CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 13

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S13S13InonsynaGtaTt6202762027121599-21601
S13S13TnonsynaGtaCt23262326121599-21601
S13S13NnonsynaGtaAt215215121599-21601
S13S13SsynagTagC1681670.99404821599-21601
S13S13SsynAGtTCt16810.0059523821599-21601
S13S13GnonsynAgtGgt146146121599-21601
S13S13CnonsynAgtTgt80780.97521599-21601
S13S13CnonsynAgTTgC8020.02521599-21601
S13S13deldelAGT---5858121599-21601
S13S13RnonsynagTagA1270.58333321599-21601
S13S13RnonsynAgtCgt1240.33333321599-21601
S13S13RnonsynagTagG1210.083333321599-21601
S13S13del1delagTag-540.821599-21601
S13S13del1delaGta-t510.221599-21601
S13S13LnonsynAGtCTt33121599-21601
S13S13VnonsynAGtGTt22121599-21601
S13S13del2delAGt--t210.521599-21601
S13S13del2delaGTa--210.521599-21601

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S13S13IaGtaTt6202762027All0.011863
S13S13IaGtaTt4089540895B.1.4290.962213
S13S13IaGtaTt1893418934B.1.4270.956118
S13S13TaGtaCt23262326All0.000445
S13S13TaGtaCt12961296AY.4.20.028109
S13S13IaGtaTt700700B.10.006412
S13S13TaGtaCt666666AY.40.001037
S13S13IaGtaTt427427B.1.1.70.000382
S13S13NaGtaAt215215All0.000041
S13S13TaGtaCt175175B.1.1.70.000157
S13S13SagTagC167168All0.000032
S13S13SAGtTCt1168All0
S13S13GAgtGgt146146All0.000028
S13S13IaGtaTt119119B.1.20.001048
S13S13GAgtGgt8787B.1.1.70.000078
S13S13IaGtaTt8383B.1.429.11
S13S13CAgtTgt7880All0.000015
S13S13CAgTTgC280All0
S13S13IaGtaTt6868AY.40.000106
S13S13delAGT---5858All0.000011
S13S13IaGtaTt5555B.1.10.000998
S13S13TaGtaCt5151AY.1030.000317
S13S13NaGtaAt5151B.1.1.70.000046
S13S13IaGtaTt4646A.2.50.022954
S13S13SagTagC4546B.1.1.70.00004
S13S13SAGtTCt146B.1.1.70.000001
S13S13TaGtaCt4545B.1.617.20.000169
S13S13IaGtaTt4444AY.430.000195
S13S13SagTagC3131B.1.2340.00409
S13S13IaGtaTt3030B.1.1.2200.055762
S13S13CAgtTgt2929AY.250.000174
S13S13NaGtaAt2929B.1.20.000255
S13S13IaGtaTt2828B.1.617.20.000105
S13S13IaGtaTt2727B.1.5960.002353
S13S13TaGtaCt2626AY.440.000158
S13S13IaGtaTt2626C.36.30.014748
S13S13GAgtGgt2424AY.200.000933
S13S13NaGtaAt2323B.1.1490.078767
S13S13IaGtaTt2121B.1.3670.01664
S13S13IaGtaTt2020B.1.1080.116279
S13S13IaGtaTt1818AY.1030.000112
S13S13NaGtaAt1818AY.1040.035714
S13S13NaGtaAt1818AY.1200.000669
S13S13IaGtaTt1818AY.440.00011
S13S13IaGtaTt1717B.1.5950.004436
S13S13NaGtaAt1616AY.40.000025
S13S13IaGtaTt1616B.1.1.5190.000635
S13S13IaGtaTt1515B.1.3110.004119
S13S13NaGtaAt1414B.1.617.20.000053
S13S13CAgtTgt1313AY.390.000321
S13S13SagTagC1313AY.430.000058
S13S13IaGtaTt1313B.1.1770.000171
S13S13IaGtaTt1313B.1.575.10.031707
S13S13RagTagA712All0.000001
S13S13RAgtCgt412All0.000001
S13S13RagTagG112All0
S13S13IaGtaTt1212AY.250.000072
S13S13IaGtaTt1212AY.30.000119
S13S13IaGtaTt1212B.1.6180.048387
S13S13IaGtaTt1111B.1.3360.026829
S13S13IaGtaTt1111B.1.5250.001245
S13S13SagTagC1111B.1.617.20.000041
S13S13SagTagC1010AY.250.00006
S13S13IaGtaTt99B.1.1.4160.008145
S13S13IaGtaTt99B.1.5610.003573
S13S13SagTagC77AY.40.000011
S13S13NaGtaAt77B.10.000064
S13S13TaGtaCt77P.30.011164
S13S13IaGtaTt66AY.1130.000854
S13S13delAGT---66AY.330.000401
S13S13TaGtaCt66AY.390.000148
S13S13NaGtaAt66B0.000767
S13S13GAgtGgt66B.1.1.250.003411
S13S13IaGtaTt66B.1.1.3690.002677
S13S13CAgtTgt66B.1.1.70.000005
S13S13IaGtaTt66B.1.2390.007326
S13S13IaGtaTt66B.1.2580.000399
S13S13IaGtaTt66B.1.5260.000141
S13S13IaGtaTt66B.1.6090.002876
S13S13IaGtaTt66B.1.621.10.003035
S13S13IaGtaTt66B.1.6230.003219
S13S13del1agTag-45All0.000001
S13S13del1aGta-t15All0
S13S13CAgtTgt55AY.1140.001156
S13S13TaGtaCt55AY.1210.000677
S13S13IaGtaTt55AY.50.000103
S13S13IaGtaTt55B0.000639
S13S13IaGtaTt55B.1.1.2140.000277
S13S13IaGtaTt55B.1.1.3350.064935
S13S13IaGtaTt55B.1.177.120.000758
S13S13IaGtaTt55B.1.3510.000149
S13S13CAgtTgt240.111111
S13S13CAgTTgC240.111111
S13S13SagTagC44AY.120.10.001284
S13S13NaGtaAt44AY.250.000024
S13S13GAgtGgt44AY.40.000006
S13S13CAgtTgt44AY.40.000006
S13S13IaGtaTt44AY.4.20.000087
S13S13SagTagC44AY.440.000024
S13S13IaGtaTt44AY.60.000165
S13S13IaGtaTt44AY.670.001857
S13S13IaGtaTt44AY.710.0019
S13S13SagTagC44B.10.000037
S13S13delAGT---44B.1.10.000073
S13S13IaGtaTt44B.1.1.250.002274
S13S13delAGT---44B.1.1.70.000004
S13S13IaGtaTt44B.1.3240.006421
S13S13IaGtaTt44B.1.940.108108
S13S13IaGtaTt44C.350.003096
S13S13IaGtaTt44D.20.0003
S13S13IaGtaTt44P.10.000063
S13S13IaGtaTt44P.20.000747
S13S13LAGtCTt33All0.000001
S13S13TaGtaCt33AY.1000.000138
S13S13NaGtaAt33AY.1020.00008
S13S13IaGtaTt33AY.1020.00008
S13S13SagTagC33AY.1030.000019
S13S13TaGtaCt33AY.1170.000254
S13S13IaGtaTt33AY.1170.000254
S13S13IaGtaTt33AY.1180.000188
S13S13SagTagC33AY.260.000085
S13S13SagTagC33AY.30.00003
S13S13TaGtaCt33AY.430.000013
S13S13GAgtGgt33AY.430.000013
S13S13delAGT---33AY.440.000018
S13S13CAgtTgt33AY.50.000062
S13S13IaGtaTt33AY.680.000821
S13S13IaGtaTt33AY.750.000168
S13S13NaGtaAt33AY.9.20.00011
S13S13TaGtaCt33B.10.000027
S13S13delAGT---33B.10.000027
S13S13IaGtaTt33B.1.1.10.00098
S13S13IaGtaTt33B.1.1.1920.006928
S13S13IaGtaTt33B.1.1.2690.00406
S13S13IaGtaTt33B.1.2320.001612
S13S13IaGtaTt33B.1.2410.002435
S13S13IaGtaTt33B.1.3200.003736
S13S13IaGtaTt33B.1.5800.012195
S13S13IaGtaTt33B.1.5870.005693
S13S13IaGtaTt33B.1.6210.000266
S13S13IaGtaTt33C.370.000348
S13S13SagTagC33P.10.000047
S13S13TaGtaCt33P.10.000047
S13S13delAGT---33P.10.000047
S13S13IaGtaTt33P.1.10.000953
S13S13IaGtaTt33R.10.00027
S13S13IaGtaTt220.111111
S13S13RAgtCgt220.111111
S13S13SagTagC220.111111
S13S13LAGtCTt220.111111
S13S13IaGtaTt22A.2.5.20.003145
S13S13VAGtGTt22All0
S13S13del2aGTa--12All0
S13S13del2AGt--t12All0
S13S13NaGtaAt22AY.1030.000012
S13S13IaGtaTt22AY.1200.000074
S13S13IaGtaTt22AY.200.000078
S13S13IaGtaTt22AY.230.000139
S13S13TaGtaCt22AY.250.000012
S13S13delAGT---22AY.250.000012
S13S13TaGtaCt22AY.260.000057
S13S13IaGtaTt22AY.260.000057
S13S13NaGtaAt22AY.30.00002
S13S13IaGtaTt22AY.330.000134
S13S13IaGtaTt22AY.340.000194
S13S13CAgtTgt22AY.360.000296
S13S13IaGtaTt22AY.390.000049
S13S13IaGtaTt22AY.39.10.000079
S13S13delAGT---22AY.40.000003
S13S13RagTagG12AY.40.000002
S13S13RagTagA12AY.40.000002
S13S13IaGtaTt22AY.420.00008
S13S13TaGtaCt22AY.420.00008
S13S13delAGT---22AY.430.000009
S13S13NaGtaAt22AY.430.000009
S13S13CAgtTgt22AY.440.000012
S13S13IaGtaTt22AY.46.60.000144
S13S13CAgtTgt22AY.470.000062
S13S13IaGtaTt22AY.470.000062
S13S13TaGtaCt22AY.50.000041
S13S13IaGtaTt22AY.530.000575
S13S13IaGtaTt22AY.7.10.000225
S13S13NaGtaAt22AY.750.000112
S13S13SagTagC22AY.90.000135
S13S13TaGtaCt22AY.910.001461
S13S13RagTagA12B0.000128
S13S13RAgtCgt12B0.000128
S13S13CAgtTgt22B.10.000018
S13S13IaGtaTt22B.1.1.1180.020408
S13S13IaGtaTt22B.1.1.2290.011494
S13S13IaGtaTt22B.1.1.3180.000604
S13S13IaGtaTt22B.1.1.5070.017391
S13S13SagTagC22B.1.1.5230.003125
S13S13IaGtaTt22B.1.1570.00597
S13S13GAgtGgt22B.1.1770.000026
S13S13GAgtGgt22B.1.177.440.001038
S13S13IaGtaTt22B.1.177.730.001133
S13S13SagTagC22B.1.20.000018
S13S13IaGtaTt22B.1.2340.000264
S13S13IaGtaTt22B.1.2430.000139
S13S13IaGtaTt22B.1.2810.043478
S13S13delAGT---22B.1.3510.000059
S13S13SagTagC22B.1.3510.000059
S13S13IaGtaTt22B.1.3690.00057
S13S13IaGtaTt22B.1.3750.001639
S13S13VAGtGTt22B.1.4270.000101
S13S13delAGT---22B.1.4290.000047
S13S13CAgtTgt22B.1.438.10.000215
S13S13IaGtaTt22B.1.466.20.000782
S13S13TaGtaCt22B.1.466.20.000782
S13S13IaGtaTt22B.1.5170.000854
S13S13delAGT---22B.1.5250.000226
S13S13IaGtaTt22B.1.5640.000852
S13S13TaGtaCt22B.1.617.10.000258
S13S13delAGT---22B.1.617.20.000008
S13S13GAgtGgt22B.1.617.20.000008
S13S13TaGtaCt22C.370.000232
S13S13GAgtGgt22P.10.000032
S13S13IaGtaTt22P.1.100.000539
S13S13NaGtaAt22P.1.140.000096
S13S13IaGtaTt22Q.80.00033
S13S13IaGtaTt11A.20.000662
S13S13delAGT---11A.2.40.003367
S13S13NaGtaAt11A.23.10.000704
S13S13IaGtaTt11AY.1000.000046
S13S13delAGT---11AY.1000.000046
S13S13SagTagC11AY.1010.00049
S13S13delAGT---11AY.1010.00049
S13S13TaGtaCt11AY.1020.000027
S13S13delAGT---11AY.1020.000027
S13S13CAgtTgt11AY.1020.000027
S13S13GAgtGgt11AY.1030.000006
S13S13delAGT---11AY.1030.000006
S13S13NaGtaAt11AY.116.10.000311
S13S13delAGT---11AY.116.10.000311
S13S13RagTagA11AY.1170.000085
S13S13CAgtTgt11AY.1170.000085
S13S13TaGtaCt11AY.1180.000063
S13S13SagTagC11AY.1190.000035
S13S13NaGtaAt11AY.1190.000035
S13S13NaGtaAt11AY.120.000316
S13S13TaGtaCt11AY.1200.000037
S13S13IaGtaTt11AY.1210.000135
S13S13IaGtaTt11AY.130.000161
S13S13TaGtaCt11AY.16.10.00047
S13S13GAgtGgt11AY.230.00007
S13S13TaGtaCt11AY.290.000016
S13S13GAgtGgt11AY.290.000016
S13S13IaGtaTt11AY.3.10.000085
S13S13TaGtaCt11AY.340.000097
S13S13IaGtaTt11AY.370.000316
S13S13SagTagC11AY.390.000025
S13S13IaGtaTt11AY.4.50.000107
S13S13NaGtaAt11AY.420.00004
S13S13SagTagC11AY.420.00004
S13S13CAgtTgt11AY.420.00004
S13S13delAGT---11AY.420.00004
S13S13RagTagA11AY.440.000006
S13S13TaGtaCt11AY.450.000122
S13S13IaGtaTt11AY.460.000104
S13S13SagTagC11AY.460.000104
S13S13RagTagA11AY.470.000031
S13S13delAGT---11AY.470.000031
S13S13IaGtaTt11AY.510.000909
S13S13IaGtaTt11AY.520.000814
S13S13TaGtaCt11AY.540.000095
S13S13TaGtaCt11AY.550.000917
S13S13SagTagC11AY.590.00053
S13S13delAGT---11AY.60.000041
S13S13IaGtaTt11AY.660.00107
S13S13CAgtTgt11AY.660.00107
S13S13GAgtGgt11AY.670.000464
S13S13delAGT---11AY.680.000274
S13S13GAgtGgt11AY.790.001211
S13S13IaGtaTt11AY.820.001357
S13S13NaGtaAt11AY.840.000437
S13S13IaGtaTt11AY.90.000068
S13S13TaGtaCt11AY.9.10.000084
S13S13IaGtaTt11AY.9.20.000037
S13S13IaGtaTt11AY.920.000287
S13S13RagTagA11AY.980.000079
S13S13IaGtaTt11AY.980.000079
S13S13delAGT---11AY.980.000079
S13S13LAGtCTt11B0.000128
S13S13GAgtGgt11B.1.10.000018
S13S13TaGtaCt11B.1.10.000018
S13S13SagTagC11B.1.10.000018
S13S13del1agTag-11B.1.1.10.000327
S13S13IaGtaTt11B.1.1.1280.007092
S13S13GAgtGgt11B.1.1.1410.002012
S13S13IaGtaTt11B.1.1.1530.001095
S13S13IaGtaTt11B.1.1.2170.003636
S13S13GAgtGgt11B.1.1.2180.007692
S13S13IaGtaTt11B.1.1.2220.000204
S13S13IaGtaTt11B.1.1.2630.001558
S13S13IaGtaTt11B.1.1.270.00565
S13S13IaGtaTt11B.1.1.280.000311
S13S13SagTagC11B.1.1.2890.002083
S13S13IaGtaTt11B.1.1.2940.001266
S13S13IaGtaTt11B.1.1.3060.000438
S13S13NaGtaAt11B.1.1.3060.000438
S13S13del1aGta-t11B.1.1.3060.000438
S13S13delAGT---11B.1.1.3150.008475
S13S13IaGtaTt11B.1.1.3400.045455
S13S13IaGtaTt11B.1.1.390.00051
S13S13IaGtaTt11B.1.1.4000.05
S13S13SagTagC11B.1.1.4090.002833
S13S13IaGtaTt11B.1.1.4090.002833
S13S13IaGtaTt11B.1.1.4120.007634
S13S13IaGtaTt11B.1.1.4320.001266
S13S13delAGT---11B.1.1.4330.001425
S13S13delAGT---11B.1.1.460.004367
S13S13IaGtaTt11B.1.1.4640.001473
S13S13IaGtaTt11B.1.1.5170.006803
S13S13GAgtGgt11B.1.1.5190.00004
S13S13CAgtTgt11B.1.1.5260.003546
S13S13SagTagC11B.1.1.580.005376
S13S13del2aGTa--11B.1.1.70.000001
S13S13SagTagC11B.1.1.700.000341
S13S13NaGtaAt11B.1.1030.019231
S13S13IaGtaTt11B.1.1190.010526
S13S13IaGtaTt11B.1.120.008
S13S13TaGtaCt11B.1.130.002375
S13S13IaGtaTt11B.1.1390.000733
S13S13IaGtaTt11B.1.1400.018868
S13S13IaGtaTt11B.1.1470.000756
S13S13del1agTag-11B.1.1600.000031
S13S13IaGtaTt11B.1.177.230.003236
S13S13IaGtaTt11B.1.177.240.001295
S13S13IaGtaTt11B.1.177.400.005155
S13S13IaGtaTt11B.1.177.410.0025
S13S13IaGtaTt11B.1.177.460.000918
S13S13IaGtaTt11B.1.177.560.000668
S13S13NaGtaAt11B.1.177.600.000218
S13S13delAGT---11B.1.177.680.015152
S13S13IaGtaTt11B.1.177.70.000165
S13S13IaGtaTt11B.1.177.760.002494
S13S13RagTagA11B.1.177.810.000189
S13S13IaGtaTt11B.1.177.830.001481
S13S13delAGT---11B.1.177.830.001481
S13S13IaGtaTt11B.1.1900.01
S13S13del2AGt--t11B.1.20.000009
S13S13delAGT---11B.1.20.000009
S13S13SagTagC11B.1.2060.000816
S13S13IaGtaTt11B.1.2210.000071
S13S13IaGtaTt11B.1.2400.000216
S13S13GAgtGgt11B.1.2430.00007
S13S13delAGT---11B.1.258.110.000396
S13S13IaGtaTt11B.1.258.30.001675
S13S13IaGtaTt11B.1.2800.007143
S13S13SagTagC11B.1.3080.034483
S13S13GAgtGgt11B.1.3110.000275
S13S13IaGtaTt11B.1.3430.020833
S13S13IaGtaTt11B.1.3440.008197
S13S13IaGtaTt11B.1.3500.002933
S13S13RAgtCgt11B.1.3510.00003
S13S13IaGtaTt11B.1.351.30.000876
S13S13IaGtaTt11B.1.351.50.0006
S13S13IaGtaTt11B.1.3540.043478
S13S13IaGtaTt11B.1.3560.001727
S13S13SagTagC11B.1.36.10.00114
S13S13CAgtTgt11B.1.36.180.00042
S13S13TaGtaCt11B.1.36.290.000517
S13S13del1agTag-11B.1.36.370.002778
S13S13IaGtaTt11B.1.3660.004878
S13S13del1agTag-11B.1.3690.000285
S13S13TaGtaCt11B.1.3910.001127
S13S13IaGtaTt11B.1.4000.000429
S13S13SagTagC11B.1.4030.003268
S13S13IaGtaTt11B.1.4040.001302
S13S13NaGtaAt11B.1.4220.000812
S13S13TaGtaCt11B.1.4270.00005
S13S13IaGtaTt11B.1.438.10.000107
S13S13IaGtaTt11B.1.4410.009615
S13S13IaGtaTt11B.1.4510.008197
S13S13IaGtaTt11B.1.4680.005714
S13S13IaGtaTt11B.1.4700.001404
S13S13delAGT---11B.1.4860.111111
S13S13IaGtaTt11B.1.4970.000315
S13S13GAgtGgt11B.1.5090.000866
S13S13IaGtaTt11B.1.5100.026316
S13S13GAgtGgt11B.1.5260.000024
S13S13IaGtaTt11B.1.5400.009709
S13S13IaGtaTt11B.1.5750.000303
S13S13IaGtaTt11B.1.5760.000907
S13S13IaGtaTt11B.1.5900.004545
S13S13IaGtaTt11B.1.6030.010638
S13S13delAGT---11B.1.6200.000946
S13S13SagTagC11B.1.6210.000089
S13S13TaGtaCt11B.1.6210.000089
S13S13IaGtaTt11B.1.6330.041667
S13S13IaGtaTt11B.1.6370.000073
S13S13IaGtaTt11B.1.9.20.1
S13S13IaGtaTt11B.30.000831
S13S13IaGtaTt11B.4.10.018868
S13S13NaGtaAt11B.6.30.026316
S13S13IaGtaTt11C.10.002392
S13S13delAGT---11C.36.30.000567
S13S13TaGtaCt11D.20.000075
S13S13NaGtaAt11P.10.000016
S13S13GAgtGgt11P.1.140.000048
S13S13TaGtaCt11P.1.140.000048
S13S13IaGtaTt11P.1.60.001946
S13S13IaGtaTt11P.30.001595
S13S13NaGtaAt11Q.10.000126
S13S13IaGtaTt11W.10.008696