CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 149

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S149N149NsynaaCaaT10541054122007-22009
S149N149deldelAAC---328328122007-22009
S149N149InonsynaAcaTc7676122007-22009
S149N149KnonsynaaCaaA76700.92105322007-22009
S149N149KnonsynaaCaaG7660.078947422007-22009
S149N149DnonsynAacGac59580.98305122007-22009
S149N149DnonsynAaCGaT5910.016949222007-22009
S149N149SnonsynaAcaGc58560.96551722007-22009
S149N149YnonsynAacTac58560.96551722007-22009
S149N149YnonsynAaCTaT5820.034482822007-22009
S149N149SnonsynAACTCT5810.017241422007-22009
S149N149SnonsynAAcTCc5810.017241422007-22009
S149N149TnonsynaAcaCc36330.91666722007-22009
S149N149TnonsynaACaCA3620.055555622007-22009
S149N149TnonsynaACaCT3610.027777822007-22009
S149N149HnonsynAacCac1212122007-22009
S149N149del1delaaCaa-1050.522007-22009
S149N149del1delAac-ac1040.422007-22009
S149N149del1delAaC-aN1010.122007-22009
S149N149QnonsynAaCCaA33122007-22009
S149N149del2delaACa--320.66666722007-22009
S149N149del2delAAC--T310.33333322007-22009
S149N149EnonsynAaCGaA11122007-22009
S149N149XnonsynAaCTaA11122007-22009
S149N149LnonsynAAcCTc11122007-22009
S149N149FnonsynAAcTTc11122007-22009
S149N149GnonsynAAcGGc11122007-22009

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S149N149NaaCaaT10541054All0.000202
S149N149NaaCaaT363363B.1.1.70.000325
S149N149delAAC---328328All0.000063
S149N149IaAcaTc7676All0.000015
S149N149KaaCaaA7076All0.000013
S149N149KaaCaaG676All0.000001
S149N149NaaCaaT7171B.1.5880.064604
S149N149IaAcaTc6767B.1.1.70.00006
S149N149delAAC---6060AY.40.000093
S149N149DAacGac5859All0.000011
S149N149DAaCGaT159All0
S149N149SaAcaGc5658All0.000011
S149N149YAacTac5658All0.000011
S149N149YAaCTaT258All0
S149N149SAACTCT158All0
S149N149SAAcTCc158All0
S149N149NaaCaaT4343AY.40.000067
S149N149delAAC---4242AY.430.000186
S149N149TaAcaCc3336All0.000006
S149N149TaACaCA236All0
S149N149TaACaCT136All0
S149N149NaaCaaT3434AY.3.10.002899
S149N149NaaCaaT3434AY.440.000207
S149N149NaaCaaT3333AY.390.000815
S149N149NaaCaaT3131B.1.617.20.000117
S149N149NaaCaaT2929AY.250.000174
S149N149NaaCaaT2929B.10.000266
S149N149NaaCaaT2727AY.430.00012
S149N149NaaCaaT2727B.1.10.00049
S149N149SaAcaGc2727B.1.1.70.000024
S149N149delAAC---2525B.1.1.70.000022
S149N149NaaCaaT2323AY.1030.000143
S149N149NaaCaaT2121AY.4.20.000455
S149N149NaaCaaT2020AY.30.000199
S149N149delAAC---2020B.1.5260.00047
S149N149delAAC---1919AY.250.000114
S149N149NaaCaaT1919B.1.617.10.00245
S149N149YAacTac1818B.1.1.70.000016
S149N149NaaCaaT1818B.1.20.000158
S149N149TaAcaCc1616B.1.6250.037647
S149N149delAAC---1515B.1.617.20.000056
S149N149delAAC---1414AY.4.20.000304
S149N149KaaCaaA1414B.1.6210.001239
S149N149HAacCac1212All0.000002
S149N149delAAC---1212AY.1020.000318
S149N149YAacTac1111B.10.000101
S149N149KaaCaaA911B.1.1.70.000008
S149N149KaaCaaG211B.1.1.70.000002
S149N149del1aaCaa-510All0.000001
S149N149del1Aac-ac410All0.000001
S149N149del1AaC-aN110All0
S149N149NaaCaaT1010AY.200.000389
S149N149NaaCaaT1010AY.270.000647
S149N149delAAC---1010AY.420.000402
S149N149NaaCaaT1010P.1.140.000478
S149N149DAacGac99B.10.000082
S149N149DAacGac99B.1.1.70.000008
S149N149NaaCaaT99B.1.5960.000784
S149N149NaaCaaT99P.1.150.002091
S149N149KaaCaaA88AY.430.000035
S149N149delAAC---88AY.440.000049
S149N149NaaCaaT88P.10.000126
S149N149SaAcaGc66AY.1200.000223
S149N149TaAcaCc66AY.200.000233
S149N149YAacTac66AY.40.000009
S149N149NaaCaaT66B.1.1770.000079
S149N149NaaCaaT55AT.10.025641
S149N149NaaCaaT55AY.1170.000423
S149N149NaaCaaT55AY.4.2.10.000745
S149N149delAAC---55AY.4.50.000537
S149N149NaaCaaT55AY.470.000156
S149N149NaaCaaT55AY.750.00028
S149N149NaaCaaT55AY.9.20.000184
S149N149NaaCaaT55B.1.1.700.001705
S149N149YAacTac55B.1.1770.000066
S149N149delAAC---55B.1.6210.000443
S149N149NaaCaaT44AY.1130.00057
S149N149KaaCaaA44AY.200.000155
S149N149NaaCaaT44AY.290.000063
S149N149NaaCaaT44AY.4.40.001637
S149N149SaAcaGc44B.10.000037
S149N149delAAC---44B.1.1770.000053
S149N149NaaCaaT44B.1.2320.002149
S149N149NaaCaaT44B.1.4290.000094
S149N149NaaCaaT44C.350.003096
S149N149KaaCaaA44P.10.000063
S149N149QAaCCaA33All0.000001
S149N149del2aACa--23All0
S149N149del2AAC--T13All0
S149N149NaaCaaT33AY.1020.00008
S149N149HAacCac33AY.1020.00008
S149N149delAAC---33AY.1190.000106
S149N149delAAC---33AY.1200.000112
S149N149DAacGac33AY.200.000117
S149N149KaaCaaA33AY.250.000018
S149N149NaaCaaT33AY.330.0002
S149N149NaaCaaT33AY.350.000699
S149N149delAAC---33AY.390.000074
S149N149SaAcaGc33AY.40.000005
S149N149DAacGac23AY.40.000003
S149N149KaaCaaA23AY.40.000003
S149N149del1Aac-ac23AY.40.000003
S149N149DAaCGaT13AY.40.000002
S149N149del1aaCaa-13AY.40.000002
S149N149KaaCaaG13AY.40.000002
S149N149delAAC---33AY.4.2.10.000447
S149N149NaaCaaT33AY.46.60.000217
S149N149NaaCaaT33AY.540.000286
S149N149NaaCaaT33AY.60.000123
S149N149NaaCaaT33AY.75.10.000541
S149N149NaaCaaT33AY.90.000203
S149N149delAAC---33B.10.000027
S149N149KaaCaaA23B.10.000018
S149N149KaaCaaG13B.10.000009
S149N149NaaCaaT33B.1.1.2160.002671
S149N149SaAcaGc33B.1.3510.000089
S149N149delAAC---33B.1.3510.000089
S149N149IaAcaTc33B.1.617.20.000011
S149N149KaaCaaA33B.1.617.20.000011
S149N149SaAcaGc33B.1.617.20.000011
S149N149NaaCaaT33B.1.6210.000266
S149N149NaaCaaT33D.20.000225
S149N149delAAC---33P.10.000047
S149N149delAAC---33P.1.150.000697
S149N149NaaCaaT220.111111
S149N149NaaCaaT22AY.1000.000092
S149N149TaAcaCc22AY.1000.000092
S149N149KaaCaaA22AY.1020.000053
S149N149SAACTCT12AY.1020.000027
S149N149YAacTac12AY.1020.000027
S149N149YAaCTaT12AY.1020.000027
S149N149TaAcaCc12AY.1020.000027
S149N149SAAcTCc12AY.1020.000027
S149N149TaACaCT12AY.1020.000027
S149N149delAAC---22AY.1080.002205
S149N149NaaCaaT22AY.260.000057
S149N149IaAcaTc22AY.290.000032
S149N149delAAC---22AY.29.10.000441
S149N149delAAC---22AY.30.00002
S149N149delAAC---22AY.330.000134
S149N149NaaCaaT22AY.34.10.00102
S149N149NaaCaaT22AY.420.00008
S149N149NaaCaaT22AY.46.40.000329
S149N149DAacGac22AY.470.000062
S149N149delAAC---22AY.50.000041
S149N149NaaCaaT22AY.550.001835
S149N149delAAC---22AY.650.001066
S149N149NaaCaaT22AY.70.000392
S149N149NaaCaaT22AY.700.000417
S149N149NaaCaaT22AY.880.001768
S149N149delAAC---22AY.90.000135
S149N149delAAC---22AY.990.002099
S149N149delAAC---22AY.99.20.000184
S149N149NaaCaaT22AY.99.20.000184
S149N149delAAC---22AZ.50.007018
S149N149HAacCac22B.10.000018
S149N149delAAC---22B.1.10.000036
S149N149SaAcaGc22B.1.1.2040.006079
S149N149delAAC---22B.1.1.3110.000716
S149N149delAAC---22B.1.1.3180.000604
S149N149delAAC---22B.1.177.40.000422
S149N149NaaCaaT22B.1.177.70.00033
S149N149YAacTac22B.1.177.860.000367
S149N149DAacGac22B.1.20.000018
S149N149NaaCaaT22B.1.30.005236
S149N149KaaCaaA22B.1.3440.016393
S149N149NaaCaaT22B.1.36.180.00084
S149N149NaaCaaT22B.1.3930.057143
S149N149NaaCaaT22B.1.5950.000522
S149N149DAacGac22B.1.617.20.000008
S149N149NaaCaaT22C.260.014706
S149N149YAacTac22C.370.000232
S149N149DAacGac22D.20.00015
S149N149DAacGac22P.10.000032
S149N149delAAC---11A0.000387
S149N149YAacTac11A.20.000662
S149N149DAacGac11A.2.40.003367
S149N149delAAC---11A.2.50.000499
S149N149KaaCaaG11A.2.50.000499
S149N149GAAcGGc11All0
S149N149FAAcTTc11All0
S149N149LAAcCTc11All0
S149N149XAaCTaA11All0
S149N149EAaCGaA11All0
S149N149YAacTac11AT.10.005128
S149N149DAacGac11AY.1000.000046
S149N149delAAC---11AY.1000.000046
S149N149DAacGac11AY.1020.000027
S149N149del1AaC-aN11AY.1030.000006
S149N149delAAC---11AY.1030.000006
S149N149TaAcaCc11AY.1030.000006
S149N149YAaCTaT11AY.1030.000006
S149N149delAAC---11AY.1070.000466
S149N149delAAC---11AY.1090.00074
S149N149SaAcaGc11AY.1100.000113
S149N149NaaCaaT11AY.1100.000113
S149N149DAacGac11AY.1110.000183
S149N149delAAC---11AY.1180.000063
S149N149SaAcaGc11AY.1190.000035
S149N149NaaCaaT11AY.1190.000035
S149N149NaaCaaT11AY.1200.000037
S149N149delAAC---11AY.120.20.001285
S149N149delAAC---11AY.1210.000135
S149N149HAacCac11AY.200.000039
S149N149delAAC---11AY.210.001898
S149N149DAacGac11AY.230.00007
S149N149SaAcaGc11AY.230.00007
S149N149DAacGac11AY.23.10.000417
S149N149KaaCaaA11AY.240.000431
S149N149DAacGac11AY.250.000006
S149N149TaAcaCc11AY.250.000006
S149N149KaaCaaA11AY.260.000028
S149N149delAAC---11AY.270.000065
S149N149delAAC---11AY.290.000016
S149N149DAacGac11AY.29.10.000221
S149N149SaAcaGc11AY.30.00001
S149N149KaaCaaA11AY.300.000396
S149N149del1aaCaa-11AY.340.000097
S149N149NaaCaaT11AY.360.000148
S149N149IaAcaTc11AY.360.000148
S149N149NaaCaaT11AY.39.10.00004
S149N149delAAC---11AY.39.10.00004
S149N149EAaCGaA11AY.40.000002
S149N149HAacCac11AY.40.000002
S149N149IaAcaTc11AY.40.000002
S149N149TaACaCA11AY.40.000002
S149N149del2AAC--T11AY.40.000002
S149N149LAAcCTc11AY.40.000002
S149N149delAAC---11AY.4.10.000737
S149N149IaAcaTc11AY.4.50.000107
S149N149NaaCaaT11AY.4.50.000107
S149N149KaaCaaA11AY.420.00004
S149N149DAacGac11AY.430.000004
S149N149TaAcaCc11AY.430.000004
S149N149DAacGac11AY.440.000006
S149N149KaaCaaA11AY.440.000006
S149N149TaACaCA11AY.440.000006
S149N149NaaCaaT11AY.46.50.000198
S149N149delAAC---11AY.46.60.000072
S149N149KaaCaaA11AY.46.60.000072
S149N149NaaCaaT11AY.50.000021
S149N149delAAC---11AY.5.30.000337
S149N149NaaCaaT11AY.560.001605
S149N149NaaCaaT11AY.570.000656
S149N149KaaCaaA11AY.590.00053
S149N149delAAC---11AY.600.000938
S149N149delAAC---11AY.620.000436
S149N149NaaCaaT11AY.650.000533
S149N149NaaCaaT11AY.670.000464
S149N149NaaCaaT11AY.680.000274
S149N149KaaCaaA11AY.680.000274
S149N149NaaCaaT11AY.690.000187
S149N149YAacTac11AY.7.10.000113
S149N149delAAC---11AY.7.20.000559
S149N149del1aaCaa-11AY.700.000209
S149N149delAAC---11AY.730.000665
S149N149DAacGac11AY.770.001127
S149N149SaAcaGc11AY.810.001992
S149N149delAAC---11AY.840.000437
S149N149delAAC---11AY.850.000427
S149N149del2aACa--11AY.90.000068
S149N149KaaCaaG11AY.9.20.000037
S149N149NaaCaaT11AY.910.00073
S149N149NaaCaaT11AY.940.000443
S149N149DAacGac11AY.960.002075
S149N149NaaCaaT11AY.980.000079
S149N149delAAC---11AY.98.10.000048
S149N149delAAC---11AY.99.10.001553
S149N149DAacGac11AZ.10.000867
S149N149delAAC---11AZ.20.000821
S149N149DAacGac11AZ.40.003356
S149N149TaAcaCc11B.10.000009
S149N149QAaCCaA11B.10.000009
S149N149SaAcaGc11B.1.10.000018
S149N149FAAcTTc11B.1.10.000018
S149N149delAAC---11B.1.1.1390.022727
S149N149del2aACa--11B.1.1.1590.004673
S149N149NaaCaaT11B.1.1.1640.005155
S149N149NaaCaaT11B.1.1.1890.001513
S149N149NaaCaaT11B.1.1.2140.000055
S149N149SaAcaGc11B.1.1.2140.000055
S149N149NaaCaaT11B.1.1.2220.000204
S149N149SaAcaGc11B.1.1.2220.000204
S149N149delAAC---11B.1.1.2840.000107
S149N149NaaCaaT11B.1.1.330.000421
S149N149NaaCaaT11B.1.1.340.013158
S149N149NaaCaaT11B.1.1.3720.000689
S149N149NaaCaaT11B.1.1.4340.000349
S149N149YAacTac11B.1.1.4640.001473
S149N149NaaCaaT11B.1.1.500.000679
S149N149KaaCaaA11B.1.1.5190.00004
S149N149NaaCaaT11B.1.1.5190.00004
S149N149HAacCac11B.1.1.70.000001
S149N149QAaCCaA11B.1.1.70.000001
S149N149del1Aac-ac11B.1.1.70.000001
S149N149NaaCaaT11B.1.130.002375
S149N149NaaCaaT11B.1.1370.5
S149N149NaaCaaT11B.1.1600.000031
S149N149delAAC---11B.1.1600.000031
S149N149DAacGac11B.1.1600.000031
S149N149delAAC---11B.1.160.230.004831
S149N149KaaCaaA11B.1.1770.000013
S149N149YAacTac11B.1.177.120.000152
S149N149del1aaCaa-11B.1.177.160.000664
S149N149DAacGac11B.1.177.330.001645
S149N149NaaCaaT11B.1.177.410.0025
S149N149YAacTac11B.1.177.570.000281
S149N149NaaCaaT11B.1.177.570.000281
S149N149delAAC---11B.1.177.870.000728
S149N149delAAC---11B.1.20.000009
S149N149YAacTac11B.1.20.000009
S149N149HAacCac11B.1.20.000009
S149N149KaaCaaA11B.1.20.000009
S149N149KaaCaaA11B.1.2210.000071
S149N149NaaCaaT11B.1.2340.000132
S149N149TaAcaCc11B.1.2430.00007
S149N149delAAC---11B.1.2430.00007
S149N149NaaCaaT11B.1.258.170.000104
S149N149TaAcaCc11B.1.3320.003497
S149N149NaaCaaT11B.1.3380.008621
S149N149NaaCaaT11B.1.3510.00003
S149N149NaaCaaT11B.1.351.20.000303
S149N149NaaCaaT11B.1.360.000146
S149N149NaaCaaT11B.1.3690.000285
S149N149HAacCac11B.1.3950.007042
S149N149delAAC---11B.1.4150.014286
S149N149TaAcaCc11B.1.4160.001269
S149N149NaaCaaT11B.1.4240.008065
S149N149DAacGac11B.1.4270.00005
S149N149DAacGac11B.1.4290.000024
S149N149DAacGac11B.1.4680.005714
S149N149KaaCaaA11B.1.5250.000113
S149N149DAacGac11B.1.5250.000113
S149N149TaAcaCc11B.1.5260.000024
S149N149IaAcaTc11B.1.5260.000024
S149N149HAacCac11B.1.5260.000024
S149N149DAacGac11B.1.5260.000024
S149N149YAacTac11B.1.5760.000907
S149N149del1aaCaa-11B.1.5960.000087
S149N149YAacTac11B.1.5960.000087
S149N149DAacGac11B.1.617.10.000129
S149N149XAaCTaA11B.1.617.20.000004
S149N149del1Aac-ac11B.1.617.20.000004
S149N149YAacTac11B.1.617.20.000004
S149N149NaaCaaT11B.1.6180.004032
S149N149delAAC---11B.1.6200.000946
S149N149YAacTac11B.1.6210.000089
S149N149DAacGac11B.1.6230.000536
S149N149KaaCaaA11B.1.6250.002353
S149N149KaaCaaA11B.1.6370.000073
S149N149QAaCCaA11B.1.6370.000073
S149N149DAacGac11B.1.6370.000073
S149N149HAacCac11B.1.6370.000073
S149N149GAAcGGc11B.60.00091
S149N149NaaCaaT11B.6.60.000889
S149N149delAAC---11C.360.000911
S149N149KaaCaaA11P.1.10.000318
S149N149NaaCaaT11P.1.120.000484
S149N149DAacGac11P.1.170.000162
S149N149delAAC---11P.30.001595
S149N149delAAC---11Q.20.000613
S149N149NaaCaaT11R.10.00009
S149N149KaaCaaA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.