CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1251 | G1251V | nonsyn | gGa | gTa | 2026 | 2026 | 1 | 25313-25315 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1251 | G1251V | gGa | gTa | 2026 | 2026 | All | 0.000387 |
S | 1251 | G1251V | gGa | gTa | 413 | 413 | AU.2 | 1 |
S | 1251 | G1251V | gGa | gTa | 231 | 231 | B.1.617.2 | 0.00087 |
S | 1251 | G1251V | gGa | gTa | 214 | 214 | B.1.1.7 | 0.000192 |
S | 1251 | G1251V | gGa | gTa | 174 | 174 | AY.4 | 0.000271 |
S | 1251 | G1251V | gGa | gTa | 152 | 152 | B.1.1.406 | 0.987013 |
S | 1251 | G1251V | gGa | gTa | 65 | 65 | B.1.2 | 0.000572 |
S | 1251 | G1251V | gGa | gTa | 61 | 61 | B.1.1.284 | 0.006551 |
S | 1251 | G1251V | gGa | gTa | 54 | 54 | B.1 | 0.000495 |
S | 1251 | G1251V | gGa | gTa | 51 | 51 | AY.43 | 0.000226 |
S | 1251 | G1251V | gGa | gTa | 51 | 51 | AY.44 | 0.00031 |
S | 1251 | G1251V | gGa | gTa | 42 | 42 | B.1.526 | 0.000987 |
S | 1251 | G1251V | gGa | gTa | 40 | 40 | B.1.427 | 0.00202 |
S | 1251 | G1251V | gGa | gTa | 37 | 37 | AY.103 | 0.00023 |
S | 1251 | G1251V | gGa | gTa | 28 | 28 | B.1.36 | 0.004085 |
S | 1251 | G1251V | gGa | gTa | 25 | 25 | B.1.1.526 | 0.088652 |
S | 1251 | G1251V | gGa | gTa | 23 | 23 | AY.98 | 0.001817 |
S | 1251 | G1251V | gGa | gTa | 19 | 19 | AY.25 | 0.000114 |
S | 1251 | G1251V | gGa | gTa | 19 | 19 | AY.39 | 0.00047 |
S | 1251 | G1251V | gGa | gTa | 19 | 19 | AY.73 | 0.012641 |
S | 1251 | G1251V | gGa | gTa | 18 | 18 | P.1.14 | 0.00086 |
S | 1251 | G1251V | gGa | gTa | 16 | 16 | AY.98.1 | 0.000775 |
S | 1251 | G1251V | gGa | gTa | 14 | 14 | AY.102 | 0.000371 |
S | 1251 | G1251V | gGa | gTa | 11 | 11 | AY.119 | 0.000388 |
S | 1251 | G1251V | gGa | gTa | 11 | 11 | B.1.1.8 | 0.039427 |
S | 1251 | G1251V | gGa | gTa | 11 | 11 | B.1.637 | 0.000804 |
S | 1251 | G1251V | gGa | gTa | 10 | 10 | AU.1 | 0.012658 |
S | 1251 | G1251V | gGa | gTa | 10 | 10 | B.1.1.519 | 0.000397 |
S | 1251 | G1251V | gGa | gTa | 9 | 9 | AM.1 | 1 |
S | 1251 | G1251V | gGa | gTa | 9 | 9 | P.1 | 0.000142 |
S | 1251 | G1251V | gGa | gTa | 8 | 8 | AY.42 | 0.000322 |
S | 1251 | G1251V | gGa | gTa | 8 | 8 | B.1.620 | 0.007569 |
S | 1251 | G1251V | gGa | gTa | 7 | 7 | AY.9.2 | 0.000257 |
S | 1251 | G1251V | gGa | gTa | 7 | 7 | B.1.1.306 | 0.003069 |
S | 1251 | G1251V | gGa | gTa | 7 | 7 | W.2 | 0.033816 |
S | 1251 | G1251V | gGa | gTa | 6 | 6 | B.1.1 | 0.000109 |
S | 1251 | G1251V | gGa | gTa | 6 | 6 | B.1.221 | 0.000426 |
S | 1251 | G1251V | gGa | gTa | 5 | 5 | AY.5 | 0.000103 |
S | 1251 | G1251V | gGa | gTa | 5 | 5 | B.1.596 | 0.000436 |
S | 1251 | G1251V | gGa | gTa | 5 | 5 | B.1.621 | 0.000443 |
S | 1251 | G1251V | gGa | gTa | 4 | 4 | AY.6 | 0.000165 |
S | 1251 | G1251V | gGa | gTa | 4 | 4 | B.1.177.73 | 0.002265 |
S | 1251 | G1251V | gGa | gTa | 4 | 4 | R.1 | 0.00036 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.118 | 0.000188 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.20 | 0.000117 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.45 | 0.000365 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.46 | 0.000312 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.46.6 | 0.000217 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.68 | 0.000821 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | B.6 | 0.00273 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | D.2 | 0.000225 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | A | 0.000774 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.114 | 0.000462 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.13 | 0.000322 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.14 | 0.000176 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.16 | 0.000759 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.23 | 0.000139 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.29 | 0.000032 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.3 | 0.00002 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.3.1 | 0.000171 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.32 | 0.001065 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.86 | 0.00166 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B | 0.000256 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.1.214 | 0.000111 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.160 | 0.000062 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.177 | 0.000026 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.177.81 | 0.000379 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.237 | 0.00995 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.429 | 0.000047 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.525 | 0.000226 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.575 | 0.000607 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | A.1 | 0.000282 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.100 | 0.000046 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.111 | 0.000183 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.120 | 0.000037 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.16.1 | 0.00047 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.33 | 0.000067 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.4.3 | 0.000842 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.52 | 0.000814 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.62 | 0.000436 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.65 | 0.000533 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.69 | 0.000187 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.84 | 0.000437 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.92 | 0.000287 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AZ.2 | 0.000821 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.1.192 | 0.002309 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.1.28 | 0.000311 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.1.318 | 0.000302 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.1.372 | 0.000689 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.112 | 0.005181 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.177.12 | 0.000152 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.177.21 | 0.000076 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.177.82 | 0.000477 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.234 | 0.000132 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.243 | 0.00007 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.260 | 0.003344 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.336 | 0.002439 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.349 | 0.000715 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.351 | 0.00003 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.36.22 | 0.001208 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.466.2 | 0.000391 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.480 | 0.002488 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.549 | 0.007194 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.580 | 0.004065 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.582 | 0.000491 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.588 | 0.00091 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.595 | 0.000261 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.621.1 | 0.000506 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.623 | 0.000536 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.61 | 0.005747 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | C.36 | 0.000911 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | P.1.16 | 0.000374 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | P.2 | 0.000187 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | Q.1 | 0.000126 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | Q.7 | 0.001111 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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