CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 136

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S136C136FnonsyntGttTt727727121968-21970
S136C136deldelTGT---471471121968-21970
S136C136GnonsynTgtGgt1351340.99259321968-21970
S136C136GnonsynTgTGgG13510.0074074121968-21970
S136C136CsyntgTtgC8484121968-21970
S136C136RnonsynTgtCgt39370.94871821968-21970
S136C136RnonsynTgTCgG3910.02564121968-21970
S136C136RnonsynTgTCgC3910.02564121968-21970
S136C136YnonsyntGttAt2727121968-21970
S136C136SnonsynTgtAgt18100.55555621968-21970
S136C136SnonsyntGttCt1880.44444421968-21970
S136C136del1deltgTtg-1150.45454521968-21970
S136C136del1delTgt-gt1130.27272721968-21970
S136C136del1deltGtt-t1110.090909121968-21970
S136C136del1delTGT-NN1110.090909121968-21970
S136C136del1delTGt-At1110.090909121968-21970
S136C136XnonsyntgTtgA88121968-21970
S136C136WnonsyntgTtgG66121968-21970
S136C136LnonsyntGTtTA210.521968-21970
S136C136LnonsyntGTtTG210.521968-21970
S136C136PnonsynTGtCCt11121968-21970
S136C136del2deltGTt--11121968-21970
S136C136HnonsynTGtCAt11121968-21970

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S136C136FtGttTt727727All0.000139
S136C136delTGT---471471All0.00009
S136C136FtGttTt217217C.1.20.923404
S136C136FtGttTt181181B.1.6300.947644
S136C136delTGT---159159AT.10.815385
S136C136GTgtGgt134135All0.000026
S136C136GTgTGgG1135All0
S136C136CtgTtgC8484All0.000016
S136C136GTgtGgt6565B.1.4290.001529
S136C136delTGT---4242AY.430.000186
S136C136RTgtCgt3739All0.000007
S136C136RTgTCgG139All0
S136C136RTgTCgC139All0
S136C136delTGT---3535AY.40.000054
S136C136FtGttTt3333AY.450.004016
S136C136CtgTtgC3131AY.440.000189
S136C136FtGttTt3131C.36.3.10.084239
S136C136FtGttTt2828B.1.1.70.000025
S136C136YtGttAt2727All0.000005
S136C136delTGT---2525B.1.1.70.000022
S136C136FtGttTt2323B.1.214.20.013789
S136C136FtGttTt2222B.1.1.5240.458333
S136C136delTGT---2121B.1.5760.019039
S136C136STgtAgt1018All0.000002
S136C136StGttCt818All0.000002
S136C136FtGttTt1818AY.40.000028
S136C136FtGttTt1818B.1.6370.001315
S136C136FtGttTt1717B.10.000156
S136C136delTGT---1616AY.4.20.000347
S136C136delTGT---1515AY.250.00009
S136C136FtGttTt1515B.1.617.20.000056
S136C136FtGttTt1414B.1.10.000254
S136C136delTGT---1212AY.34.10.006119
S136C136del1tgTtg-511All0.000001
S136C136del1Tgt-gt311All0.000001
S136C136del1TGT-NN111All0
S136C136del1TGt-At111All0
S136C136del1tGtt-t111All0
S136C136delTGT---1111B.10.000101
S136C136RTgtCgt1111B.1.20.000097
S136C136delTGT---1111B.1.617.20.000041
S136C136delTGT---1010AY.1020.000265
S136C136delTGT---1010AY.440.000061
S136C136GTgtGgt99AY.430.00004
S136C136CtgTtgC99AY.460.000937
S136C136YtGttAt99B.1.6380.473684
S136C136XtgTtgA88All0.000002
S136C136FtGttTt88AY.1030.00005
S136C136delTGT---88AY.90.000541
S136C136GTgtGgt88B.10.000073
S136C136GTgtGgt88B.1.4270.000404
S136C136WtgTtgG66All0.000001
S136C136delTGT---66AY.420.000241
S136C136GTgtGgt66B.1.10.000109
S136C136delTGT---66B.1.1770.000079
S136C136CtgTtgC66B.1.1770.000079
S136C136FtGttTt66B.1.5250.000679
S136C136GTgtGgt45AY.330.000267
S136C136GTgTGgG15AY.330.000067
S136C136StGttCt45AY.40.000006
S136C136STgtAgt15AY.40.000002
S136C136delTGT---55AY.4.2.10.000745
S136C136FtGttTt55AY.430.000022
S136C136FtGttTt55P.30.007974
S136C136delTGT---440.222222
S136C136delTGT---44AY.1200.000149
S136C136FtGttTt44AY.380.001997
S136C136CtgTtgC44AY.40.000006
S136C136FtGttTt44AY.75.10.000721
S136C136RTgtCgt44B.1.1.70.000004
S136C136CtgTtgC44B.1.20.000035
S136C136GTgtGgt44R.10.00036
S136C136delTGT---33AY.1080.003308
S136C136YtGttAt33AY.40.000005
S136C136RTgtCgt33AY.40.000005
S136C136delTGT---33AY.4.50.000322
S136C136STgtAgt33AY.430.000013
S136C136RTgtCgt23AY.440.000012
S136C136RTgTCgC13AY.440.000006
S136C136FtGttTt33AY.750.000168
S136C136RTgtCgt33B.10.000027
S136C136FtGttTt33B.1.20.000026
S136C136delTGT---33B.1.20.000026
S136C136GTgtGgt33B.1.20.000026
S136C136GTgtGgt33B.1.5960.000261
S136C136FtGttTt220.111111
S136C136LtGTtTG12All0
S136C136LtGTtTA12All0
S136C136FtGttTt22AY.1020.000053
S136C136GTgtGgt22AY.1020.000053
S136C136delTGT---22AY.1030.000012
S136C136FtGttTt22AY.1160.000574
S136C136delTGT---22AY.1190.000071
S136C136GTgtGgt22AY.210.003795
S136C136FtGttTt22AY.230.000139
S136C136FtGttTt22AY.250.000012
S136C136delTGT---22AY.30.00002
S136C136FtGttTt22AY.390.000049
S136C136GTgtGgt22AY.39.20.003082
S136C136XtgTtgA22AY.40.000003
S136C136CtgTtgC22AY.4.20.000043
S136C136YtGttAt22AY.430.000009
S136C136del1Tgt-gt12AY.430.000004
S136C136del1TGT-NN12AY.430.000004
S136C136FtGttTt22AY.440.000012
S136C136STgtAgt22AY.50.000041
S136C136FtGttTt22AY.530.000575
S136C136GTgtGgt22AY.60.000082
S136C136delTGT---22AY.650.001066
S136C136FtGttTt22AY.680.000547
S136C136FtGttTt22AY.690.000373
S136C136delTGT---22AY.850.000854
S136C136delTGT---22AY.990.002099
S136C136YtGttAt22B.10.000018
S136C136delTGT---22B.1.10.000036
S136C136delTGT---22B.1.1.3110.000716
S136C136FtGttTt22B.1.1.4020.022222
S136C136CtgTtgC22B.1.1.70.000002
S136C136YtGttAt22B.1.1.70.000002
S136C136StGttCt12B.1.1.70.000001
S136C136STgtAgt12B.1.1.70.000001
S136C136FtGttTt22B.1.2430.000139
S136C136CtgTtgC22B.1.3510.000059
S136C136delTGT---22B.1.4290.000047
S136C136RTgtCgt22B.1.4290.000047
S136C136FtGttTt22B.1.4560.006536
S136C136FtGttTt22B.1.5870.003795
S136C136delTGT---22B.1.5950.000522
S136C136CtgTtgC22B.1.617.20.000008
S136C136delTGT---22C.370.000232
S136C136FtGttTt22P.10.000032
S136C136CtgTtgC22P.1.140.000096
S136C136delTGT---22P.1.150.000465
S136C136YtGttAt110.055556
S136C136PTGtCCt11All0
S136C136del2tGTt--11All0
S136C136HTGtCAt11All0
S136C136del2tGTt--11AT.10.005128
S136C136RTgtCgt11AY.1000.000046
S136C136RTgtCgt11AY.1020.000027
S136C136CtgTtgC11AY.1020.000027
S136C136CtgTtgC11AY.1030.000006
S136C136GTgtGgt11AY.1030.000006
S136C136YtGttAt11AY.1030.000006
S136C136delTGT---11AY.1070.000466
S136C136RTgtCgt11AY.1070.000466
S136C136RTgtCgt11AY.1130.000142
S136C136RTgtCgt11AY.1140.000231
S136C136FtGttTt11AY.1170.000085
S136C136delTGT---11AY.1180.000063
S136C136FtGttTt11AY.1190.000035
S136C136GTgtGgt11AY.1200.000037
S136C136FtGttTt11AY.1200.000037
S136C136del1tgTtg-11AY.1210.000135
S136C136del1tgTtg-11AY.160.00038
S136C136FtGttTt11AY.190.00114
S136C136FtGttTt11AY.200.000039
S136C136delTGT---11AY.210.001898
S136C136CtgTtgC11AY.230.00007
S136C136GTgtGgt11AY.230.00007
S136C136YtGttAt11AY.230.00007
S136C136CtgTtgC11AY.23.10.000417
S136C136FtGttTt11AY.30.00001
S136C136del1TGt-At11AY.30.00001
S136C136FtGttTt11AY.3.10.000085
S136C136FtGttTt11AY.320.000532
S136C136GTgtGgt11AY.320.000532
S136C136delTGT---11AY.330.000067
S136C136delTGT---11AY.340.000097
S136C136FtGttTt11AY.34.10.00051
S136C136delTGT---11AY.360.000148
S136C136delTGT---11AY.390.000025
S136C136WtgTtgG11AY.390.000025
S136C136StGttCt11AY.39.10.00004
S136C136delTGT---11AY.39.10.00004
S136C136GTgtGgt11AY.39.10.00004
S136C136GTgtGgt11AY.40.000002
S136C136WtgTtgG11AY.40.000002
S136C136del1tgTtg-11AY.4.10.000737
S136C136RTgTCgG11AY.4.2.10.000149
S136C136CtgTtgC11AY.4.50.000107
S136C136CtgTtgC11AY.420.00004
S136C136GTgtGgt11AY.420.00004
S136C136WtgTtgG11AY.430.000004
S136C136CtgTtgC11AY.430.000004
S136C136RTgtCgt11AY.430.000004
S136C136YtGttAt11AY.440.000006
S136C136GTgtGgt11AY.440.000006
S136C136del1Tgt-gt11AY.440.000006
S136C136STgtAgt11AY.460.000104
S136C136delTGT---11AY.460.000104
S136C136GTgtGgt11AY.460.000104
S136C136FtGttTt11AY.46.10.001027
S136C136YtGttAt11AY.46.30.000934
S136C136RTgtCgt11AY.46.60.000072
S136C136FtGttTt11AY.46.60.000072
S136C136CtgTtgC11AY.46.60.000072
S136C136delTGT---11AY.470.000031
S136C136delTGT---11AY.50.000021
S136C136delTGT---11AY.540.000095
S136C136delTGT---11AY.590.00053
S136C136FtGttTt11AY.60.000041
S136C136delTGT---11AY.600.000938
S136C136delTGT---11AY.620.000436
S136C136delTGT---11AY.670.000464
S136C136del1tGtt-t11AY.670.000464
S136C136RTgtCgt11AY.690.000187
S136C136FtGttTt11AY.7.10.000113
S136C136delTGT---11AY.7.20.000559
S136C136FtGttTt11AY.700.000209
S136C136delTGT---11AY.720.001361
S136C136PTGtCCt11AY.750.000056
S136C136delTGT---11AY.750.000056
S136C136delTGT---11AY.840.000437
S136C136WtgTtgG11AY.840.000437
S136C136FtGttTt11AY.910.00073
S136C136STgtAgt11AY.98.10.000048
S136C136delTGT---11AY.98.10.000048
S136C136delTGT---11AY.99.10.001553
S136C136delTGT---11AZ.50.003509
S136C136XtgTtgA11B.10.000009
S136C136LtGTtTA11B.1.10.000018
S136C136XtgTtgA11B.1.10.000018
S136C136FtGttTt11B.1.1.10.000327
S136C136FtGttTt11B.1.1.1890.001513
S136C136RTgtCgt11B.1.1.2160.00089
S136C136delTGT---11B.1.1.2360.006897
S136C136RTgtCgt11B.1.1.2440.015385
S136C136delTGT---11B.1.1.3060.000438
S136C136delTGT---11B.1.1.3180.000302
S136C136delTGT---11B.1.1.370.000193
S136C136FtGttTt11B.1.1.3720.000689
S136C136CtgTtgC11B.1.1.4650.015625
S136C136CtgTtgC11B.1.1.5190.00004
S136C136GTgtGgt11B.1.1.70.000001
S136C136del1Tgt-gt11B.1.1.70.000001
S136C136FtGttTt11B.1.1280.000635
S136C136FtGttTt11B.1.1600.000031
S136C136delTGT---11B.1.1600.000031
S136C136GTgtGgt11B.1.1600.000031
S136C136delTGT---11B.1.160.230.004831
S136C136FtGttTt11B.1.1770.000013
S136C136delTGT---11B.1.177.100.000878
S136C136delTGT---11B.1.177.210.000076
S136C136delTGT---11B.1.177.40.000211
S136C136delTGT---11B.1.177.540.000606
S136C136FtGttTt11B.1.177.560.000668
S136C136CtgTtgC11B.1.177.690.001484
S136C136GTgtGgt11B.1.177.730.000566
S136C136XtgTtgA11B.1.20.000009
S136C136delTGT---11B.1.2210.000071
S136C136StGttCt11B.1.2210.000071
S136C136FtGttTt11B.1.2210.000071
S136C136del1tgTtg-11B.1.2320.000537
S136C136delTGT---11B.1.2340.000132
S136C136FtGttTt11B.1.2410.000812
S136C136YtGttAt11B.1.2430.00007
S136C136FtGttTt11B.1.258.110.000396
S136C136FtGttTt11B.1.258.170.000104
S136C136FtGttTt11B.1.3430.020833
S136C136CtgTtgC11B.1.3490.000715
S136C136FtGttTt11B.1.3510.00003
S136C136CtgTtgC11B.1.36.190.009259
S136C136FtGttTt11B.1.3690.000285
S136C136GTgtGgt11B.1.3750.00082
S136C136FtGttTt11B.1.4270.00005
S136C136RTgtCgt11B.1.438.10.000107
S136C136FtGttTt11B.1.438.10.000107
S136C136XtgTtgA11B.1.5030.002488
S136C136CtgTtgC11B.1.5250.000113
S136C136YtGttAt11B.1.5260.000024
S136C136FtGttTt11B.1.5260.000024
S136C136CtgTtgC11B.1.5670.003333
S136C136FtGttTt11B.1.5760.000907
S136C136CtgTtgC11B.1.5770.000687
S136C136delTGT---11B.1.5850.027778
S136C136GTgtGgt11B.1.5950.000261
S136C136CtgTtgC11B.1.5960.000087
S136C136FtGttTt11B.1.5970.00463
S136C136GTgtGgt11B.1.5990.00365
S136C136HTGtCAt11B.1.617.10.000129
S136C136FtGttTt11B.1.617.10.000129
S136C136StGttCt11B.1.617.20.000004
S136C136del1tgTtg-11B.1.617.20.000004
S136C136XtgTtgA11B.1.617.20.000004
S136C136YtGttAt11B.1.617.20.000004
S136C136WtgTtgG11B.1.617.20.000004
S136C136delTGT---11B.1.6200.000946
S136C136delTGT---11B.1.6210.000089
S136C136GTgtGgt11B.1.6210.000089
S136C136FtGttTt11B.1.6230.000536
S136C136CtgTtgC11B.1.6300.005236
S136C136XtgTtgA11B.1.6370.000073
S136C136LtGTtTG11B.1.90.006173
S136C136WtgTtgG11B.1.90.006173
S136C136FtGttTt11B.1.90.006173
S136C136FtGttTt11C.10.002392
S136C136FtGttTt11C.350.000774
S136C136FtGttTt11C.370.000116
S136C136CtgTtgC11C.370.000116
S136C136RTgtCgt11D.20.000075
S136C136FtGttTt11D.20.000075
S136C136CtgTtgC11L.30.003546
S136C136YtGttAt11P.30.001595
S136C136FtGttTt11Q.10.000126
S136C136STgtAgt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.