CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 145 & Codon = Gac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S145Y145DnonsynTacGac8258090.98060621995-21997

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S145Y145DTacGac809825All0.000155
S145Y145DTacGac229229AY.40.000356
S145Y145DTacGac90104B.1.1.70.000081
S145Y145DTacGac5656B.10.000513
S145Y145DTacGac4646B.1.1770.000606
S145Y145DTacGac2626AY.260.000736
S145Y145DTacGac1920P.10.000299
S145Y145DTacGac1919P.1.140.000908
S145Y145DTacGac1818AY.1030.000112
S145Y145DTacGac1616B.1.10.00029
S145Y145DTacGac1414B.1.4290.000329
S145Y145DTacGac1414B.1.5260.000329
S145Y145DTacGac1313AY.250.000078
S145Y145DTacGac1313B.1.3510.000386
S145Y145DTacGac1111B.1.1.370.002122
S145Y145DTacGac99AY.1000.000414
S145Y145DTacGac99B.1.20.000079
S145Y145DTacGac88B.1.2580.000532
S145Y145DTacGac88B.1.4270.000404
S145Y145DTacGac88B.1.6210.000708
S145Y145DTacGac77B.1.5740.015054
S145Y145DTacGac77B.1.617.10.000903
S145Y145DTacGac77P.1.70.002235
S145Y145DTacGac66AY.430.000027
S145Y145DTacGac66AY.440.000037
S145Y145DTacGac66B.1.1.5190.000238
S145Y145DTacGac66P.1.150.001394
S145Y145DTacGac55AY.30.00005
S145Y145DTacGac55AY.98.10.000242
S145Y145DTacGac55B.1.351.30.004382
S145Y145DTacGac44AY.4.40.001637
S145Y145DTacGac44AY.460.000416
S145Y145DTacGac44AY.750.000224
S145Y145DTacGac44B.1.1.2180.030769
S145Y145DTacGac44B.1.1600.000125
S145Y145DTacGac44B.1.177.810.000757
S145Y145DTacGac44B.1.6370.000292
S145Y145DTacGac44P.1.100.001078
S145Y145DTacGac33AY.390.000074
S145Y145DTacGac33AY.4.2.10.000447
S145Y145DTacGac33AY.650.001599
S145Y145DTacGac33AY.980.000237
S145Y145DTacGac33B.1.177.580.003995
S145Y145DTacGac33B.1.177.620.003576
S145Y145DTacGac33B.1.5960.000261
S145Y145DTacGac33B.1.617.20.000011
S145Y145DTacGac33B.1.621.10.001517
S145Y145DTacGac22AY.1020.000053
S145Y145DTacGac22AY.9.20.000073
S145Y145DTacGac22B.1.1.3180.000604
S145Y145DTacGac22B.1.1.3680.006173
S145Y145DTacGac22B.1.3240.00321
S145Y145DTacGac22B.1.3670.001585
S145Y145DTacGac22B.1.438.10.000215
S145Y145DTacGac22P.1.60.003891
S145Y145DTacGac22P.20.000373
S145Y145DTacGac11AU.30.00211
S145Y145DTacGac11AY.100.00053
S145Y145DTacGac11AY.1060.000335
S145Y145DTacGac11AY.1070.000466
S145Y145DTacGac11AY.120.000316
S145Y145DTacGac11AY.1200.000037
S145Y145DTacGac11AY.3.10.000085
S145Y145DTacGac11AY.350.000233
S145Y145DTacGac11AY.39.10.00004
S145Y145DTacGac11AY.4.20.000022
S145Y145DTacGac11AY.450.000122
S145Y145DTacGac11AY.50.000021
S145Y145DTacGac11AY.610.000105
S145Y145DTacGac11AY.620.000436
S145Y145DTacGac11AY.740.000116
S145Y145DTacGac11AY.9.10.000084
S145Y145DTacGac11AY.920.000287
S145Y145DTacGac11AY.950.000761
S145Y145DTacGac11B.1.1.2100.005714
S145Y145DTacGac11B.1.1.2190.005
S145Y145DTacGac11B.1.1.250.000569
S145Y145DTacGac11B.1.1.2630.001558
S145Y145DTacGac11B.1.1.2690.001353
S145Y145DTacGac11B.1.1.3160.000925
S145Y145DTacGac11B.1.1.3720.000689
S145Y145DTacGac11B.1.1.4160.000905
S145Y145DTacGac11B.1.1.5280.004808
S145Y145DTacGac11B.1.1.630.000386
S145Y145DTacGac11B.1.1050.009615
S145Y145DTacGac11B.1.177.40.000211
S145Y145DTacGac11B.1.177.510.004566
S145Y145DTacGac11B.1.2340.000132
S145Y145DTacGac11B.1.258.220.002667
S145Y145DTacGac11B.1.2650.001271
S145Y145DTacGac11B.1.351.20.000303
S145Y145DTacGac11B.1.360.000146
S145Y145DTacGac11B.1.4590.004082
S145Y145DTacGac11B.1.5250.000113
S145Y145DTacGac11B.1.5650.00081
S145Y145DTacGac11B.1.5670.003333
S145Y145DTacGac11B.1.5870.001898
S145Y145DTacGac11B.310.003731
S145Y145DTacGac11C.180.002591
S145Y145DTacGac11N.100.029412
S145Y145DTacGac11P.1.10.000318
S145Y145DTacGac11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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