CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 148 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S148N148NsynaaCaaT33973397122004-22006

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S148N148NaaCaaT33973397All0.00065
S148N148NaaCaaT10861086P.1.10.344981
S148N148NaaCaaT347347B.1.1.70.000311
S148N148NaaCaaT286286AY.100.151563
S148N148NaaCaaT253253B.1.1.390.12895
S148N148NaaCaaT184184B.1.36.10.209806
S148N148NaaCaaT172172AY.50.003552
S148N148NaaCaaT8484AY.430.000372
S148N148NaaCaaT7070B.1.20.000616
S148N148NaaCaaT6666AY.40.000103
S148N148NaaCaaT5858P.1.130.052111
S148N148NaaCaaT5454P.10.000851
S148N148NaaCaaT4747B.1.617.20.000177
S148N148NaaCaaT4545AY.440.000274
S148N148NaaCaaT3939B.10.000357
S148N148NaaCaaT3838B.1.10.000689
S148N148NaaCaaT3131AY.250.000186
S148N148NaaCaaT2626B.1.3110.007139
S148N148NaaCaaT2222AY.1030.000137
S148N148NaaCaaT2121AY.390.000519
S148N148NaaCaaT1919B.1.4270.000959
S148N148NaaCaaT1818AY.740.002082
S148N148NaaCaaT1818B.1.466.20.007042
S148N148NaaCaaT1515B.1.1600.000468
S148N148NaaCaaT1515B.1.177.350.010366
S148N148NaaCaaT1515Q.30.002175
S148N148NaaCaaT1414AY.9.20.000514
S148N148NaaCaaT1414B.1.4290.000329
S148N148NaaCaaT1414B.1.5960.00122
S148N148NaaCaaT1313B.1.1770.000171
S148N148NaaCaaT1313B.1.5260.000306
S148N148NaaCaaT1212AY.1020.000318
S148N148NaaCaaT1111B.1.5610.004367
S148N148NaaCaaT1010A.190.09434
S148N148NaaCaaT1010B.1.3510.000297
S148N148NaaCaaT1010D.20.00075
S148N148NaaCaaT88AY.30.00008
S148N148NaaCaaT88B.1.1.1610.028269
S148N148NaaCaaT88B.1.3690.002282
S148N148NaaCaaT88B.1.4030.026144
S148N148NaaCaaT77AY.1190.000247
S148N148NaaCaaT77B.1.1.3650.039106
S148N148NaaCaaT77B.1.1.4340.00244
S148N148NaaCaaT77B.1.438.10.000751
S148N148NaaCaaT66AY.470.000187
S148N148NaaCaaT66AY.98.10.000291
S148N148NaaCaaT66B.1.177.420.005367
S148N148NaaCaaT66B.1.5250.000679
S148N148NaaCaaT55B.1.4700.007022
S148N148NaaCaaT55P.1.140.000239
S148N148NaaCaaT44AY.4.20.000087
S148N148NaaCaaT44B.1.1.3060.001754
S148N148NaaCaaT44B.1.1.3480.003185
S148N148NaaCaaT44B.1.1.5190.000159
S148N148NaaCaaT44B.1.177.810.000757
S148N148NaaCaaT33AY.290.000047
S148N148NaaCaaT33AY.560.004815
S148N148NaaCaaT33AY.590.001589
S148N148NaaCaaT33B.1.1.2160.002671
S148N148NaaCaaT33B.1.1.2220.000612
S148N148NaaCaaT33B.1.1.370.000579
S148N148NaaCaaT33B.1.2580.0002
S148N148NaaCaaT33B.1.258.170.000312
S148N148NaaCaaT33B.1.4000.001287
S148N148NaaCaaT33B.1.6210.000266
S148N148NaaCaaT33B.1.6370.000219
S148N148NaaCaaT22AA.70.018349
S148N148NaaCaaT22AY.200.000078
S148N148NaaCaaT22AY.270.000129
S148N148NaaCaaT22AY.3.10.000171
S148N148NaaCaaT22AY.420.00008
S148N148NaaCaaT22AY.46.40.000329
S148N148NaaCaaT22AY.5.30.000675
S148N148NaaCaaT22AY.610.00021
S148N148NaaCaaT22B0.000256
S148N148NaaCaaT22B.1.1.3260.003521
S148N148NaaCaaT22B.1.1.4200.002012
S148N148NaaCaaT22B.1.1.630.000772
S148N148NaaCaaT22B.1.177.150.001262
S148N148NaaCaaT22B.1.177.450.000762
S148N148NaaCaaT22B.1.177.520.003515
S148N148NaaCaaT22B.1.1780.047619
S148N148NaaCaaT22B.1.2100.004264
S148N148NaaCaaT22B.1.2430.000139
S148N148NaaCaaT22B.1.258.70.003824
S148N148NaaCaaT22B.1.360.000292
S148N148NaaCaaT22B.1.4090.001563
S148N148NaaCaaT22B.1.6090.000959
S148N148NaaCaaT22B.1.617.10.000258
S148N148NaaCaaT22C.370.000232
S148N148NaaCaaT22C.380.016129
S148N148NaaCaaT22P.20.000373
S148N148NaaCaaT22Q.80.00033
S148N148NaaCaaT11A0.000387
S148N148NaaCaaT11AY.1140.000231
S148N148NaaCaaT11AY.230.00007
S148N148NaaCaaT11AY.330.000067
S148N148NaaCaaT11AY.34.10.00051
S148N148NaaCaaT11AY.380.000499
S148N148NaaCaaT11AY.46.10.001027
S148N148NaaCaaT11AY.540.000095
S148N148NaaCaaT11AY.580.000907
S148N148NaaCaaT11AY.630.000387
S148N148NaaCaaT11AY.9.10.000084
S148N148NaaCaaT11AY.920.000287
S148N148NaaCaaT11B.1.1.1910.004762
S148N148NaaCaaT11B.1.1.2140.000055
S148N148NaaCaaT11B.1.1.280.000311
S148N148NaaCaaT11B.1.1.4130.006897
S148N148NaaCaaT11B.1.1.5210.005348
S148N148NaaCaaT11B.1.110.30.000718
S148N148NaaCaaT11B.1.1260.001276
S148N148NaaCaaT11B.1.1390.000733
S148N148NaaCaaT11B.1.160.260.002421
S148N148NaaCaaT11B.1.160.320.004292
S148N148NaaCaaT11B.1.177.600.000218
S148N148NaaCaaT11B.1.177.70.000165
S148N148NaaCaaT11B.1.2140.003663
S148N148NaaCaaT11B.1.2210.000071
S148N148NaaCaaT11B.1.2340.000132
S148N148NaaCaaT11B.1.2360.002053
S148N148NaaCaaT11B.1.36.360.000602
S148N148NaaCaaT11B.1.3670.000792
S148N148NaaCaaT11B.1.3800.006623
S148N148NaaCaaT11B.1.4110.003704
S148N148NaaCaaT11B.1.4160.001269
S148N148NaaCaaT11B.1.4590.004082
S148N148NaaCaaT11B.1.4990.00105
S148N148NaaCaaT11B.1.5320.006211
S148N148NaaCaaT11B.1.5510.00129
S148N148NaaCaaT11B.1.5760.000907
S148N148NaaCaaT11B.1.5990.00365
S148N148NaaCaaT11B.1.621.10.000506
S148N148NaaCaaT11B.60.00091
S148N148NaaCaaT11B.6.10.026316
S148N148NaaCaaT11C.160.00106
S148N148NaaCaaT11C.260.007353
S148N148NaaCaaT11P.1.120.000484
S148N148NaaCaaT11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.