CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 137 | N137N | syn | aaT | aaC | 3327 | 3327 | 1 | 21971-21973 | |
S | 137 | N137del | del | AAT | --- | 501 | 501 | 1 | 21971-21973 | |
S | 137 | N137S | nonsyn | aAt | aGt | 258 | 258 | 1 | 21971-21973 | |
S | 137 | N137K | nonsyn | aaT | aaA | 158 | 129 | 0.816456 | 21971-21973 | |
S | 137 | N137K | nonsyn | aaT | aaG | 158 | 29 | 0.183544 | 21971-21973 | |
S | 137 | N137T | nonsyn | aAt | aCt | 108 | 108 | 1 | 21971-21973 | |
S | 137 | N137D | nonsyn | Aat | Gat | 98 | 98 | 1 | 21971-21973 | |
S | 137 | N137Y | nonsyn | Aat | Tat | 29 | 28 | 0.965517 | 21971-21973 | |
S | 137 | N137Y | nonsyn | AaT | TaC | 29 | 1 | 0.0344828 | 21971-21973 | |
S | 137 | N137I | nonsyn | aAt | aTt | 23 | 22 | 0.956522 | 21971-21973 | |
S | 137 | N137del1 | del | aaT | aa- | 23 | 9 | 0.391304 | 21971-21973 | |
S | 137 | N137del1 | del | Aat | -at | 23 | 9 | 0.391304 | 21971-21973 | |
S | 137 | N137del1 | del | AAT | -NN | 23 | 3 | 0.130435 | 21971-21973 | |
S | 137 | N137I | nonsyn | aAT | aTA | 23 | 1 | 0.0434783 | 21971-21973 | |
S | 137 | N137del1 | del | AAt | -Gt | 23 | 1 | 0.0434783 | 21971-21973 | |
S | 137 | N137del1 | del | AaT | -aA | 23 | 1 | 0.0434783 | 21971-21973 | |
S | 137 | N137del2 | del | aAT | a-- | 16 | 12 | 0.75 | 21971-21973 | |
S | 137 | N137del2 | del | AAt | --t | 16 | 4 | 0.25 | 21971-21973 | |
S | 137 | N137H | nonsyn | Aat | Cat | 7 | 7 | 1 | 21971-21973 | |
S | 137 | N137X | nonsyn | AaT | TaA | 3 | 2 | 0.666667 | 21971-21973 | |
S | 137 | N137X | nonsyn | AaT | TaG | 3 | 1 | 0.333333 | 21971-21973 | |
S | 137 | N137G | nonsyn | AAt | GGt | 2 | 2 | 1 | 21971-21973 | |
S | 137 | N137L | nonsyn | AAT | TTG | 2 | 1 | 0.5 | 21971-21973 | |
S | 137 | N137L | nonsyn | AAT | TTA | 2 | 1 | 0.5 | 21971-21973 | |
S | 137 | N137F | nonsyn | AAt | TTt | 1 | 1 | 1 | 21971-21973 | |
S | 137 | N137C | nonsyn | AAt | TGt | 1 | 1 | 1 | 21971-21973 | |
S | 137 | N137R | nonsyn | aAT | aGG | 1 | 1 | 1 | 21971-21973 | |
S | 137 | N137M | nonsyn | aAT | aTG | 1 | 1 | 1 | 21971-21973 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 137 | N137N | aaT | aaC | 3327 | 3327 | All | 0.000636 |
S | 137 | N137N | aaT | aaC | 1758 | 1758 | B.1.617.2 | 0.00662 |
S | 137 | N137N | aaT | aaC | 585 | 585 | AY.4 | 0.000911 |
S | 137 | N137del | AAT | --- | 501 | 501 | All | 0.000096 |
S | 137 | N137S | aAt | aGt | 258 | 258 | All | 0.000049 |
S | 137 | N137N | aaT | aaC | 222 | 222 | AY.102 | 0.005886 |
S | 137 | N137del | AAT | --- | 160 | 160 | AT.1 | 0.820513 |
S | 137 | N137K | aaT | aaA | 129 | 158 | All | 0.000025 |
S | 137 | N137K | aaT | aaG | 29 | 158 | All | 0.000006 |
S | 137 | N137N | aaT | aaC | 117 | 117 | B.1.1.7 | 0.000105 |
S | 137 | N137T | aAt | aCt | 108 | 108 | All | 0.000021 |
S | 137 | N137D | Aat | Gat | 98 | 98 | All | 0.000019 |
S | 137 | N137K | aaT | aaA | 61 | 63 | B.1.1.7 | 0.000055 |
S | 137 | N137K | aaT | aaG | 2 | 63 | B.1.1.7 | 0.000002 |
S | 137 | N137S | aAt | aGt | 61 | 61 | AY.47 | 0.001897 |
S | 137 | N137N | aaT | aaC | 55 | 55 | B.1.234 | 0.007257 |
S | 137 | N137T | aAt | aCt | 55 | 55 | B.1.617.2 | 0.000207 |
S | 137 | N137D | Aat | Gat | 52 | 52 | AY.25 | 0.000313 |
S | 137 | N137N | aaT | aaC | 46 | 46 | Q.2 | 0.028221 |
S | 137 | N137N | aaT | aaC | 42 | 42 | AY.46.4 | 0.006909 |
S | 137 | N137del | AAT | --- | 41 | 41 | AY.43 | 0.000182 |
S | 137 | N137S | aAt | aGt | 40 | 40 | B.1.1.7 | 0.000036 |
S | 137 | N137N | aaT | aaC | 36 | 36 | AY.43 | 0.000159 |
S | 137 | N137N | aaT | aaC | 36 | 36 | AY.9.2 | 0.001322 |
S | 137 | N137N | aaT | aaC | 35 | 35 | AY.103 | 0.000217 |
S | 137 | N137del | AAT | --- | 35 | 35 | AY.4 | 0.000054 |
S | 137 | N137N | aaT | aaC | 34 | 34 | AY.117 | 0.002874 |
S | 137 | N137T | aAt | aCt | 32 | 32 | AY.43 | 0.000142 |
S | 137 | N137Y | Aat | Tat | 28 | 29 | All | 0.000005 |
S | 137 | N137Y | AaT | TaC | 1 | 29 | All | 0 |
S | 137 | N137S | aAt | aGt | 29 | 29 | AY.4 | 0.000045 |
S | 137 | N137S | aAt | aGt | 29 | 29 | B.1.620 | 0.027436 |
S | 137 | N137del | AAT | --- | 27 | 27 | B.1.1.7 | 0.000024 |
S | 137 | N137S | aAt | aGt | 24 | 24 | B.1.617.2 | 0.00009 |
S | 137 | N137I | aAt | aTt | 22 | 23 | All | 0.000004 |
S | 137 | N137del1 | aaT | aa- | 9 | 23 | All | 0.000002 |
S | 137 | N137del1 | Aat | -at | 9 | 23 | All | 0.000002 |
S | 137 | N137del1 | AAT | -NN | 3 | 23 | All | 0.000001 |
S | 137 | N137del1 | AaT | -aA | 1 | 23 | All | 0 |
S | 137 | N137I | aAT | aTA | 1 | 23 | All | 0 |
S | 137 | N137del1 | AAt | -Gt | 1 | 23 | All | 0 |
S | 137 | N137N | aaT | aaC | 23 | 23 | AY.39 | 0.000568 |
S | 137 | N137K | aaT | aaA | 22 | 22 | B.1.243 | 0.001531 |
S | 137 | N137N | aaT | aaC | 22 | 22 | B.1.258 | 0.001464 |
S | 137 | N137del | AAT | --- | 22 | 22 | B.1.429 | 0.000518 |
S | 137 | N137del | AAT | --- | 21 | 21 | B.1.576 | 0.019039 |
S | 137 | N137N | aaT | aaC | 18 | 18 | AY.55 | 0.016514 |
S | 137 | N137N | aaT | aaC | 17 | 17 | AY.75.1 | 0.003065 |
S | 137 | N137del2 | aAT | a-- | 12 | 16 | All | 0.000002 |
S | 137 | N137del2 | AAt | --t | 4 | 16 | All | 0.000001 |
S | 137 | N137del | AAT | --- | 16 | 16 | AY.4.2 | 0.000347 |
S | 137 | N137N | aaT | aaC | 16 | 16 | B.1.2 | 0.000141 |
S | 137 | N137K | aaT | aaA | 13 | 16 | B.1.617.2 | 0.000049 |
S | 137 | N137K | aaT | aaG | 3 | 16 | B.1.617.2 | 0.000011 |
S | 137 | N137N | aaT | aaC | 15 | 15 | AY.3 | 0.000149 |
S | 137 | N137del | AAT | --- | 14 | 14 | AY.25 | 0.000084 |
S | 137 | N137S | aAt | aGt | 14 | 14 | AY.3 | 0.000139 |
S | 137 | N137N | aaT | aaC | 13 | 13 | AY.42 | 0.000523 |
S | 137 | N137N | aaT | aaC | 13 | 13 | AY.44 | 0.000079 |
S | 137 | N137N | aaT | aaC | 13 | 13 | AY.98 | 0.001027 |
S | 137 | N137del | AAT | --- | 13 | 13 | B.1 | 0.000119 |
S | 137 | N137Y | Aat | Tat | 12 | 12 | B.1.1.7 | 0.000011 |
S | 137 | N137del | AAT | --- | 12 | 12 | B.1.617.2 | 0.000045 |
S | 137 | N137del | AAT | --- | 11 | 11 | AY.44 | 0.000067 |
S | 137 | N137N | aaT | aaC | 11 | 11 | AY.45 | 0.001339 |
S | 137 | N137S | aAt | aGt | 11 | 11 | B.1.177 | 0.000145 |
S | 137 | N137del | AAT | --- | 10 | 10 | AY.102 | 0.000265 |
S | 137 | N137N | aaT | aaC | 10 | 10 | AY.120 | 0.000372 |
S | 137 | N137N | aaT | aaC | 10 | 10 | AY.4.2 | 0.000217 |
S | 137 | N137N | aaT | aaC | 9 | 9 | AY.108 | 0.009923 |
S | 137 | N137S | aAt | aGt | 9 | 9 | AY.119 | 0.000318 |
S | 137 | N137N | aaT | aaC | 9 | 9 | AY.33 | 0.000601 |
S | 137 | N137del | AAT | --- | 9 | 9 | B.1.638 | 0.473684 |
S | 137 | N137D | Aat | Gat | 8 | 8 | AY.4 | 0.000012 |
S | 137 | N137H | Aat | Cat | 7 | 7 | All | 0.000001 |
S | 137 | N137del | AAT | --- | 7 | 7 | AY.34.1 | 0.00357 |
S | 137 | N137N | aaT | aaC | 7 | 7 | AY.5 | 0.000145 |
S | 137 | N137del | AAT | --- | 7 | 7 | AY.9 | 0.000473 |
S | 137 | N137K | aaT | aaG | 5 | 7 | B.1.429 | 0.000118 |
S | 137 | N137K | aaT | aaA | 2 | 7 | B.1.429 | 0.000047 |
S | 137 | N137T | aAt | aCt | 6 | 6 | AY.4 | 0.000009 |
S | 137 | N137del | AAT | --- | 6 | 6 | AY.42 | 0.000241 |
S | 137 | N137N | aaT | aaC | 6 | 6 | AY.98.1 | 0.000291 |
S | 137 | N137N | aaT | aaC | 6 | 6 | B.1.1.519 | 0.000238 |
S | 137 | N137H | Aat | Cat | 6 | 6 | B.1.1.7 | 0.000005 |
S | 137 | N137del | AAT | --- | 6 | 6 | B.1.177 | 0.000079 |
S | 137 | N137del2 | aAT | a-- | 6 | 6 | B.1.177 | 0.000079 |
S | 137 | N137D | Aat | Gat | 6 | 6 | B.1.2 | 0.000053 |
S | 137 | N137K | aaT | aaG | 4 | 6 | B.1.427 | 0.000202 |
S | 137 | N137K | aaT | aaA | 2 | 6 | B.1.427 | 0.000101 |
S | 137 | N137D | Aat | Gat | 6 | 6 | B.1.617.2 | 0.000023 |
S | 137 | N137S | aAt | aGt | 6 | 6 | P.1 | 0.000095 |
S | 137 | N137N | aaT | aaC | 5 | 5 | AY.26 | 0.000142 |
S | 137 | N137del | AAT | --- | 5 | 5 | AY.4.2.1 | 0.000745 |
S | 137 | N137K | aaT | aaA | 3 | 5 | AY.43 | 0.000013 |
S | 137 | N137K | aaT | aaG | 2 | 5 | AY.43 | 0.000009 |
S | 137 | N137N | aaT | aaC | 5 | 5 | AY.46.1 | 0.005133 |
S | 137 | N137N | aaT | aaC | 5 | 5 | AY.75 | 0.00028 |
S | 137 | N137N | aaT | aaC | 5 | 5 | B.1.621 | 0.000443 |
S | 137 | N137del | AAT | --- | 4 | 4 | 0.222222 | |
S | 137 | N137N | aaT | aaC | 4 | 4 | AY.110 | 0.000451 |
S | 137 | N137N | aaT | aaC | 4 | 4 | AY.20 | 0.000155 |
S | 137 | N137del | AAT | --- | 4 | 4 | AY.4.5 | 0.00043 |
S | 137 | N137N | aaT | aaC | 4 | 4 | AY.46.2 | 0.002541 |
S | 137 | N137N | aaT | aaC | 4 | 4 | B.1 | 0.000037 |
S | 137 | N137D | Aat | Gat | 4 | 4 | B.1.1.7 | 0.000004 |
S | 137 | N137N | aaT | aaC | 4 | 4 | B.1.160 | 0.000125 |
S | 137 | N137N | aaT | aaC | 4 | 4 | B.1.36.36 | 0.002408 |
S | 137 | N137N | aaT | aaC | 4 | 4 | B.1.466.2 | 0.001565 |
S | 137 | N137N | aaT | aaC | 4 | 4 | B.1.495 | 0.036364 |
S | 137 | N137N | aaT | aaC | 4 | 4 | B.1.526 | 0.000094 |
S | 137 | N137X | AaT | TaA | 2 | 3 | All | 0 |
S | 137 | N137X | AaT | TaG | 1 | 3 | All | 0 |
S | 137 | N137del | AAT | --- | 3 | 3 | AY.108 | 0.003308 |
S | 137 | N137del | AAT | --- | 3 | 3 | AY.119 | 0.000106 |
S | 137 | N137del | AAT | --- | 3 | 3 | AY.120 | 0.000112 |
S | 137 | N137N | aaT | aaC | 3 | 3 | AY.120.1 | 0.000963 |
S | 137 | N137N | aaT | aaC | 3 | 3 | AY.23 | 0.000209 |
S | 137 | N137N | aaT | aaC | 3 | 3 | AY.25 | 0.000018 |
S | 137 | N137del1 | aaT | aa- | 2 | 3 | AY.25 | 0.000012 |
S | 137 | N137del1 | AAT | -NN | 1 | 3 | AY.25 | 0.000006 |
S | 137 | N137N | aaT | aaC | 3 | 3 | AY.29 | 0.000047 |
S | 137 | N137S | aAt | aGt | 3 | 3 | AY.34 | 0.000291 |
S | 137 | N137del2 | AAt | --t | 3 | 3 | AY.34.1 | 0.00153 |
S | 137 | N137T | aAt | aCt | 3 | 3 | AY.44 | 0.000018 |
S | 137 | N137N | aaT | aaC | 3 | 3 | AY.46.6 | 0.000217 |
S | 137 | N137T | aAt | aCt | 3 | 3 | AY.47 | 0.000093 |
S | 137 | N137N | aaT | aaC | 3 | 3 | AY.5.3 | 0.001012 |
S | 137 | N137I | aAt | aTt | 3 | 3 | AY.7.1 | 0.000338 |
S | 137 | N137N | aaT | aaC | 3 | 3 | AY.77 | 0.003382 |
S | 137 | N137D | Aat | Gat | 3 | 3 | AY.99.2 | 0.000276 |
S | 137 | N137S | aAt | aGt | 3 | 3 | B.1 | 0.000027 |
S | 137 | N137I | aAt | aTt | 3 | 3 | B.1.1.47 | 0.016043 |
S | 137 | N137N | aaT | aaC | 3 | 3 | B.1.1.50 | 0.002037 |
S | 137 | N137S | aAt | aGt | 3 | 3 | B.1.1.519 | 0.000119 |
S | 137 | N137T | aAt | aCt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 137 | N137N | aaT | aaC | 3 | 3 | B.1.258.16 | 0.00491 |
S | 137 | N137N | aaT | aaC | 3 | 3 | B.3.1 | 0.004975 |
S | 137 | N137N | aaT | aaC | 3 | 3 | P.1 | 0.000047 |
S | 137 | N137N | aaT | aaC | 2 | 2 | A | 0.000774 |
S | 137 | N137G | AAt | GGt | 2 | 2 | All | 0 |
S | 137 | N137L | AAT | TTG | 1 | 2 | All | 0 |
S | 137 | N137L | AAT | TTA | 1 | 2 | All | 0 |
S | 137 | N137D | Aat | Gat | 2 | 2 | AY.118 | 0.000125 |
S | 137 | N137del1 | aaT | aa- | 1 | 2 | AY.120 | 0.000037 |
S | 137 | N137del1 | Aat | -at | 1 | 2 | AY.120 | 0.000037 |
S | 137 | N137K | aaT | aaA | 1 | 2 | AY.25 | 0.000006 |
S | 137 | N137K | aaT | aaG | 1 | 2 | AY.25 | 0.000006 |
S | 137 | N137del | AAT | --- | 2 | 2 | AY.3 | 0.00002 |
S | 137 | N137I | aAt | aTt | 2 | 2 | AY.4 | 0.000003 |
S | 137 | N137K | aaT | aaA | 2 | 2 | AY.4 | 0.000003 |
S | 137 | N137D | Aat | Gat | 2 | 2 | AY.4.2 | 0.000043 |
S | 137 | N137K | aaT | aaG | 1 | 2 | AY.42 | 0.00004 |
S | 137 | N137K | aaT | aaA | 1 | 2 | AY.42 | 0.00004 |
S | 137 | N137S | aAt | aGt | 2 | 2 | AY.43 | 0.000009 |
S | 137 | N137Y | Aat | Tat | 2 | 2 | AY.43 | 0.000009 |
S | 137 | N137D | Aat | Gat | 2 | 2 | AY.43 | 0.000009 |
S | 137 | N137I | aAt | aTt | 2 | 2 | AY.44 | 0.000012 |
S | 137 | N137N | aaT | aaC | 2 | 2 | AY.47 | 0.000062 |
S | 137 | N137K | aaT | aaG | 2 | 2 | AY.5.4 | 0.000553 |
S | 137 | N137del | AAT | --- | 2 | 2 | AY.65 | 0.001066 |
S | 137 | N137del | AAT | --- | 2 | 2 | AY.75 | 0.000112 |
S | 137 | N137N | aaT | aaC | 2 | 2 | AY.84 | 0.000875 |
S | 137 | N137I | aAt | aTt | 2 | 2 | AY.85 | 0.000854 |
S | 137 | N137N | aaT | aaC | 2 | 2 | AY.85 | 0.000854 |
S | 137 | N137N | aaT | aaC | 2 | 2 | AY.86 | 0.00166 |
S | 137 | N137N | aaT | aaC | 2 | 2 | AY.95 | 0.001522 |
S | 137 | N137del | AAT | --- | 2 | 2 | AY.99 | 0.002099 |
S | 137 | N137S | aAt | aGt | 2 | 2 | B.1.1 | 0.000036 |
S | 137 | N137del | AAT | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 137 | N137K | aaT | aaG | 1 | 2 | B.1.1 | 0.000018 |
S | 137 | N137K | aaT | aaA | 1 | 2 | B.1.1 | 0.000018 |
S | 137 | N137del | AAT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
S | 137 | N137S | aAt | aGt | 2 | 2 | B.1.1.326 | 0.003521 |
S | 137 | N137N | aaT | aaC | 2 | 2 | B.1.1.521 | 0.010695 |
S | 137 | N137I | aAt | aTt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 137 | N137del1 | AAT | -NN | 1 | 2 | B.1.1.7 | 0.000001 |
S | 137 | N137del1 | Aat | -at | 1 | 2 | B.1.1.7 | 0.000001 |
S | 137 | N137N | aaT | aaC | 2 | 2 | B.1.177 | 0.000026 |
S | 137 | N137S | aAt | aGt | 2 | 2 | B.1.177.12 | 0.000303 |
S | 137 | N137del | AAT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 137 | N137del1 | Aat | -at | 2 | 2 | B.1.2 | 0.000018 |
S | 137 | N137D | Aat | Gat | 2 | 2 | B.1.221 | 0.000142 |
S | 137 | N137X | AaT | TaG | 1 | 2 | B.1.221 | 0.000071 |
S | 137 | N137L | AAT | TTG | 1 | 2 | B.1.221 | 0.000071 |
S | 137 | N137I | aAT | aTA | 1 | 2 | B.1.221 | 0.000071 |
S | 137 | N137L | AAT | TTA | 1 | 2 | B.1.221 | 0.000071 |
S | 137 | N137K | aaT | aaG | 1 | 2 | B.1.221 | 0.000071 |
S | 137 | N137K | aaT | aaA | 1 | 2 | B.1.221 | 0.000071 |
S | 137 | N137I | aAt | aTt | 1 | 2 | B.1.221 | 0.000071 |
S | 137 | N137X | AaT | TaA | 1 | 2 | B.1.221 | 0.000071 |
S | 137 | N137K | aaT | aaG | 2 | 2 | B.1.234 | 0.000264 |
S | 137 | N137N | aaT | aaC | 2 | 2 | B.1.243 | 0.000139 |
S | 137 | N137N | aaT | aaC | 2 | 2 | B.1.36 | 0.000292 |
S | 137 | N137Y | Aat | Tat | 2 | 2 | B.1.466.2 | 0.000782 |
S | 137 | N137del | AAT | --- | 2 | 2 | B.1.595 | 0.000522 |
S | 137 | N137I | aAt | aTt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 137 | N137del | AAT | --- | 2 | 2 | C.37 | 0.000232 |
S | 137 | N137del1 | aaT | aa- | 2 | 2 | C.38 | 0.016129 |
S | 137 | N137del | AAT | --- | 2 | 2 | P.1 | 0.000032 |
S | 137 | N137del | AAT | --- | 2 | 2 | P.1.15 | 0.000465 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | 0.055556 | |
S | 137 | N137K | aaT | aaA | 1 | 1 | 0.055556 | |
S | 137 | N137X | AaT | TaA | 1 | 1 | 0.055556 | |
S | 137 | N137del2 | aAT | a-- | 1 | 1 | AC.1 | 0.037037 |
S | 137 | N137del1 | aaT | aa- | 1 | 1 | AD.2 | 0.000219 |
S | 137 | N137R | aAT | aGG | 1 | 1 | All | 0 |
S | 137 | N137M | aAT | aTG | 1 | 1 | All | 0 |
S | 137 | N137F | AAt | TTt | 1 | 1 | All | 0 |
S | 137 | N137C | AAt | TGt | 1 | 1 | All | 0 |
S | 137 | N137D | Aat | Gat | 1 | 1 | AY.1 | 0.000396 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.102 | 0.000027 |
S | 137 | N137I | aAt | aTt | 1 | 1 | AY.103 | 0.000006 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.103 | 0.000006 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | AY.103 | 0.000006 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.103 | 0.000006 |
S | 137 | N137del1 | AAT | -NN | 1 | 1 | AY.103 | 0.000006 |
S | 137 | N137T | aAt | aCt | 1 | 1 | AY.105 | 0.000643 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.105 | 0.000643 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.106 | 0.000335 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.107 | 0.000466 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.108 | 0.001103 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.109 | 0.00074 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.116 | 0.000287 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.118 | 0.000063 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.118 | 0.000063 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.118 | 0.000063 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.119 | 0.000035 |
S | 137 | N137I | aAt | aTt | 1 | 1 | AY.119 | 0.000035 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.120 | 0.000037 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | AY.120 | 0.000037 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.121 | 0.000135 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.121 | 0.000135 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.14 | 0.000088 |
S | 137 | N137del1 | AaT | -aA | 1 | 1 | AY.16 | 0.00038 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.21 | 0.001898 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.21 | 0.001898 |
S | 137 | N137D | Aat | Gat | 1 | 1 | AY.23 | 0.00007 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | AY.25 | 0.000006 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.26 | 0.000028 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.29 | 0.000016 |
S | 137 | N137T | aAt | aCt | 1 | 1 | AY.3 | 0.00001 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.3 | 0.00001 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.3.1 | 0.000085 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.33 | 0.000067 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | AY.33 | 0.000067 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.33 | 0.000067 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.33 | 0.000067 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.34 | 0.000097 |
S | 137 | N137D | Aat | Gat | 1 | 1 | AY.34 | 0.000097 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.34 | 0.000097 |
S | 137 | N137del1 | Aat | -at | 1 | 1 | AY.34.1 | 0.00051 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.34.1 | 0.00051 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.36 | 0.000148 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.39 | 0.000025 |
S | 137 | N137del1 | Aat | -at | 1 | 1 | AY.4 | 0.000002 |
S | 137 | N137H | Aat | Cat | 1 | 1 | AY.4 | 0.000002 |
S | 137 | N137del2 | aAT | a-- | 1 | 1 | AY.4 | 0.000002 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.4.1 | 0.000737 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.4.2 | 0.000022 |
S | 137 | N137Y | AaT | TaC | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.40 | 0.000964 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | AY.42 | 0.00004 |
S | 137 | N137del1 | Aat | -at | 1 | 1 | AY.43 | 0.000004 |
S | 137 | N137I | aAt | aTt | 1 | 1 | AY.43 | 0.000004 |
S | 137 | N137del2 | aAT | a-- | 1 | 1 | AY.44 | 0.000006 |
S | 137 | N137D | Aat | Gat | 1 | 1 | AY.45 | 0.000122 |
S | 137 | N137K | aaT | aaG | 1 | 1 | AY.45 | 0.000122 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.46 | 0.000104 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | AY.46 | 0.000104 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.46 | 0.000104 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.46 | 0.000104 |
S | 137 | N137T | aAt | aCt | 1 | 1 | AY.46 | 0.000104 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.46.2 | 0.000635 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.47 | 0.000031 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.5 | 0.000021 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.5 | 0.000021 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.51 | 0.000909 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.52 | 0.000814 |
S | 137 | N137del1 | Aat | -at | 1 | 1 | AY.59 | 0.00053 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.6 | 0.000041 |
S | 137 | N137D | Aat | Gat | 1 | 1 | AY.6 | 0.000041 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.62 | 0.000436 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 137 | N137I | aAt | aTt | 1 | 1 | AY.69 | 0.000187 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.69 | 0.000187 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.7 | 0.000196 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.7.2 | 0.000559 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.71 | 0.000475 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 137 | N137K | aaT | aaG | 1 | 1 | AY.75.1 | 0.00018 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.8 | 0.000606 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 137 | N137del1 | AAt | -Gt | 1 | 1 | AY.85 | 0.000427 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.85 | 0.000427 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.9 | 0.000068 |
S | 137 | N137del2 | AAt | --t | 1 | 1 | AY.9 | 0.000068 |
S | 137 | N137K | aaT | aaG | 1 | 1 | AY.9 | 0.000068 |
S | 137 | N137S | aAt | aGt | 1 | 1 | AY.9.1 | 0.000084 |
S | 137 | N137D | Aat | Gat | 1 | 1 | AY.93 | 0.000273 |
S | 137 | N137N | aaT | aaC | 1 | 1 | AY.96 | 0.002075 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.98 | 0.000079 |
S | 137 | N137K | aaT | aaA | 1 | 1 | AY.98.1 | 0.000048 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 137 | N137del | AAT | --- | 1 | 1 | AY.99.1 | 0.001553 |
S | 137 | N137del | AAT | --- | 1 | 1 | AZ.5 | 0.003509 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | B | 0.000128 |
S | 137 | N137del1 | aaT | aa- | 1 | 1 | B.1 | 0.000009 |
S | 137 | N137T | aAt | aCt | 1 | 1 | B.1 | 0.000009 |
S | 137 | N137K | aaT | aaA | 1 | 1 | B.1 | 0.000009 |
S | 137 | N137R | aAT | aGG | 1 | 1 | B.1 | 0.000009 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.1 | 0.000018 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.1.115 | 0.008929 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.1.214 | 0.000055 |
S | 137 | N137S | aAt | aGt | 1 | 1 | B.1.1.219 | 0.005 |
S | 137 | N137K | aaT | aaA | 1 | 1 | B.1.1.231 | 0.003096 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.1.28 | 0.000311 |
S | 137 | N137K | aaT | aaG | 1 | 1 | B.1.1.28 | 0.000311 |
S | 137 | N137K | aaT | aaG | 1 | 1 | B.1.1.306 | 0.000438 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.1.306 | 0.000438 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.1.315 | 0.008475 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.1.41 | 0.006329 |
S | 137 | N137del2 | aAT | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 137 | N137del1 | aaT | aa- | 1 | 1 | B.1.111 | 0.001175 |
S | 137 | N137K | aaT | aaA | 1 | 1 | B.1.160 | 0.000031 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 137 | N137D | Aat | Gat | 1 | 1 | B.1.177 | 0.000013 |
S | 137 | N137T | aAt | aCt | 1 | 1 | B.1.177 | 0.000013 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | B.1.177 | 0.000013 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.177.57 | 0.000281 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.177.86 | 0.000183 |
S | 137 | N137K | aaT | aaA | 1 | 1 | B.1.2 | 0.000009 |
S | 137 | N137M | aAT | aTG | 1 | 1 | B.1.221 | 0.000071 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | B.1.221 | 0.000071 |
S | 137 | N137F | AAt | TTt | 1 | 1 | B.1.221 | 0.000071 |
S | 137 | N137S | aAt | aGt | 1 | 1 | B.1.232 | 0.000537 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.232 | 0.000537 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.234 | 0.000132 |
S | 137 | N137S | aAt | aGt | 1 | 1 | B.1.241 | 0.000812 |
S | 137 | N137S | aAt | aGt | 1 | 1 | B.1.258 | 0.000067 |
S | 137 | N137D | Aat | Gat | 1 | 1 | B.1.351 | 0.00003 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.36.29 | 0.000517 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.375 | 0.00082 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.427 | 0.00005 |
S | 137 | N137I | aAt | aTt | 1 | 1 | B.1.429 | 0.000024 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.456 | 0.003268 |
S | 137 | N137S | aAt | aGt | 1 | 1 | B.1.526 | 0.000024 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.585 | 0.027778 |
S | 137 | N137del1 | Aat | -at | 1 | 1 | B.1.596 | 0.000087 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.596.1 | 0.009346 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.602 | 0.006536 |
S | 137 | N137D | Aat | Gat | 1 | 1 | B.1.612 | 0.002653 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.612 | 0.002653 |
S | 137 | N137G | AAt | GGt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 137 | N137S | aAt | aGt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 137 | N137G | AAt | GGt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 137 | N137N | aaT | aaC | 1 | 1 | B.1.620 | 0.000946 |
S | 137 | N137del | AAT | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 137 | N137K | aaT | aaA | 1 | 1 | B.1.625 | 0.002353 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | B.1.9 | 0.006173 |
S | 137 | N137K | aaT | aaA | 1 | 1 | B.6 | 0.00091 |
S | 137 | N137D | Aat | Gat | 1 | 1 | D.2 | 0.000075 |
S | 137 | N137D | Aat | Gat | 1 | 1 | P.1 | 0.000016 |
S | 137 | N137Y | Aat | Tat | 1 | 1 | P.1 | 0.000016 |
S | 137 | N137del2 | aAT | a-- | 1 | 1 | P.1 | 0.000016 |
S | 137 | N137del1 | aaT | aa- | 1 | 1 | P.1 | 0.000016 |
S | 137 | N137C | AAt | TGt | 1 | 1 | P.1 | 0.000016 |
S | 137 | N137del2 | aAT | a-- | 1 | 1 | P.1.12 | 0.000484 |
S | 137 | N137N | aaT | aaC | 1 | 1 | P.1.17 | 0.000162 |
S | 137 | N137del | AAT | --- | 1 | 1 | P.3 | 0.001595 |
S | 137 | N137N | aaT | aaC | 1 | 1 | Q.4 | 0.000455 |
S | 137 | N137N | aaT | aaC | 1 | 1 | Q.8 | 0.000165 |
S | 137 | N137T | aAt | aCt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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