CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1260 | D1260N | nonsyn | Gac | Aac | 2290 | 2289 | 0.999563 | 25340-25342 | |
S | 1260 | D1260N | nonsyn | GaC | AaT | 2290 | 1 | 0.000436681 | 25340-25342 | |
S | 1260 | D1260Y | nonsyn | Gac | Tac | 2265 | 2264 | 0.999559 | 25340-25342 | |
S | 1260 | D1260Y | nonsyn | GaC | TaT | 2265 | 1 | 0.000441501 | 25340-25342 | |
S | 1260 | D1260D | syn | gaC | gaT | 299 | 299 | 1 | 25340-25342 | |
S | 1260 | D1260H | nonsyn | Gac | Cac | 297 | 297 | 1 | 25340-25342 | |
S | 1260 | D1260A | nonsyn | gAc | gCc | 144 | 144 | 1 | 25340-25342 | |
S | 1260 | D1260del | del | GAC | --- | 133 | 133 | 1 | 25340-25342 | |
S | 1260 | D1260E | nonsyn | gaC | gaA | 122 | 120 | 0.983607 | 25340-25342 | |
S | 1260 | D1260E | nonsyn | gaC | gaG | 122 | 2 | 0.0163934 | 25340-25342 | |
S | 1260 | D1260G | nonsyn | gAc | gGc | 97 | 94 | 0.969072 | 25340-25342 | |
S | 1260 | D1260G | nonsyn | gAC | gGA | 97 | 1 | 0.0103093 | 25340-25342 | |
S | 1260 | D1260G | nonsyn | gAC | gGT | 97 | 1 | 0.0103093 | 25340-25342 | |
S | 1260 | D1260G | nonsyn | gAC | gGG | 97 | 1 | 0.0103093 | 25340-25342 | |
S | 1260 | D1260V | nonsyn | gAc | gTc | 10 | 7 | 0.7 | 25340-25342 | |
S | 1260 | D1260V | nonsyn | gAC | gTT | 10 | 2 | 0.2 | 25340-25342 | |
S | 1260 | D1260V | nonsyn | gAC | gTA | 10 | 1 | 0.1 | 25340-25342 | |
S | 1260 | D1260del1 | del | gaC | ga- | 9 | 7 | 0.777778 | 25340-25342 | |
S | 1260 | D1260del1 | del | GAC | -NN | 9 | 1 | 0.111111 | 25340-25342 | |
S | 1260 | D1260del1 | del | Gac | -ac | 9 | 1 | 0.111111 | 25340-25342 | |
S | 1260 | D1260del2 | del | gAC | g-- | 8 | 6 | 0.75 | 25340-25342 | |
S | 1260 | D1260del2 | del | GAc | --c | 8 | 2 | 0.25 | 25340-25342 | |
S | 1260 | D1260I | nonsyn | GAc | ATc | 1 | 1 | 1 | 25340-25342 | |
S | 1260 | D1260F | nonsyn | GAC | TTT | 1 | 1 | 1 | 25340-25342 | |
S | 1260 | D1260C | nonsyn | GAC | TGT | 1 | 1 | 1 | 25340-25342 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1260 | D1260N | Gac | Aac | 2289 | 2290 | All | 0.000438 |
S | 1260 | D1260N | GaC | AaT | 1 | 2290 | All | 0 |
S | 1260 | D1260Y | Gac | Tac | 2264 | 2265 | All | 0.000433 |
S | 1260 | D1260Y | GaC | TaT | 1 | 2265 | All | 0 |
S | 1260 | D1260N | Gac | Aac | 1363 | 1364 | B.1.526 | 0.032037 |
S | 1260 | D1260N | GaC | AaT | 1 | 1364 | B.1.526 | 0.000024 |
S | 1260 | D1260Y | Gac | Tac | 548 | 548 | AY.4 | 0.000853 |
S | 1260 | D1260Y | Gac | Tac | 482 | 482 | AY.81 | 0.960159 |
S | 1260 | D1260N | Gac | Aac | 333 | 333 | B.1.1.7 | 0.000298 |
S | 1260 | D1260D | gaC | gaT | 299 | 299 | All | 0.000057 |
S | 1260 | D1260H | Gac | Cac | 297 | 297 | All | 0.000057 |
S | 1260 | D1260Y | Gac | Tac | 209 | 209 | B.1.1.7 | 0.000187 |
S | 1260 | D1260D | gaC | gaT | 161 | 161 | B.1.1.7 | 0.000144 |
S | 1260 | D1260A | gAc | gCc | 144 | 144 | All | 0.000028 |
S | 1260 | D1260N | Gac | Aac | 135 | 135 | AY.4.2 | 0.002928 |
S | 1260 | D1260del | GAC | --- | 133 | 133 | All | 0.000025 |
S | 1260 | D1260H | Gac | Cac | 132 | 132 | B.1.632 | 0.885906 |
S | 1260 | D1260E | gaC | gaA | 120 | 122 | All | 0.000023 |
S | 1260 | D1260E | gaC | gaG | 2 | 122 | All | 0 |
S | 1260 | D1260N | Gac | Aac | 106 | 106 | B.1.160 | 0.003306 |
S | 1260 | D1260G | gAc | gGc | 94 | 97 | All | 0.000018 |
S | 1260 | D1260G | gAC | gGT | 1 | 97 | All | 0 |
S | 1260 | D1260G | gAC | gGG | 1 | 97 | All | 0 |
S | 1260 | D1260G | gAC | gGA | 1 | 97 | All | 0 |
S | 1260 | D1260Y | Gac | Tac | 79 | 79 | B.1 | 0.000724 |
S | 1260 | D1260Y | Gac | Tac | 79 | 79 | B.1.36 | 0.011526 |
S | 1260 | D1260Y | Gac | Tac | 72 | 72 | B.1.160 | 0.002246 |
S | 1260 | D1260Y | Gac | Tac | 68 | 68 | B.1.160.20 | 0.607143 |
S | 1260 | D1260A | gAc | gCc | 66 | 66 | AY.5 | 0.001363 |
S | 1260 | D1260N | Gac | Aac | 56 | 56 | AY.4 | 0.000087 |
S | 1260 | D1260del | GAC | --- | 53 | 53 | B.1.1.7 | 0.000047 |
S | 1260 | D1260Y | Gac | Tac | 48 | 48 | B.1.617.2 | 0.000181 |
S | 1260 | D1260Y | Gac | Tac | 47 | 47 | B.1.351 | 0.001397 |
S | 1260 | D1260H | Gac | Cac | 41 | 41 | B.1.258.17 | 0.004263 |
S | 1260 | D1260E | gaC | gaA | 37 | 37 | AY.4 | 0.000058 |
S | 1260 | D1260Y | Gac | Tac | 37 | 37 | AY.44 | 0.000225 |
S | 1260 | D1260Y | Gac | Tac | 34 | 34 | AY.3 | 0.000338 |
S | 1260 | D1260Y | Gac | Tac | 30 | 30 | B.1.2 | 0.000264 |
S | 1260 | D1260N | Gac | Aac | 29 | 29 | B.1 | 0.000266 |
S | 1260 | D1260A | gAc | gCc | 29 | 29 | B.1.1.7 | 0.000026 |
S | 1260 | D1260H | Gac | Cac | 28 | 28 | AY.4 | 0.000044 |
S | 1260 | D1260Y | Gac | Tac | 27 | 27 | B.1.1.214 | 0.001497 |
S | 1260 | D1260Y | Gac | Tac | 23 | 23 | AY.43 | 0.000102 |
S | 1260 | D1260Y | Gac | Tac | 21 | 21 | AY.103 | 0.00013 |
S | 1260 | D1260del | GAC | --- | 21 | 21 | AY.4.5 | 0.002257 |
S | 1260 | D1260N | Gac | Aac | 20 | 20 | AY.25 | 0.00012 |
S | 1260 | D1260Y | Gac | Tac | 20 | 20 | B.1.1 | 0.000363 |
S | 1260 | D1260Y | Gac | Tac | 19 | 19 | AY.29 | 0.0003 |
S | 1260 | D1260Y | Gac | Tac | 19 | 19 | AY.75 | 0.001064 |
S | 1260 | D1260Y | Gac | Tac | 19 | 19 | B.1.206 | 0.015498 |
S | 1260 | D1260Y | Gac | Tac | 19 | 19 | P.1.14 | 0.000908 |
S | 1260 | D1260Y | Gac | Tac | 17 | 17 | B.1.1.57 | 0.195402 |
S | 1260 | D1260D | gaC | gaT | 17 | 17 | B.1.2 | 0.00015 |
S | 1260 | D1260N | Gac | Aac | 17 | 17 | B.1.596 | 0.001481 |
S | 1260 | D1260Y | Gac | Tac | 16 | 16 | AY.4.2 | 0.000347 |
S | 1260 | D1260Y | Gac | Tac | 16 | 16 | B.1.177 | 0.000211 |
S | 1260 | D1260N | Gac | Aac | 16 | 16 | B.1.617.2 | 0.00006 |
S | 1260 | D1260N | Gac | Aac | 15 | 15 | B.1.1.371 | 0.15625 |
S | 1260 | D1260H | Gac | Cac | 15 | 15 | B.1.1.7 | 0.000013 |
S | 1260 | D1260D | gaC | gaT | 15 | 15 | P.1.4 | 0.014648 |
S | 1260 | D1260N | Gac | Aac | 14 | 14 | A.23.1 | 0.009859 |
S | 1260 | D1260D | gaC | gaT | 14 | 14 | AY.4 | 0.000022 |
S | 1260 | D1260A | gAc | gCc | 14 | 14 | B.1.1.519 | 0.000556 |
S | 1260 | D1260N | Gac | Aac | 14 | 14 | B.1.36 | 0.002043 |
S | 1260 | D1260G | gAc | gGc | 14 | 14 | B.1.617.2 | 0.000053 |
S | 1260 | D1260Y | Gac | Tac | 13 | 13 | B.1.369 | 0.003708 |
S | 1260 | D1260Y | Gac | Tac | 13 | 13 | B.1.427 | 0.000656 |
S | 1260 | D1260Y | Gac | Tac | 12 | 12 | AY.25 | 0.000072 |
S | 1260 | D1260H | Gac | Cac | 12 | 12 | AY.43 | 0.000053 |
S | 1260 | D1260G | gAc | gGc | 12 | 12 | AY.43 | 0.000053 |
S | 1260 | D1260N | Gac | Aac | 12 | 12 | B.1.1 | 0.000218 |
S | 1260 | D1260E | gaC | gaA | 12 | 12 | B.1.1.7 | 0.000011 |
S | 1260 | D1260Y | Gac | Tac | 11 | 11 | P.1 | 0.000173 |
S | 1260 | D1260V | gAc | gTc | 7 | 10 | All | 0.000001 |
S | 1260 | D1260V | gAC | gTT | 2 | 10 | All | 0 |
S | 1260 | D1260V | gAC | gTA | 1 | 10 | All | 0 |
S | 1260 | D1260N | Gac | Aac | 10 | 10 | AY.81 | 0.01992 |
S | 1260 | D1260Y | Gac | Tac | 10 | 10 | B.1.1.244 | 0.153846 |
S | 1260 | D1260Y | Gac | Tac | 10 | 10 | B.1.1.519 | 0.000397 |
S | 1260 | D1260del | GAC | --- | 10 | 10 | B.1.177 | 0.000132 |
S | 1260 | D1260del1 | gaC | ga- | 7 | 9 | All | 0.000001 |
S | 1260 | D1260del1 | Gac | -ac | 1 | 9 | All | 0 |
S | 1260 | D1260del1 | GAC | -NN | 1 | 9 | All | 0 |
S | 1260 | D1260Y | Gac | Tac | 9 | 9 | AM.2 | 1 |
S | 1260 | D1260N | Gac | Aac | 9 | 9 | AY.103 | 0.000056 |
S | 1260 | D1260E | gaC | gaA | 9 | 9 | B.1.2 | 0.000079 |
S | 1260 | D1260D | gaC | gaT | 9 | 9 | B.1.617.2 | 0.000034 |
S | 1260 | D1260N | Gac | Aac | 9 | 9 | P.1 | 0.000142 |
S | 1260 | D1260del2 | gAC | g-- | 6 | 8 | All | 0.000001 |
S | 1260 | D1260del2 | GAc | --c | 2 | 8 | All | 0 |
S | 1260 | D1260N | Gac | Aac | 8 | 8 | AY.43 | 0.000035 |
S | 1260 | D1260Y | Gac | Tac | 8 | 8 | AY.46.6 | 0.000578 |
S | 1260 | D1260H | Gac | Cac | 8 | 8 | AY.81 | 0.015936 |
S | 1260 | D1260N | Gac | Aac | 7 | 7 | AY.44 | 0.000043 |
S | 1260 | D1260G | gAc | gGc | 7 | 7 | AY.84 | 0.003062 |
S | 1260 | D1260H | Gac | Cac | 7 | 7 | B.1 | 0.000064 |
S | 1260 | D1260E | gaC | gaA | 7 | 7 | B.1.221 | 0.000497 |
S | 1260 | D1260N | Gac | Aac | 7 | 7 | B.1.525 | 0.000792 |
S | 1260 | D1260Y | Gac | Tac | 6 | 6 | AY.102 | 0.000159 |
S | 1260 | D1260G | gAc | gGc | 6 | 6 | AY.119 | 0.000212 |
S | 1260 | D1260G | gAc | gGc | 6 | 6 | AY.25 | 0.000036 |
S | 1260 | D1260D | gaC | gaT | 6 | 6 | AY.43 | 0.000027 |
S | 1260 | D1260E | gaC | gaA | 6 | 6 | AY.44 | 0.000037 |
S | 1260 | D1260Y | Gac | Tac | 6 | 6 | AY.47 | 0.000187 |
S | 1260 | D1260Y | Gac | Tac | 6 | 6 | AY.9.2 | 0.00022 |
S | 1260 | D1260H | Gac | Cac | 6 | 6 | B.1.177.73 | 0.003398 |
S | 1260 | D1260N | Gac | Aac | 6 | 6 | B.1.2 | 0.000053 |
S | 1260 | D1260N | Gac | Aac | 6 | 6 | B.1.243 | 0.000418 |
S | 1260 | D1260Y | Gac | Tac | 6 | 6 | B.1.258 | 0.000399 |
S | 1260 | D1260N | Gac | Aac | 6 | 6 | B.1.427 | 0.000303 |
S | 1260 | D1260Y | Gac | Tac | 6 | 6 | B.1.470 | 0.008427 |
S | 1260 | D1260Y | Gac | Tac | 6 | 6 | P.1.7 | 0.001916 |
S | 1260 | D1260G | gAc | gGc | 5 | 5 | AY.102 | 0.000133 |
S | 1260 | D1260H | Gac | Cac | 5 | 5 | AY.117 | 0.000423 |
S | 1260 | D1260N | Gac | Aac | 5 | 5 | AY.23 | 0.000349 |
S | 1260 | D1260A | gAc | gCc | 5 | 5 | AY.25 | 0.00003 |
S | 1260 | D1260Y | Gac | Tac | 5 | 5 | AY.33 | 0.000334 |
S | 1260 | D1260G | gAc | gGc | 5 | 5 | AY.39 | 0.000124 |
S | 1260 | D1260A | gAc | gCc | 5 | 5 | AY.43 | 0.000022 |
S | 1260 | D1260G | gAc | gGc | 5 | 5 | B.1 | 0.000046 |
S | 1260 | D1260Y | Gac | Tac | 5 | 5 | B.1.1.432 | 0.006329 |
S | 1260 | D1260G | gAc | gGc | 5 | 5 | B.1.1.7 | 0.000004 |
S | 1260 | D1260D | gaC | gaT | 5 | 5 | B.1.234 | 0.00066 |
S | 1260 | D1260Y | Gac | Tac | 5 | 5 | B.1.36.29 | 0.002587 |
S | 1260 | D1260Y | Gac | Tac | 5 | 5 | B.1.397 | 0.024272 |
S | 1260 | D1260Y | Gac | Tac | 5 | 5 | B.1.617.1 | 0.000645 |
S | 1260 | D1260H | Gac | Cac | 5 | 5 | B.1.621 | 0.000443 |
S | 1260 | D1260N | Gac | Aac | 4 | 4 | A.1 | 0.001127 |
S | 1260 | D1260D | gaC | gaT | 4 | 4 | AY.10 | 0.00212 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | AY.100 | 0.000184 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | AY.117 | 0.000338 |
S | 1260 | D1260G | gAc | gGc | 4 | 4 | AY.120 | 0.000149 |
S | 1260 | D1260E | gaC | gaA | 4 | 4 | AY.14 | 0.000352 |
S | 1260 | D1260D | gaC | gaT | 4 | 4 | AY.29 | 0.000063 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | AY.34 | 0.000388 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | AY.45 | 0.000487 |
S | 1260 | D1260N | Gac | Aac | 4 | 4 | AY.47 | 0.000124 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | AY.5 | 0.000083 |
S | 1260 | D1260D | gaC | gaT | 4 | 4 | AY.69 | 0.000747 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | B | 0.000511 |
S | 1260 | D1260E | gaC | gaA | 4 | 4 | B.1 | 0.000037 |
S | 1260 | D1260D | gaC | gaT | 4 | 4 | B.1 | 0.000037 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | B.1.1.28 | 0.001245 |
S | 1260 | D1260N | Gac | Aac | 4 | 4 | B.1.1.312 | 0.007648 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | B.1.1.37 | 0.000771 |
S | 1260 | D1260del2 | gAC | g-- | 3 | 4 | B.1.1.7 | 0.000003 |
S | 1260 | D1260del2 | GAc | --c | 1 | 4 | B.1.1.7 | 0.000001 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | B.1.416.1 | 0.00625 |
S | 1260 | D1260E | gaC | gaA | 4 | 4 | B.1.429 | 0.000094 |
S | 1260 | D1260D | gaC | gaT | 4 | 4 | B.1.596 | 0.000349 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | B.1.621.1 | 0.002023 |
S | 1260 | D1260Y | Gac | Tac | 4 | 4 | B.1.623 | 0.002146 |
S | 1260 | D1260H | Gac | Cac | 4 | 4 | C.36.3 | 0.002269 |
S | 1260 | D1260V | gAC | gTA | 1 | 3 | 0.055556 | |
S | 1260 | D1260V | gAc | gTc | 1 | 3 | 0.055556 | |
S | 1260 | D1260V | gAC | gTT | 1 | 3 | 0.055556 | |
S | 1260 | D1260E | gaC | gaA | 3 | 3 | AY.102 | 0.00008 |
S | 1260 | D1260A | gAc | gCc | 3 | 3 | AY.103 | 0.000019 |
S | 1260 | D1260N | Gac | Aac | 3 | 3 | AY.119 | 0.000106 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | AY.16.1 | 0.00141 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | AY.29.1 | 0.000662 |
S | 1260 | D1260N | Gac | Aac | 3 | 3 | AY.3 | 0.00003 |
S | 1260 | D1260N | Gac | Aac | 3 | 3 | AY.35 | 0.000699 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | AY.39 | 0.000074 |
S | 1260 | D1260G | gAc | gGc | 3 | 3 | AY.4 | 0.000005 |
S | 1260 | D1260A | gAc | gCc | 3 | 3 | AY.4 | 0.000005 |
S | 1260 | D1260G | gAc | gGc | 3 | 3 | AY.46 | 0.000312 |
S | 1260 | D1260E | gaC | gaA | 3 | 3 | B.1.1.138 | 0.018182 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | B.1.1.284 | 0.000322 |
S | 1260 | D1260del | GAC | --- | 3 | 3 | B.1.177.4 | 0.000633 |
S | 1260 | D1260E | gaC | gaA | 3 | 3 | B.1.177.57 | 0.000843 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | B.1.221 | 0.000213 |
S | 1260 | D1260G | gAc | gGc | 3 | 3 | B.1.351.2 | 0.000908 |
S | 1260 | D1260N | Gac | Aac | 3 | 3 | B.1.426 | 0.003027 |
S | 1260 | D1260N | Gac | Aac | 3 | 3 | B.1.466.2 | 0.001174 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | B.1.497 | 0.000944 |
S | 1260 | D1260E | gaC | gaA | 3 | 3 | B.1.509 | 0.002597 |
S | 1260 | D1260del | GAC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | B.1.621 | 0.000266 |
S | 1260 | D1260H | Gac | Cac | 3 | 3 | B.1.623 | 0.001609 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | C.37 | 0.000348 |
S | 1260 | D1260N | Gac | Aac | 3 | 3 | P.1.14 | 0.000143 |
S | 1260 | D1260Y | Gac | Tac | 3 | 3 | P.2 | 0.00056 |
S | 1260 | D1260E | gaC | gaA | 2 | 2 | 0.111111 | |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | A.1 | 0.000564 |
S | 1260 | D1260H | Gac | Cac | 2 | 2 | AY.102 | 0.000053 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | AY.102 | 0.000053 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | AY.113 | 0.000285 |
S | 1260 | D1260H | Gac | Cac | 2 | 2 | AY.119 | 0.000071 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.12 | 0.000632 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.120 | 0.000074 |
S | 1260 | D1260H | Gac | Cac | 2 | 2 | AY.120 | 0.000074 |
S | 1260 | D1260del | GAC | --- | 2 | 2 | AY.120 | 0.000074 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.14 | 0.000176 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | AY.20 | 0.000078 |
S | 1260 | D1260G | gAc | gGc | 2 | 2 | AY.23 | 0.000139 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.24 | 0.000862 |
S | 1260 | D1260del1 | gaC | ga- | 2 | 2 | AY.25 | 0.000012 |
S | 1260 | D1260del | GAC | --- | 2 | 2 | AY.25 | 0.000012 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.26 | 0.000057 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | AY.26 | 0.000057 |
S | 1260 | D1260G | gAc | gGc | 2 | 2 | AY.26 | 0.000057 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | AY.26 | 0.000057 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | AY.33 | 0.000134 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.36 | 0.000296 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | AY.39.1 | 0.000079 |
S | 1260 | D1260del1 | gaC | ga- | 2 | 2 | AY.4 | 0.000003 |
S | 1260 | D1260del2 | gAC | g-- | 2 | 2 | AY.4 | 0.000003 |
S | 1260 | D1260V | gAc | gTc | 2 | 2 | AY.4 | 0.000003 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.4.5 | 0.000215 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | AY.41 | 0.000588 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.42 | 0.00008 |
S | 1260 | D1260E | gaC | gaA | 2 | 2 | AY.43 | 0.000009 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | AY.45 | 0.000243 |
S | 1260 | D1260Y | Gac | Tac | 1 | 2 | AY.46.2 | 0.000635 |
S | 1260 | D1260Y | GaC | TaT | 1 | 2 | AY.46.2 | 0.000635 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | AY.5 | 0.000041 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | AY.6 | 0.000082 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | AY.67 | 0.000929 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | AY.71 | 0.00095 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.74 | 0.000231 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | AY.84 | 0.000875 |
S | 1260 | D1260E | gaC | gaA | 2 | 2 | AY.92 | 0.000575 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.98 | 0.000158 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | AY.99.2 | 0.000184 |
S | 1260 | D1260A | gAc | gCc | 2 | 2 | B.1 | 0.000018 |
S | 1260 | D1260V | gAc | gTc | 2 | 2 | B.1 | 0.000018 |
S | 1260 | D1260del | GAC | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 1260 | D1260G | gAc | gGc | 1 | 2 | B.1.1 | 0.000018 |
S | 1260 | D1260G | gAC | gGA | 1 | 2 | B.1.1 | 0.000018 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | B.1.1.28 | 0.000622 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | B.1.1.306 | 0.000877 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | B.1.1.324 | 0.105263 |
S | 1260 | D1260A | gAc | gCc | 2 | 2 | B.1.1.348 | 0.001592 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | B.1.177 | 0.000026 |
S | 1260 | D1260del | GAC | --- | 2 | 2 | B.1.177.16 | 0.001329 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | B.1.177.35 | 0.001382 |
S | 1260 | D1260del | GAC | --- | 2 | 2 | B.1.177.54 | 0.001213 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | B.1.221 | 0.000142 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | B.1.258.17 | 0.000208 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | B.1.351 | 0.000059 |
S | 1260 | D1260H | Gac | Cac | 2 | 2 | B.1.351 | 0.000059 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | B.1.36.31 | 0.003503 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | B.1.400 | 0.000858 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | B.1.560 | 0.009259 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | B.1.561 | 0.000794 |
S | 1260 | D1260E | gaC | gaA | 2 | 2 | B.1.595 | 0.000522 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | B.1.617.1 | 0.000258 |
S | 1260 | D1260A | gAc | gCc | 2 | 2 | B.1.617.2 | 0.000008 |
S | 1260 | D1260D | gaC | gaT | 2 | 2 | B.1.621 | 0.000177 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | B.1.623 | 0.001073 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | B.1.636 | 0.013423 |
S | 1260 | D1260A | gAc | gCc | 2 | 2 | B.52 | 0.020202 |
S | 1260 | D1260Y | Gac | Tac | 2 | 2 | D.2 | 0.00015 |
S | 1260 | D1260H | Gac | Cac | 2 | 2 | P.1 | 0.000032 |
S | 1260 | D1260E | gaC | gaA | 2 | 2 | P.1 | 0.000032 |
S | 1260 | D1260del | GAC | --- | 2 | 2 | P.1 | 0.000032 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | P.2 | 0.000373 |
S | 1260 | D1260N | Gac | Aac | 2 | 2 | P.3 | 0.00319 |
S | 1260 | D1260del | GAC | --- | 2 | 2 | U.3 | 0.007722 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | 0.055556 | |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | A | 0.000387 |
S | 1260 | D1260C | GAC | TGT | 1 | 1 | All | 0 |
S | 1260 | D1260I | GAc | ATc | 1 | 1 | All | 0 |
S | 1260 | D1260F | GAC | TTT | 1 | 1 | All | 0 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.100 | 0.000046 |
S | 1260 | D1260del1 | Gac | -ac | 1 | 1 | AY.100 | 0.000046 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | AY.100 | 0.000046 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.101 | 0.00049 |
S | 1260 | D1260E | gaC | gaG | 1 | 1 | AY.103 | 0.000006 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | AY.103 | 0.000006 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.103 | 0.000006 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.107 | 0.000466 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | AY.111 | 0.000183 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | AY.116 | 0.000287 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.117 | 0.000085 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.119 | 0.000035 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.12 | 0.000316 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.120.1 | 0.000321 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.121 | 0.000135 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | AY.20 | 0.000039 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.20 | 0.000039 |
S | 1260 | D1260E | gaC | gaG | 1 | 1 | AY.23 | 0.00007 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | AY.26 | 0.000028 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | AY.26 | 0.000028 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.27 | 0.000065 |
S | 1260 | D1260V | gAc | gTc | 1 | 1 | AY.29 | 0.000016 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.3 | 0.00001 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | AY.3 | 0.00001 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.33 | 0.000067 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | AY.33 | 0.000067 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | AY.34 | 0.000097 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | AY.35 | 0.000233 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | AY.39 | 0.000025 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.39.1 | 0.00004 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | AY.44 | 0.000006 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | AY.44 | 0.000006 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | AY.46 | 0.000104 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.46 | 0.000104 |
S | 1260 | D1260F | GAC | TTT | 1 | 1 | AY.46.2 | 0.000635 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.46.2 | 0.000635 |
S | 1260 | D1260G | gAC | gGT | 1 | 1 | AY.46.2 | 0.000635 |
S | 1260 | D1260V | gAC | gTT | 1 | 1 | AY.46.2 | 0.000635 |
S | 1260 | D1260C | GAC | TGT | 1 | 1 | AY.46.2 | 0.000635 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | AY.46.4 | 0.000165 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.46.6 | 0.000072 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.48 | 0.000465 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.5 | 0.000021 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | AY.5 | 0.000021 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.5.3 | 0.000337 |
S | 1260 | D1260G | gAC | gGG | 1 | 1 | AY.5.3 | 0.000337 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.5.3 | 0.000337 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.53 | 0.000288 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | AY.54 | 0.000095 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.54 | 0.000095 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | AY.6 | 0.000041 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | AY.6 | 0.000041 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | AY.60 | 0.000938 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.61 | 0.000105 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.66 | 0.00107 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | AY.69 | 0.000187 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.7 | 0.000196 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.70 | 0.000209 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.71 | 0.000475 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.74 | 0.000116 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.77 | 0.001127 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | AY.81 | 0.001992 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | AY.82 | 0.001357 |
S | 1260 | D1260del2 | GAc | --c | 1 | 1 | AY.83 | 0.001724 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.86 | 0.00083 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | AY.9 | 0.000068 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | AY.9.2 | 0.000037 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | AY.9.2 | 0.000037 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AY.95 | 0.000761 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | AY.98 | 0.000079 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | AY.98.1 | 0.000048 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | AZ.1 | 0.000867 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | B | 0.000128 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1 | 0.000009 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.1 | 0.000018 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | B.1.1 | 0.000018 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.1 | 0.000018 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | B.1.1 | 0.000018 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.1 | 0.000327 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.153 | 0.001095 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.216 | 0.00089 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | B.1.1.25 | 0.000569 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | B.1.1.284 | 0.000107 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.298 | 0.000862 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.1.301 | 0.001179 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.1.317 | 0.000412 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.347 | 0.018182 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.39 | 0.00051 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.1.397 | 0.002252 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.1.397 | 0.002252 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | B.1.1.397 | 0.002252 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.1.50 | 0.000679 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.1.523 | 0.001563 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.54 | 0.003021 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.63 | 0.000386 |
S | 1260 | D1260del1 | GAC | -NN | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.1.70 | 0.000341 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.1.91 | 0.166667 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | B.1.177 | 0.000013 |
S | 1260 | D1260del1 | gaC | ga- | 1 | 1 | B.1.177 | 0.000013 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | B.1.177 | 0.000013 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | B.1.177 | 0.000013 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | B.1.177.18 | 0.00116 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.177.19 | 0.001431 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.177.23 | 0.003236 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.177.57 | 0.000281 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.177.64 | 0.090909 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.177.81 | 0.000189 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.177.81 | 0.000189 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.177.86 | 0.000183 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.177.86 | 0.000183 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | B.1.2 | 0.000009 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.221 | 0.000071 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.221.1 | 0.002907 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.234 | 0.000132 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.243 | 0.00007 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.258 | 0.000067 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | B.1.258.11 | 0.000396 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.258.14 | 0.00098 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.301 | 0.005917 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.311 | 0.000275 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.311 | 0.000275 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.324 | 0.001605 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.349 | 0.000715 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | B.1.351 | 0.00003 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.351 | 0.00003 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.351.2 | 0.000303 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.356 | 0.001727 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.36.1 | 0.00114 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.36.33 | 0.007576 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.36.7 | 0.004 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.389 | 0.001002 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.400 | 0.000429 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.416 | 0.001269 |
S | 1260 | D1260del1 | gaC | ga- | 1 | 1 | B.1.429 | 0.000024 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.429 | 0.000024 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.429 | 0.000024 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.429 | 0.000024 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.471 | 0.002732 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.473 | 0.019231 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | B.1.499 | 0.00105 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.509 | 0.000866 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.525 | 0.000113 |
S | 1260 | D1260V | gAc | gTc | 1 | 1 | B.1.526 | 0.000024 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.526 | 0.000024 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.544 | 0.006024 |
S | 1260 | D1260I | GAc | ATc | 1 | 1 | B.1.561 | 0.000397 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.564 | 0.000426 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.567 | 0.003333 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | B.1.568 | 0.001111 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.568 | 0.001111 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.576 | 0.000907 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | B.1.576 | 0.000907 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.587 | 0.001898 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.595 | 0.000261 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.596 | 0.000087 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | B.1.609 | 0.000479 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.612 | 0.002653 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1260 | D1260del1 | gaC | ga- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | B.1.621 | 0.000089 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.628 | 0.000352 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.1.93 | 0.000934 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | B.4.7 | 0.010101 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | C.14 | 0.004329 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | C.30 | 0.001727 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | C.36 | 0.000911 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | C.36 | 0.000911 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | C.36 | 0.000911 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | C.37 | 0.000116 |
S | 1260 | D1260H | Gac | Cac | 1 | 1 | D.2 | 0.000075 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | D.2 | 0.000075 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | P.1 | 0.000016 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | P.1.10 | 0.000269 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | P.1.10 | 0.000269 |
S | 1260 | D1260G | gAc | gGc | 1 | 1 | P.1.14 | 0.000048 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | P.1.14 | 0.000048 |
S | 1260 | D1260E | gaC | gaA | 1 | 1 | P.1.14 | 0.000048 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | P.1.15 | 0.000232 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | P.1.2 | 0.001156 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | P.1.2 | 0.001156 |
S | 1260 | D1260del | GAC | --- | 1 | 1 | P.2 | 0.000187 |
S | 1260 | D1260A | gAc | gCc | 1 | 1 | Q.1 | 0.000126 |
S | 1260 | D1260del2 | gAC | g-- | 1 | 1 | Q.2 | 0.000613 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | Q.2 | 0.000613 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | Q.3 | 0.000145 |
S | 1260 | D1260N | Gac | Aac | 1 | 1 | Q.8 | 0.000165 |
S | 1260 | D1260D | gaC | gaT | 1 | 1 | Q.8 | 0.000165 |
S | 1260 | D1260Y | Gac | Tac | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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