CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1264 | V1264L | nonsyn | Gtg | Ttg | 70660 | 61539 | 0.870917 | 25352-25354 | |
S | 1264 | V1264L | nonsyn | Gtg | Ctg | 70660 | 9108 | 0.128899 | 25352-25354 | |
S | 1264 | V1264L | nonsyn | GtG | TtA | 70660 | 6 | 0.0000849137 | 25352-25354 | |
S | 1264 | V1264L | nonsyn | GtG | CtT | 70660 | 5 | 0.0000707614 | 25352-25354 | |
S | 1264 | V1264L | nonsyn | GtG | CtA | 70660 | 2 | 0.0000283046 | 25352-25354 | |
S | 1264 | V1264V | syn | gtG | gtT | 5939 | 5750 | 0.968176 | 25352-25354 | |
S | 1264 | V1264V | syn | gtG | gtA | 5939 | 168 | 0.0282876 | 25352-25354 | |
S | 1264 | V1264V | syn | gtG | gtC | 5939 | 21 | 0.00353595 | 25352-25354 | |
S | 1264 | V1264A | nonsyn | gTg | gCg | 390 | 387 | 0.992308 | 25352-25354 | |
S | 1264 | V1264A | nonsyn | gTG | gCT | 390 | 2 | 0.00512821 | 25352-25354 | |
S | 1264 | V1264A | nonsyn | gTG | gCA | 390 | 1 | 0.0025641 | 25352-25354 | |
S | 1264 | V1264M | nonsyn | Gtg | Atg | 199 | 199 | 1 | 25352-25354 | |
S | 1264 | V1264del | del | GTG | --- | 155 | 155 | 1 | 25352-25354 | |
S | 1264 | V1264F | nonsyn | GtG | TtT | 120 | 120 | 1 | 25352-25354 | |
S | 1264 | V1264E | nonsyn | gTg | gAg | 23 | 16 | 0.695652 | 25352-25354 | |
S | 1264 | V1264E | nonsyn | gTG | gAA | 23 | 7 | 0.304348 | 25352-25354 | |
S | 1264 | V1264G | nonsyn | gTg | gGg | 17 | 13 | 0.764706 | 25352-25354 | |
S | 1264 | V1264G | nonsyn | gTG | gGA | 17 | 4 | 0.235294 | 25352-25354 | |
S | 1264 | V1264K | nonsyn | GTg | AAg | 11 | 6 | 0.545455 | 25352-25354 | |
S | 1264 | V1264K | nonsyn | GTG | AAA | 11 | 5 | 0.454545 | 25352-25354 | |
S | 1264 | V1264R | nonsyn | GTg | AGg | 11 | 4 | 0.363636 | 25352-25354 | |
S | 1264 | V1264R | nonsyn | GTG | AGA | 11 | 3 | 0.272727 | 25352-25354 | |
S | 1264 | V1264R | nonsyn | GTg | CGg | 11 | 2 | 0.181818 | 25352-25354 | |
S | 1264 | V1264R | nonsyn | GTG | CGA | 11 | 2 | 0.181818 | 25352-25354 | |
S | 1264 | V1264I | nonsyn | GtG | AtA | 10 | 6 | 0.6 | 25352-25354 | |
S | 1264 | V1264I | nonsyn | GtG | AtC | 10 | 3 | 0.3 | 25352-25354 | |
S | 1264 | V1264I | nonsyn | GtG | AtT | 10 | 1 | 0.1 | 25352-25354 | |
S | 1264 | V1264S | nonsyn | GTg | TCg | 8 | 7 | 0.875 | 25352-25354 | |
S | 1264 | V1264S | nonsyn | GTG | TCA | 8 | 1 | 0.125 | 25352-25354 | |
S | 1264 | V1264X | nonsyn | GTg | TAg | 5 | 2 | 0.4 | 25352-25354 | |
S | 1264 | V1264X | nonsyn | GTG | TAA | 5 | 2 | 0.4 | 25352-25354 | |
S | 1264 | V1264X | nonsyn | GTG | TGA | 5 | 1 | 0.2 | 25352-25354 | |
S | 1264 | V1264del1 | del | Gtg | -tg | 4 | 3 | 0.75 | 25352-25354 | |
S | 1264 | V1264D | nonsyn | gTG | gAT | 4 | 3 | 0.75 | 25352-25354 | |
S | 1264 | V1264Q | nonsyn | GTG | CAA | 4 | 2 | 0.5 | 25352-25354 | |
S | 1264 | V1264Q | nonsyn | GTg | CAg | 4 | 2 | 0.5 | 25352-25354 | |
S | 1264 | V1264del1 | del | gTg | g-g | 4 | 1 | 0.25 | 25352-25354 | |
S | 1264 | V1264D | nonsyn | gTG | gAC | 4 | 1 | 0.25 | 25352-25354 | |
S | 1264 | V1264T | nonsyn | GTG | ACT | 3 | 2 | 0.666667 | 25352-25354 | |
S | 1264 | V1264T | nonsyn | GTg | ACg | 3 | 1 | 0.333333 | 25352-25354 | |
S | 1264 | V1264W | nonsyn | GTg | TGg | 2 | 2 | 1 | 25352-25354 | |
S | 1264 | V1264del2 | del | GTg | --g | 2 | 2 | 1 | 25352-25354 | |
S | 1264 | V1264N | nonsyn | GTG | AAC | 1 | 1 | 1 | 25352-25354 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1264 | V1264L | Gtg | Ttg | 61539 | 70660 | All | 0.01177 |
S | 1264 | V1264L | Gtg | Ctg | 9108 | 70660 | All | 0.001742 |
S | 1264 | V1264L | GtG | TtA | 6 | 70660 | All | 0.000001 |
S | 1264 | V1264L | GtG | CtT | 5 | 70660 | All | 0.000001 |
S | 1264 | V1264L | GtG | CtA | 2 | 70660 | All | 0 |
S | 1264 | V1264L | Gtg | Ttg | 34149 | 34149 | AY.26 | 0.966764 |
S | 1264 | V1264L | Gtg | Ttg | 11809 | 11809 | AY.23 | 0.823673 |
S | 1264 | V1264L | Gtg | Ctg | 7970 | 7998 | AY.4.2 | 0.172859 |
S | 1264 | V1264L | Gtg | Ttg | 26 | 7998 | AY.4.2 | 0.000564 |
S | 1264 | V1264L | GtG | CtT | 2 | 7998 | AY.4.2 | 0.000043 |
S | 1264 | V1264V | gtG | gtT | 5750 | 5939 | All | 0.0011 |
S | 1264 | V1264V | gtG | gtA | 168 | 5939 | All | 0.000032 |
S | 1264 | V1264V | gtG | gtC | 21 | 5939 | All | 0.000004 |
S | 1264 | V1264L | Gtg | Ttg | 2302 | 2467 | B.1.1.7 | 0.002061 |
S | 1264 | V1264L | Gtg | Ctg | 160 | 2467 | B.1.1.7 | 0.000143 |
S | 1264 | V1264L | GtG | TtA | 5 | 2467 | B.1.1.7 | 0.000004 |
S | 1264 | V1264L | Gtg | Ttg | 2393 | 2393 | AY.23.1 | 0.998748 |
S | 1264 | V1264L | Gtg | Ttg | 1633 | 1908 | AY.4 | 0.002542 |
S | 1264 | V1264L | Gtg | Ctg | 275 | 1908 | AY.4 | 0.000428 |
S | 1264 | V1264V | gtG | gtT | 1657 | 1659 | B.1.617.2 | 0.006239 |
S | 1264 | V1264V | gtG | gtC | 2 | 1659 | B.1.617.2 | 0.000008 |
S | 1264 | V1264L | Gtg | Ttg | 1391 | 1391 | AY.65 | 0.741471 |
S | 1264 | V1264L | Gtg | Ttg | 1203 | 1345 | B.1.617.2 | 0.00453 |
S | 1264 | V1264L | Gtg | Ctg | 142 | 1345 | B.1.617.2 | 0.000535 |
S | 1264 | V1264V | gtG | gtT | 672 | 682 | AY.4 | 0.001046 |
S | 1264 | V1264V | gtG | gtA | 10 | 682 | AY.4 | 0.000016 |
S | 1264 | V1264V | gtG | gtT | 514 | 532 | B.1.1.7 | 0.00046 |
S | 1264 | V1264V | gtG | gtA | 14 | 532 | B.1.1.7 | 0.000013 |
S | 1264 | V1264V | gtG | gtC | 4 | 532 | B.1.1.7 | 0.000004 |
S | 1264 | V1264L | Gtg | Ttg | 504 | 504 | AY.71 | 0.23943 |
S | 1264 | V1264V | gtG | gtT | 474 | 476 | B.1.2 | 0.004174 |
S | 1264 | V1264V | gtG | gtC | 1 | 476 | B.1.2 | 0.000009 |
S | 1264 | V1264V | gtG | gtA | 1 | 476 | B.1.2 | 0.000009 |
S | 1264 | V1264V | gtG | gtT | 465 | 465 | AY.25 | 0.002797 |
S | 1264 | V1264A | gTg | gCg | 387 | 390 | All | 0.000074 |
S | 1264 | V1264A | gTG | gCT | 2 | 390 | All | 0 |
S | 1264 | V1264A | gTG | gCA | 1 | 390 | All | 0 |
S | 1264 | V1264L | Gtg | Ttg | 376 | 390 | AY.44 | 0.002289 |
S | 1264 | V1264L | Gtg | Ctg | 14 | 390 | AY.44 | 0.000085 |
S | 1264 | V1264L | Gtg | Ttg | 337 | 337 | AY.9 | 0.02278 |
S | 1264 | V1264L | Gtg | Ttg | 303 | 313 | AY.43 | 0.001342 |
S | 1264 | V1264L | Gtg | Ctg | 10 | 313 | AY.43 | 0.000044 |
S | 1264 | V1264L | Gtg | Ttg | 300 | 300 | AY.61 | 0.031433 |
S | 1264 | V1264L | Gtg | Ttg | 288 | 290 | B.1.258 | 0.019166 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 290 | B.1.258 | 0.000133 |
S | 1264 | V1264L | Gtg | Ctg | 282 | 286 | B.1.595 | 0.073591 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 286 | B.1.595 | 0.001044 |
S | 1264 | V1264L | Gtg | Ttg | 231 | 246 | AY.25 | 0.001389 |
S | 1264 | V1264L | Gtg | Ctg | 15 | 246 | AY.25 | 0.00009 |
S | 1264 | V1264V | gtG | gtT | 224 | 227 | AY.43 | 0.000992 |
S | 1264 | V1264V | gtG | gtA | 3 | 227 | AY.43 | 0.000013 |
S | 1264 | V1264L | Gtg | Ttg | 206 | 222 | B.1 | 0.001887 |
S | 1264 | V1264L | Gtg | Ctg | 14 | 222 | B.1 | 0.000128 |
S | 1264 | V1264L | GtG | CtA | 2 | 222 | B.1 | 0.000018 |
S | 1264 | V1264L | Gtg | Ttg | 207 | 208 | AY.6 | 0.008514 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 208 | AY.6 | 0.000041 |
S | 1264 | V1264M | Gtg | Atg | 199 | 199 | All | 0.000038 |
S | 1264 | V1264L | Gtg | Ttg | 131 | 196 | P.1 | 0.002064 |
S | 1264 | V1264L | Gtg | Ctg | 65 | 196 | P.1 | 0.001024 |
S | 1264 | V1264L | Gtg | Ttg | 190 | 194 | AY.103 | 0.00118 |
S | 1264 | V1264L | Gtg | Ctg | 4 | 194 | AY.103 | 0.000025 |
S | 1264 | V1264A | gTg | gCg | 184 | 184 | AY.34 | 0.017842 |
S | 1264 | V1264L | Gtg | Ttg | 168 | 170 | AY.75.1 | 0.030292 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 170 | AY.75.1 | 0.000361 |
S | 1264 | V1264del | GTG | --- | 155 | 155 | All | 0.00003 |
S | 1264 | V1264L | Gtg | Ttg | 154 | 155 | AY.118 | 0.009648 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 155 | AY.118 | 0.000063 |
S | 1264 | V1264L | Gtg | Ttg | 126 | 147 | AY.113 | 0.017941 |
S | 1264 | V1264L | Gtg | Ctg | 21 | 147 | AY.113 | 0.00299 |
S | 1264 | V1264L | Gtg | Ttg | 133 | 136 | B.1.36 | 0.019405 |
S | 1264 | V1264L | Gtg | Ctg | 3 | 136 | B.1.36 | 0.000438 |
S | 1264 | V1264L | Gtg | Ttg | 111 | 128 | B.1.2 | 0.000977 |
S | 1264 | V1264L | Gtg | Ctg | 17 | 128 | B.1.2 | 0.00015 |
S | 1264 | V1264L | Gtg | Ttg | 119 | 125 | D.2 | 0.00893 |
S | 1264 | V1264L | GtG | CtT | 3 | 125 | D.2 | 0.000225 |
S | 1264 | V1264L | Gtg | Ctg | 3 | 125 | D.2 | 0.000225 |
S | 1264 | V1264L | Gtg | Ttg | 91 | 123 | AY.3 | 0.000905 |
S | 1264 | V1264L | Gtg | Ctg | 32 | 123 | AY.3 | 0.000318 |
S | 1264 | V1264F | GtG | TtT | 120 | 120 | All | 0.000023 |
S | 1264 | V1264V | gtG | gtT | 118 | 120 | B.1.177 | 0.001554 |
S | 1264 | V1264V | gtG | gtC | 2 | 120 | B.1.177 | 0.000026 |
S | 1264 | V1264L | Gtg | Ttg | 116 | 118 | AY.102 | 0.003076 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 118 | AY.102 | 0.000053 |
S | 1264 | V1264V | gtG | gtT | 108 | 109 | AY.44 | 0.000657 |
S | 1264 | V1264V | gtG | gtA | 1 | 109 | AY.44 | 0.000006 |
S | 1264 | V1264V | gtG | gtT | 107 | 107 | AY.102 | 0.002837 |
S | 1264 | V1264L | Gtg | Ttg | 106 | 106 | AB.1 | 0.868852 |
S | 1264 | V1264L | Gtg | Ttg | 101 | 101 | B.1.617.1 | 0.013026 |
S | 1264 | V1264L | Gtg | Ttg | 86 | 88 | AY.39 | 0.002125 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 88 | AY.39 | 0.000049 |
S | 1264 | V1264V | gtG | gtA | 76 | 76 | AY.57 | 0.049869 |
S | 1264 | V1264V | gtG | gtT | 73 | 73 | B.1.1.70 | 0.024898 |
S | 1264 | V1264L | Gtg | Ttg | 70 | 71 | AY.16 | 0.026576 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 71 | AY.16 | 0.00038 |
S | 1264 | V1264L | Gtg | Ttg | 69 | 69 | AY.98.1 | 0.003342 |
S | 1264 | V1264V | gtG | gtT | 57 | 58 | AY.3 | 0.000567 |
S | 1264 | V1264V | gtG | gtA | 1 | 58 | AY.3 | 0.00001 |
S | 1264 | V1264L | Gtg | Ttg | 58 | 58 | AY.75 | 0.003249 |
S | 1264 | V1264V | gtG | gtT | 57 | 57 | B.1.258 | 0.003793 |
S | 1264 | V1264A | gTg | gCg | 54 | 54 | AY.4 | 0.000084 |
S | 1264 | V1264L | Gtg | Ttg | 50 | 53 | B.1.1 | 0.000907 |
S | 1264 | V1264L | Gtg | Ctg | 3 | 53 | B.1.1 | 0.000054 |
S | 1264 | V1264V | gtG | gtT | 53 | 53 | B.1.1.519 | 0.002105 |
S | 1264 | V1264del | GTG | --- | 53 | 53 | B.1.1.7 | 0.000047 |
S | 1264 | V1264V | gtG | gtT | 51 | 53 | B.1.243 | 0.003549 |
S | 1264 | V1264V | gtG | gtA | 2 | 53 | B.1.243 | 0.000139 |
S | 1264 | V1264L | Gtg | Ttg | 52 | 52 | AY.116 | 0.014913 |
S | 1264 | V1264V | gtG | gtT | 50 | 52 | P.1 | 0.000788 |
S | 1264 | V1264V | gtG | gtA | 2 | 52 | P.1 | 0.000032 |
S | 1264 | V1264L | Gtg | Ttg | 50 | 50 | B.1.177.33 | 0.082237 |
S | 1264 | V1264V | gtG | gtT | 45 | 48 | AY.103 | 0.000279 |
S | 1264 | V1264V | gtG | gtA | 3 | 48 | AY.103 | 0.000019 |
S | 1264 | V1264L | Gtg | Ttg | 41 | 44 | B.1.160 | 0.001279 |
S | 1264 | V1264L | Gtg | Ctg | 3 | 44 | B.1.160 | 0.000094 |
S | 1264 | V1264F | GtG | TtT | 43 | 43 | AY.23 | 0.002999 |
S | 1264 | V1264V | gtG | gtT | 36 | 43 | B.1.1 | 0.000653 |
S | 1264 | V1264V | gtG | gtA | 7 | 43 | B.1.1 | 0.000127 |
S | 1264 | V1264L | Gtg | Ttg | 43 | 43 | B.1.265 | 0.054638 |
S | 1264 | V1264L | Gtg | Ttg | 43 | 43 | B.1.526 | 0.001011 |
S | 1264 | V1264A | gTg | gCg | 42 | 42 | AY.43 | 0.000186 |
S | 1264 | V1264V | gtG | gtT | 36 | 42 | B.1 | 0.00033 |
S | 1264 | V1264V | gtG | gtA | 5 | 42 | B.1 | 0.000046 |
S | 1264 | V1264V | gtG | gtC | 1 | 42 | B.1 | 0.000009 |
S | 1264 | V1264V | gtG | gtT | 41 | 42 | B.1.160 | 0.001279 |
S | 1264 | V1264V | gtG | gtA | 1 | 42 | B.1.160 | 0.000031 |
S | 1264 | V1264L | Gtg | Ttg | 37 | 41 | B.1.177 | 0.000487 |
S | 1264 | V1264L | Gtg | Ctg | 4 | 41 | B.1.177 | 0.000053 |
S | 1264 | V1264V | gtG | gtT | 37 | 40 | AY.39 | 0.000914 |
S | 1264 | V1264V | gtG | gtC | 2 | 40 | AY.39 | 0.000049 |
S | 1264 | V1264V | gtG | gtA | 1 | 40 | AY.39 | 0.000025 |
S | 1264 | V1264V | gtG | gtT | 40 | 40 | AY.46.5 | 0.007937 |
S | 1264 | V1264L | Gtg | Ttg | 38 | 39 | AY.46.2 | 0.024142 |
S | 1264 | V1264L | GtG | TtA | 1 | 39 | AY.46.2 | 0.000635 |
S | 1264 | V1264V | gtG | gtT | 39 | 39 | AY.53 | 0.011213 |
S | 1264 | V1264L | Gtg | Ttg | 36 | 37 | AY.47 | 0.00112 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 37 | AY.47 | 0.000031 |
S | 1264 | V1264L | Gtg | Ttg | 36 | 36 | AY.99.2 | 0.003318 |
S | 1264 | V1264V | gtG | gtT | 36 | 36 | B.1.526 | 0.000846 |
S | 1264 | V1264L | Gtg | Ttg | 35 | 35 | B.1.1.434 | 0.012199 |
S | 1264 | V1264L | Gtg | Ttg | 35 | 35 | B.1.427 | 0.001767 |
S | 1264 | V1264L | Gtg | Ttg | 34 | 34 | C.36 | 0.030965 |
S | 1264 | V1264L | Gtg | Ttg | 32 | 32 | AY.120.2 | 0.041131 |
S | 1264 | V1264L | Gtg | Ttg | 32 | 32 | AY.5 | 0.000661 |
S | 1264 | V1264V | gtG | gtT | 31 | 31 | B.1.258.17 | 0.003223 |
S | 1264 | V1264L | Gtg | Ttg | 31 | 31 | R.1 | 0.00279 |
S | 1264 | V1264L | Gtg | Ttg | 30 | 30 | AY.24 | 0.012931 |
S | 1264 | V1264L | Gtg | Ttg | 30 | 30 | AY.29 | 0.000473 |
S | 1264 | V1264L | Gtg | Ttg | 30 | 30 | AY.46.5 | 0.005952 |
S | 1264 | V1264L | Gtg | Ttg | 30 | 30 | AY.98 | 0.00237 |
S | 1264 | V1264V | gtG | gtT | 30 | 30 | R.1 | 0.0027 |
S | 1264 | V1264L | Gtg | Ttg | 26 | 28 | AY.119 | 0.000918 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 28 | AY.119 | 0.000071 |
S | 1264 | V1264L | Gtg | Ttg | 28 | 28 | AY.42 | 0.001126 |
S | 1264 | V1264V | gtG | gtA | 28 | 28 | AY.46.6 | 0.002022 |
S | 1264 | V1264L | Gtg | Ttg | 27 | 27 | AY.111 | 0.004945 |
S | 1264 | V1264L | Gtg | Ttg | 25 | 25 | AY.105 | 0.016077 |
S | 1264 | V1264L | Gtg | Ttg | 25 | 25 | B.1.351 | 0.000743 |
S | 1264 | V1264V | gtG | gtT | 24 | 24 | AY.120 | 0.000892 |
S | 1264 | V1264M | Gtg | Atg | 24 | 24 | AY.43 | 0.000106 |
S | 1264 | V1264L | Gtg | Ttg | 24 | 24 | AY.62 | 0.010458 |
S | 1264 | V1264M | Gtg | Atg | 24 | 24 | B.1.1.7 | 0.000021 |
S | 1264 | V1264V | gtG | gtT | 23 | 24 | B.1.427 | 0.001161 |
S | 1264 | V1264V | gtG | gtA | 1 | 24 | B.1.427 | 0.00005 |
S | 1264 | V1264E | gTg | gAg | 16 | 23 | All | 0.000003 |
S | 1264 | V1264E | gTG | gAA | 7 | 23 | All | 0.000001 |
S | 1264 | V1264L | Gtg | Ttg | 23 | 23 | C.35 | 0.017802 |
S | 1264 | V1264L | Gtg | Ttg | 23 | 23 | Q.8 | 0.003793 |
S | 1264 | V1264L | Gtg | Ttg | 21 | 22 | AY.117 | 0.001775 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 22 | AY.117 | 0.000085 |
S | 1264 | V1264L | Gtg | Ttg | 22 | 22 | B | 0.002812 |
S | 1264 | V1264V | gtG | gtT | 20 | 20 | AY.4.2 | 0.000434 |
S | 1264 | V1264L | Gtg | Ttg | 20 | 20 | B.1.243 | 0.001392 |
S | 1264 | V1264M | Gtg | Atg | 20 | 20 | B.1.429 | 0.000471 |
S | 1264 | V1264A | gTg | gCg | 20 | 20 | B.1.617.2 | 0.000075 |
S | 1264 | V1264V | gtG | gtT | 20 | 20 | B.1.621 | 0.00177 |
S | 1264 | V1264V | gtG | gtT | 20 | 20 | L.4 | 1 |
S | 1264 | V1264L | Gtg | Ttg | 19 | 19 | AY.120 | 0.000706 |
S | 1264 | V1264L | Gtg | Ttg | 19 | 19 | AY.13 | 0.003059 |
S | 1264 | V1264L | Gtg | Ttg | 19 | 19 | AY.36 | 0.002816 |
S | 1264 | V1264del | GTG | --- | 19 | 19 | AY.4.5 | 0.002042 |
S | 1264 | V1264L | Gtg | Ttg | 19 | 19 | B.1.1.222 | 0.003876 |
S | 1264 | V1264M | Gtg | Atg | 19 | 19 | B.1.617.2 | 0.000072 |
S | 1264 | V1264L | Gtg | Ttg | 18 | 18 | AY.100 | 0.000828 |
S | 1264 | V1264L | Gtg | Ttg | 17 | 18 | AY.20 | 0.000661 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 18 | AY.20 | 0.000039 |
S | 1264 | V1264L | Gtg | Ttg | 18 | 18 | AY.9.2 | 0.000661 |
S | 1264 | V1264M | Gtg | Atg | 18 | 18 | B.1.1.176 | 0.007909 |
S | 1264 | V1264L | Gtg | Ttg | 17 | 18 | B.1.429 | 0.0004 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 18 | B.1.429 | 0.000024 |
S | 1264 | V1264L | Gtg | Ttg | 18 | 18 | P.1.14 | 0.00086 |
S | 1264 | V1264G | gTg | gGg | 13 | 17 | All | 0.000002 |
S | 1264 | V1264G | gTG | gGA | 4 | 17 | All | 0.000001 |
S | 1264 | V1264L | Gtg | Ttg | 17 | 17 | AY.10 | 0.009009 |
S | 1264 | V1264L | Gtg | Ttg | 17 | 17 | AY.34 | 0.001648 |
S | 1264 | V1264L | Gtg | Ttg | 16 | 17 | AY.46 | 0.001665 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 17 | AY.46 | 0.000104 |
S | 1264 | V1264V | gtG | gtT | 16 | 17 | B.1.351 | 0.000476 |
S | 1264 | V1264V | gtG | gtC | 1 | 17 | B.1.351 | 0.00003 |
S | 1264 | V1264L | Gtg | Ttg | 16 | 16 | AY.46.6 | 0.001155 |
S | 1264 | V1264L | Gtg | Ttg | 16 | 16 | AY.54 | 0.001526 |
S | 1264 | V1264V | gtG | gtT | 16 | 16 | AY.86 | 0.013278 |
S | 1264 | V1264L | Gtg | Ttg | 16 | 16 | B.1.1.214 | 0.000887 |
S | 1264 | V1264L | Gtg | Ttg | 16 | 16 | B.1.1.306 | 0.007014 |
S | 1264 | V1264L | Gtg | Ttg | 16 | 16 | B.1.621 | 0.001416 |
S | 1264 | V1264V | gtG | gtT | 15 | 15 | AY.29 | 0.000237 |
S | 1264 | V1264V | gtG | gtT | 15 | 15 | B.1.221 | 0.001065 |
S | 1264 | V1264L | Gtg | Ttg | 14 | 14 | B.1.36.24 | 0.08642 |
S | 1264 | V1264L | Gtg | Ttg | 12 | 14 | C.37 | 0.001393 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 14 | C.37 | 0.000232 |
S | 1264 | V1264L | Gtg | Ttg | 13 | 13 | AY.106 | 0.004354 |
S | 1264 | V1264F | GtG | TtT | 13 | 13 | AY.26 | 0.000368 |
S | 1264 | V1264V | gtG | gtT | 12 | 13 | AY.6 | 0.000494 |
S | 1264 | V1264V | gtG | gtA | 1 | 13 | AY.6 | 0.000041 |
S | 1264 | V1264L | Gtg | Ttg | 13 | 13 | AY.73 | 0.008649 |
S | 1264 | V1264L | Gtg | Ttg | 13 | 13 | B.1.623 | 0.006974 |
S | 1264 | V1264L | Gtg | Ttg | 13 | 13 | P.2 | 0.002426 |
S | 1264 | V1264V | gtG | gtT | 12 | 12 | AY.100 | 0.000552 |
S | 1264 | V1264L | Gtg | Ttg | 12 | 12 | AY.121 | 0.001624 |
S | 1264 | V1264L | Gtg | Ttg | 12 | 12 | AY.45 | 0.00146 |
S | 1264 | V1264L | Gtg | Ttg | 12 | 12 | AY.67 | 0.005571 |
S | 1264 | V1264A | gTg | gCg | 12 | 12 | B.1.1.7 | 0.000011 |
S | 1264 | V1264V | gtG | gtT | 12 | 12 | B.1.234 | 0.001583 |
S | 1264 | V1264L | Gtg | Ttg | 12 | 12 | Q.1 | 0.001516 |
S | 1264 | V1264V | gtG | gtT | 11 | 11 | A.21 | 0.030471 |
S | 1264 | V1264K | GTg | AAg | 6 | 11 | All | 0.000001 |
S | 1264 | V1264K | GTG | AAA | 5 | 11 | All | 0.000001 |
S | 1264 | V1264R | GTg | AGg | 4 | 11 | All | 0.000001 |
S | 1264 | V1264R | GTG | AGA | 3 | 11 | All | 0.000001 |
S | 1264 | V1264R | GTg | CGg | 2 | 11 | All | 0 |
S | 1264 | V1264R | GTG | CGA | 2 | 11 | All | 0 |
S | 1264 | V1264A | gTg | gCg | 11 | 11 | AY.45 | 0.001339 |
S | 1264 | V1264V | gtG | gtT | 11 | 11 | AY.84 | 0.004812 |
S | 1264 | V1264V | gtG | gtT | 11 | 11 | AY.99.2 | 0.001014 |
S | 1264 | V1264del | GTG | --- | 11 | 11 | B.1.177 | 0.000145 |
S | 1264 | V1264L | Gtg | Ttg | 11 | 11 | B.1.221 | 0.000781 |
S | 1264 | V1264L | Gtg | Ttg | 11 | 11 | B.1.525 | 0.001245 |
S | 1264 | V1264V | gtG | gtT | 11 | 11 | B.1.575 | 0.003337 |
S | 1264 | V1264L | Gtg | Ttg | 11 | 11 | B.1.588 | 0.010009 |
S | 1264 | V1264I | GtG | AtA | 6 | 10 | All | 0.000001 |
S | 1264 | V1264I | GtG | AtC | 3 | 10 | All | 0.000001 |
S | 1264 | V1264I | GtG | AtT | 1 | 10 | All | 0 |
S | 1264 | V1264L | Gtg | Ttg | 10 | 10 | AY.16.1 | 0.004699 |
S | 1264 | V1264V | gtG | gtT | 10 | 10 | AY.20 | 0.000389 |
S | 1264 | V1264L | Gtg | Ttg | 9 | 10 | AY.27 | 0.000582 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 10 | AY.27 | 0.000065 |
S | 1264 | V1264L | Gtg | Ttg | 8 | 10 | AY.33 | 0.000534 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 10 | AY.33 | 0.000134 |
S | 1264 | V1264L | Gtg | Ttg | 10 | 10 | AY.52 | 0.008143 |
S | 1264 | V1264L | Gtg | Ttg | 10 | 10 | B.1.177.54 | 0.006064 |
S | 1264 | V1264V | gtG | gtT | 10 | 10 | P.1.17 | 0.001618 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | AY.119 | 0.000318 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | AY.24 | 0.003879 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | AY.4.2.1 | 0.001341 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | AY.5 | 0.000186 |
S | 1264 | V1264L | Gtg | Ttg | 9 | 9 | AY.70 | 0.001877 |
S | 1264 | V1264L | Gtg | Ttg | 9 | 9 | AY.92 | 0.002585 |
S | 1264 | V1264L | Gtg | Ttg | 9 | 9 | AY.93 | 0.002458 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | AY.98.1 | 0.000436 |
S | 1264 | V1264G | gTg | gGg | 6 | 9 | B.1 | 0.000055 |
S | 1264 | V1264G | gTG | gGA | 3 | 9 | B.1 | 0.000027 |
S | 1264 | V1264R | GTg | AGg | 3 | 9 | B.1 | 0.000027 |
S | 1264 | V1264R | GTG | AGA | 2 | 9 | B.1 | 0.000018 |
S | 1264 | V1264R | GTG | CGA | 2 | 9 | B.1 | 0.000018 |
S | 1264 | V1264R | GTg | CGg | 2 | 9 | B.1 | 0.000018 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | B.1.1.186 | 0.030928 |
S | 1264 | V1264del | GTG | --- | 9 | 9 | B.1.1.189 | 0.013616 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | B.1.1.28 | 0.002801 |
S | 1264 | V1264F | GtG | TtT | 9 | 9 | B.1.1.298 | 0.007759 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | B.1.409 | 0.007031 |
S | 1264 | V1264L | Gtg | Ttg | 8 | 9 | B.1.466.2 | 0.00313 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 9 | B.1.466.2 | 0.000391 |
S | 1264 | V1264L | Gtg | Ttg | 8 | 9 | B.1.582 | 0.003925 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 9 | B.1.582 | 0.000491 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | P.1.10 | 0.002425 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | P.1.2 | 0.010405 |
S | 1264 | V1264V | gtG | gtT | 9 | 9 | P.1.7 | 0.002874 |
S | 1264 | V1264S | GTg | TCg | 7 | 8 | All | 0.000001 |
S | 1264 | V1264S | GTG | TCA | 1 | 8 | All | 0 |
S | 1264 | V1264M | Gtg | Atg | 8 | 8 | AY.44 | 0.000049 |
S | 1264 | V1264V | gtG | gtT | 8 | 8 | AY.47 | 0.000249 |
S | 1264 | V1264E | gTG | gAA | 4 | 8 | B.1 | 0.000037 |
S | 1264 | V1264E | gTg | gAg | 4 | 8 | B.1 | 0.000037 |
S | 1264 | V1264V | gtG | gtT | 7 | 8 | B.1.1.222 | 0.001428 |
S | 1264 | V1264V | gtG | gtA | 1 | 8 | B.1.1.222 | 0.000204 |
S | 1264 | V1264V | gtG | gtT | 8 | 8 | B.1.1.33 | 0.003367 |
S | 1264 | V1264F | GtG | TtT | 8 | 8 | B.1.1.7 | 0.000007 |
S | 1264 | V1264L | Gtg | Ttg | 8 | 8 | B.1.400 | 0.003432 |
S | 1264 | V1264V | gtG | gtT | 8 | 8 | B.1.637 | 0.000585 |
S | 1264 | V1264V | gtG | gtT | 8 | 8 | C.37 | 0.000929 |
S | 1264 | V1264V | gtG | gtT | 7 | 8 | D.2 | 0.000525 |
S | 1264 | V1264V | gtG | gtC | 1 | 8 | D.2 | 0.000075 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 7 | AY.1 | 0.001979 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 7 | AY.1 | 0.000791 |
S | 1264 | V1264V | gtG | gtT | 7 | 7 | AY.113 | 0.000997 |
S | 1264 | V1264F | GtG | TtT | 7 | 7 | AY.25 | 0.000042 |
S | 1264 | V1264L | Gtg | Ttg | 7 | 7 | AY.3.1 | 0.000597 |
S | 1264 | V1264V | gtG | gtT | 7 | 7 | AY.33 | 0.000467 |
S | 1264 | V1264L | Gtg | Ttg | 7 | 7 | AY.4.5 | 0.000752 |
S | 1264 | V1264V | gtG | gtT | 6 | 7 | AY.46 | 0.000624 |
S | 1264 | V1264V | gtG | gtA | 1 | 7 | AY.46 | 0.000104 |
S | 1264 | V1264V | gtG | gtT | 7 | 7 | AY.46.4 | 0.001152 |
S | 1264 | V1264L | Gtg | Ctg | 4 | 7 | AY.84 | 0.00175 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 7 | AY.84 | 0.001312 |
S | 1264 | V1264M | Gtg | Atg | 7 | 7 | B.1 | 0.000064 |
S | 1264 | V1264A | gTg | gCg | 6 | 7 | B.1 | 0.000055 |
S | 1264 | V1264A | gTG | gCT | 1 | 7 | B.1 | 0.000009 |
S | 1264 | V1264L | Gtg | Ttg | 7 | 7 | B.1.1.157 | 0.006393 |
S | 1264 | V1264M | Gtg | Atg | 7 | 7 | B.1.1.192 | 0.016166 |
S | 1264 | V1264L | Gtg | Ttg | 7 | 7 | B.1.1.28 | 0.002179 |
S | 1264 | V1264V | gtG | gtT | 7 | 7 | B.1.1.306 | 0.003069 |
S | 1264 | V1264E | gTg | gAg | 4 | 7 | B.1.1.7 | 0.000004 |
S | 1264 | V1264E | gTG | gAA | 3 | 7 | B.1.1.7 | 0.000003 |
S | 1264 | V1264V | gtG | gtT | 7 | 7 | B.1.206 | 0.00571 |
S | 1264 | V1264L | Gtg | Ttg | 7 | 7 | B.1.469 | 0.025271 |
S | 1264 | V1264L | Gtg | Ttg | 7 | 7 | B.1.540 | 0.067961 |
S | 1264 | V1264L | Gtg | Ttg | 7 | 7 | B.1.637 | 0.000512 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | A.23.1 | 0.004225 |
S | 1264 | V1264A | gTg | gCg | 6 | 6 | AY.102 | 0.000159 |
S | 1264 | V1264A | gTg | gCg | 6 | 6 | AY.103 | 0.000037 |
S | 1264 | V1264V | gtG | gtT | 6 | 6 | AY.13 | 0.000966 |
S | 1264 | V1264V | gtG | gtT | 6 | 6 | AY.14 | 0.000528 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | AY.19 | 0.006842 |
S | 1264 | V1264M | Gtg | Atg | 6 | 6 | AY.20 | 0.000233 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | AY.34.1 | 0.00306 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | AY.4.2.1 | 0.000894 |
S | 1264 | V1264V | gtG | gtT | 5 | 6 | AY.45 | 0.000608 |
S | 1264 | V1264V | gtG | gtC | 1 | 6 | AY.45 | 0.000122 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | AY.59 | 0.003178 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | AY.64 | 0.003571 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | AY.68 | 0.001642 |
S | 1264 | V1264F | GtG | TtT | 6 | 6 | B.1 | 0.000055 |
S | 1264 | V1264K | GTG | AAA | 3 | 6 | B.1 | 0.000027 |
S | 1264 | V1264K | GTg | AAg | 3 | 6 | B.1 | 0.000027 |
S | 1264 | V1264L | Gtg | Ctg | 3 | 6 | B.1.1.25 | 0.001706 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 6 | B.1.1.25 | 0.001706 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 6 | B.1.1.519 | 0.000159 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 6 | B.1.1.519 | 0.000079 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | B.1.1.70 | 0.002046 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | B.1.214.2 | 0.003597 |
S | 1264 | V1264V | gtG | gtT | 6 | 6 | B.1.240 | 0.001293 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | B.1.351.3 | 0.005259 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | B.1.398 | 0.017857 |
S | 1264 | V1264L | Gtg | Ttg | 6 | 6 | B.1.471 | 0.016393 |
S | 1264 | V1264V | gtG | gtT | 6 | 6 | B.40 | 0.002186 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 5 | A.2.5 | 0.001996 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 5 | A.2.5 | 0.000499 |
S | 1264 | V1264X | GTG | TAA | 2 | 5 | All | 0 |
S | 1264 | V1264X | GTg | TAg | 2 | 5 | All | 0 |
S | 1264 | V1264X | GTG | TGA | 1 | 5 | All | 0 |
S | 1264 | V1264del | GTG | --- | 5 | 5 | AY.103 | 0.000031 |
S | 1264 | V1264L | Gtg | Ctg | 3 | 5 | AY.109 | 0.002219 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 5 | AY.109 | 0.001479 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | AY.14 | 0.00044 |
S | 1264 | V1264V | gtG | gtT | 5 | 5 | AY.23 | 0.000349 |
S | 1264 | V1264del | GTG | --- | 5 | 5 | AY.25 | 0.00003 |
S | 1264 | V1264M | Gtg | Atg | 5 | 5 | AY.25 | 0.00003 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | AY.39.1 | 0.000198 |
S | 1264 | V1264del | GTG | --- | 5 | 5 | AY.4 | 0.000008 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | AY.4.3 | 0.004209 |
S | 1264 | V1264V | gtG | gtT | 5 | 5 | AY.42 | 0.000201 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | AY.46.3 | 0.004669 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | AY.74 | 0.000578 |
S | 1264 | V1264I | GtG | AtA | 3 | 5 | B.1 | 0.000027 |
S | 1264 | V1264I | GtG | AtT | 1 | 5 | B.1 | 0.000009 |
S | 1264 | V1264I | GtG | AtC | 1 | 5 | B.1 | 0.000009 |
S | 1264 | V1264V | gtG | gtT | 5 | 5 | B.1.1.25 | 0.002843 |
S | 1264 | V1264V | gtG | gtT | 5 | 5 | B.1.1.291 | 0.003712 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | B.1.1.301 | 0.005896 |
S | 1264 | V1264V | gtG | gtT | 5 | 5 | B.1.1.50 | 0.003394 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 5 | B.1.1.50 | 0.002716 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 5 | B.1.1.50 | 0.000679 |
S | 1264 | V1264V | gtG | gtT | 5 | 5 | B.1.177.11 | 0.008489 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 5 | B.1.416 | 0.005076 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 5 | B.1.416 | 0.001269 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | B.1.448 | 0.013123 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | B.1.478 | 0.058824 |
S | 1264 | V1264L | Gtg | Ctg | 4 | 5 | B.1.577 | 0.002749 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 5 | B.1.577 | 0.000687 |
S | 1264 | V1264V | gtG | gtT | 3 | 5 | B.1.596 | 0.000261 |
S | 1264 | V1264V | gtG | gtC | 2 | 5 | B.1.596 | 0.000174 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | B.23 | 0.01462 |
S | 1264 | V1264V | gtG | gtT | 5 | 5 | C.23 | 0.02907 |
S | 1264 | V1264F | GtG | TtT | 5 | 5 | D.2 | 0.000375 |
S | 1264 | V1264L | Gtg | Ttg | 5 | 5 | N.5 | 0.008834 |
S | 1264 | V1264A | gTg | gCg | 5 | 5 | P.1 | 0.000079 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 5 | P.1.12 | 0.001452 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 5 | P.1.12 | 0.000968 |
S | 1264 | V1264V | gtG | gtT | 4 | 4 | AD.2 | 0.000876 |
S | 1264 | V1264D | gTG | gAT | 3 | 4 | All | 0.000001 |
S | 1264 | V1264del1 | Gtg | -tg | 3 | 4 | All | 0.000001 |
S | 1264 | V1264Q | GTg | CAg | 2 | 4 | All | 0 |
S | 1264 | V1264Q | GTG | CAA | 2 | 4 | All | 0 |
S | 1264 | V1264del1 | gTg | g-g | 1 | 4 | All | 0 |
S | 1264 | V1264D | gTG | gAC | 1 | 4 | All | 0 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | AY.108 | 0.00441 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | AY.114 | 0.000924 |
S | 1264 | V1264V | gtG | gtT | 4 | 4 | AY.118 | 0.000251 |
S | 1264 | V1264S | GTg | TCg | 4 | 4 | AY.23 | 0.000279 |
S | 1264 | V1264V | gtG | gtT | 4 | 4 | AY.34.1 | 0.00204 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | AY.37 | 0.001264 |
S | 1264 | V1264M | Gtg | Atg | 4 | 4 | AY.4 | 0.000006 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 4 | AY.40 | 0.002893 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 4 | AY.40 | 0.000964 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | AY.5.1 | 0.015038 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 4 | AY.5.4 | 0.00083 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 4 | AY.5.4 | 0.000277 |
S | 1264 | V1264V | gtG | gtT | 4 | 4 | AY.58 | 0.00363 |
S | 1264 | V1264V | gtG | gtT | 4 | 4 | AY.61 | 0.000419 |
S | 1264 | V1264V | gtG | gtT | 4 | 4 | AY.7.1 | 0.000451 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | AY.88 | 0.003537 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | AY.9.1 | 0.000335 |
S | 1264 | V1264Q | GTg | CAg | 2 | 4 | B.1 | 0.000018 |
S | 1264 | V1264Q | GTG | CAA | 2 | 4 | B.1 | 0.000018 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | B.1.1.33 | 0.001684 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | B.1.1.5 | 0.033333 |
S | 1264 | V1264F | GtG | TtT | 4 | 4 | B.1.1.519 | 0.000159 |
S | 1264 | V1264X | GTg | TAg | 2 | 4 | B.1.1.7 | 0.000002 |
S | 1264 | V1264X | GTG | TAA | 2 | 4 | B.1.1.7 | 0.000002 |
S | 1264 | V1264K | GTg | AAg | 2 | 4 | B.1.1.7 | 0.000002 |
S | 1264 | V1264K | GTG | AAA | 2 | 4 | B.1.1.7 | 0.000002 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 4 | B.1.177.73 | 0.001699 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 4 | B.1.177.73 | 0.000566 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | B.1.177.86 | 0.000734 |
S | 1264 | V1264M | Gtg | Atg | 4 | 4 | B.1.2 | 0.000035 |
S | 1264 | V1264A | gTg | gCg | 4 | 4 | B.1.2 | 0.000035 |
S | 1264 | V1264V | gtG | gtT | 3 | 4 | B.1.36 | 0.000438 |
S | 1264 | V1264V | gtG | gtA | 1 | 4 | B.1.36 | 0.000146 |
S | 1264 | V1264V | gtG | gtT | 4 | 4 | B.1.438.1 | 0.000429 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | B.1.470 | 0.005618 |
S | 1264 | V1264M | Gtg | Atg | 4 | 4 | B.1.525 | 0.000453 |
S | 1264 | V1264L | Gtg | Ttg | 4 | 4 | B.1.575.1 | 0.009756 |
S | 1264 | V1264del | GTG | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 4 | P.1.16 | 0.000748 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 4 | P.1.16 | 0.000748 |
S | 1264 | V1264V | gtG | gtT | 4 | 4 | P.1.8 | 0.019139 |
S | 1264 | V1264T | GTG | ACT | 2 | 3 | All | 0 |
S | 1264 | V1264T | GTg | ACg | 1 | 3 | All | 0 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.107 | 0.001398 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | AY.109 | 0.002219 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | AY.110 | 0.000338 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.110 | 0.000338 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | AY.121 | 0.000406 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | AY.16 | 0.001139 |
S | 1264 | V1264A | gTg | gCg | 3 | 3 | AY.25 | 0.000018 |
S | 1264 | V1264M | Gtg | Atg | 3 | 3 | AY.29 | 0.000047 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.38 | 0.001498 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.4.4 | 0.001227 |
S | 1264 | V1264A | gTg | gCg | 3 | 3 | AY.47 | 0.000093 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.48 | 0.001395 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.49 | 0.009585 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.5.3 | 0.001012 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.55 | 0.002752 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.58 | 0.002722 |
S | 1264 | V1264M | Gtg | Atg | 3 | 3 | AY.66 | 0.003209 |
S | 1264 | V1264A | gTg | gCg | 3 | 3 | AY.7.1 | 0.000338 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AY.78 | 0.004622 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | AY.9.2 | 0.00011 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 3 | AY.91 | 0.001461 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 3 | AY.91 | 0.00073 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | AY.99 | 0.003148 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | AZ.2 | 0.002463 |
S | 1264 | V1264M | Gtg | Atg | 3 | 3 | B.1.1 | 0.000054 |
S | 1264 | V1264A | gTg | gCg | 3 | 3 | B.1.1 | 0.000054 |
S | 1264 | V1264del | GTG | --- | 3 | 3 | B.1.1 | 0.000054 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | B.1.1.1 | 0.00098 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | B.1.1.216 | 0.002671 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | B.1.1.318 | 0.000905 |
S | 1264 | V1264V | gtG | gtT | 2 | 3 | B.1.1.326 | 0.003521 |
S | 1264 | V1264V | gtG | gtA | 1 | 3 | B.1.1.326 | 0.001761 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | B.1.1.432 | 0.003797 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | B.1.1.521 | 0.016043 |
S | 1264 | V1264G | gTg | gGg | 2 | 3 | B.1.1.7 | 0.000002 |
S | 1264 | V1264I | GtG | AtA | 2 | 3 | B.1.1.7 | 0.000002 |
S | 1264 | V1264G | gTG | gGA | 1 | 3 | B.1.1.7 | 0.000001 |
S | 1264 | V1264I | GtG | AtC | 1 | 3 | B.1.1.7 | 0.000001 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | B.1.1.77 | 0.125 |
S | 1264 | V1264del | GTG | --- | 3 | 3 | B.1.177.4 | 0.000633 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 3 | B.1.177.60 | 0.000437 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 3 | B.1.177.60 | 0.000218 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | B.1.177.81 | 0.000568 |
S | 1264 | V1264F | GtG | TtT | 3 | 3 | B.1.239 | 0.003663 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | B.1.351.2 | 0.000908 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | B.1.36.26 | 0.008571 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | B.1.36.29 | 0.001552 |
S | 1264 | V1264V | gtG | gtA | 3 | 3 | B.1.36.31 | 0.005254 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | B.1.428 | 0.003061 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | B.1.429 | 0.000071 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 3 | B.1.438.1 | 0.000215 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 3 | B.1.438.1 | 0.000107 |
S | 1264 | V1264F | GtG | TtT | 3 | 3 | B.1.617.2 | 0.000011 |
S | 1264 | V1264M | Gtg | Atg | 3 | 3 | B.1.621 | 0.000266 |
S | 1264 | V1264V | gtG | gtC | 2 | 3 | C.36.3 | 0.001134 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 3 | C.36.3 | 0.001134 |
S | 1264 | V1264V | gtG | gtT | 1 | 3 | C.36.3 | 0.000567 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 3 | C.36.3 | 0.000567 |
S | 1264 | V1264M | Gtg | Atg | 3 | 3 | C.38 | 0.024194 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | P.1.1 | 0.000953 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | P.1.10 | 0.000808 |
S | 1264 | V1264V | gtG | gtT | 3 | 3 | P.1.15 | 0.000697 |
S | 1264 | V1264L | Gtg | Ttg | 3 | 3 | P.1.17 | 0.000485 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 3 | P.1.7 | 0.000639 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 3 | P.1.7 | 0.000319 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | A | 0.000774 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | A.23 | 0.021053 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AD.2 | 0.000438 |
S | 1264 | V1264W | GTg | TGg | 2 | 2 | All | 0 |
S | 1264 | V1264del2 | GTg | --g | 2 | 2 | All | 0 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AP.1 | 0.003003 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AU.2 | 0.004843 |
S | 1264 | V1264M | Gtg | Atg | 2 | 2 | AY.103 | 0.000012 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AY.111 | 0.000366 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.116.1 | 0.000623 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AY.117 | 0.000169 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AY.12 | 0.000632 |
S | 1264 | V1264del | GTG | --- | 2 | 2 | AY.120 | 0.000074 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.120.1 | 0.000642 |
S | 1264 | V1264V | gtG | gtT | 1 | 2 | AY.2 | 0.000356 |
S | 1264 | V1264V | gtG | gtA | 1 | 2 | AY.2 | 0.000356 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AY.28 | 0.003781 |
S | 1264 | V1264A | gTg | gCg | 2 | 2 | AY.29 | 0.000032 |
S | 1264 | V1264M | Gtg | Atg | 2 | 2 | AY.29.1 | 0.000441 |
S | 1264 | V1264M | Gtg | Atg | 2 | 2 | AY.3 | 0.00002 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AY.32 | 0.001065 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.35 | 0.000466 |
S | 1264 | V1264F | GtG | TtT | 2 | 2 | AY.4 | 0.000003 |
S | 1264 | V1264M | Gtg | Atg | 2 | 2 | AY.42 | 0.00008 |
S | 1264 | V1264A | gTg | gCg | 2 | 2 | AY.44 | 0.000012 |
S | 1264 | V1264G | gTg | gGg | 2 | 2 | AY.44 | 0.000012 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.46.4 | 0.000329 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.60 | 0.001876 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.7 | 0.000392 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.7.1 | 0.000225 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.7.2 | 0.001119 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AY.75 | 0.000112 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AY.75.1 | 0.000361 |
S | 1264 | V1264M | Gtg | Atg | 2 | 2 | AY.80 | 0.002257 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.86 | 0.00166 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | AY.89 | 0.009804 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | AY.9 | 0.000135 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B | 0.000256 |
S | 1264 | V1264del | GTG | --- | 2 | 2 | B.1 | 0.000018 |
S | 1264 | V1264D | gTG | gAC | 1 | 2 | B.1 | 0.000009 |
S | 1264 | V1264D | gTG | gAT | 1 | 2 | B.1 | 0.000009 |
S | 1264 | V1264T | GTg | ACg | 1 | 2 | B.1 | 0.000009 |
S | 1264 | V1264T | GTG | ACT | 1 | 2 | B.1 | 0.000009 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.1.10 | 0.00223 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.1.232 | 0.00363 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.1.283 | 0.046512 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.1.1.409 | 0.005666 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.1.1.513 | 0.024691 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.1.63 | 0.000772 |
S | 1264 | V1264R | GTG | AGA | 1 | 2 | B.1.1.7 | 0.000001 |
S | 1264 | V1264R | GTg | AGg | 1 | 2 | B.1.1.7 | 0.000001 |
S | 1264 | V1264L | Gtg | Ctg | 2 | 2 | B.1.1.71 | 0.012121 |
S | 1264 | V1264F | GtG | TtT | 2 | 2 | B.1.177 | 0.000026 |
S | 1264 | V1264del | GTG | --- | 2 | 2 | B.1.177.16 | 0.001329 |
S | 1264 | V1264del | GTG | --- | 2 | 2 | B.1.177.54 | 0.001213 |
S | 1264 | V1264M | Gtg | Atg | 2 | 2 | B.1.177.62 | 0.002384 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.177.77 | 0.001452 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.177.82 | 0.000955 |
S | 1264 | V1264A | gTg | gCg | 2 | 2 | B.1.221 | 0.000142 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.1.258.14 | 0.001961 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.313 | 0.013158 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.346 | 0.002621 |
S | 1264 | V1264M | Gtg | Atg | 2 | 2 | B.1.351 | 0.000059 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.36.17 | 0.000988 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.36.38 | 0.003284 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.393 | 0.057143 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.1.396 | 0.001411 |
S | 1264 | V1264F | GtG | TtT | 2 | 2 | B.1.429 | 0.000047 |
S | 1264 | V1264E | gTg | gAg | 2 | 2 | B.1.429 | 0.000047 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.517 | 0.000854 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.1.595 | 0.000522 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.596 | 0.000174 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.602 | 0.013072 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.1.609 | 0.000959 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.1.617.1 | 0.000258 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.1.620 | 0.001892 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.1.628 | 0.000705 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | B.3 | 0.001661 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | B.6.6 | 0.001778 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | C.18 | 0.005181 |
S | 1264 | V1264L | Gtg | Ttg | 2 | 2 | C.40 | 0.055556 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 2 | D.3 | 0.005917 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 2 | D.3 | 0.005917 |
S | 1264 | V1264F | GtG | TtT | 2 | 2 | P.1 | 0.000032 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 2 | P.1.1 | 0.000318 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 2 | P.1.1 | 0.000318 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | P.2 | 0.000373 |
S | 1264 | V1264V | gtG | gtT | 2 | 2 | Q.8 | 0.00033 |
S | 1264 | V1264del | GTG | --- | 2 | 2 | U.3 | 0.007722 |
S | 1264 | V1264W | GTg | TGg | 1 | 1 | 0.055556 | |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | 0.055556 | |
S | 1264 | V1264S | GTg | TCg | 1 | 1 | 0.055556 | |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | A | 0.000387 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 1 | A.18 | 0.05 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | A.2.3 | 0.004739 |
S | 1264 | V1264V | gtG | gtA | 1 | 1 | A.2.5.1 | 0.004808 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AE.7 | 0.083333 |
S | 1264 | V1264N | GTG | AAC | 1 | 1 | All | 0 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | AY.100 | 0.000046 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | AY.102 | 0.000027 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | AY.111 | 0.000183 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | AY.116 | 0.000287 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.116.1 | 0.000311 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | AY.118 | 0.000063 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | AY.119 | 0.000035 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.12 | 0.000316 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | AY.16.1 | 0.00047 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | AY.16.1 | 0.00047 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.17 | 0.008197 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | AY.19 | 0.00114 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.2 | 0.000356 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.22 | 0.002092 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | AY.24 | 0.000431 |
S | 1264 | V1264del2 | GTg | --g | 1 | 1 | AY.25 | 0.000006 |
S | 1264 | V1264S | GTg | TCg | 1 | 1 | AY.26 | 0.000028 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | AY.29 | 0.000016 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | AY.3 | 0.00001 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | AY.3 | 0.00001 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.3.1 | 0.000085 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.30 | 0.000396 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.32 | 0.000532 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | AY.33 | 0.000067 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.36 | 0.000148 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.37 | 0.000316 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | AY.39 | 0.000025 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | AY.39 | 0.000025 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.39.1 | 0.00004 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.39.1.1 | 0.000725 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.41 | 0.000294 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | AY.42 | 0.00004 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | AY.42 | 0.00004 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | AY.43 | 0.000004 |
S | 1264 | V1264G | gTg | gGg | 1 | 1 | AY.43 | 0.000004 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | AY.43 | 0.000004 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | AY.44 | 0.000006 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | AY.45 | 0.000122 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | AY.46 | 0.000104 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.46.1 | 0.001027 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.46.1 | 0.001027 |
S | 1264 | V1264S | GTG | TCA | 1 | 1 | AY.46.2 | 0.000635 |
S | 1264 | V1264V | gtG | gtA | 1 | 1 | AY.46.2 | 0.000635 |
S | 1264 | V1264A | gTG | gCA | 1 | 1 | AY.46.2 | 0.000635 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | AY.47 | 0.000031 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.49 | 0.003195 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | AY.5 | 0.000021 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | AY.5.3 | 0.000337 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.5.3 | 0.000337 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.50 | 0.000799 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.53 | 0.000288 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.57 | 0.000656 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | AY.60 | 0.000938 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.62 | 0.000436 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.63 | 0.000387 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | AY.65 | 0.000533 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.65 | 0.000533 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.69 | 0.000187 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.7 | 0.000196 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | AY.7.2 | 0.000559 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.70 | 0.000209 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.72 | 0.001361 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.77 | 0.001127 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.78 | 0.001541 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.8 | 0.000606 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.8 | 0.000606 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.81 | 0.001992 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.85 | 0.000427 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 1 | AY.85 | 0.000427 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.87 | 0.000833 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.9.2.1 | 0.001976 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.90 | 0.000684 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.92 | 0.000287 |
S | 1264 | V1264E | gTg | gAg | 1 | 1 | AY.93 | 0.000273 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | AY.97 | 0.001701 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | AY.98 | 0.000079 |
S | 1264 | V1264N | GTG | AAC | 1 | 1 | B.1 | 0.000009 |
S | 1264 | V1264W | GTg | TGg | 1 | 1 | B.1 | 0.000009 |
S | 1264 | V1264del1 | Gtg | -tg | 1 | 1 | B.1 | 0.000009 |
S | 1264 | V1264D | gTG | gAT | 1 | 1 | B.1.1 | 0.000018 |
S | 1264 | V1264K | GTg | AAg | 1 | 1 | B.1.1 | 0.000018 |
S | 1264 | V1264E | gTg | gAg | 1 | 1 | B.1.1 | 0.000018 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.1 | 0.000327 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.1.117 | 0.009709 |
S | 1264 | V1264X | GTG | TGA | 1 | 1 | B.1.1.137 | 0.0125 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.159 | 0.004673 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.170 | 0.001247 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.174 | 0.003378 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.189 | 0.001513 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.1.207 | 0.001182 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1264 | V1264D | gTG | gAT | 1 | 1 | B.1.1.265 | 0.003155 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.270 | 0.010309 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.277 | 0.000759 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.279 | 0.001121 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.1.28 | 0.000311 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.284 | 0.000107 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.291 | 0.000742 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.299 | 0.012195 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.1.301 | 0.001179 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.302 | 0.002075 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.1.312 | 0.001912 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.317 | 0.000412 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.1.33 | 0.000421 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.1.333 | 0.001076 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.348 | 0.000796 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.1.366 | 0.015873 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.369 | 0.000446 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.372 | 0.000689 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.1.389 | 0.006061 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.39 | 0.00051 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.1.4 | 0.002976 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.1.402 | 0.011111 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.1.406 | 0.006494 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.431 | 0.016129 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.1.434 | 0.000349 |
S | 1264 | V1264V | gtG | gtA | 1 | 1 | B.1.1.434 | 0.000349 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.46 | 0.004367 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.1.50 | 0.000679 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.515 | 0.02 |
S | 1264 | V1264del1 | gTg | g-g | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.1.528 | 0.004808 |
S | 1264 | V1264del2 | GTg | --g | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1264 | V1264del1 | Gtg | -tg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1264 | V1264E | gTg | gAg | 1 | 1 | B.1.1.70 | 0.000341 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.110.3 | 0.000718 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.111 | 0.001175 |
S | 1264 | V1264V | gtG | gtC | 1 | 1 | B.1.128 | 0.000635 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.145 | 0.052632 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.147 | 0.000756 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.158 | 0.02381 |
S | 1264 | V1264del1 | Gtg | -tg | 1 | 1 | B.1.160 | 0.000031 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.177 | 0.000013 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.177.16 | 0.000664 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.177.19 | 0.001431 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.177.23 | 0.003236 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 1 | B.1.177.27 | 0.009434 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.177.31 | 0.011494 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.177.32 | 0.00135 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.177.44 | 0.000519 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.177.46 | 0.000918 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.177.54 | 0.000606 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.177.76 | 0.002494 |
S | 1264 | V1264A | gTG | gCT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.177.85 | 0.005435 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.192 | 0.009259 |
S | 1264 | V1264T | GTG | ACT | 1 | 1 | B.1.2 | 0.000009 |
S | 1264 | V1264E | gTg | gAg | 1 | 1 | B.1.2 | 0.000009 |
S | 1264 | V1264G | gTg | gGg | 1 | 1 | B.1.2 | 0.000009 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 1 | B.1.210 | 0.002132 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.221.1 | 0.002907 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.222 | 0.001692 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | B.1.232 | 0.000537 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.232 | 0.000537 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.233 | 0.014085 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.234 | 0.000132 |
S | 1264 | V1264I | GtG | AtA | 1 | 1 | B.1.234 | 0.000132 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.239 | 0.001221 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.241 | 0.000812 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.241 | 0.000812 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.243 | 0.00007 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.247 | 0.014925 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.252 | 0.006623 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.252 | 0.006623 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.258.17 | 0.000104 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.265 | 0.001271 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.329 | 0.000608 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.335 | 0.010309 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 1264 | V1264V | gtG | gtC | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.36.17 | 0.000494 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 1 | B.1.36.27 | 0.000763 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.36.29 | 0.000517 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.36.29 | 0.000517 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.36.29 | 0.000517 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.36.8 | 0.001 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.362 | 0.001541 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.363 | 0.012987 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.367 | 0.000792 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.367 | 0.000792 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.369 | 0.000285 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.377 | 0.004566 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.389 | 0.001002 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.396 | 0.000706 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.401 | 0.008197 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.415.1 | 0.007576 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | B.1.427 | 0.00005 |
S | 1264 | V1264E | gTg | gAg | 1 | 1 | B.1.427 | 0.00005 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.428 | 0.00102 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.429 | 0.000024 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.429 | 0.000024 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.434 | 0.052632 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.452 | 0.013699 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.456 | 0.003268 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.459 | 0.004082 |
S | 1264 | V1264L | Gtg | Ctg | 1 | 1 | B.1.467 | 0.04 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.468 | 0.005714 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.473 | 0.019231 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.499 | 0.00105 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.525 | 0.000113 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | B.1.526 | 0.000024 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.526 | 0.000024 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.527 | 0.003704 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.538 | 0.008065 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.538 | 0.008065 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.564 | 0.000426 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.574 | 0.002151 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.576 | 0.000907 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | B.1.577 | 0.000687 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | B.1.596 | 0.000087 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.600 | 0.005848 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.609 | 0.000479 |
S | 1264 | V1264S | GTg | TCg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.618 | 0.004032 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.619 | 0.000871 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.619 | 0.000871 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.620 | 0.000946 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
S | 1264 | V1264F | GtG | TtT | 1 | 1 | B.1.623 | 0.000536 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.625 | 0.002353 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.627 | 0.00202 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.629 | 0.013333 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.91 | 0.002075 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.1.93 | 0.000934 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.37 | 0.028571 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.40 | 0.000364 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | B.52 | 0.010101 |
S | 1264 | V1264I | GtG | AtC | 1 | 1 | B.55 | 0.00295 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | B.6 | 0.00091 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | C.1 | 0.002392 |
S | 1264 | V1264A | gTg | gCg | 1 | 1 | C.36.3 | 0.000567 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | C.37 | 0.000116 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | D.5 | 0.004975 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | P.1 | 0.000016 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | P.1 | 0.000016 |
S | 1264 | V1264E | gTg | gAg | 1 | 1 | P.1 | 0.000016 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 1264 | V1264G | gTg | gGg | 1 | 1 | P.1.10 | 0.000269 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | P.1.12 | 0.000484 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | P.1.14 | 0.000048 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | P.1.16 | 0.000374 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | P.2 | 0.000187 |
S | 1264 | V1264V | gtG | gtT | 1 | 1 | P.4 | 0.003802 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | P.7 | 0.004367 |
S | 1264 | V1264M | Gtg | Atg | 1 | 1 | Q.1 | 0.000126 |
S | 1264 | V1264del | GTG | --- | 1 | 1 | Q.2 | 0.000613 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | Q.3 | 0.000145 |
S | 1264 | V1264L | Gtg | Ttg | 1 | 1 | W.1 | 0.008696 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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