CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 152 | W152R | nonsyn | Tgg | Cgg | 21934 | 2197 | 0.100164 | 22016-22018 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 152 | W152R | Tgg | Cgg | 2197 | 21934 | All | 0.00042 |
S | 152 | W152R | Tgg | Cgg | 879 | 17746 | B.1.1.7 | 0.000787 |
S | 152 | W152R | Tgg | Cgg | 327 | 328 | AY.103 | 0.00203 |
S | 152 | W152R | Tgg | Cgg | 3 | 326 | C.36.3.1 | 0.008152 |
S | 152 | W152R | Tgg | Cgg | 226 | 316 | AY.4 | 0.000352 |
S | 152 | W152R | Tgg | Cgg | 198 | 198 | B.1.111 | 0.232667 |
S | 152 | W152R | Tgg | Cgg | 57 | 99 | B.1 | 0.000522 |
S | 152 | W152R | Tgg | Cgg | 1 | 90 | A.2.5 | 0.000499 |
S | 152 | W152R | Tgg | Cgg | 84 | 84 | B.1.234 | 0.011083 |
S | 152 | W152R | Tgg | Cgg | 56 | 58 | B.1.1.318 | 0.016898 |
S | 152 | W152R | Tgg | Cgg | 25 | 42 | B.1.1 | 0.000454 |
S | 152 | W152R | Tgg | Cgg | 29 | 35 | B.1.2 | 0.000255 |
S | 152 | W152R | Tgg | Cgg | 2 | 35 | C.36 | 0.001821 |
S | 152 | W152R | Tgg | Cgg | 30 | 33 | B.1.1.294 | 0.037975 |
S | 152 | W152R | Tgg | Cgg | 9 | 32 | B.1.621 | 0.000797 |
S | 152 | W152R | Tgg | Cgg | 1 | 29 | B.1.637 | 0.000073 |
S | 152 | W152R | Tgg | Cgg | 5 | 27 | AY.43 | 0.000022 |
S | 152 | W152R | Tgg | Cgg | 27 | 27 | B.1.1.214 | 0.001497 |
S | 152 | W152R | Tgg | Cgg | 24 | 24 | C.1.2 | 0.102128 |
S | 152 | W152R | Tgg | Cgg | 16 | 21 | B.1.617.2 | 0.00006 |
S | 152 | W152R | Tgg | Cgg | 13 | 20 | AY.44 | 0.000079 |
S | 152 | W152R | Tgg | Cgg | 14 | 15 | B.1.160 | 0.000437 |
S | 152 | W152R | Tgg | Cgg | 3 | 13 | B.1.177 | 0.00004 |
S | 152 | W152R | Tgg | Cgg | 7 | 11 | P.1 | 0.00011 |
S | 152 | W152R | Tgg | Cgg | 11 | 11 | Q.4 | 0.005002 |
S | 152 | W152R | Tgg | Cgg | 9 | 9 | B.1.560 | 0.041667 |
S | 152 | W152R | Tgg | Cgg | 9 | 9 | B.1.638 | 0.473684 |
S | 152 | W152R | Tgg | Cgg | 8 | 8 | B.1.177.60 | 0.001747 |
S | 152 | W152R | Tgg | Cgg | 8 | 8 | B.1.596 | 0.000697 |
S | 152 | W152R | Tgg | Cgg | 6 | 7 | AY.20 | 0.000233 |
S | 152 | W152R | Tgg | Cgg | 6 | 6 | B.1.625 | 0.014118 |
S | 152 | W152R | Tgg | Cgg | 6 | 6 | C.32 | 0.139535 |
S | 152 | W152R | Tgg | Cgg | 1 | 6 | C.35 | 0.000774 |
S | 152 | W152R | Tgg | Cgg | 5 | 5 | AY.25 | 0.00003 |
S | 152 | W152R | Tgg | Cgg | 1 | 5 | B.1.243 | 0.00007 |
S | 152 | W152R | Tgg | Cgg | 4 | 5 | B.1.409 | 0.003125 |
S | 152 | W152R | Tgg | Cgg | 3 | 5 | B.1.525 | 0.000339 |
S | 152 | W152R | Tgg | Cgg | 3 | 4 | AY.26 | 0.000085 |
S | 152 | W152R | Tgg | Cgg | 3 | 4 | AY.4.2 | 0.000065 |
S | 152 | W152R | Tgg | Cgg | 4 | 4 | B.1.1.216 | 0.003562 |
S | 152 | W152R | Tgg | Cgg | 4 | 4 | B.1.177.85 | 0.021739 |
S | 152 | W152R | Tgg | Cgg | 1 | 4 | B.1.526 | 0.000024 |
S | 152 | W152R | Tgg | Cgg | 3 | 3 | AY.29 | 0.000047 |
S | 152 | W152R | Tgg | Cgg | 1 | 3 | AY.3 | 0.00001 |
S | 152 | W152R | Tgg | Cgg | 3 | 3 | AY.36 | 0.000445 |
S | 152 | W152R | Tgg | Cgg | 3 | 3 | AY.39 | 0.000074 |
S | 152 | W152R | Tgg | Cgg | 1 | 3 | AY.46.6 | 0.000072 |
S | 152 | W152R | Tgg | Cgg | 1 | 3 | B.1.1.1 | 0.000327 |
S | 152 | W152R | Tgg | Cgg | 1 | 3 | B.1.595 | 0.000261 |
S | 152 | W152R | Tgg | Cgg | 3 | 3 | B.1.621.1 | 0.001517 |
S | 152 | W152R | Tgg | Cgg | 2 | 2 | A | 0.000774 |
S | 152 | W152R | Tgg | Cgg | 1 | 2 | AY.117 | 0.000085 |
S | 152 | W152R | Tgg | Cgg | 2 | 2 | AY.24 | 0.000862 |
S | 152 | W152R | Tgg | Cgg | 2 | 2 | AY.29.1 | 0.000441 |
S | 152 | W152R | Tgg | Cgg | 2 | 2 | AY.93 | 0.000546 |
S | 152 | W152R | Tgg | Cgg | 1 | 2 | AY.99.2 | 0.000092 |
S | 152 | W152R | Tgg | Cgg | 2 | 2 | B | 0.000256 |
S | 152 | W152R | Tgg | Cgg | 2 | 2 | B.1.1.174 | 0.006757 |
S | 152 | W152R | Tgg | Cgg | 1 | 2 | B.1.311 | 0.000275 |
S | 152 | W152R | Tgg | Cgg | 2 | 2 | B.1.568 | 0.002222 |
S | 152 | W152R | Tgg | Cgg | 1 | 2 | B.1.609 | 0.000479 |
S | 152 | W152R | Tgg | Cgg | 1 | 2 | P.1.14 | 0.000048 |
S | 152 | W152R | Tgg | Cgg | 1 | 2 | Q.8 | 0.000165 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | A.1 | 0.000282 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.12 | 0.000316 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.121 | 0.000135 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.23.1 | 0.000417 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.27 | 0.000065 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.33 | 0.000067 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.46 | 0.000104 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.48 | 0.000465 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.5 | 0.000021 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.55 | 0.000917 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.56 | 0.001605 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.61 | 0.000105 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AY.69 | 0.000187 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | AZ.2 | 0.000821 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.1.25 | 0.000569 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.1.306 | 0.000438 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.1.33 | 0.000421 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.1.398 | 0.003226 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.1.54 | 0.003021 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.1.70 | 0.000341 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.128 | 0.000635 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.160.9 | 0.007194 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.177.12 | 0.000152 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.177.75 | 0.001041 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.177.76 | 0.002494 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.240 | 0.000216 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.36 | 0.000146 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.36.19 | 0.009259 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.499 | 0.00105 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.576 | 0.000907 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | B.1.94 | 0.027027 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | P.1.1 | 0.000318 |
S | 152 | W152R | Tgg | Cgg | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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