CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 136

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S136C136FnonsyntGttTt727727121968-21970
S136C136deldelTGT---471471121968-21970
S136C136GnonsynTgtGgt1351340.99259321968-21970
S136C136GnonsynTgTGgG13510.0074074121968-21970
S136C136CsyntgTtgC8484121968-21970
S136C136RnonsynTgtCgt39370.94871821968-21970
S136C136RnonsynTgTCgG3910.02564121968-21970
S136C136RnonsynTgTCgC3910.02564121968-21970
S136C136YnonsyntGttAt2727121968-21970
S136C136SnonsynTgtAgt18100.55555621968-21970
S136C136SnonsyntGttCt1880.44444421968-21970
S136C136del1deltgTtg-1150.45454521968-21970
S136C136del1delTgt-gt1130.27272721968-21970
S136C136del1deltGtt-t1110.090909121968-21970
S136C136del1delTGT-NN1110.090909121968-21970
S136C136del1delTGt-At1110.090909121968-21970
S136C136XnonsyntgTtgA88121968-21970
S136C136WnonsyntgTtgG66121968-21970
S136C136LnonsyntGTtTA210.521968-21970
S136C136LnonsyntGTtTG210.521968-21970
S136C136PnonsynTGtCCt11121968-21970
S136C136del2deltGTt--11121968-21970
S136C136HnonsynTGtCAt11121968-21970

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S136C136FtGttTt727727All0.000139
S136C136delTGT---471471All0.00009
S136C136FtGttTt217217C.1.20.923404
S136C136FtGttTt181181B.1.6300.947644
S136C136delTGT---159159AT.10.815385
S136C136GTgtGgt134135All0.000026
S136C136GTgTGgG1135All0
S136C136CtgTtgC8484All0.000016
S136C136GTgtGgt6565B.1.4290.001529
S136C136delTGT---4242AY.430.000186
S136C136RTgtCgt3739All0.000007
S136C136RTgTCgG139All0
S136C136RTgTCgC139All0
S136C136delTGT---3535AY.40.000054
S136C136FtGttTt3333AY.450.004016
S136C136CtgTtgC3131AY.440.000189
S136C136FtGttTt3131C.36.3.10.084239
S136C136FtGttTt2828B.1.1.70.000025
S136C136YtGttAt2727All0.000005
S136C136delTGT---2525B.1.1.70.000022
S136C136FtGttTt2323B.1.214.20.013789
S136C136FtGttTt2222B.1.1.5240.458333
S136C136delTGT---2121B.1.5760.019039
S136C136STgtAgt1018All0.000002
S136C136StGttCt818All0.000002
S136C136FtGttTt1818AY.40.000028
S136C136FtGttTt1818B.1.6370.001315
S136C136FtGttTt1717B.10.000156
S136C136delTGT---1616AY.4.20.000347
S136C136delTGT---1515AY.250.00009
S136C136FtGttTt1515B.1.617.20.000056
S136C136FtGttTt1414B.1.10.000254
S136C136delTGT---1212AY.34.10.006119
S136C136del1tgTtg-511All0.000001
S136C136del1Tgt-gt311All0.000001
S136C136del1TGT-NN111All0
S136C136del1TGt-At111All0
S136C136del1tGtt-t111All0
S136C136delTGT---1111B.10.000101
S136C136RTgtCgt1111B.1.20.000097
S136C136delTGT---1111B.1.617.20.000041
S136C136delTGT---1010AY.1020.000265
S136C136delTGT---1010AY.440.000061
S136C136GTgtGgt99AY.430.00004
S136C136CtgTtgC99AY.460.000937
S136C136YtGttAt99B.1.6380.473684
S136C136XtgTtgA88All0.000002
S136C136FtGttTt88AY.1030.00005
S136C136delTGT---88AY.90.000541
S136C136GTgtGgt88B.10.000073
S136C136GTgtGgt88B.1.4270.000404
S136C136WtgTtgG66All0.000001
S136C136delTGT---66AY.420.000241
S136C136GTgtGgt66B.1.10.000109
S136C136delTGT---66B.1.1770.000079
S136C136CtgTtgC66B.1.1770.000079
S136C136FtGttTt66B.1.5250.000679
S136C136GTgtGgt45AY.330.000267
S136C136GTgTGgG15AY.330.000067
S136C136StGttCt45AY.40.000006
S136C136STgtAgt15AY.40.000002
S136C136delTGT---55AY.4.2.10.000745
S136C136FtGttTt55AY.430.000022
S136C136FtGttTt55P.30.007974
S136C136delTGT---440.222222
S136C136delTGT---44AY.1200.000149
S136C136FtGttTt44AY.380.001997
S136C136CtgTtgC44AY.40.000006
S136C136FtGttTt44AY.75.10.000721
S136C136RTgtCgt44B.1.1.70.000004
S136C136CtgTtgC44B.1.20.000035
S136C136GTgtGgt44R.10.00036
S136C136delTGT---33AY.1080.003308
S136C136YtGttAt33AY.40.000005
S136C136RTgtCgt33AY.40.000005
S136C136delTGT---33AY.4.50.000322
S136C136STgtAgt33AY.430.000013
S136C136RTgtCgt23AY.440.000012
S136C136RTgTCgC13AY.440.000006
S136C136FtGttTt33AY.750.000168
S136C136RTgtCgt33B.10.000027
S136C136FtGttTt33B.1.20.000026
S136C136delTGT---33B.1.20.000026
S136C136GTgtGgt33B.1.20.000026
S136C136GTgtGgt33B.1.5960.000261
S136C136FtGttTt220.111111
S136C136LtGTtTG12All0
S136C136LtGTtTA12All0
S136C136FtGttTt22AY.1020.000053
S136C136GTgtGgt22AY.1020.000053
S136C136delTGT---22AY.1030.000012
S136C136FtGttTt22AY.1160.000574
S136C136delTGT---22AY.1190.000071
S136C136GTgtGgt22AY.210.003795
S136C136FtGttTt22AY.230.000139
S136C136FtGttTt22AY.250.000012
S136C136delTGT---22AY.30.00002
S136C136FtGttTt22AY.390.000049
S136C136GTgtGgt22AY.39.20.003082
S136C136XtgTtgA22AY.40.000003
S136C136CtgTtgC22AY.4.20.000043
S136C136YtGttAt22AY.430.000009
S136C136del1Tgt-gt12AY.430.000004
S136C136del1TGT-NN12AY.430.000004
S136C136FtGttTt22AY.440.000012
S136C136STgtAgt22AY.50.000041
S136C136FtGttTt22AY.530.000575
S136C136GTgtGgt22AY.60.000082
S136C136delTGT---22AY.650.001066
S136C136FtGttTt22AY.680.000547
S136C136FtGttTt22AY.690.000373
S136C136delTGT---22AY.850.000854
S136C136delTGT---22AY.990.002099
S136C136YtGttAt22B.10.000018
S136C136delTGT---22B.1.10.000036
S136C136delTGT---22B.1.1.3110.000716
S136C136FtGttTt22B.1.1.4020.022222
S136C136CtgTtgC22B.1.1.70.000002
S136C136YtGttAt22B.1.1.70.000002
S136C136StGttCt12B.1.1.70.000001
S136C136STgtAgt12B.1.1.70.000001
S136C136FtGttTt22B.1.2430.000139
S136C136CtgTtgC22B.1.3510.000059
S136C136delTGT---22B.1.4290.000047
S136C136RTgtCgt22B.1.4290.000047
S136C136FtGttTt22B.1.4560.006536
S136C136FtGttTt22B.1.5870.003795
S136C136delTGT---22B.1.5950.000522
S136C136CtgTtgC22B.1.617.20.000008
S136C136delTGT---22C.370.000232
S136C136FtGttTt22P.10.000032
S136C136CtgTtgC22P.1.140.000096
S136C136delTGT---22P.1.150.000465
S136C136YtGttAt110.055556
S136C136PTGtCCt11All0
S136C136del2tGTt--11All0
S136C136HTGtCAt11All0
S136C136del2tGTt--11AT.10.005128
S136C136RTgtCgt11AY.1000.000046
S136C136RTgtCgt11AY.1020.000027
S136C136CtgTtgC11AY.1020.000027
S136C136CtgTtgC11AY.1030.000006
S136C136GTgtGgt11AY.1030.000006
S136C136YtGttAt11AY.1030.000006
S136C136delTGT---11AY.1070.000466
S136C136RTgtCgt11AY.1070.000466
S136C136RTgtCgt11AY.1130.000142
S136C136RTgtCgt11AY.1140.000231
S136C136FtGttTt11AY.1170.000085
S136C136delTGT---11AY.1180.000063
S136C136FtGttTt11AY.1190.000035
S136C136GTgtGgt11AY.1200.000037
S136C136FtGttTt11AY.1200.000037
S136C136del1tgTtg-11AY.1210.000135
S136C136del1tgTtg-11AY.160.00038
S136C136FtGttTt11AY.190.00114
S136C136FtGttTt11AY.200.000039
S136C136delTGT---11AY.210.001898
S136C136CtgTtgC11AY.230.00007
S136C136GTgtGgt11AY.230.00007
S136C136YtGttAt11AY.230.00007
S136C136CtgTtgC11AY.23.10.000417
S136C136FtGttTt11AY.30.00001
S136C136del1TGt-At11AY.30.00001
S136C136FtGttTt11AY.3.10.000085
S136C136FtGttTt11AY.320.000532
S136C136GTgtGgt11AY.320.000532
S136C136delTGT---11AY.330.000067
S136C136delTGT---11AY.340.000097
S136C136FtGttTt11AY.34.10.00051
S136C136delTGT---11AY.360.000148
S136C136delTGT---11AY.390.000025
S136C136WtgTtgG11AY.390.000025
S136C136StGttCt11AY.39.10.00004
S136C136delTGT---11AY.39.10.00004
S136C136GTgtGgt11AY.39.10.00004
S136C136GTgtGgt11AY.40.000002
S136C136WtgTtgG11AY.40.000002
S136C136del1tgTtg-11AY.4.10.000737
S136C136RTgTCgG11AY.4.2.10.000149
S136C136CtgTtgC11AY.4.50.000107
S136C136CtgTtgC11AY.420.00004
S136C136GTgtGgt11AY.420.00004
S136C136WtgTtgG11AY.430.000004
S136C136CtgTtgC11AY.430.000004
S136C136RTgtCgt11AY.430.000004
S136C136YtGttAt11AY.440.000006
S136C136GTgtGgt11AY.440.000006
S136C136del1Tgt-gt11AY.440.000006
S136C136STgtAgt11AY.460.000104
S136C136delTGT---11AY.460.000104
S136C136GTgtGgt11AY.460.000104
S136C136FtGttTt11AY.46.10.001027
S136C136YtGttAt11AY.46.30.000934
S136C136RTgtCgt11AY.46.60.000072
S136C136FtGttTt11AY.46.60.000072
S136C136CtgTtgC11AY.46.60.000072
S136C136delTGT---11AY.470.000031
S136C136delTGT---11AY.50.000021
S136C136delTGT---11AY.540.000095
S136C136delTGT---11AY.590.00053
S136C136FtGttTt11AY.60.000041
S136C136delTGT---11AY.600.000938
S136C136delTGT---11AY.620.000436
S136C136delTGT---11AY.670.000464
S136C136del1tGtt-t11AY.670.000464
S136C136RTgtCgt11AY.690.000187
S136C136FtGttTt11AY.7.10.000113
S136C136delTGT---11AY.7.20.000559
S136C136FtGttTt11AY.700.000209
S136C136delTGT---11AY.720.001361
S136C136PTGtCCt11AY.750.000056
S136C136delTGT---11AY.750.000056
S136C136delTGT---11AY.840.000437
S136C136WtgTtgG11AY.840.000437
S136C136FtGttTt11AY.910.00073
S136C136STgtAgt11AY.98.10.000048
S136C136delTGT---11AY.98.10.000048
S136C136delTGT---11AY.99.10.001553
S136C136delTGT---11AZ.50.003509
S136C136XtgTtgA11B.10.000009
S136C136LtGTtTA11B.1.10.000018
S136C136XtgTtgA11B.1.10.000018
S136C136FtGttTt11B.1.1.10.000327
S136C136FtGttTt11B.1.1.1890.001513
S136C136RTgtCgt11B.1.1.2160.00089
S136C136delTGT---11B.1.1.2360.006897
S136C136RTgtCgt11B.1.1.2440.015385
S136C136delTGT---11B.1.1.3060.000438
S136C136delTGT---11B.1.1.3180.000302
S136C136delTGT---11B.1.1.370.000193
S136C136FtGttTt11B.1.1.3720.000689
S136C136CtgTtgC11B.1.1.4650.015625
S136C136CtgTtgC11B.1.1.5190.00004
S136C136GTgtGgt11B.1.1.70.000001
S136C136del1Tgt-gt11B.1.1.70.000001
S136C136FtGttTt11B.1.1280.000635
S136C136FtGttTt11B.1.1600.000031
S136C136delTGT---11B.1.1600.000031
S136C136GTgtGgt11B.1.1600.000031
S136C136delTGT---11B.1.160.230.004831
S136C136FtGttTt11B.1.1770.000013
S136C136delTGT---11B.1.177.100.000878
S136C136delTGT---11B.1.177.210.000076
S136C136delTGT---11B.1.177.40.000211
S136C136delTGT---11B.1.177.540.000606
S136C136FtGttTt11B.1.177.560.000668
S136C136CtgTtgC11B.1.177.690.001484
S136C136GTgtGgt11B.1.177.730.000566
S136C136XtgTtgA11B.1.20.000009
S136C136delTGT---11B.1.2210.000071
S136C136StGttCt11B.1.2210.000071
S136C136FtGttTt11B.1.2210.000071
S136C136del1tgTtg-11B.1.2320.000537
S136C136delTGT---11B.1.2340.000132
S136C136FtGttTt11B.1.2410.000812
S136C136YtGttAt11B.1.2430.00007
S136C136FtGttTt11B.1.258.110.000396
S136C136FtGttTt11B.1.258.170.000104
S136C136FtGttTt11B.1.3430.020833
S136C136CtgTtgC11B.1.3490.000715
S136C136FtGttTt11B.1.3510.00003
S136C136CtgTtgC11B.1.36.190.009259
S136C136FtGttTt11B.1.3690.000285
S136C136GTgtGgt11B.1.3750.00082
S136C136FtGttTt11B.1.4270.00005
S136C136RTgtCgt11B.1.438.10.000107
S136C136FtGttTt11B.1.438.10.000107
S136C136XtgTtgA11B.1.5030.002488
S136C136CtgTtgC11B.1.5250.000113
S136C136YtGttAt11B.1.5260.000024
S136C136FtGttTt11B.1.5260.000024
S136C136CtgTtgC11B.1.5670.003333
S136C136FtGttTt11B.1.5760.000907
S136C136CtgTtgC11B.1.5770.000687
S136C136delTGT---11B.1.5850.027778
S136C136GTgtGgt11B.1.5950.000261
S136C136CtgTtgC11B.1.5960.000087
S136C136FtGttTt11B.1.5970.00463
S136C136GTgtGgt11B.1.5990.00365
S136C136HTGtCAt11B.1.617.10.000129
S136C136FtGttTt11B.1.617.10.000129
S136C136StGttCt11B.1.617.20.000004
S136C136del1tgTtg-11B.1.617.20.000004
S136C136XtgTtgA11B.1.617.20.000004
S136C136YtGttAt11B.1.617.20.000004
S136C136WtgTtgG11B.1.617.20.000004
S136C136delTGT---11B.1.6200.000946
S136C136delTGT---11B.1.6210.000089
S136C136GTgtGgt11B.1.6210.000089
S136C136FtGttTt11B.1.6230.000536
S136C136CtgTtgC11B.1.6300.005236
S136C136XtgTtgA11B.1.6370.000073
S136C136LtGTtTG11B.1.90.006173
S136C136WtgTtgG11B.1.90.006173
S136C136FtGttTt11B.1.90.006173
S136C136FtGttTt11C.10.002392
S136C136FtGttTt11C.350.000774
S136C136FtGttTt11C.370.000116
S136C136CtgTtgC11C.370.000116
S136C136RTgtCgt11D.20.000075
S136C136FtGttTt11D.20.000075
S136C136CtgTtgC11L.30.003546
S136C136YtGttAt11P.30.001595
S136C136FtGttTt11Q.10.000126
S136C136STgtAgt11R.10.00009