CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 148

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	148	N148N		syn	aaC	aaT	3397	3397	1	22004-22006
S	148	N148T		nonsyn	aAc	aCc	2626	2623	0.998858	22004-22006
S	148	N148T		nonsyn	aAC	aCA	2626	2	0.000761615	22004-22006
S	148	N148T		nonsyn	aAC	aCT	2626	1	0.000380807	22004-22006
S	148	N148S		nonsyn	aAc	aGc	1260	1257	0.997619	22004-22006
S	148	N148S		nonsyn	aAC	aGT	1260	2	0.0015873	22004-22006
S	148	N148S		nonsyn	AAc	TCc	1260	1	0.000793651	22004-22006
S	148	N148del		del	AAC	---	401	401	1	22004-22006
S	148	N148Y		nonsyn	Aac	Tac	274	274	1	22004-22006
S	148	N148K		nonsyn	aaC	aaA	192	145	0.755208	22004-22006
S	148	N148K		nonsyn	aaC	aaG	192	47	0.244792	22004-22006
S	148	N148D		nonsyn	Aac	Gac	130	130	1	22004-22006
S	148	N148H		nonsyn	Aac	Cac	37	36	0.972973	22004-22006
S	148	N148H		nonsyn	AaC	CaT	37	1	0.027027	22004-22006
S	148	N148I		nonsyn	aAc	aTc	10	10	1	22004-22006
S	148	N148del2		del	aAC	a--	7	5	0.714286	22004-22006
S	148	N148del2		del	AAc	--c	7	1	0.142857	22004-22006
S	148	N148del2		del	AAC	--N	7	1	0.142857	22004-22006
S	148	N148G		nonsyn	AAc	GGc	3	2	0.666667	22004-22006
S	148	N148G		nonsyn	AAC	GGG	3	1	0.333333	22004-22006
S	148	N148X		nonsyn	AaC	TaA	1	1	1	22004-22006
S	148	N148R		nonsyn	aAC	aGA	1	1	1	22004-22006
S	148	N148L		nonsyn	AAc	CTc	1	1	1	22004-22006
S	148	N148C		nonsyn	AAc	TGc	1	1	1	22004-22006
S	148	N148del1		del	Aac	-ac	1	1	1	22004-22006

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	148	N148N	aaC	aaT	3397	3397	All	0.00065
S	148	N148T	aAc	aCc	2623	2626	All	0.000502
S	148	N148T	aAC	aCA	2	2626	All	0
S	148	N148T	aAC	aCT	1	2626	All	0
S	148	N148S	aAc	aGc	1257	1260	All	0.00024
S	148	N148S	aAC	aGT	2	1260	All	0
S	148	N148S	AAc	TCc	1	1260	All	0
S	148	N148N	aaC	aaT	1086	1086	P.1.1	0.344981
S	148	N148T	aAc	aCc	1023	1023	B.1.1.7	0.000916
S	148	N148S	aAc	aGc	999	1000	AY.4	0.001555
S	148	N148S	aAC	aGT	1	1000	AY.4	0.000002
S	148	N148del	AAC	---	401	401	All	0.000077
S	148	N148N	aaC	aaT	347	347	B.1.1.7	0.000311
S	148	N148N	aaC	aaT	286	286	AY.10	0.151563
S	148	N148Y	Aac	Tac	274	274	All	0.000052
S	148	N148N	aaC	aaT	253	253	B.1.1.39	0.12895
S	148	N148T	aAc	aCc	242	243	AY.4	0.000377
S	148	N148T	aAC	aCT	1	243	AY.4	0.000002
S	148	N148K	aaC	aaA	145	192	All	0.000028
S	148	N148K	aaC	aaG	47	192	All	0.000009
S	148	N148N	aaC	aaT	184	184	B.1.36.1	0.209806
S	148	N148Y	Aac	Tac	174	174	AY.4	0.000271
S	148	N148N	aaC	aaT	172	172	AY.5	0.003552
S	148	N148T	aAc	aCc	160	160	B.1.1.63	0.061728
S	148	N148T	aAc	aCc	144	144	Q.1	0.018191
S	148	N148D	Aac	Gac	130	130	All	0.000025
S	148	N148S	aAc	aGc	129	130	B.1.1.7	0.000115
S	148	N148S	AAc	TCc	1	130	B.1.1.7	0.000001
S	148	N148K	aaC	aaA	79	112	B.1.1.7	0.000071
S	148	N148K	aaC	aaG	33	112	B.1.1.7	0.00003
S	148	N148T	aAc	aCc	108	108	B.1.636	0.724832
S	148	N148T	aAc	aCc	88	88	AY.43	0.00039
S	148	N148N	aaC	aaT	84	84	AY.43	0.000372
S	148	N148T	aAc	aCc	82	82	B.1.617.2	0.000309
S	148	N148D	Aac	Gac	79	79	B.1.1.7	0.000071
S	148	N148N	aaC	aaT	70	70	B.1.2	0.000616
S	148	N148del	AAC	---	69	69	AY.4	0.000107
S	148	N148T	aAc	aCc	67	67	AY.75	0.003754
S	148	N148N	aaC	aaT	66	66	AY.4	0.000103
S	148	N148N	aaC	aaT	58	58	P.1.13	0.052111
S	148	N148T	aAc	aCc	57	57	AY.20	0.002215
S	148	N148T	aAc	aCc	55	55	B.1.621	0.004869
S	148	N148N	aaC	aaT	54	54	P.1	0.000851
S	148	N148T	aAc	aCc	50	50	R.1	0.0045
S	148	N148N	aaC	aaT	47	47	B.1.617.2	0.000177
S	148	N148del	AAC	---	45	45	AY.43	0.000199
S	148	N148N	aaC	aaT	45	45	AY.44	0.000274
S	148	N148N	aaC	aaT	39	39	B.1	0.000357
S	148	N148N	aaC	aaT	38	38	B.1.1	0.000689
S	148	N148H	Aac	Cac	36	37	All	0.000007
S	148	N148H	AaC	CaT	1	37	All	0
S	148	N148T	aAc	aCc	35	36	AY.44	0.000213
S	148	N148T	aAC	aCA	1	36	AY.44	0.000006
S	148	N148T	aAc	aCc	35	35	B.1	0.000321
S	148	N148Y	Aac	Tac	35	35	B.1.1.7	0.000031
S	148	N148del	AAC	---	33	33	AY.103	0.000205
S	148	N148N	aaC	aaT	31	31	AY.25	0.000186
S	148	N148del	AAC	---	31	31	B.1.1.7	0.000028
S	148	N148T	aAc	aCc	29	29	AY.3	0.000288
S	148	N148N	aaC	aaT	26	26	B.1.311	0.007139
S	148	N148T	aAc	aCc	23	23	B.1.221	0.001634
S	148	N148K	aaC	aaA	23	23	B.1.621	0.002036
S	148	N148N	aaC	aaT	22	22	AY.103	0.000137
S	148	N148del	AAC	---	22	22	B.1.526	0.000517
S	148	N148del	AAC	---	21	21	AY.25	0.000126
S	148	N148N	aaC	aaT	21	21	AY.39	0.000519
S	148	N148T	aAc	aCc	21	21	B.1.1	0.000381
S	148	N148T	aAc	aCc	20	20	AY.25	0.00012
S	148	N148del	AAC	---	20	20	B.1.617.2	0.000075
S	148	N148N	aaC	aaT	19	19	B.1.427	0.000959
S	148	N148N	aaC	aaT	18	18	AY.74	0.002082
S	148	N148N	aaC	aaT	18	18	B.1.466.2	0.007042
S	148	N148T	aAc	aCc	17	17	AY.102	0.000451
S	148	N148T	aAc	aCc	17	17	AY.33	0.001135
S	148	N148S	aAc	aGc	17	17	AY.4.2	0.000369
S	148	N148T	aAc	aCc	17	17	B.1.525	0.001924
S	148	N148T	aAc	aCc	16	16	B.1.351	0.000476
S	148	N148Y	Aac	Tac	15	15	AY.121	0.00203
S	148	N148K	aaC	aaA	8	15	AY.4	0.000012
S	148	N148K	aaC	aaG	7	15	AY.4	0.000011
S	148	N148N	aaC	aaT	15	15	B.1.160	0.000468
S	148	N148N	aaC	aaT	15	15	B.1.177.35	0.010366
S	148	N148T	aAc	aCc	15	15	B.1.2	0.000132
S	148	N148N	aaC	aaT	15	15	Q.3	0.002175
S	148	N148del	AAC	---	14	14	AY.102	0.000371
S	148	N148del	AAC	---	14	14	AY.4.2	0.000304
S	148	N148N	aaC	aaT	14	14	AY.9.2	0.000514
S	148	N148N	aaC	aaT	14	14	B.1.429	0.000329
S	148	N148N	aaC	aaT	14	14	B.1.596	0.00122
S	148	N148S	aAc	aGc	13	13	B.1	0.000119
S	148	N148N	aaC	aaT	13	13	B.1.177	0.000171
S	148	N148N	aaC	aaT	13	13	B.1.526	0.000306
S	148	N148N	aaC	aaT	12	12	AY.102	0.000318
S	148	N148T	aAc	aCc	12	12	AY.5	0.000248
S	148	N148T	aAc	aCc	12	12	Q.8	0.001979
S	148	N148T	aAc	aCc	11	11	AY.75.1	0.001983
S	148	N148N	aaC	aaT	11	11	B.1.561	0.004367
S	148	N148N	aaC	aaT	10	10	A.19	0.09434
S	148	N148I	aAc	aTc	10	10	All	0.000002
S	148	N148K	aaC	aaA	9	10	AY.3	0.00009
S	148	N148K	aaC	aaG	1	10	AY.3	0.00001
S	148	N148del	AAC	---	10	10	AY.42	0.000402
S	148	N148del	AAC	---	10	10	AY.44	0.000061
S	148	N148T	aAc	aCc	10	10	B.1.1.214	0.000555
S	148	N148N	aaC	aaT	10	10	B.1.351	0.000297
S	148	N148Y	Aac	Tac	10	10	C.37	0.001161
S	148	N148N	aaC	aaT	10	10	D.2	0.00075
S	148	N148T	aAc	aCc	9	9	AY.46.6	0.00065
S	148	N148S	aAc	aGc	9	9	B.1.36	0.001313
S	148	N148S	aAc	aGc	8	8	A.1	0.002255
S	148	N148N	aaC	aaT	8	8	AY.3	0.00008
S	148	N148T	aAc	aCc	8	8	AY.45	0.000973
S	148	N148N	aaC	aaT	8	8	B.1.1.161	0.028269
S	148	N148H	Aac	Cac	8	8	B.1.1.7	0.000007
S	148	N148S	aAc	aGc	8	8	B.1.160	0.00025
S	148	N148N	aaC	aaT	8	8	B.1.369	0.002282
S	148	N148N	aaC	aaT	8	8	B.1.403	0.026144
S	148	N148T	aAc	aCc	8	8	B.1.637	0.000585
S	148	N148del2	aAC	a--	5	7	All	0.000001
S	148	N148del2	AAc	--c	1	7	All	0
S	148	N148del2	AAC	--N	1	7	All	0
S	148	N148T	aAc	aCc	7	7	AY.103	0.000043
S	148	N148N	aaC	aaT	7	7	AY.119	0.000247
S	148	N148T	aAc	aCc	7	7	AY.26	0.000198
S	148	N148N	aaC	aaT	7	7	B.1.1.365	0.039106
S	148	N148N	aaC	aaT	7	7	B.1.1.434	0.00244
S	148	N148N	aaC	aaT	7	7	B.1.438.1	0.000751
S	148	N148S	aAc	aGc	7	7	B.1.617.2	0.000026
S	148	N148T	aAc	aCc	7	7	P.1	0.00011
S	148	N148T	aAc	aCc	7	7	P.1.17	0.001132
S	148	N148T	aAc	aCc	6	6	AY.113	0.000854
S	148	N148T	aAc	aCc	6	6	AY.119	0.000212
S	148	N148T	aAc	aCc	6	6	AY.4.2	0.00013
S	148	N148N	aaC	aaT	6	6	AY.47	0.000187
S	148	N148T	aAc	aCc	6	6	AY.64	0.003571
S	148	N148T	aAc	aCc	6	6	AY.86	0.004979
S	148	N148N	aaC	aaT	6	6	AY.98.1	0.000291
S	148	N148D	Aac	Gac	6	6	B.1.1	0.000109
S	148	N148N	aaC	aaT	6	6	B.1.177.42	0.005367
S	148	N148T	aAc	aCc	6	6	B.1.429	0.000141
S	148	N148N	aaC	aaT	6	6	B.1.525	0.000679
S	148	N148T	aAc	aCc	6	6	B.1.556	0.045113
S	148	N148Y	Aac	Tac	6	6	B.1.617.2	0.000023
S	148	N148D	Aac	Gac	6	6	B.1.621	0.000531
S	148	N148K	aaC	aaA	6	6	D.2	0.00045
S	148	N148D	Aac	Gac	6	6	Q.3	0.00087
S	148	N148T	aAc	aCc	5	5	AY.100	0.00023
S	148	N148T	aAc	aCc	5	5	AY.39	0.000124
S	148	N148S	aAc	aGc	5	5	AY.39	0.000124
S	148	N148T	aAc	aCc	5	5	AY.39.1	0.000198
S	148	N148T	aAc	aCc	5	5	AY.42	0.000201
S	148	N148H	Aac	Cac	5	5	B.1.1.318	0.001509
S	148	N148N	aaC	aaT	5	5	B.1.470	0.007022
S	148	N148T	aAc	aCc	5	5	B.1.526	0.000118
S	148	N148H	Aac	Cac	4	5	B.1.617.1	0.000516
S	148	N148H	AaC	CaT	1	5	B.1.617.1	0.000129
S	148	N148del	AAC	---	5	5	B.1.621	0.000443
S	148	N148S	aAc	aGc	5	5	B.1.637	0.000365
S	148	N148T	aAc	aCc	5	5	C.37	0.00058
S	148	N148N	aaC	aaT	5	5	P.1.14	0.000239
S	148	N148H	Aac	Cac	4	4	AY.103	0.000025
S	148	N148T	aAc	aCc	4	4	AY.120	0.000149
S	148	N148T	aAc	aCc	4	4	AY.121	0.000541
S	148	N148T	aAc	aCc	4	4	AY.23	0.000279
S	148	N148N	aaC	aaT	4	4	AY.4.2	0.000087
S	148	N148del	AAC	---	4	4	AY.4.2.1	0.000596
S	148	N148Y	Aac	Tac	4	4	AY.43	0.000018
S	148	N148T	aAc	aCc	4	4	AY.46	0.000416
S	148	N148del	AAC	---	4	4	B.1	0.000037
S	148	N148K	aaC	aaA	4	4	B.1	0.000037
S	148	N148N	aaC	aaT	4	4	B.1.1.306	0.001754
S	148	N148T	aAc	aCc	4	4	B.1.1.343	0.083333
S	148	N148N	aaC	aaT	4	4	B.1.1.348	0.003185
S	148	N148T	aAc	aCc	4	4	B.1.1.462	0.034483
S	148	N148N	aaC	aaT	4	4	B.1.1.519	0.000159
S	148	N148T	aAc	aCc	4	4	B.1.177	0.000053
S	148	N148del	AAC	---	4	4	B.1.177	0.000053
S	148	N148N	aaC	aaT	4	4	B.1.177.81	0.000757
S	148	N148S	aAc	aGc	4	4	B.1.595	0.001044
S	148	N148del	AAC	---	4	4	P.1	0.000063
S	148	N148G	AAc	GGc	2	3	All	0
S	148	N148G	AAC	GGG	1	3	All	0
S	148	N148Y	Aac	Tac	3	3	AY.100	0.000138
S	148	N148Y	Aac	Tac	3	3	AY.11	0.004016
S	148	N148T	aAc	aCc	3	3	AY.118	0.000188
S	148	N148del	AAC	---	3	3	AY.120	0.000112
S	148	N148T	aAc	aCc	3	3	AY.120.1	0.000963
S	148	N148del	AAC	---	3	3	AY.26	0.000085
S	148	N148N	aaC	aaT	3	3	AY.29	0.000047
S	148	N148del	AAC	---	3	3	AY.3	0.00003
S	148	N148S	aAc	aGc	3	3	AY.33	0.0002
S	148	N148T	aAc	aCc	3	3	AY.36	0.000445
S	148	N148del	AAC	---	3	3	AY.39	0.000074
S	148	N148D	Aac	Gac	3	3	AY.4	0.000005
S	148	N148T	aAc	aCc	3	3	AY.4.2.1	0.000447
S	148	N148del	AAC	---	3	3	AY.4.5	0.000322
S	148	N148S	aAc	aGc	2	3	AY.43	0.000009
S	148	N148S	aAC	aGT	1	3	AY.43	0.000004
S	148	N148T	aAc	aCc	3	3	AY.47	0.000093
S	148	N148T	aAc	aCc	3	3	AY.55	0.002752
S	148	N148N	aaC	aaT	3	3	AY.56	0.004815
S	148	N148N	aaC	aaT	3	3	AY.59	0.001589
S	148	N148T	aAc	aCc	3	3	AY.90	0.002053
S	148	N148S	aAc	aGc	3	3	B	0.000383
S	148	N148del	AAC	---	3	3	B.1.1	0.000054
S	148	N148N	aaC	aaT	3	3	B.1.1.216	0.002671
S	148	N148N	aaC	aaT	3	3	B.1.1.222	0.000612
S	148	N148N	aaC	aaT	3	3	B.1.1.37	0.000579
S	148	N148T	aAc	aCc	3	3	B.1.1.416	0.002715
S	148	N148H	Aac	Cac	3	3	B.1.2	0.000026
S	148	N148N	aaC	aaT	3	3	B.1.258	0.0002
S	148	N148N	aaC	aaT	3	3	B.1.258.17	0.000312
S	148	N148del	AAC	---	3	3	B.1.351	0.000089
S	148	N148T	aAc	aCc	3	3	B.1.351.2	0.000908
S	148	N148N	aaC	aaT	3	3	B.1.400	0.001287
S	148	N148S	aAc	aGc	3	3	B.1.429	0.000071
S	148	N148T	aAc	aCc	3	3	B.1.466.2	0.001174
S	148	N148K	aaC	aaA	3	3	B.1.525	0.000339
S	148	N148del	AAC	---	3	3	B.1.596	0.000261
S	148	N148S	aAc	aGc	3	3	B.1.621	0.000266
S	148	N148N	aaC	aaT	3	3	B.1.621	0.000266
S	148	N148T	aAc	aCc	3	3	B.1.621.1	0.001517
S	148	N148N	aaC	aaT	3	3	B.1.637	0.000219
S	148	N148del	AAC	---	3	3	P.1.15	0.000697
S	148	N148Y	Aac	Tac	2	2		0.111111
S	148	N148N	aaC	aaT	2	2	AA.7	0.018349
S	148	N148K	aaC	aaA	2	2	AY.102	0.000053
S	148	N148del	AAC	---	2	2	AY.108	0.002205
S	148	N148S	aAc	aGc	2	2	AY.120	0.000074
S	148	N148T	aAc	aCc	2	2	AY.14	0.000176
S	148	N148S	aAc	aGc	2	2	AY.20	0.000078
S	148	N148N	aaC	aaT	2	2	AY.20	0.000078
S	148	N148S	aAc	aGc	2	2	AY.24	0.000862
S	148	N148N	aaC	aaT	2	2	AY.27	0.000129
S	148	N148T	aAc	aCc	2	2	AY.29	0.000032
S	148	N148del	AAC	---	2	2	AY.29.1	0.000441
S	148	N148S	aAc	aGc	2	2	AY.3	0.00002
S	148	N148T	aAc	aCc	2	2	AY.3.1	0.000171
S	148	N148N	aaC	aaT	2	2	AY.3.1	0.000171
S	148	N148T	aAc	aCc	2	2	AY.30	0.000791
S	148	N148del	AAC	---	2	2	AY.33	0.000134
S	148	N148Y	Aac	Tac	2	2	AY.39.1	0.000079
S	148	N148H	Aac	Cac	2	2	AY.4.2	0.000043
S	148	N148S	aAc	aGc	2	2	AY.42	0.00008
S	148	N148N	aaC	aaT	2	2	AY.42	0.00008
S	148	N148D	Aac	Gac	2	2	AY.44	0.000012
S	148	N148N	aaC	aaT	2	2	AY.46.4	0.000329
S	148	N148del	AAC	---	2	2	AY.5	0.000041
S	148	N148N	aaC	aaT	2	2	AY.5.3	0.000675
S	148	N148N	aaC	aaT	2	2	AY.61	0.00021
S	148	N148del	AAC	---	2	2	AY.65	0.001066
S	148	N148D	Aac	Gac	2	2	AY.75	0.000112
S	148	N148del	AAC	---	2	2	AY.9	0.000135
S	148	N148D	Aac	Gac	2	2	AY.9.2	0.000073
S	148	N148T	aAc	aCc	2	2	AY.92	0.000575
S	148	N148S	aAc	aGc	2	2	AY.92	0.000575
S	148	N148T	aAc	aCc	2	2	AY.93	0.000546
S	148	N148del	AAC	---	2	2	AY.99	0.002099
S	148	N148T	aAc	aCc	2	2	AY.99.2	0.000184
S	148	N148del	AAC	---	2	2	AZ.5	0.007018
S	148	N148N	aaC	aaT	2	2	B	0.000256
S	148	N148H	Aac	Cac	2	2	B.1.1	0.000036
S	148	N148del	AAC	---	2	2	B.1.1.311	0.000716
S	148	N148del	AAC	---	2	2	B.1.1.318	0.000604
S	148	N148N	aaC	aaT	2	2	B.1.1.326	0.003521
S	148	N148N	aaC	aaT	2	2	B.1.1.420	0.002012
S	148	N148T	aAc	aCc	2	2	B.1.1.50	0.001358
S	148	N148N	aaC	aaT	2	2	B.1.1.63	0.000772
S	148	N148G	AAc	GGc	2	2	B.1.1.7	0.000002
S	148	N148N	aaC	aaT	2	2	B.1.177.15	0.001262
S	148	N148del	AAC	---	2	2	B.1.177.4	0.000422
S	148	N148N	aaC	aaT	2	2	B.1.177.45	0.000762
S	148	N148N	aaC	aaT	2	2	B.1.177.52	0.003515
S	148	N148D	Aac	Gac	2	2	B.1.177.81	0.000379
S	148	N148N	aaC	aaT	2	2	B.1.178	0.047619
S	148	N148S	aAc	aGc	2	2	B.1.2	0.000018
S	148	N148N	aaC	aaT	2	2	B.1.210	0.004264
S	148	N148T	aAc	aCc	2	2	B.1.240	0.000431
S	148	N148N	aaC	aaT	2	2	B.1.243	0.000139
S	148	N148N	aaC	aaT	2	2	B.1.258.7	0.003824
S	148	N148K	aaC	aaG	2	2	B.1.324	0.00321
S	148	N148K	aaC	aaA	1	2	B.1.351	0.00003
S	148	N148K	aaC	aaG	1	2	B.1.351	0.00003
S	148	N148N	aaC	aaT	2	2	B.1.36	0.000292
S	148	N148N	aaC	aaT	2	2	B.1.409	0.001563
S	148	N148T	aAc	aCc	2	2	B.1.470	0.002809
S	148	N148D	Aac	Gac	2	2	B.1.525	0.000226
S	148	N148S	aAc	aGc	2	2	B.1.526	0.000047
S	148	N148T	aAc	aCc	2	2	B.1.565	0.001621
S	148	N148N	aaC	aaT	2	2	B.1.609	0.000959
S	148	N148N	aaC	aaT	2	2	B.1.617.1	0.000258
S	148	N148D	Aac	Gac	2	2	B.1.617.2	0.000008
S	148	N148Y	Aac	Tac	2	2	B.1.619	0.001742
S	148	N148del	AAC	---	2	2	C.37	0.000232
S	148	N148N	aaC	aaT	2	2	C.37	0.000232
S	148	N148N	aaC	aaT	2	2	C.38	0.016129
S	148	N148S	aAc	aGc	2	2	P.1	0.000032
S	148	N148N	aaC	aaT	2	2	P.2	0.000373
S	148	N148N	aaC	aaT	2	2	Q.8	0.00033
S	148	N148I	aAc	aTc	1	1		0.055556
S	148	N148del	AAC	---	1	1	A	0.000387
S	148	N148N	aaC	aaT	1	1	A	0.000387
S	148	N148T	aAc	aCc	1	1	A.1	0.000282
S	148	N148del	AAC	---	1	1	A.2.5	0.000499
S	148	N148T	aAc	aCc	1	1	A.23.1	0.000704
S	148	N148T	aAc	aCc	1	1	AL.1	0.012987
S	148	N148L	AAc	CTc	1	1	All	0
S	148	N148C	AAc	TGc	1	1	All	0
S	148	N148del1	Aac	-ac	1	1	All	0
S	148	N148R	aAC	aGA	1	1	All	0
S	148	N148X	AaC	TaA	1	1	All	0
S	148	N148del	AAC	---	1	1	AY.100	0.000046
S	148	N148S	aAc	aGc	1	1	AY.102	0.000027
S	148	N148Y	Aac	Tac	1	1	AY.102	0.000027
S	148	N148H	Aac	Cac	1	1	AY.102	0.000027
S	148	N148S	aAc	aGc	1	1	AY.103	0.000006
S	148	N148Y	Aac	Tac	1	1	AY.103	0.000006
S	148	N148K	aaC	aaA	1	1	AY.103	0.000006
S	148	N148del	AAC	---	1	1	AY.107	0.000466
S	148	N148del	AAC	---	1	1	AY.109	0.00074
S	148	N148T	aAc	aCc	1	1	AY.109	0.00074
S	148	N148T	aAc	aCc	1	1	AY.111	0.000183
S	148	N148N	aaC	aaT	1	1	AY.114	0.000231
S	148	N148D	Aac	Gac	1	1	AY.117	0.000085
S	148	N148del	AAC	---	1	1	AY.118	0.000063
S	148	N148del	AAC	---	1	1	AY.119	0.000035
S	148	N148del	AAC	---	1	1	AY.120.2	0.001285
S	148	N148del	AAC	---	1	1	AY.121	0.000135
S	148	N148S	aAc	aGc	1	1	AY.121	0.000135
S	148	N148D	Aac	Gac	1	1	AY.16	0.00038
S	148	N148Y	Aac	Tac	1	1	AY.20	0.000039
S	148	N148T	aAc	aCc	1	1	AY.22	0.002092
S	148	N148D	Aac	Gac	1	1	AY.23	0.00007
S	148	N148N	aaC	aaT	1	1	AY.23	0.00007
S	148	N148T	aAc	aCc	1	1	AY.24	0.000431
S	148	N148D	Aac	Gac	1	1	AY.25	0.000006
S	148	N148del1	Aac	-ac	1	1	AY.25	0.000006
S	148	N148Y	Aac	Tac	1	1	AY.26	0.000028
S	148	N148T	aAc	aCc	1	1	AY.27	0.000065
S	148	N148del	AAC	---	1	1	AY.27	0.000065
S	148	N148del	AAC	---	1	1	AY.29	0.000016
S	148	N148Y	Aac	Tac	1	1	AY.3	0.00001
S	148	N148T	aAc	aCc	1	1	AY.32	0.000532
S	148	N148N	aaC	aaT	1	1	AY.33	0.000067
S	148	N148T	aAc	aCc	1	1	AY.34	0.000097
S	148	N148N	aaC	aaT	1	1	AY.34.1	0.00051
S	148	N148del	AAC	---	1	1	AY.34.1	0.00051
S	148	N148del2	AAC	--N	1	1	AY.34.1	0.00051
S	148	N148H	Aac	Cac	1	1	AY.37	0.000316
S	148	N148N	aaC	aaT	1	1	AY.38	0.000499
S	148	N148Y	Aac	Tac	1	1	AY.39	0.000025
S	148	N148D	Aac	Gac	1	1	AY.39.1	0.00004
S	148	N148del2	aAC	a--	1	1	AY.4	0.000002
S	148	N148I	aAc	aTc	1	1	AY.4	0.000002
S	148	N148del	AAC	---	1	1	AY.4.1	0.000737
S	148	N148S	aAc	aGc	1	1	AY.4.2.1	0.000149
S	148	N148T	aAc	aCc	1	1	AY.4.5	0.000107
S	148	N148K	aaC	aaG	1	1	AY.4.5	0.000107
S	148	N148I	aAc	aTc	1	1	AY.41	0.000294
S	148	N148Y	Aac	Tac	1	1	AY.42	0.00004
S	148	N148K	aaC	aaA	1	1	AY.42	0.00004
S	148	N148I	aAc	aTc	1	1	AY.43	0.000004
S	148	N148D	Aac	Gac	1	1	AY.43	0.000004
S	148	N148S	aAc	aGc	1	1	AY.44	0.000006
S	148	N148K	aaC	aaG	1	1	AY.44	0.000006
S	148	N148D	Aac	Gac	1	1	AY.46	0.000104
S	148	N148N	aaC	aaT	1	1	AY.46.1	0.001027
S	148	N148H	Aac	Cac	1	1	AY.46.5	0.000198
S	148	N148del	AAC	---	1	1	AY.46.6	0.000072
S	148	N148K	aaC	aaA	1	1	AY.47	0.000031
S	148	N148del2	aAC	a--	1	1	AY.47	0.000031
S	148	N148D	Aac	Gac	1	1	AY.5	0.000021
S	148	N148del	AAC	---	1	1	AY.5.3	0.000337
S	148	N148T	aAc	aCc	1	1	AY.5.3	0.000337
S	148	N148N	aaC	aaT	1	1	AY.54	0.000095
S	148	N148S	aAc	aGc	1	1	AY.54	0.000095
S	148	N148N	aaC	aaT	1	1	AY.58	0.000907
S	148	N148T	aAc	aCc	1	1	AY.58	0.000907
S	148	N148del	AAC	---	1	1	AY.59	0.00053
S	148	N148T	aAc	aCc	1	1	AY.59	0.00053
S	148	N148T	aAc	aCc	1	1	AY.6	0.000041
S	148	N148S	aAc	aGc	1	1	AY.6	0.000041
S	148	N148del	AAC	---	1	1	AY.60	0.000938
S	148	N148del	AAC	---	1	1	AY.62	0.000436
S	148	N148N	aaC	aaT	1	1	AY.63	0.000387
S	148	N148T	aAc	aCc	1	1	AY.67	0.000464
S	148	N148T	aAc	aCc	1	1	AY.68	0.000274
S	148	N148I	aAc	aTc	1	1	AY.69	0.000187
S	148	N148T	aAc	aCc	1	1	AY.7.1	0.000113
S	148	N148del	AAC	---	1	1	AY.7.2	0.000559
S	148	N148del	AAC	---	1	1	AY.73	0.000665
S	148	N148del	AAC	---	1	1	AY.75	0.000056
S	148	N148Y	Aac	Tac	1	1	AY.75.1	0.00018
S	148	N148del2	AAc	--c	1	1	AY.78	0.001541
S	148	N148del	AAC	---	1	1	AY.84	0.000437
S	148	N148T	aAc	aCc	1	1	AY.84	0.000437
S	148	N148del	AAC	---	1	1	AY.85	0.000427
S	148	N148T	aAc	aCc	1	1	AY.87	0.000833
S	148	N148Y	Aac	Tac	1	1	AY.9.1	0.000084
S	148	N148T	aAc	aCc	1	1	AY.9.1	0.000084
S	148	N148N	aaC	aaT	1	1	AY.9.1	0.000084
S	148	N148T	aAc	aCc	1	1	AY.9.2	0.000037
S	148	N148S	aAc	aGc	1	1	AY.9.2	0.000037
S	148	N148N	aaC	aaT	1	1	AY.92	0.000287
S	148	N148I	aAc	aTc	1	1	AY.93	0.000273
S	148	N148del	AAC	---	1	1	AY.98.1	0.000048
S	148	N148del	AAC	---	1	1	AY.99.1	0.001553
S	148	N148del	AAC	---	1	1	AZ.2	0.000821
S	148	N148H	Aac	Cac	1	1	B	0.000128
S	148	N148del2	aAC	a--	1	1	B.1	0.000009
S	148	N148H	Aac	Cac	1	1	B.1	0.000009
S	148	N148Y	Aac	Tac	1	1	B.1	0.000009
S	148	N148S	aAc	aGc	1	1	B.1.1	0.000018
S	148	N148S	aAc	aGc	1	1	B.1.1.1	0.000327
S	148	N148del	AAC	---	1	1	B.1.1.139	0.022727
S	148	N148del	AAC	---	1	1	B.1.1.148	0.008772
S	148	N148N	aaC	aaT	1	1	B.1.1.191	0.004762
S	148	N148N	aaC	aaT	1	1	B.1.1.214	0.000055
S	148	N148Y	Aac	Tac	1	1	B.1.1.214	0.000055
S	148	N148D	Aac	Gac	1	1	B.1.1.216	0.00089
S	148	N148T	aAc	aCc	1	1	B.1.1.218	0.007692
S	148	N148N	aaC	aaT	1	1	B.1.1.28	0.000311
S	148	N148del	AAC	---	1	1	B.1.1.284	0.000107
S	148	N148del	AAC	---	1	1	B.1.1.317	0.000412
S	148	N148T	aAc	aCc	1	1	B.1.1.317	0.000412
S	148	N148T	aAc	aCc	1	1	B.1.1.318	0.000302
S	148	N148Y	Aac	Tac	1	1	B.1.1.318	0.000302
S	148	N148S	aAc	aGc	1	1	B.1.1.318	0.000302
S	148	N148K	aaC	aaA	1	1	B.1.1.33	0.000421
S	148	N148T	aAc	aCc	1	1	B.1.1.356	0.008547
S	148	N148T	aAc	aCc	1	1	B.1.1.406	0.006494
S	148	N148N	aaC	aaT	1	1	B.1.1.413	0.006897
S	148	N148T	aAc	aCc	1	1	B.1.1.432	0.001266
S	148	N148T	aAc	aCc	1	1	B.1.1.486	0.001577
S	148	N148S	aAc	aGc	1	1	B.1.1.507	0.008696
S	148	N148D	Aac	Gac	1	1	B.1.1.519	0.00004
S	148	N148T	aAc	aCc	1	1	B.1.1.519	0.00004
S	148	N148H	Aac	Cac	1	1	B.1.1.519	0.00004
S	148	N148N	aaC	aaT	1	1	B.1.1.521	0.005348
S	148	N148I	aAc	aTc	1	1	B.1.1.7	0.000001
S	148	N148K	aaC	aaG	1	1	B.1.110.3	0.000718
S	148	N148N	aaC	aaT	1	1	B.1.110.3	0.000718
S	148	N148N	aaC	aaT	1	1	B.1.126	0.001276
S	148	N148N	aaC	aaT	1	1	B.1.139	0.000733
S	148	N148Y	Aac	Tac	1	1	B.1.143	0.021277
S	148	N148T	aAC	aCA	1	1	B.1.160	0.000031
S	148	N148Y	Aac	Tac	1	1	B.1.160	0.000031
S	148	N148del	AAC	---	1	1	B.1.160	0.000031
S	148	N148D	Aac	Gac	1	1	B.1.160	0.000031
S	148	N148del	AAC	---	1	1	B.1.160.23	0.004831
S	148	N148N	aaC	aaT	1	1	B.1.160.26	0.002421
S	148	N148N	aaC	aaT	1	1	B.1.160.32	0.004292
S	148	N148T	aAc	aCc	1	1	B.1.160.7	0.002079
S	148	N148S	aAc	aGc	1	1	B.1.177	0.000013
S	148	N148D	Aac	Gac	1	1	B.1.177	0.000013
S	148	N148H	Aac	Cac	1	1	B.1.177	0.000013
S	148	N148D	Aac	Gac	1	1	B.1.177.21	0.000076
S	148	N148D	Aac	Gac	1	1	B.1.177.4	0.000211
S	148	N148N	aaC	aaT	1	1	B.1.177.60	0.000218
S	148	N148T	aAc	aCc	1	1	B.1.177.67	0.007634
S	148	N148N	aaC	aaT	1	1	B.1.177.7	0.000165
S	148	N148T	aAc	aCc	1	1	B.1.177.7	0.000165
S	148	N148T	aAc	aCc	1	1	B.1.177.77	0.000726
S	148	N148del	AAC	---	1	1	B.1.177.87	0.000728
S	148	N148T	aAc	aCc	1	1	B.1.177.87	0.000728
S	148	N148del	AAC	---	1	1	B.1.2	0.000009
S	148	N148I	aAc	aTc	1	1	B.1.2	0.000009
S	148	N148N	aaC	aaT	1	1	B.1.214	0.003663
S	148	N148N	aaC	aaT	1	1	B.1.221	0.000071
S	148	N148D	Aac	Gac	1	1	B.1.221	0.000071
S	148	N148N	aaC	aaT	1	1	B.1.234	0.000132
S	148	N148N	aaC	aaT	1	1	B.1.236	0.002053
S	148	N148del	AAC	---	1	1	B.1.243	0.00007
S	148	N148del2	aAC	a--	1	1	B.1.243	0.00007
S	148	N148T	aAc	aCc	1	1	B.1.314	0.007519
S	148	N148T	aAc	aCc	1	1	B.1.346	0.001311
S	148	N148S	aAc	aGc	1	1	B.1.351	0.00003
S	148	N148Y	Aac	Tac	1	1	B.1.351.3	0.000876
S	148	N148T	aAc	aCc	1	1	B.1.36.17	0.000494
S	148	N148N	aaC	aaT	1	1	B.1.36.36	0.000602
S	148	N148N	aaC	aaT	1	1	B.1.367	0.000792
S	148	N148T	aAc	aCc	1	1	B.1.369	0.000285
S	148	N148N	aaC	aaT	1	1	B.1.380	0.006623
S	148	N148T	aAc	aCc	1	1	B.1.380	0.006623
S	148	N148T	aAc	aCc	1	1	B.1.400	0.000429
S	148	N148T	aAc	aCc	1	1	B.1.408	0.00369
S	148	N148N	aaC	aaT	1	1	B.1.411	0.003704
S	148	N148del	AAC	---	1	1	B.1.415	0.014286
S	148	N148N	aaC	aaT	1	1	B.1.416	0.001269
S	148	N148K	aaC	aaA	1	1	B.1.427	0.00005
S	148	N148I	aAc	aTc	1	1	B.1.429	0.000024
S	148	N148N	aaC	aaT	1	1	B.1.459	0.004082
S	148	N148S	aAc	aGc	1	1	B.1.466.2	0.000391
S	148	N148T	aAc	aCc	1	1	B.1.497	0.000315
S	148	N148N	aaC	aaT	1	1	B.1.499	0.00105
S	148	N148del2	aAC	a--	1	1	B.1.526	0.000024
S	148	N148N	aaC	aaT	1	1	B.1.532	0.006211
S	148	N148N	aaC	aaT	1	1	B.1.551	0.00129
S	148	N148S	aAc	aGc	1	1	B.1.561	0.000397
S	148	N148N	aaC	aaT	1	1	B.1.576	0.000907
S	148	N148X	AaC	TaA	1	1	B.1.576	0.000907
S	148	N148K	aaC	aaA	1	1	B.1.582	0.000491
S	148	N148D	Aac	Gac	1	1	B.1.595	0.000261
S	148	N148T	aAc	aCc	1	1	B.1.596	0.000087
S	148	N148N	aaC	aaT	1	1	B.1.599	0.00365
S	148	N148S	aAc	aGc	1	1	B.1.617.1	0.000129
S	148	N148I	aAc	aTc	1	1	B.1.617.1	0.000129
S	148	N148L	AAc	CTc	1	1	B.1.617.2	0.000004
S	148	N148C	AAc	TGc	1	1	B.1.617.2	0.000004
S	148	N148K	aaC	aaA	1	1	B.1.617.2	0.000004
S	148	N148R	aAC	aGA	1	1	B.1.617.2	0.000004
S	148	N148K	aaC	aaA	1	1	B.1.618	0.004032
S	148	N148H	Aac	Cac	1	1	B.1.620	0.000946
S	148	N148del	AAC	---	1	1	B.1.620	0.000946
S	148	N148N	aaC	aaT	1	1	B.1.621.1	0.000506
S	148	N148T	aAc	aCc	1	1	B.1.631	0.003367
S	148	N148K	aaC	aaA	1	1	B.1.637	0.000073
S	148	N148T	aAc	aCc	1	1	B.1.81	0.021277
S	148	N148D	Aac	Gac	1	1	B.3	0.000831
S	148	N148T	aAc	aCc	1	1	B.56	0.028571
S	148	N148N	aaC	aaT	1	1	B.6	0.00091
S	148	N148G	AAC	GGG	1	1	B.6	0.00091
S	148	N148N	aaC	aaT	1	1	B.6.1	0.026316
S	148	N148N	aaC	aaT	1	1	C.16	0.00106
S	148	N148S	aAc	aGc	1	1	C.18	0.002591
S	148	N148N	aaC	aaT	1	1	C.26	0.007353
S	148	N148del	AAC	---	1	1	C.36	0.000911
S	148	N148Y	Aac	Tac	1	1	C.37.1	0.002618
S	148	N148D	Aac	Gac	1	1	D.2	0.000075
S	148	N148Y	Aac	Tac	1	1	P.1.1	0.000318
S	148	N148N	aaC	aaT	1	1	P.1.12	0.000484
S	148	N148S	aAc	aGc	1	1	P.1.14	0.000048
S	148	N148T	aAc	aCc	1	1	P.1.15	0.000232
S	148	N148N	aaC	aaT	1	1	P.1.2	0.001156
S	148	N148K	aaC	aaA	1	1	P.1.6	0.001946
S	148	N148T	aAc	aCc	1	1	P.2	0.000187
S	148	N148del	AAC	---	1	1	P.3	0.001595
S	148	N148S	aAc	aGc	1	1	Q.1	0.000126
S	148	N148del	AAC	---	1	1	Q.2	0.000613
S	148	N148S	aAc	aGc	1	1	Q.4	0.000455
S	148	N148Y	Aac	Tac	1	1	Q.4	0.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.