CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 137

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S137N137NsynaaTaaC33273327121971-21973
S137N137deldelAAT---501501121971-21973
S137N137SnonsynaAtaGt258258121971-21973
S137N137KnonsynaaTaaA1581290.81645621971-21973
S137N137KnonsynaaTaaG158290.18354421971-21973
S137N137TnonsynaAtaCt108108121971-21973
S137N137DnonsynAatGat9898121971-21973
S137N137YnonsynAatTat29280.96551721971-21973
S137N137YnonsynAaTTaC2910.034482821971-21973
S137N137InonsynaAtaTt23220.95652221971-21973
S137N137del1delaaTaa-2390.39130421971-21973
S137N137del1delAat-at2390.39130421971-21973
S137N137del1delAAT-NN2330.13043521971-21973
S137N137InonsynaATaTA2310.043478321971-21973
S137N137del1delAAt-Gt2310.043478321971-21973
S137N137del1delAaT-aA2310.043478321971-21973
S137N137del2delaATa--16120.7521971-21973
S137N137del2delAAt--t1640.2521971-21973
S137N137HnonsynAatCat77121971-21973
S137N137XnonsynAaTTaA320.66666721971-21973
S137N137XnonsynAaTTaG310.33333321971-21973
S137N137GnonsynAAtGGt22121971-21973
S137N137LnonsynAATTTG210.521971-21973
S137N137LnonsynAATTTA210.521971-21973
S137N137FnonsynAAtTTt11121971-21973
S137N137CnonsynAAtTGt11121971-21973
S137N137RnonsynaATaGG11121971-21973
S137N137MnonsynaATaTG11121971-21973

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S137N137NaaTaaC33273327All0.000636
S137N137NaaTaaC17581758B.1.617.20.00662
S137N137NaaTaaC585585AY.40.000911
S137N137delAAT---501501All0.000096
S137N137SaAtaGt258258All0.000049
S137N137NaaTaaC222222AY.1020.005886
S137N137delAAT---160160AT.10.820513
S137N137KaaTaaA129158All0.000025
S137N137KaaTaaG29158All0.000006
S137N137NaaTaaC117117B.1.1.70.000105
S137N137TaAtaCt108108All0.000021
S137N137DAatGat9898All0.000019
S137N137KaaTaaA6163B.1.1.70.000055
S137N137KaaTaaG263B.1.1.70.000002
S137N137SaAtaGt6161AY.470.001897
S137N137NaaTaaC5555B.1.2340.007257
S137N137TaAtaCt5555B.1.617.20.000207
S137N137DAatGat5252AY.250.000313
S137N137NaaTaaC4646Q.20.028221
S137N137NaaTaaC4242AY.46.40.006909
S137N137delAAT---4141AY.430.000182
S137N137SaAtaGt4040B.1.1.70.000036
S137N137NaaTaaC3636AY.430.000159
S137N137NaaTaaC3636AY.9.20.001322
S137N137NaaTaaC3535AY.1030.000217
S137N137delAAT---3535AY.40.000054
S137N137NaaTaaC3434AY.1170.002874
S137N137TaAtaCt3232AY.430.000142
S137N137YAatTat2829All0.000005
S137N137YAaTTaC129All0
S137N137SaAtaGt2929AY.40.000045
S137N137SaAtaGt2929B.1.6200.027436
S137N137delAAT---2727B.1.1.70.000024
S137N137SaAtaGt2424B.1.617.20.00009
S137N137IaAtaTt2223All0.000004
S137N137del1aaTaa-923All0.000002
S137N137del1Aat-at923All0.000002
S137N137del1AAT-NN323All0.000001
S137N137del1AaT-aA123All0
S137N137IaATaTA123All0
S137N137del1AAt-Gt123All0
S137N137NaaTaaC2323AY.390.000568
S137N137KaaTaaA2222B.1.2430.001531
S137N137NaaTaaC2222B.1.2580.001464
S137N137delAAT---2222B.1.4290.000518
S137N137delAAT---2121B.1.5760.019039
S137N137NaaTaaC1818AY.550.016514
S137N137NaaTaaC1717AY.75.10.003065
S137N137del2aATa--1216All0.000002
S137N137del2AAt--t416All0.000001
S137N137delAAT---1616AY.4.20.000347
S137N137NaaTaaC1616B.1.20.000141
S137N137KaaTaaA1316B.1.617.20.000049
S137N137KaaTaaG316B.1.617.20.000011
S137N137NaaTaaC1515AY.30.000149
S137N137delAAT---1414AY.250.000084
S137N137SaAtaGt1414AY.30.000139
S137N137NaaTaaC1313AY.420.000523
S137N137NaaTaaC1313AY.440.000079
S137N137NaaTaaC1313AY.980.001027
S137N137delAAT---1313B.10.000119
S137N137YAatTat1212B.1.1.70.000011
S137N137delAAT---1212B.1.617.20.000045
S137N137delAAT---1111AY.440.000067
S137N137NaaTaaC1111AY.450.001339
S137N137SaAtaGt1111B.1.1770.000145
S137N137delAAT---1010AY.1020.000265
S137N137NaaTaaC1010AY.1200.000372
S137N137NaaTaaC1010AY.4.20.000217
S137N137NaaTaaC99AY.1080.009923
S137N137SaAtaGt99AY.1190.000318
S137N137NaaTaaC99AY.330.000601
S137N137delAAT---99B.1.6380.473684
S137N137DAatGat88AY.40.000012
S137N137HAatCat77All0.000001
S137N137delAAT---77AY.34.10.00357
S137N137NaaTaaC77AY.50.000145
S137N137delAAT---77AY.90.000473
S137N137KaaTaaG57B.1.4290.000118
S137N137KaaTaaA27B.1.4290.000047
S137N137TaAtaCt66AY.40.000009
S137N137delAAT---66AY.420.000241
S137N137NaaTaaC66AY.98.10.000291
S137N137NaaTaaC66B.1.1.5190.000238
S137N137HAatCat66B.1.1.70.000005
S137N137delAAT---66B.1.1770.000079
S137N137del2aATa--66B.1.1770.000079
S137N137DAatGat66B.1.20.000053
S137N137KaaTaaG46B.1.4270.000202
S137N137KaaTaaA26B.1.4270.000101
S137N137DAatGat66B.1.617.20.000023
S137N137SaAtaGt66P.10.000095
S137N137NaaTaaC55AY.260.000142
S137N137delAAT---55AY.4.2.10.000745
S137N137KaaTaaA35AY.430.000013
S137N137KaaTaaG25AY.430.000009
S137N137NaaTaaC55AY.46.10.005133
S137N137NaaTaaC55AY.750.00028
S137N137NaaTaaC55B.1.6210.000443
S137N137delAAT---440.222222
S137N137NaaTaaC44AY.1100.000451
S137N137NaaTaaC44AY.200.000155
S137N137delAAT---44AY.4.50.00043
S137N137NaaTaaC44AY.46.20.002541
S137N137NaaTaaC44B.10.000037
S137N137DAatGat44B.1.1.70.000004
S137N137NaaTaaC44B.1.1600.000125
S137N137NaaTaaC44B.1.36.360.002408
S137N137NaaTaaC44B.1.466.20.001565
S137N137NaaTaaC44B.1.4950.036364
S137N137NaaTaaC44B.1.5260.000094
S137N137XAaTTaA23All0
S137N137XAaTTaG13All0
S137N137delAAT---33AY.1080.003308
S137N137delAAT---33AY.1190.000106
S137N137delAAT---33AY.1200.000112
S137N137NaaTaaC33AY.120.10.000963
S137N137NaaTaaC33AY.230.000209
S137N137NaaTaaC33AY.250.000018
S137N137del1aaTaa-23AY.250.000012
S137N137del1AAT-NN13AY.250.000006
S137N137NaaTaaC33AY.290.000047
S137N137SaAtaGt33AY.340.000291
S137N137del2AAt--t33AY.34.10.00153
S137N137TaAtaCt33AY.440.000018
S137N137NaaTaaC33AY.46.60.000217
S137N137TaAtaCt33AY.470.000093
S137N137NaaTaaC33AY.5.30.001012
S137N137IaAtaTt33AY.7.10.000338
S137N137NaaTaaC33AY.770.003382
S137N137DAatGat33AY.99.20.000276
S137N137SaAtaGt33B.10.000027
S137N137IaAtaTt33B.1.1.470.016043
S137N137NaaTaaC33B.1.1.500.002037
S137N137SaAtaGt33B.1.1.5190.000119
S137N137TaAtaCt33B.1.1.70.000003
S137N137NaaTaaC33B.1.258.160.00491
S137N137NaaTaaC33B.3.10.004975
S137N137NaaTaaC33P.10.000047
S137N137NaaTaaC22A0.000774
S137N137GAAtGGt22All0
S137N137LAATTTG12All0
S137N137LAATTTA12All0
S137N137DAatGat22AY.1180.000125
S137N137del1aaTaa-12AY.1200.000037
S137N137del1Aat-at12AY.1200.000037
S137N137KaaTaaA12AY.250.000006
S137N137KaaTaaG12AY.250.000006
S137N137delAAT---22AY.30.00002
S137N137IaAtaTt22AY.40.000003
S137N137KaaTaaA22AY.40.000003
S137N137DAatGat22AY.4.20.000043
S137N137KaaTaaG12AY.420.00004
S137N137KaaTaaA12AY.420.00004
S137N137SaAtaGt22AY.430.000009
S137N137YAatTat22AY.430.000009
S137N137DAatGat22AY.430.000009
S137N137IaAtaTt22AY.440.000012
S137N137NaaTaaC22AY.470.000062
S137N137KaaTaaG22AY.5.40.000553
S137N137delAAT---22AY.650.001066
S137N137delAAT---22AY.750.000112
S137N137NaaTaaC22AY.840.000875
S137N137IaAtaTt22AY.850.000854
S137N137NaaTaaC22AY.850.000854
S137N137NaaTaaC22AY.860.00166
S137N137NaaTaaC22AY.950.001522
S137N137delAAT---22AY.990.002099
S137N137SaAtaGt22B.1.10.000036
S137N137delAAT---22B.1.10.000036
S137N137KaaTaaG12B.1.10.000018
S137N137KaaTaaA12B.1.10.000018
S137N137delAAT---22B.1.1.3110.000716
S137N137SaAtaGt22B.1.1.3260.003521
S137N137NaaTaaC22B.1.1.5210.010695
S137N137IaAtaTt22B.1.1.70.000002
S137N137del1AAT-NN12B.1.1.70.000001
S137N137del1Aat-at12B.1.1.70.000001
S137N137NaaTaaC22B.1.1770.000026
S137N137SaAtaGt22B.1.177.120.000303
S137N137delAAT---22B.1.20.000018
S137N137del1Aat-at22B.1.20.000018
S137N137DAatGat22B.1.2210.000142
S137N137XAaTTaG12B.1.2210.000071
S137N137LAATTTG12B.1.2210.000071
S137N137IaATaTA12B.1.2210.000071
S137N137LAATTTA12B.1.2210.000071
S137N137KaaTaaG12B.1.2210.000071
S137N137KaaTaaA12B.1.2210.000071
S137N137IaAtaTt12B.1.2210.000071
S137N137XAaTTaA12B.1.2210.000071
S137N137KaaTaaG22B.1.2340.000264
S137N137NaaTaaC22B.1.2430.000139
S137N137NaaTaaC22B.1.360.000292
S137N137YAatTat22B.1.466.20.000782
S137N137delAAT---22B.1.5950.000522
S137N137IaAtaTt22B.1.617.20.000008
S137N137delAAT---22C.370.000232
S137N137del1aaTaa-22C.380.016129
S137N137delAAT---22P.10.000032
S137N137delAAT---22P.1.150.000465
S137N137YAatTat110.055556
S137N137KaaTaaA110.055556
S137N137XAaTTaA110.055556
S137N137del2aATa--11AC.10.037037
S137N137del1aaTaa-11AD.20.000219
S137N137RaATaGG11All0
S137N137MaATaTG11All0
S137N137FAAtTTt11All0
S137N137CAAtTGt11All0
S137N137DAatGat11AY.10.000396
S137N137KaaTaaA11AY.1020.000027
S137N137IaAtaTt11AY.1030.000006
S137N137SaAtaGt11AY.1030.000006
S137N137YAatTat11AY.1030.000006
S137N137delAAT---11AY.1030.000006
S137N137del1AAT-NN11AY.1030.000006
S137N137TaAtaCt11AY.1050.000643
S137N137NaaTaaC11AY.1050.000643
S137N137NaaTaaC11AY.1060.000335
S137N137delAAT---11AY.1070.000466
S137N137SaAtaGt11AY.1080.001103
S137N137NaaTaaC11AY.1090.00074
S137N137NaaTaaC11AY.1160.000287
S137N137KaaTaaA11AY.1180.000063
S137N137delAAT---11AY.1180.000063
S137N137NaaTaaC11AY.1180.000063
S137N137KaaTaaA11AY.1190.000035
S137N137IaAtaTt11AY.1190.000035
S137N137KaaTaaA11AY.1200.000037
S137N137YAatTat11AY.1200.000037
S137N137delAAT---11AY.1210.000135
S137N137KaaTaaA11AY.1210.000135
S137N137NaaTaaC11AY.140.000088
S137N137del1AaT-aA11AY.160.00038
S137N137delAAT---11AY.210.001898
S137N137NaaTaaC11AY.210.001898
S137N137DAatGat11AY.230.00007
S137N137YAatTat11AY.250.000006
S137N137SaAtaGt11AY.260.000028
S137N137SaAtaGt11AY.290.000016
S137N137TaAtaCt11AY.30.00001
S137N137KaaTaaA11AY.30.00001
S137N137KaaTaaA11AY.3.10.000085
S137N137KaaTaaA11AY.330.000067
S137N137YAatTat11AY.330.000067
S137N137delAAT---11AY.330.000067
S137N137SaAtaGt11AY.330.000067
S137N137NaaTaaC11AY.340.000097
S137N137DAatGat11AY.340.000097
S137N137delAAT---11AY.340.000097
S137N137del1Aat-at11AY.34.10.00051
S137N137NaaTaaC11AY.34.10.00051
S137N137delAAT---11AY.360.000148
S137N137delAAT---11AY.390.000025
S137N137del1Aat-at11AY.40.000002
S137N137HAatCat11AY.40.000002
S137N137del2aATa--11AY.40.000002
S137N137delAAT---11AY.4.10.000737
S137N137SaAtaGt11AY.4.20.000022
S137N137YAaTTaC11AY.4.2.10.000149
S137N137KaaTaaA11AY.400.000964
S137N137YAatTat11AY.420.00004
S137N137del1Aat-at11AY.430.000004
S137N137IaAtaTt11AY.430.000004
S137N137del2aATa--11AY.440.000006
S137N137DAatGat11AY.450.000122
S137N137KaaTaaG11AY.450.000122
S137N137NaaTaaC11AY.460.000104
S137N137YAatTat11AY.460.000104
S137N137KaaTaaA11AY.460.000104
S137N137delAAT---11AY.460.000104
S137N137TaAtaCt11AY.460.000104
S137N137SaAtaGt11AY.46.20.000635
S137N137delAAT---11AY.470.000031
S137N137delAAT---11AY.50.000021
S137N137SaAtaGt11AY.50.000021
S137N137KaaTaaA11AY.510.000909
S137N137NaaTaaC11AY.520.000814
S137N137del1Aat-at11AY.590.00053
S137N137NaaTaaC11AY.60.000041
S137N137DAatGat11AY.60.000041
S137N137delAAT---11AY.600.000938
S137N137delAAT---11AY.620.000436
S137N137delAAT---11AY.670.000464
S137N137IaAtaTt11AY.690.000187
S137N137SaAtaGt11AY.690.000187
S137N137NaaTaaC11AY.70.000196
S137N137delAAT---11AY.7.20.000559
S137N137NaaTaaC11AY.710.000475
S137N137delAAT---11AY.720.001361
S137N137KaaTaaG11AY.75.10.00018
S137N137SaAtaGt11AY.80.000606
S137N137delAAT---11AY.840.000437
S137N137del1AAt-Gt11AY.850.000427
S137N137delAAT---11AY.850.000427
S137N137SaAtaGt11AY.90.000068
S137N137del2AAt--t11AY.90.000068
S137N137KaaTaaG11AY.90.000068
S137N137SaAtaGt11AY.9.10.000084
S137N137DAatGat11AY.930.000273
S137N137NaaTaaC11AY.960.002075
S137N137KaaTaaA11AY.980.000079
S137N137KaaTaaA11AY.98.10.000048
S137N137delAAT---11AY.98.10.000048
S137N137delAAT---11AY.99.10.001553
S137N137delAAT---11AZ.50.003509
S137N137YAatTat11B0.000128
S137N137del1aaTaa-11B.10.000009
S137N137TaAtaCt11B.10.000009
S137N137KaaTaaA11B.10.000009
S137N137RaATaGG11B.10.000009
S137N137NaaTaaC11B.1.10.000018
S137N137NaaTaaC11B.1.1.1150.008929
S137N137NaaTaaC11B.1.1.2140.000055
S137N137SaAtaGt11B.1.1.2190.005
S137N137KaaTaaA11B.1.1.2310.003096
S137N137delAAT---11B.1.1.2360.006897
S137N137NaaTaaC11B.1.1.280.000311
S137N137KaaTaaG11B.1.1.280.000311
S137N137KaaTaaG11B.1.1.3060.000438
S137N137NaaTaaC11B.1.1.3060.000438
S137N137delAAT---11B.1.1.3060.000438
S137N137NaaTaaC11B.1.1.3150.008475
S137N137delAAT---11B.1.1.3180.000302
S137N137delAAT---11B.1.1.370.000193
S137N137NaaTaaC11B.1.1.410.006329
S137N137del2aATa--11B.1.1.70.000001
S137N137del1aaTaa-11B.1.1110.001175
S137N137KaaTaaA11B.1.1600.000031
S137N137delAAT---11B.1.1600.000031
S137N137delAAT---11B.1.160.230.004831
S137N137DAatGat11B.1.1770.000013
S137N137TaAtaCt11B.1.1770.000013
S137N137YAatTat11B.1.1770.000013
S137N137delAAT---11B.1.177.210.000076
S137N137delAAT---11B.1.177.40.000211
S137N137delAAT---11B.1.177.540.000606
S137N137NaaTaaC11B.1.177.570.000281
S137N137NaaTaaC11B.1.177.860.000183
S137N137KaaTaaA11B.1.20.000009
S137N137MaATaTG11B.1.2210.000071
S137N137delAAT---11B.1.2210.000071
S137N137YAatTat11B.1.2210.000071
S137N137FAAtTTt11B.1.2210.000071
S137N137SaAtaGt11B.1.2320.000537
S137N137delAAT---11B.1.2320.000537
S137N137delAAT---11B.1.2340.000132
S137N137SaAtaGt11B.1.2410.000812
S137N137SaAtaGt11B.1.2580.000067
S137N137DAatGat11B.1.3510.00003
S137N137NaaTaaC11B.1.36.290.000517
S137N137NaaTaaC11B.1.3750.00082
S137N137NaaTaaC11B.1.4270.00005
S137N137IaAtaTt11B.1.4290.000024
S137N137NaaTaaC11B.1.4560.003268
S137N137SaAtaGt11B.1.5260.000024
S137N137delAAT---11B.1.5850.027778
S137N137del1Aat-at11B.1.5960.000087
S137N137NaaTaaC11B.1.596.10.009346
S137N137NaaTaaC11B.1.6020.006536
S137N137DAatGat11B.1.6120.002653
S137N137delAAT---11B.1.6120.002653
S137N137GAAtGGt11B.1.617.10.000129
S137N137SaAtaGt11B.1.617.10.000129
S137N137GAAtGGt11B.1.617.20.000004
S137N137delAAT---11B.1.6200.000946
S137N137NaaTaaC11B.1.6200.000946
S137N137delAAT---11B.1.6210.000089
S137N137KaaTaaA11B.1.6250.002353
S137N137YAatTat11B.1.90.006173
S137N137KaaTaaA11B.60.00091
S137N137DAatGat11D.20.000075
S137N137DAatGat11P.10.000016
S137N137YAatTat11P.10.000016
S137N137del2aATa--11P.10.000016
S137N137del1aaTaa-11P.10.000016
S137N137CAAtTGt11P.10.000016
S137N137del2aATa--11P.1.120.000484
S137N137NaaTaaC11P.1.170.000162
S137N137delAAT---11P.30.001595
S137N137NaaTaaC11Q.40.000455
S137N137NaaTaaC11Q.80.000165
S137N137TaAtaCt11R.10.00009