.000165
S158R158GAgaGga11Q.80.000165
S158R158RagAagG11R.10.00009