CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 146 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S146H146deldelCAC---970970121998-22000

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S146H146delCAC---970970All0.000186
S146H146delCAC---201201B.1.6180.810484
S146H146delCAC---173173B.1.1.70.000155
S146H146delCAC---7777AY.40.00012
S146H146delCAC---5050AY.1020.001326
S146H146delCAC---5050AY.430.000222
S146H146delCAC---4444C.370.005107
S146H146delCAC---2626AY.250.000156
S146H146delCAC---2323AY.440.00014
S146H146delCAC---2121B.1.20.000185
S146H146delCAC---2121B.1.617.20.000079
S146H146delCAC---1717B.1.5260.0004
S146H146delCAC---1616AY.4.20.000347
S146H146delCAC---1414B.1.5820.006869
S146H146delCAC---1313B.1.6210.001151
S146H146delCAC---1212B.10.00011
S146H146delCAC---1010AY.116.10.003114
S146H146delCAC---1010AY.420.000402
S146H146delCAC---1010P.10.000158
S146H146delCAC---88AY.390.000198
S146H146delCAC---77B.1.1600.000218
S146H146delCAC---66B.1.10.000109
S146H146delCAC---55AY.34.10.00255
S146H146delCAC---55AY.4.2.10.000745
S146H146delCAC---55B.1.3510.000149
S146H146delCAC---55B.1.617.10.000645
S146H146delCAC---44AY.1000.000184
S146H146delCAC---44AY.1030.000025
S146H146delCAC---44AY.1190.000141
S146H146delCAC---44AY.29.10.000882
S146H146delCAC---44AY.70.000784
S146H146delCAC---44B.1.1770.000053
S146H146delCAC---33AY.1010.001471
S146H146delCAC---33AY.1200.000112
S146H146delCAC---33AY.200.000117
S146H146delCAC---33B.1.1.2840.000322
S146H146delCAC---33B.1.3110.000824
S146H146delCAC---33B.1.6370.000219
S146H146delCAC---33P.1.150.000697
S146H146delCAC---220.111111
S146H146delCAC---22A.270.003311
S146H146delCAC---22AY.1080.002205
S146H146delCAC---22AY.1160.000574
S146H146delCAC---22AY.270.000129
S146H146delCAC---22AY.290.000032
S146H146delCAC---22AY.30.00002
S146H146delCAC---22AY.330.000134
S146H146delCAC---22AY.360.000296
S146H146delCAC---22AY.4.50.000215
S146H146delCAC---22AY.460.000208
S146H146delCAC---22AY.620.000871
S146H146delCAC---22AY.650.001066
S146H146delCAC---22AY.7.20.001119
S146H146delCAC---22AY.90.000135
S146H146delCAC---22AY.98.10.000097
S146H146delCAC---22AY.990.002099
S146H146delCAC---22AZ.50.007018
S146H146delCAC---22B.1.1.3110.000716
S146H146delCAC---22B.1.1.3180.000604
S146H146delCAC---22B.1.2430.000139
S146H146delCAC---22B.1.258.170.000208
S146H146delCAC---22B.1.390.007812
S146H146delCAC---22B.1.4090.001563
S146H146delCAC---22B.1.5090.001732
S146H146delCAC---22B.1.5960.000174
S146H146delCAC---22P.1.110.020408
S146H146delCAC---11A0.000387
S146H146delCAC---11A.190.009434
S146H146delCAC---11A.2.50.000499
S146H146delCAC---11AY.1070.000466
S146H146delCAC---11AY.1090.00074
S146H146delCAC---11AY.1170.000085
S146H146delCAC---11AY.1180.000063
S146H146delCAC---11AY.120.20.001285
S146H146delCAC---11AY.1210.000135
S146H146delCAC---11AY.4.10.000737
S146H146delCAC---11AY.450.000122
S146H146delCAC---11AY.470.000031
S146H146delCAC---11AY.50.000021
S146H146delCAC---11AY.5.30.000337
S146H146delCAC---11AY.600.000938
S146H146delCAC---11AY.730.000665
S146H146delCAC---11AY.750.000056
S146H146delCAC---11AY.780.001541
S146H146delCAC---11AY.840.000437
S146H146delCAC---11AY.850.000427
S146H146delCAC---11AY.9.20.000037
S146H146delCAC---11AY.99.10.001553
S146H146delCAC---11AZ.20.000821
S146H146delCAC---11B.1.1.1390.022727
S146H146delCAC---11B.1.1390.000733
S146H146delCAC---11B.1.160.230.004831
S146H146delCAC---11B.1.160.300.002976
S146H146delCAC---11B.1.177.40.000211
S146H146delCAC---11B.1.177.870.000728
S146H146delCAC---11B.1.214.40.009091
S146H146delCAC---11B.1.2790.000514
S146H146delCAC---11B.1.3910.001127
S146H146delCAC---11B.1.4150.014286
S146H146delCAC---11B.1.5650.00081
S146H146delCAC---11B.1.5850.027778
S146H146delCAC---11B.1.6200.000946
S146H146delCAC---11C.360.000911
S146H146delCAC---11C.37.10.002618
S146H146delCAC---11P.1.20.001156
S146H146delCAC---11P.20.000187
S146H146delCAC---11P.30.001595
S146H146delCAC---11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.