CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 157 & Codon = GtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S157F157VnonsynTtCGtT2922670.91438422031-22033

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S157F157VTtCGtT267292All0.000051
S157F157VTtCGtT118120AY.1130.016802
S157F157VTtCGtT3030AY.250.00018
S157F157VTtCGtT2123AY.40.000033
S157F157VTtCGtT2022B.1.617.20.000075
S157F157VTtCGtT1818AY.260.00051
S157F157VTtCGtT88AY.30.00008
S157F157VTtCGtT66AY.1180.000376
S157F157VTtCGtT66AY.430.000027
S157F157VTtCGtT55AY.1010.002452
S157F157VTtCGtT25B.1.10.000036
S157F157VTtCGtT44AY.1030.000025
S157F157VTtCGtT44AY.440.000024
S157F157VTtCGtT14B.1.1.70.000001
S157F157VTtCGtT33AY.1190.000106
S157F157VTtCGtT33AY.200.000117
S157F157VTtCGtT33AY.690.00056
S157F157VTtCGtT33AY.750.000168
S157F157VTtCGtT13B.1.1770.000013
S157F157VTtCGtT12AY.1170.000085
S157F157VTtCGtT22AY.540.000191
S157F157VTtCGtT12AY.610.000105
S157F157VTtCGtT12B.10.000009
S157F157VTtCGtT12P.10.000016
S157F157VTtCGtT11AY.1020.000027
S157F157VTtCGtT11AY.380.000499
S157F157VTtCGtT11AY.390.000025
S157F157VTtCGtT11AY.50.000021
S157F157VTtCGtT11AY.700.000209

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.