CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 149

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S149N149NsynaaCaaT10541054122007-22009
S149N149deldelAAC---328328122007-22009
S149N149InonsynaAcaTc7676122007-22009
S149N149KnonsynaaCaaA76700.92105322007-22009
S149N149KnonsynaaCaaG7660.078947422007-22009
S149N149DnonsynAacGac59580.98305122007-22009
S149N149DnonsynAaCGaT5910.016949222007-22009
S149N149SnonsynaAcaGc58560.96551722007-22009
S149N149YnonsynAacTac58560.96551722007-22009
S149N149YnonsynAaCTaT5820.034482822007-22009
S149N149SnonsynAACTCT5810.017241422007-22009
S149N149SnonsynAAcTCc5810.017241422007-22009
S149N149TnonsynaAcaCc36330.91666722007-22009
S149N149TnonsynaACaCA3620.055555622007-22009
S149N149TnonsynaACaCT3610.027777822007-22009
S149N149HnonsynAacCac1212122007-22009
S149N149del1delaaCaa-1050.522007-22009
S149N149del1delAac-ac1040.422007-22009
S149N149del1delAaC-aN1010.122007-22009
S149N149QnonsynAaCCaA33122007-22009
S149N149del2delaACa--320.66666722007-22009
S149N149del2delAAC--T310.33333322007-22009
S149N149EnonsynAaCGaA11122007-22009
S149N149XnonsynAaCTaA11122007-22009
S149N149LnonsynAAcCTc11122007-22009
S149N149FnonsynAAcTTc11122007-22009
S149N149GnonsynAAcGGc11122007-22009

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S149N149NaaCaaT10541054All0.000202
S149N149NaaCaaT363363B.1.1.70.000325
S149N149delAAC---328328All0.000063
S149N149IaAcaTc7676All0.000015
S149N149KaaCaaA7076All0.000013
S149N149KaaCaaG676All0.000001
S149N149NaaCaaT7171B.1.5880.064604
S149N149IaAcaTc6767B.1.1.70.00006
S149N149delAAC---6060AY.40.000093
S149N149DAacGac5859All0.000011
S149N149DAaCGaT159All0
S149N149SaAcaGc5658All0.000011
S149N149YAacTac5658All0.000011
S149N149YAaCTaT258All0
S149N149SAACTCT158All0
S149N149SAAcTCc158All0
S149N149NaaCaaT4343AY.40.000067
S149N149delAAC---4242AY.430.000186
S149N149TaAcaCc3336All0.000006
S149N149TaACaCA236All0
S149N149TaACaCT136All0
S149N149NaaCaaT3434AY.3.10.002899
S149N149NaaCaaT3434AY.440.000207
S149N149NaaCaaT3333AY.390.000815
S149N149NaaCaaT3131B.1.617.20.000117
S149N149NaaCaaT2929AY.250.000174
S149N149NaaCaaT2929B.10.000266
S149N149NaaCaaT2727AY.430.00012
S149N149NaaCaaT2727B.1.10.00049
S149N149SaAcaGc2727B.1.1.70.000024
S149N149delAAC---2525B.1.1.70.000022
S149N149NaaCaaT2323AY.1030.000143
S149N149NaaCaaT2121AY.4.20.000455
S149N149NaaCaaT2020AY.30.000199
S149N149delAAC---2020B.1.5260.00047
S149N149delAAC---1919AY.250.000114
S149N149NaaCaaT1919B.1.617.10.00245
S149N149YAacTac1818B.1.1.70.000016
S149N149NaaCaaT1818B.1.20.000158
S149N149TaAcaCc1616B.1.6250.037647
S149N149delAAC---1515B.1.617.20.000056
S149N149delAAC---1414AY.4.20.000304
S149N149KaaCaaA1414B.1.6210.001239
S149N149HAacCac1212All0.000002
S149N149delAAC---1212AY.1020.000318
S149N149YAacTac1111B.10.000101
S149N149KaaCaaA911B.1.1.70.000008
S149N149KaaCaaG211B.1.1.70.000002
S149N149del1aaCaa-510All0.000001
S149N149del1Aac-ac410All0.000001
S149N149del1AaC-aN110All0
S149N149NaaCaaT1010AY.200.000389
S149N149NaaCaaT1010AY.270.000647
S149N149delAAC---1010AY.420.000402
S149N149NaaCaaT1010P.1.140.000478
S149N149DAacGac99B.10.000082
S149N149DAacGac99B.1.1.70.000008
S149N149NaaCaaT99B.1.5960.000784
S149N149NaaCaaT99P.1.150.002091
S149N149KaaCaaA88AY.430.000035
S149N149delAAC---88AY.440.000049
S149N149NaaCaaT88P.10.000126
S149N149SaAcaGc66AY.1200.000223
S149N149TaAcaCc66AY.200.000233
S149N149YAacTac66AY.40.000009
S149N149NaaCaaT66B.1.1770.000079
S149N149NaaCaaT55AT.10.025641
S149N149NaaCaaT55AY.1170.000423
S149N149NaaCaaT55AY.4.2.10.000745
S149N149delAAC---55AY.4.50.000537
S149N149NaaCaaT55AY.470.000156
S149N149NaaCaaT55AY.750.00028
S149N149NaaCaaT55AY.9.20.000184
S149N149NaaCaaT55B.1.1.700.001705
S149N149YAacTac55B.1.1770.000066
S149N149delAAC---55B.1.6210.000443
S149N149NaaCaaT44AY.1130.00057
S149N149KaaCaaA44AY.200.000155
S149N149NaaCaaT44AY.290.000063
S149N149NaaCaaT44AY.4.40.001637
S149N149SaAcaGc44B.10.000037
S149N149delAAC---44B.1.1770.000053
S149N149NaaCaaT44B.1.2320.002149
S149N149NaaCaaT44B.1.4290.000094
S149N149NaaCaaT44C.350.003096
S149N149KaaCaaA44P.10.000063
S149N149QAaCCaA33All0.000001
S149N149del2aACa--23All0
S149N149del2AAC--T13All0
S149N149NaaCaaT33AY.1020.00008
S149N149HAacCac33AY.1020.00008
S149N149delAAC---33AY.1190.000106
S149N149delAAC---33AY.1200.000112
S149N149DAacGac33AY.200.000117
S149N149KaaCaaA33AY.250.000018
S149N149NaaCaaT33AY.330.0002
S149N149NaaCaaT33AY.350.000699
S149N149delAAC---33AY.390.000074
S149N149SaAcaGc33AY.40.000005
S149N149DAacGac23AY.40.000003
S149N149KaaCaaA23AY.40.000003
S149N149del1Aac-ac23AY.40.000003
S149N149DAaCGaT13AY.40.000002
S149N149del1aaCaa-13AY.40.000002
S149N149KaaCaaG13AY.40.000002
S149N149delAAC---33AY.4.2.10.000447
S149N149NaaCaaT33AY.46.60.000217
S149N149NaaCaaT33AY.540.000286
S149N149NaaCaaT33AY.60.000123
S149N149NaaCaaT33AY.75.10.000541
S149N149NaaCaaT33AY.90.000203
S149N149delAAC---33B.10.000027
S149N149KaaCaaA23B.10.000018
S149N149KaaCaaG13B.10.000009
S149N149NaaCaaT33B.1.1.2160.002671
S149N149SaAcaGc33B.1.3510.000089
S149N149delAAC---33B.1.3510.000089
S149N149IaAcaTc33B.1.617.20.000011
S149N149KaaCaaA33B.1.617.20.000011
S149N149SaAcaGc33B.1.617.20.000011
S149N149NaaCaaT33B.1.6210.000266
S149N149NaaCaaT33D.20.000225
S149N149delAAC---33P.10.000047
S149N149delAAC---33P.1.150.000697
S149N149NaaCaaT220.111111
S149N149NaaCaaT22AY.1000.000092
S149N149TaAcaCc22AY.1000.000092
S149N149KaaCaaA22AY.1020.000053
S149N149SAACTCT12AY.1020.000027
S149N149YAacTac12AY.1020.000027
S149N149YAaCTaT12AY.1020.000027
S149N149TaAcaCc12AY.1020.000027
S149N149SAAcTCc12AY.1020.000027
S149N149TaACaCT12AY.1020.000027
S149N149delAAC---22AY.1080.002205
S149N149NaaCaaT22AY.260.000057
S149N149IaAcaTc22AY.290.000032
S149N149delAAC---22AY.29.10.000441
S149N149delAAC---22AY.30.00002
S149N149delAAC---22AY.330.000134
S149N149NaaCaaT22AY.34.10.00102
S149N149NaaCaaT22AY.420.00008
S149N149NaaCaaT22AY.46.40.000329
S149N149DAacGac22AY.470.000062
S149N149delAAC---22AY.50.000041
S149N149NaaCaaT22AY.550.001835
S149N149delAAC---22AY.650.001066
S149N149NaaCaaT22AY.70.000392
S149N149NaaCaaT22AY.700.000417
S149N149NaaCaaT22AY.880.001768
S149N149delAAC---22AY.90.000135
S149N149delAAC---22AY.990.002099
S149N149delAAC---22AY.99.20.000184
S149N149NaaCaaT22AY.99.20.000184
S149N149delAAC---22AZ.50.007018
S149N149HAacCac22B.10.000018
S149N149delAAC---22B.1.10.000036
S149N149SaAcaGc22B.1.1.2040.006079
S149N149delAAC---22B.1.1.3110.000716
S149N149delAAC---22B.1.1.3180.000604
S149N149delAAC---22B.1.177.40.000422
S149N149NaaCaaT22B.1.177.70.00033
S149N149YAacTac22B.1.177.860.000367
S149N149DAacGac22B.1.20.000018
S149N149NaaCaaT22B.1.30.005236
S149N149KaaCaaA22B.1.3440.016393
S149N149NaaCaaT22B.1.36.180.00084
S149N149NaaCaaT22B.1.3930.057143
S149N149NaaCaaT22B.1.5950.000522
S149N149DAacGac22B.1.617.20.000008
S149N149NaaCaaT22C.260.014706
S149N149YAacTac22C.370.000232
S149N149DAacGac22D.20.00015
S149N149DAacGac22P.10.000032
S149N149delAAC---11A0.000387
S149N149YAacTac11A.20.000662
S149N149DAacGac11A.2.40.003367
S149N149delAAC---11A.2.50.000499
S149N149KaaCaaG11A.2.50.000499
S149N149GAAcGGc11All0
S149N149FAAcTTc11All0
S149N149LAAcCTc11All0
S149N149XAaCTaA11All0
S149N149EAaCGaA11All0
S149N149YAacTac11AT.10.005128
S149N149DAacGac11AY.1000.000046
S149N149delAAC---11AY.1000.000046
S149N149DAacGac11AY.1020.000027
S149N149del1AaC-aN11AY.1030.000006
S149N149delAAC---11AY.1030.000006
S149N149TaAcaCc11AY.1030.000006
S149N149YAaCTaT11AY.1030.000006
S149N149delAAC---11AY.1070.000466
S149N149delAAC---11AY.1090.00074
S149N149SaAcaGc11AY.1100.000113
S149N149NaaCaaT11AY.1100.000113
S149N149DAacGac11AY.1110.000183
S149N149delAAC---11AY.1180.000063
S149N149SaAcaGc11AY.1190.000035
S149N149NaaCaaT11AY.1190.000035
S149N149NaaCaaT11AY.1200.000037
S149N149delAAC---11AY.120.20.001285
S149N149delAAC---11AY.1210.000135
S149N149HAacCac11AY.200.000039
S149N149delAAC---11AY.210.001898
S149N149DAacGac11AY.230.00007
S149N149SaAcaGc11AY.230.00007
S149N149DAacGac11AY.23.10.000417
S149N149KaaCaaA11AY.240.000431
S149N149DAacGac11AY.250.000006
S149N149TaAcaCc11AY.250.000006
S149N149KaaCaaA11AY.260.000028
S149N149delAAC---11AY.270.000065
S149N149delAAC---11AY.290.000016
S149N149DAacGac11AY.29.10.000221
S149N149SaAcaGc11AY.30.00001
S149N149KaaCaaA11AY.300.000396
S149N149del1aaCaa-11AY.340.000097
S149N149NaaCaaT11AY.360.000148
S149N149IaAcaTc11AY.360.000148
S149N149NaaCaaT11AY.39.10.00004
S149N149delAAC---11AY.39.10.00004
S149N149EAaCGaA11AY.40.000002
S149N149HAacCac11AY.40.000002
S149N149IaAcaTc11AY.40.000002
S149N149TaACaCA11AY.40.000002
S149N149del2AAC--T11AY.40.000002
S149N149LAAcCTc11AY.40.000002
S149N149delAAC---11AY.4.10.000737
S149N149IaAcaTc11AY.4.50.000107
S149N149NaaCaaT11AY.4.50.000107
S149N149KaaCaaA11AY.420.00004
S149N149DAacGac11AY.430.000004
S149N149TaAcaCc11AY.430.000004
S149N149DAacGac11AY.440.000006
S149N149KaaCaaA11AY.440.000006
S149N149TaACaCA11AY.440.000006
S149N149NaaCaaT11AY.46.50.000198
S149N149delAAC---11AY.46.60.000072
S149N149KaaCaaA11AY.46.60.000072
S149N149NaaCaaT11AY.50.000021
S149N149delAAC---11AY.5.30.000337
S149N149NaaCaaT11AY.560.001605
S149N149NaaCaaT11AY.570.000656
S149N149KaaCaaA11AY.590.00053
S149N149delAAC---11AY.600.000938
S149N149delAAC---11AY.620.000436
S149N149NaaCaaT11AY.650.000533
S149N149NaaCaaT11AY.670.000464
S149N149NaaCaaT11AY.680.000274
S149N149KaaCaaA11AY.680.000274
S149N149NaaCaaT11AY.690.000187
S149N149YAacTac11AY.7.10.000113
S149N149delAAC---11AY.7.20.000559
S149N149del1aaCaa-11AY.700.000209
S149N149delAAC---11AY.730.000665
S149N149DAacGac11AY.770.001127
S149N149SaAcaGc11AY.810.001992
S149N149delAAC---11AY.840.000437
S149N149delAAC---11AY.850.000427
S149N149del2aACa--11AY.90.000068
S149N149KaaCaaG11AY.9.20.000037
S149N149NaaCaaT11AY.910.00073
S149N149NaaCaaT11AY.940.000443
S149N149DAacGac11AY.960.002075
S149N149NaaCaaT11AY.980.000079
S149N149delAAC---11AY.98.10.000048
S149N149delAAC---11AY.99.10.001553
S149N149DAacGac11AZ.10.000867
S149N149delAAC---11AZ.20.000821
S149N149DAacGac11AZ.40.003356
S149N149TaAcaCc11B.10.000009
S149N149QAaCCaA11B.10.000009
S149N149SaAcaGc11B.1.10.000018
S149N149FAAcTTc11B.1.10.000018
S149N149delAAC---11B.1.1.1390.022727
S149N149del2aACa--11B.1.1.1590.004673
S149N149NaaCaaT11B.1.1.1640.005155
S149N149NaaCaaT11B.1.1.1890.001513
S149N149NaaCaaT11B.1.1.2140.000055
S149N149SaAcaGc11B.1.1.2140.000055
S149N149NaaCaaT11B.1.1.2220.000204
S149N149SaAcaGc11B.1.1.2220.000204
S149N149delAAC---11B.1.1.2840.000107
S149N149NaaCaaT11B.1.1.330.000421
S149N149NaaCaaT11B.1.1.340.013158
S149N149NaaCaaT11B.1.1.3720.000689
S149N149NaaCaaT11B.1.1.4340.000349
S149N149YAacTac11B.1.1.4640.001473
S149N149NaaCaaT11B.1.1.500.000679
S149N149KaaCaaA11B.1.1.5190.00004
S149N149NaaCaaT11B.1.1.5190.00004
S149N149HAacCac11B.1.1.70.000001
S149N149QAaCCaA11B.1.1.70.000001
S149N149del1Aac-ac11B.1.1.70.000001
S149N149NaaCaaT11B.1.130.002375
S149N149NaaCaaT11B.1.1370.5
S149N149NaaCaaT11B.1.1600.000031
S149N149delAAC---11B.1.1600.000031
S149N149DAacGac11B.1.1600.000031
S149N149delAAC---11B.1.160.230.004831
S149N149KaaCaaA11B.1.1770.000013
S149N149YAacTac11B.1.177.120.000152
S149N149del1aaCaa-11B.1.177.160.000664
S149N149DAacGac11B.1.177.330.001645
S149N149NaaCaaT11B.1.177.410.0025
S149N149YAacTac11B.1.177.570.000281
S149N149NaaCaaT11B.1.177.570.000281
S149N149delAAC---11B.1.177.870.000728
S149N149delAAC---11B.1.20.000009
S149N149YAacTac11B.1.20.000009
S149N149HAacCac11B.1.20.000009
S149N149KaaCaaA11B.1.20.000009
S149N149KaaCaaA11B.1.2210.000071
S149N149NaaCaaT11B.1.2340.000132
S149N149TaAcaCc11B.1.2430.00007
S149N149delAAC---11B.1.2430.00007
S149N149NaaCaaT11B.1.258.170.000104
S149N149TaAcaCc11B.1.3320.003497
S149N149NaaCaaT11B.1.3380.008621
S149N149NaaCaaT11B.1.3510.00003
S149N149NaaCaaT11B.1.351.20.000303
S149N149NaaCaaT11B.1.360.000146
S149N149NaaCaaT11B.1.3690.000285
S149N149HAacCac11B.1.3950.007042
S149N149delAAC---11B.1.4150.014286
S149N149TaAcaCc11B.1.4160.001269
S149N149NaaCaaT11B.1.4240.008065
S149N149DAacGac11B.1.4270.00005
S149N149DAacGac11B.1.4290.000024
S149N149DAacGac11B.1.4680.005714
S149N149KaaCaaA11B.1.5250.000113
S149N149DAacGac11B.1.5250.000113
S149N149TaAcaCc11B.1.5260.000024
S149N149IaAcaTc11B.1.5260.000024
S149N149HAacCac11B.1.5260.000024
S149N149DAacGac11B.1.5260.000024
S149N149YAacTac11B.1.5760.000907
S149N149del1aaCaa-11B.1.5960.000087
S149N149YAacTac11B.1.5960.000087
S149N149DAacGac11B.1.617.10.000129
S149N149XAaCTaA11B.1.617.20.000004
S149N149del1Aac-ac11B.1.617.20.000004
S149N149YAacTac11B.1.617.20.000004
S149N149NaaCaaT11B.1.6180.004032
S149N149delAAC---11B.1.6200.000946
S149N149YAacTac11B.1.6210.000089
S149N149DAacGac11B.1.6230.000536
S149N149KaaCaaA11B.1.6250.002353
S149N149KaaCaaA11B.1.6370.000073
S149N149QAaCCaA11B.1.6370.000073
S149N149DAacGac11B.1.6370.000073
S149N149HAacCac11B.1.6370.000073
S149N149GAAcGGc11B.60.00091
S149N149NaaCaaT11B.6.60.000889
S149N149delAAC---11C.360.000911
S149N149KaaCaaA11P.1.10.000318
S149N149NaaCaaT11P.1.120.000484
S149N149DAacGac11P.1.170.000162
S149N149delAAC---11P.30.001595
S149N149delAAC---11Q.20.000613
S149N149NaaCaaT11R.10.00009
S149N149KaaCaaA11R.10.00009