CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 139

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S139P139PsynccAccT11525840.50694421977-21979
S139P139PsynccAccG11525220.45312521977-21979
S139P139PsynccAccC1152460.039930621977-21979
S139P139deldelCCA---943943121977-21979
S139P139SnonsynCcaTca1441400.97222221977-21979
S139P139SnonsynCcATcC14430.020833321977-21979
S139P139SnonsynCcATcT14410.0069444421977-21979
S139P139LnonsyncCacTa75700.93333321977-21979
S139P139LnonsyncCAcTC7530.0421977-21979
S139P139LnonsynCCaTTa7510.013333321977-21979
S139P139LnonsyncCAcTT7510.013333321977-21979
S139P139TnonsynCcaAca27260.96296321977-21979
S139P139TnonsynCcAAcT2710.03703721977-21979
S139P139QnonsyncCacAa1616121977-21979
S139P139del2delcCAc--1250.41666721977-21979
S139P139del2delCCa--a1240.33333321977-21979
S139P139del2delCCA--N1230.2521977-21979
S139P139del1delccAcc-1150.45454521977-21979
S139P139del1delCca-ca1130.27272721977-21979
S139P139del1delCCA-NN1120.18181821977-21979
S139P139del1delCCa-Aa1110.090909121977-21979
S139P139RnonsyncCacGa760.85714321977-21979
S139P139RnonsyncCAcGG710.14285721977-21979
S139P139AnonsynCcaGca540.821977-21979
S139P139AnonsynCcAGcT510.221977-21979
S139P139HnonsyncCAcAT44121977-21979
S139P139XnonsynCCaTAa210.521977-21979
S139P139XnonsynCCATAG210.521977-21979
S139P139FnonsynCCATTC11121977-21979
S139P139YnonsynCCATAT11121977-21979
S139P139InonsynCCaATa11121977-21979

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S139P139PccAccT5841152All0.000112
S139P139PccAccG5221152All0.0001
S139P139PccAccC461152All0.000009
S139P139delCCA---943943All0.00018
S139P139PccAccT339354AY.40.000528
S139P139PccAccG15354AY.40.000023
S139P139PccAccT121192B.1.1.70.000108
S139P139PccAccG71192B.1.1.70.000064
S139P139delCCA---160160AT.10.820513
S139P139SCcaTca140144All0.000027
S139P139SCcATcC3144All0.000001
S139P139SCcATcT1144All0
S139P139PccAccG106106B.1.177.810.020068
S139P139delCCA---100100C.380.806452
S139P139delCCA---9898P.10.001544
S139P139PccAccG9393AY.30.000925
S139P139LcCacTa7075All0.000013
S139P139LcCAcTC375All0.000001
S139P139LCCaTTa175All0
S139P139LcCAcTT175All0
S139P139PccAccG6666AY.750.003697
S139P139delCCA---6363B.1.1.70.000056
S139P139delCCA---6060AY.40.000093
S139P139delCCA---4242B.1.4290.000988
S139P139delCCA---3939AY.430.000173
S139P139PccAccC2333B.10.000211
S139P139PccAccT533B.10.000046
S139P139PccAccG533B.10.000046
S139P139SCcaTca3333B.1.1.70.00003
S139P139PccAccT2929P.1.31
S139P139TCcaAca2627All0.000005
S139P139TCcAAcT127All0
S139P139PccAccG2424AY.3.10.002046
S139P139PccAccG2324AY.440.00014
S139P139PccAccT124AY.440.000006
S139P139PccAccG1523B.1.617.20.000056
S139P139PccAccT823B.1.617.20.00003
S139P139delCCA---2222B.10.000202
S139P139delCCA---2222B.1.1770.00029
S139P139delCCA---2121B.1.5760.019039
S139P139LcCacTa2020B.1.1.70.000018
S139P139SCcaTca1818AY.40.000028
S139P139PccAccT1618B.1.1770.000211
S139P139PccAccG218B.1.1770.000026
S139P139QcCacAa1616All0.000003
S139P139delCCA---1616AY.4.20.000347
S139P139delCCA---1515AY.440.000091
S139P139PccAccG1314AY.430.000058
S139P139PccAccT114AY.430.000004
S139P139delCCA---1313AY.250.000078
S139P139del2cCAc--512All0.000001
S139P139del2CCa--a412All0.000001
S139P139del2CCA--N312All0.000001
S139P139delCCA---1212AY.1020.000318
S139P139PccAccC612AY.260.00017
S139P139PccAccG512AY.260.000142
S139P139PccAccT112AY.260.000028
S139P139PccAccT1112B.1.4290.000259
S139P139PccAccG112B.1.4290.000024
S139P139del1ccAcc-511All0.000001
S139P139del1Cca-ca311All0.000001
S139P139del1CCA-NN211All0
S139P139del1CCa-Aa111All0
S139P139PccAccG711B.1.20.000062
S139P139PccAccT411B.1.20.000035
S139P139SCcaTca1111B.1.4290.000259
S139P139delCCA---1111P.1.140.000526
S139P139delCCA---1010B.1.20.000088
S139P139delCCA---1010B.1.617.20.000038
S139P139PccAccC49AY.1030.000025
S139P139PccAccT39AY.1030.000019
S139P139PccAccG29AY.1030.000012
S139P139delCCA---99B.1.1600.000281
S139P139delCCA---88B.1.10.000145
S139P139PccAccC58B.1.177.210.000382
S139P139PccAccT38B.1.177.210.000229
S139P139PccAccG68B.1.3510.000178
S139P139PccAccC18B.1.3510.00003
S139P139PccAccT18B.1.3510.00003
S139P139PccAccT88B.1.360.001167
S139P139RcCacGa67All0.000001
S139P139RcCAcGG17All0
S139P139SCcaTca77AY.4.20.000152
S139P139delCCA---77AY.420.000282
S139P139delCCA---77AY.90.000473
S139P139PccAccG77B.1.1.4160.006335
S139P139TCcaAca77B.1.1.70.000006
S139P139delCCA---77B.1.3510.000208
S139P139PccAccC37P.10.000047
S139P139PccAccG27P.10.000032
S139P139PccAccT27P.10.000032
S139P139LcCacTa66AY.40.000009
S139P139SCcaTca66AY.440.000037
S139P139SCcaTca66AY.680.001642
S139P139LcCacTa66B.1.4290.000141
S139P139delCCA---66B.1.5260.000141
S139P139ACcaGca45All0.000001
S139P139ACcAGcT15All0
S139P139delCCA---55AY.290.000079
S139P139TCcaAca55AY.40.000008
S139P139delCCA---55AY.4.2.10.000745
S139P139del1ccAcc-35B.1.1.70.000003
S139P139del1CCA-NN15B.1.1.70.000001
S139P139del1Cca-ca15B.1.1.70.000001
S139P139delCCA---55B.1.2340.00066
S139P139delCCA---440.222222
S139P139delCCA---44A.2.50.001996
S139P139HcCAcAT44All0.000001
S139P139delCCA---44AY.1030.000025
S139P139PccAccG44AY.1170.000338
S139P139delCCA---44AY.1190.000141
S139P139PccAccG44AY.250.000024
S139P139delCCA---44AY.30.00004
S139P139PccAccG44AY.620.001743
S139P139QcCacAa44B.10.000037
S139P139SCcaTca44B.1.10.000073
S139P139PccAccG44B.1.10.000073
S139P139PccAccG34B.1.1.2220.000612
S139P139PccAccT14B.1.1.2220.000204
S139P139LcCAcTT14B.1.2210.000071
S139P139LCCaTTa14B.1.2210.000071
S139P139LcCAcTC14B.1.2210.000071
S139P139LcCacTa14B.1.2210.000071
S139P139LcCacTa44B.1.3510.000119
S139P139LcCacTa44B.1.4270.000202
S139P139SCcaTca44B.1.4270.000202
S139P139PccAccT34N.50.0053
S139P139PccAccG14N.50.001767
S139P139LcCacTa33AY.1110.000549
S139P139delCCA---33AY.1200.000112
S139P139PccAccT23AY.230.000139
S139P139PccAccG13AY.230.00007
S139P139SCcaTca33AY.250.000018
S139P139SCcaTca33AY.30.00003
S139P139delCCA---33AY.34.10.00153
S139P139RcCacGa23AY.40.000003
S139P139RcCAcGG13AY.40.000002
S139P139delCCA---33AY.470.000093
S139P139PccAccT33AY.60.000123
S139P139PccAccT33B.1.1.1890.004539
S139P139delCCA---33B.1.1.370.000579
S139P139PccAccG33B.1.1.4560.166667
S139P139QcCacAa33B.1.1.70.000003
S139P139LcCacTa33B.1.1770.00004
S139P139SCcATcC23B.1.2210.000142
S139P139PccAccG23B.1.2210.000142
S139P139PccAccC13B.1.2210.000071
S139P139SCcaTca13B.1.2210.000071
S139P139delCCA---33B.1.2430.000209
S139P139PccAccG33B.1.2430.000209
S139P139delCCA---33B.1.3190.009146
S139P139delCCA---33B.1.360.000438
S139P139delCCA---33B.1.4270.000151
S139P139TCcaAca33B.1.5250.000339
S139P139PccAccG33B.1.5260.000071
S139P139delCCA---33B.1.5610.001191
S139P139SCcaTca33B.1.617.20.000011
S139P139LcCacTa23B.1.617.20.000008
S139P139LcCAcTC13B.1.617.20.000004
S139P139delCCA---33B.1.6210.000266
S139P139SCcaTca33D.20.000225
S139P139SCcaTca23P.10.000032
S139P139SCcATcT13P.10.000016
S139P139delCCA---33P.1.160.001122
S139P139PccAccT120.055556
S139P139PccAccG120.055556
S139P139XCCaTAa12All0
S139P139XCCATAG12All0
S139P139SCcaTca22AY.1030.000012
S139P139delCCA---22AY.1080.002205
S139P139PccAccG12AY.340.000097
S139P139PccAccT12AY.340.000097
S139P139delCCA---22AY.4.50.000215
S139P139del2cCAc--12AY.430.000004
S139P139del2CCa--a12AY.430.000004
S139P139RcCacGa22AY.440.000012
S139P139delCCA---22AY.460.000208
S139P139delCCA---22AY.650.001066
S139P139delCCA---22AY.740.000231
S139P139delCCA---22AY.750.000112
S139P139PccAccT22AY.980.000158
S139P139delCCA---22AY.990.002099
S139P139delCCA---22AZ.50.007018
S139P139LcCacTa22B.10.000018
S139P139SCcaTca22B.10.000018
S139P139TCcaAca12B.10.000009
S139P139TCcAAcT12B.10.000009
S139P139delCCA---22B.1.1.3110.000716
S139P139SCcaTca22B.1.1770.000026
S139P139delCCA---22B.1.177.120.000303
S139P139PccAccT12B.1.177.440.000519
S139P139PccAccC12B.1.177.440.000519
S139P139delCCA---22B.1.177.570.000562
S139P139SCcaTca22B.1.20.000018
S139P139delCCA---22B.1.2410.001623
S139P139delCCA---22B.1.36.380.003284
S139P139PccAccT22B.1.416.10.003125
S139P139delCCA---22B.1.5950.000522
S139P139delCCA---22B.1.5960.000174
S139P139delCCA---22B.1.6200.001892
S139P139SCcaTca22B.1.6210.000177
S139P139SCcaTca12B.1.90.006173
S139P139SCcATcC12B.1.90.006173
S139P139TCcaAca22B.60.00182
S139P139delCCA---22C.36.3.10.005435
S139P139delCCA---22C.370.000232
S139P139delCCA---22P.1.100.000539
S139P139delCCA---22P.1.150.000465
S139P139delCCA---22P.1.170.000324
S139P139delCCA---22P.30.00319
S139P139ACcaGca11A0.000387
S139P139delCCA---11A.10.000282
S139P139del2CCA--N11AC.10.037037
S139P139delCCA---11AD.20.000219
S139P139FCCATTC11All0
S139P139YCCATAT11All0
S139P139ICCaATa11All0
S139P139PccAccG11AY.1000.000046
S139P139del2cCAc--11AY.1010.00049
S139P139del2CCA--N11AY.1020.000027
S139P139TCcaAca11AY.1020.000027
S139P139PccAccG11AY.1020.000027
S139P139delCCA---11AY.1060.000335
S139P139delCCA---11AY.1070.000466
S139P139SCcaTca11AY.1080.001103
S139P139delCCA---11AY.1090.00074
S139P139delCCA---11AY.1180.000063
S139P139delCCA---11AY.120.000316
S139P139PccAccT11AY.1200.000037
S139P139delCCA---11AY.120.20.001285
S139P139delCCA---11AY.1210.000135
S139P139PccAccT11AY.140.000088
S139P139TCcaAca11AY.190.00114
S139P139PccAccG11AY.20.000356
S139P139SCcaTca11AY.200.000039
S139P139LcCacTa11AY.200.000039
S139P139del2CCA--N11AY.210.001898
S139P139TCcaAca11AY.210.001898
S139P139SCcaTca11AY.230.00007
S139P139del2cCAc--11AY.250.000006
S139P139delCCA---11AY.260.000028
S139P139delCCA---11AY.270.000065
S139P139PccAccG11AY.29.10.000221
S139P139delCCA---11AY.29.10.000221
S139P139SCcaTca11AY.330.000067
S139P139delCCA---11AY.330.000067
S139P139del1CCa-Aa11AY.340.000097
S139P139delCCA---11AY.350.000233
S139P139PccAccG11AY.360.000148
S139P139delCCA---11AY.360.000148
S139P139delCCA---11AY.390.000025
S139P139del1CCA-NN11AY.390.000025
S139P139SCcaTca11AY.39.10.00004
S139P139del2cCAc--11AY.40.000002
S139P139delCCA---11AY.4.10.000737
S139P139del1ccAcc-11AY.4.2.10.000149
S139P139PccAccT11AY.4.40.000409
S139P139LcCacTa11AY.4.50.000107
S139P139SCcaTca11AY.4.50.000107
S139P139SCcaTca11AY.420.00004
S139P139TCcaAca11AY.430.000004
S139P139XCCATAG11AY.430.000004
S139P139LcCacTa11AY.440.000006
S139P139TCcaAca11AY.440.000006
S139P139PccAccG11AY.450.000122
S139P139delCCA---11AY.450.000122
S139P139PccAccG11AY.46.60.000072
S139P139PccAccG11AY.470.000031
S139P139del2CCa--a11AY.50.000021
S139P139SCcaTca11AY.50.000021
S139P139delCCA---11AY.50.000021
S139P139PccAccG11AY.50.000021
S139P139QcCacAa11AY.530.000288
S139P139HcCAcAT11AY.550.000917
S139P139QcCacAa11AY.580.000907
S139P139QcCacAa11AY.60.000041
S139P139delCCA---11AY.600.000938
S139P139delCCA---11AY.620.000436
S139P139PccAccT11AY.630.000387
S139P139ACcAGcT11AY.690.000187
S139P139delCCA---11AY.7.20.000559
S139P139LcCacTa11AY.700.000209
S139P139delCCA---11AY.730.000665
S139P139ICCaATa11AY.740.000116
S139P139delCCA---11AY.780.001541
S139P139PccAccT11AY.80.000606
S139P139delCCA---11AY.840.000437
S139P139LcCAcTC11AY.850.000427
S139P139delCCA---11AY.850.000427
S139P139delCCA---11AY.9.20.000037
S139P139PccAccG11AY.9.20.000037
S139P139ACcaGca11AY.900.000684
S139P139PccAccT11AY.920.000287
S139P139delCCA---11AY.920.000287
S139P139delCCA---11AY.98.10.000048
S139P139QcCacAa11AY.98.10.000048
S139P139delCCA---11AY.99.10.001553
S139P139PccAccT11AY.99.20.000092
S139P139SCcaTca11B0.000128
S139P139del2CCa--a11B.1.10.000018
S139P139delCCA---11B.1.1.1390.022727
S139P139delCCA---11B.1.1.1700.001247
S139P139SCcaTca11B.1.1.1760.000439
S139P139PccAccG11B.1.1.2160.00089
S139P139PccAccT11B.1.1.250.000569
S139P139PccAccG11B.1.1.280.000311
S139P139delCCA---11B.1.1.2840.000107
S139P139PccAccG11B.1.1.2980.000862
S139P139delCCA---11B.1.1.3060.000438
S139P139delCCA---11B.1.1.3180.000302
S139P139QcCacAa11B.1.1.3260.001761
S139P139SCcaTca11B.1.1.3690.000446
S139P139delCCA---11B.1.1.390.00051
S139P139delCCA---11B.1.1.3970.002252
S139P139delCCA---11B.1.1.410.006329
S139P139SCcaTca11B.1.1.4230.0625
S139P139SCcaTca11B.1.1.4450.037037
S139P139LcCacTa11B.1.1.5190.00004
S139P139LcCacTa11B.1.1.5240.020833
S139P139delCCA---11B.1.1.5280.004808
S139P139HcCAcAT11B.1.1.70.000001
S139P139delCCA---11B.1.1110.001175
S139P139PccAccG11B.1.130.002375
S139P139delCCA---11B.1.160.230.004831
S139P139del1Cca-ca11B.1.1770.000013
S139P139TCcaAca11B.1.1770.000013
S139P139delCCA---11B.1.177.110.001698
S139P139LcCacTa11B.1.177.160.000664
S139P139SCcaTca11B.1.177.170.000821
S139P139LcCacTa11B.1.177.300.002513
S139P139delCCA---11B.1.177.40.000211
S139P139PccAccG11B.1.177.410.0025
S139P139delCCA---11B.1.177.420.000894
S139P139delCCA---11B.1.177.450.000381
S139P139delCCA---11B.1.177.50.001242
S139P139delCCA---11B.1.177.540.000606
S139P139PccAccG11B.1.177.570.000281
S139P139PccAccG11B.1.177.600.000218
S139P139PccAccG11B.1.177.620.001192
S139P139delCCA---11B.1.177.760.002494
S139P139delCCA---11B.1.177.810.000189
S139P139SCcaTca11B.1.177.810.000189
S139P139LcCacTa11B.1.177.860.000183
S139P139delCCA---11B.1.177.860.000183
S139P139delCCA---11B.1.177.870.000728
S139P139LcCacTa11B.1.20.000009
S139P139LcCacTa11B.1.2060.000816
S139P139FCCATTC11B.1.2210.000071
S139P139delCCA---11B.1.2210.000071
S139P139delCCA---11B.1.2220.001692
S139P139delCCA---11B.1.2320.000537
S139P139ACcaGca11B.1.2340.000132
S139P139PccAccG11B.1.2340.000132
S139P139SCcaTca11B.1.2370.004975
S139P139LcCacTa11B.1.2430.00007
S139P139SCcaTca11B.1.2430.00007
S139P139SCcaTca11B.1.2580.000067
S139P139LcCacTa11B.1.2580.000067
S139P139delCCA---11B.1.258.110.000396
S139P139SCcaTca11B.1.258.120.007874
S139P139delCCA---11B.1.258.140.00098
S139P139LcCacTa11B.1.2790.000514
S139P139LcCacTa11B.1.2980.002114
S139P139TCcaAca11B.1.3110.000275
S139P139SCcaTca11B.1.3510.00003
S139P139PccAccG11B.1.36.290.000517
S139P139delCCA---11B.1.36.310.001751
S139P139delCCA---11B.1.370.014706
S139P139delCCA---11B.1.3800.006623
S139P139delCCA---11B.1.3960.000706
S139P139LcCacTa11B.1.3960.000706
S139P139delCCA---11B.1.4000.000429
S139P139RcCacGa11B.1.4070.035714
S139P139SCcaTca11B.1.4090.000781
S139P139delCCA---11B.1.4160.001269
S139P139PccAccT11B.1.4240.008065
S139P139PccAccG11B.1.4270.00005
S139P139RcCacGa11B.1.4290.000024
S139P139QcCacAa11B.1.4290.000024
S139P139SCcaTca11B.1.4650.003802
S139P139PccAccT11B.1.4990.00105
S139P139LcCacTa11B.1.5260.000024
S139P139del2cCAc--11B.1.5260.000024
S139P139PccAccT11B.1.5750.000303
S139P139PccAccG11B.1.5820.000491
S139P139delCCA---11B.1.5850.027778
S139P139delCCA---11B.1.5870.001898
S139P139del1Cca-ca11B.1.5950.000261
S139P139QcCacAa11B.1.5960.000087
S139P139delCCA---11B.1.596.10.009346
S139P139PccAccG11B.1.5970.00463
S139P139delCCA---11B.1.6120.002653
S139P139QcCacAa11B.1.617.10.000129
S139P139ACcaGca11B.1.617.10.000129
S139P139HcCAcAT11B.1.617.20.000004
S139P139PccAccT11B.1.6300.005236
S139P139SCcaTca11B.1.6370.000073
S139P139delCCA---11B.1.6370.000073
S139P139PccAccC11B.1.90.006173
S139P139delCCA---11B.1.930.000934
S139P139delCCA---11B.400.000364
S139P139PccAccG11C.36.10.004149
S139P139LcCacTa11D.20.000075
S139P139del2CCa--a11P.10.000016
S139P139HcCAcAT11P.10.000016
S139P139YCCATAT11P.10.000016
S139P139QcCacAa11P.10.000016
S139P139XCCaTAa11P.10.000016
S139P139PccAccC11P.1.10.000318
S139P139delCCA---11P.1.10.000318
S139P139delCCA---11P.1.120.000484
S139P139delCCA---11P.1.130.000898
S139P139SCcaTca11P.1.140.000048
S139P139TCcaAca11P.30.001595
S139P139del1ccAcc-11Q.20.000613
S139P139LcCacTa11Q.30.000145
S139P139delCCA---11Q.70.001111
S139P139PccAccG11R.10.00009
S139P139SCcaTca11Z.10.00289