CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1251

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1251G1251VnonsyngGagTa20262026125313-25315
S1251G1251GsynggAggG10309730.9446625313-25315
S1251G1251GsynggAggC1030320.03106825313-25315
S1251G1251GsynggAggT1030250.024271825313-25315
S1251G1251RnonsynGgaAga9899430.95348825313-25315
S1251G1251RnonsynGgaCga989460.046511625313-25315
S1251G1251AnonsyngGagCa2562550.99609425313-25315
S1251G1251AnonsyngGAgCG25610.0039062525313-25315
S1251G1251EnonsyngGagAa199199125313-25315
S1251G1251deldelGGA---9292125313-25315
S1251G1251XnonsynGgaTga1111125313-25315
S1251G1251LnonsynGGaTTa66125313-25315
S1251G1251del1delGga-ga540.825313-25315
S1251G1251del1delggAgg-510.225313-25315

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1251G1251VgGagTa20262026All0.000387
S1251G1251GggAggG9731030All0.000186
S1251G1251GggAggC321030All0.000006
S1251G1251GggAggT251030All0.000005
S1251G1251RGgaAga943989All0.00018
S1251G1251RGgaCga46989All0.000009
S1251G1251RGgaAga630632B.1.1.70.000564
S1251G1251RGgaCga2632B.1.1.70.000002
S1251G1251VgGagTa413413AU.21
S1251G1251GggAggG384386AY.40.000598
S1251G1251GggAggT1386AY.40.000002
S1251G1251GggAggC1386AY.40.000002
S1251G1251AgGagCa255256All0.000049
S1251G1251AgGAgCG1256All0
S1251G1251VgGagTa231231B.1.617.20.00087
S1251G1251GggAggG222225B.1.1.70.000199
S1251G1251GggAggC2225B.1.1.70.000002
S1251G1251GggAggT1225B.1.1.70.000001
S1251G1251VgGagTa214214B.1.1.70.000192
S1251G1251EgGagAa199199All0.000038
S1251G1251AgGagCa193193AY.440.001175
S1251G1251VgGagTa174174AY.40.000271
S1251G1251VgGagTa152152B.1.1.4060.987013
S1251G1251delGGA---9292All0.000018
S1251G1251RGgaAga7680AY.250.000457
S1251G1251RGgaCga480AY.250.000024
S1251G1251GggAggG6667B.1.10.001197
S1251G1251GggAggC167B.1.10.000018
S1251G1251VgGagTa6565B.1.20.000572
S1251G1251VgGagTa6161B.1.1.2840.006551
S1251G1251VgGagTa5454B.10.000495
S1251G1251VgGagTa5151AY.430.000226
S1251G1251VgGagTa5151AY.440.00031
S1251G1251VgGagTa4242B.1.5260.000987
S1251G1251VgGagTa4040B.1.4270.00202
S1251G1251delGGA---3939B.1.1.70.000035
S1251G1251VgGagTa3737AY.1030.00023
S1251G1251RGgaCga3535AY.80.021212
S1251G1251EgGagAa3434B.1.1.70.00003
S1251G1251RGgaAga3333B.1.1.5190.00131
S1251G1251AgGagCa3232B.1.1.70.000029
S1251G1251GggAggG3031AY.250.00018
S1251G1251GggAggC131AY.250.000006
S1251G1251GggAggG3030B.1.1.610.263158
S1251G1251EgGagAa3030B.1.617.20.000113
S1251G1251VgGagTa2828B.1.360.004085
S1251G1251RGgaAga2727AY.40.000042
S1251G1251VgGagTa2525B.1.1.5260.088652
S1251G1251GggAggG2424AY.99.20.002212
S1251G1251VgGagTa2323AY.980.001817
S1251G1251EgGagAa2222AY.40.000034
S1251G1251GggAggG2021B.1.20.000176
S1251G1251GggAggT121B.1.20.000009
S1251G1251GggAggG2020AY.230.001395
S1251G1251GggAggG1720B.1.617.20.000064
S1251G1251GggAggC220B.1.617.20.000008
S1251G1251GggAggT120B.1.617.20.000004
S1251G1251RGgaAga2020Q.10.002527
S1251G1251VgGagTa1919AY.250.000114
S1251G1251VgGagTa1919AY.390.00047
S1251G1251VgGagTa1919AY.730.012641
S1251G1251delGGA---1818AY.4.50.001935
S1251G1251VgGagTa1818P.1.140.00086
S1251G1251GggAggG1417AY.430.000062
S1251G1251GggAggT217AY.430.000009
S1251G1251GggAggC117AY.430.000004
S1251G1251EgGagAa1616AY.250.000096
S1251G1251VgGagTa1616AY.98.10.000775
S1251G1251VgGagTa1414AY.1020.000371
S1251G1251RGgaAga1313AY.740.001503
S1251G1251RGgaAga1313B.1.5770.008935
S1251G1251XGgaTga1111All0.000002
S1251G1251VgGagTa1111AY.1190.000388
S1251G1251VgGagTa1111B.1.1.80.039427
S1251G1251GggAggG411B.1.1770.000053
S1251G1251GggAggT411B.1.1770.000053
S1251G1251GggAggC311B.1.1770.00004
S1251G1251RGgaAga1111B.1.4040.014323
S1251G1251VgGagTa1111B.1.6370.000804
S1251G1251RGgaAga1111P.10.000173
S1251G1251VgGagTa1010AU.10.012658
S1251G1251GggAggG910AY.1030.000056
S1251G1251GggAggT110AY.1030.000006
S1251G1251EgGagAa1010AY.430.000044
S1251G1251VgGagTa1010B.1.1.5190.000397
S1251G1251RGgaAga1010B.1.5260.000235
S1251G1251VgGagTa99AM.11
S1251G1251delGGA---99B.1.1770.000119
S1251G1251VgGagTa99P.10.000142
S1251G1251EgGagAa88AY.3.10.000682
S1251G1251VgGagTa88AY.420.000322
S1251G1251RGgaAga88AY.440.000049
S1251G1251GggAggG68B.10.000055
S1251G1251GggAggC28B.10.000018
S1251G1251VgGagTa88B.1.6200.007569
S1251G1251RGgaAga77AY.1170.000592
S1251G1251GggAggG37AY.200.000117
S1251G1251GggAggT37AY.200.000117
S1251G1251GggAggC17AY.200.000039
S1251G1251VgGagTa77AY.9.20.000257
S1251G1251VgGagTa77B.1.1.3060.003069
S1251G1251VgGagTa77W.20.033816
S1251G1251LGGaTTa66All0.000001
S1251G1251GggAggG66AY.270.000388
S1251G1251EgGagAa66AY.270.000388
S1251G1251GggAggG56AY.390.000124
S1251G1251GggAggC16AY.390.000025
S1251G1251VgGagTa66B.1.10.000109
S1251G1251GggAggG36B.1.1.280.000934
S1251G1251GggAggT36B.1.1.280.000934
S1251G1251RGgaAga66B.1.1.2910.004454
S1251G1251VgGagTa66B.1.2210.000426
S1251G1251RGgaAga66B.1.2430.000418
S1251G1251del1Gga-ga45All0.000001
S1251G1251del1ggAgg-15All0
S1251G1251RGgaAga55AY.1030.000031
S1251G1251GggAggG55AY.440.00003
S1251G1251RGgaAga55AY.470.000156
S1251G1251VgGagTa55AY.50.000103
S1251G1251GggAggG55AY.620.002179
S1251G1251EgGagAa55B.1.10.000091
S1251G1251GggAggG55B.1.3510.000149
S1251G1251RGgaAga55B.1.3510.000149
S1251G1251GggAggG55B.1.5960.000436
S1251G1251VgGagTa55B.1.5960.000436
S1251G1251AgGagCa55B.1.617.20.000019
S1251G1251RGgaAga45B.1.617.20.000015
S1251G1251RGgaCga15B.1.617.20.000004
S1251G1251VgGagTa55B.1.6210.000443
S1251G1251GggAggC35P.10.000047
S1251G1251GggAggG25P.10.000032
S1251G1251AgGagCa44AY.390.000099
S1251G1251EgGagAa44AY.50.000083
S1251G1251RGgaAga44AY.50.000083
S1251G1251VgGagTa44AY.60.000165
S1251G1251GggAggG44AY.710.0019
S1251G1251GggAggG44B.1.1110.0047
S1251G1251VgGagTa44B.1.177.730.002265
S1251G1251EgGagAa44P.10.000063
S1251G1251VgGagTa44R.10.00036
S1251G1251GggAggT23AY.1020.000053
S1251G1251GggAggG13AY.1020.000027
S1251G1251AgGagCa33AY.1030.000019
S1251G1251EgGagAa33AY.1030.000019
S1251G1251VgGagTa33AY.1180.000188
S1251G1251GggAggG33AY.120.10.000963
S1251G1251VgGagTa33AY.200.000117
S1251G1251EgGagAa33AY.23.10.001252
S1251G1251GggAggG33AY.240.001293
S1251G1251GggAggG33AY.30.00003
S1251G1251RGgaAga33AY.390.000074
S1251G1251VgGagTa33AY.450.000365
S1251G1251VgGagTa33AY.460.000312
S1251G1251VgGagTa33AY.46.60.000217
S1251G1251VgGagTa33AY.680.000821
S1251G1251EgGagAa33AY.920.000862
S1251G1251GggAggG33AY.980.000237
S1251G1251GggAggG33B.1.1.3170.001235
S1251G1251RGgaAga33B.1.20.000026
S1251G1251EgGagAa33B.1.20.000026
S1251G1251GggAggG33B.1.3910.003382
S1251G1251AgGagCa33B.1.3960.002117
S1251G1251GggAggG33B.1.466.20.001174
S1251G1251EgGagAa33B.1.5610.001191
S1251G1251RGgaAga33B.1.5880.00273
S1251G1251LGGaTTa33B.1.617.20.000011
S1251G1251RGgaCga33B.1.6280.001057
S1251G1251VgGagTa33B.60.00273
S1251G1251GggAggG23C.370.000232
S1251G1251GggAggC13C.370.000116
S1251G1251EgGagAa33D.20.000225
S1251G1251VgGagTa33D.20.000225
S1251G1251VgGagTa22A0.000774
S1251G1251VgGagTa22AY.1140.000462
S1251G1251GggAggG22AY.1190.000071
S1251G1251VgGagTa22AY.130.000322
S1251G1251VgGagTa22AY.140.000176
S1251G1251VgGagTa22AY.160.000759
S1251G1251VgGagTa22AY.230.000139
S1251G1251EgGagAa22AY.260.000057
S1251G1251RGgaAga22AY.260.000057
S1251G1251EgGagAa22AY.290.000032
S1251G1251GggAggG22AY.290.000032
S1251G1251VgGagTa22AY.290.000032
S1251G1251VgGagTa22AY.30.00002
S1251G1251VgGagTa22AY.3.10.000171
S1251G1251GggAggC12AY.300.000396
S1251G1251GggAggG12AY.300.000396
S1251G1251VgGagTa22AY.320.001065
S1251G1251GggAggC22AY.340.000194
S1251G1251EgGagAa22AY.370.000632
S1251G1251VgGagTa22AY.39.10.000079
S1251G1251GggAggG12AY.4.50.000107
S1251G1251GggAggC12AY.4.50.000107
S1251G1251GggAggT22AY.410.000588
S1251G1251RGgaAga22AY.430.000009
S1251G1251GggAggT22AY.50.000041
S1251G1251EgGagAa22AY.500.001599
S1251G1251GggAggG22AY.730.001331
S1251G1251EgGagAa22AY.740.000231
S1251G1251RGgaAga22AY.830.003448
S1251G1251VgGagTa22AY.860.00166
S1251G1251VgGagTa22B0.000256
S1251G1251AgGagCa12B.10.000009
S1251G1251AgGAgCG12B.10.000009
S1251G1251AgGagCa22B.1.10.000036
S1251G1251VgGagTa22B.1.1.2140.000111
S1251G1251EgGagAa22B.1.1.2140.000111
S1251G1251RGgaAga22B.1.1.2840.000215
S1251G1251del1ggAgg-12B.1.1.70.000001
S1251G1251del1Gga-ga12B.1.1.70.000001
S1251G1251VgGagTa22B.1.1600.000062
S1251G1251EgGagAa22B.1.1770.000026
S1251G1251VgGagTa22B.1.1770.000026
S1251G1251delGGA---22B.1.177.40.000422
S1251G1251VgGagTa22B.1.177.810.000379
S1251G1251VgGagTa22B.1.2370.00995
S1251G1251GggAggG22B.1.2580.000133
S1251G1251GggAggG22B.1.3320.006993
S1251G1251VgGagTa22B.1.4290.000047
S1251G1251GggAggG22B.1.4290.000047
S1251G1251VgGagTa22B.1.5250.000226
S1251G1251VgGagTa22B.1.5750.000607
S1251G1251delGGA---22B.1.617.20.000008
S1251G1251GggAggG22B.1.6210.000177
S1251G1251RGgaAga22B.1.6370.000146
S1251G1251XGgaTga22D.20.00015
S1251G1251XGgaTga11A0.000387
S1251G1251VgGagTa11A.10.000282
S1251G1251GggAggG11AD.20.000219
S1251G1251EgGagAa11AM.40.003571
S1251G1251GggAggG11AY.1000.000046
S1251G1251EgGagAa11AY.1000.000046
S1251G1251VgGagTa11AY.1000.000046
S1251G1251EgGagAa11AY.1010.00049
S1251G1251EgGagAa11AY.1020.000027
S1251G1251XGgaTga11AY.1030.000006
S1251G1251RGgaAga11AY.1080.001103
S1251G1251EgGagAa11AY.1080.001103
S1251G1251EgGagAa11AY.1090.00074
S1251G1251EgGagAa11AY.1110.000183
S1251G1251GggAggG11AY.1110.000183
S1251G1251VgGagTa11AY.1110.000183
S1251G1251GggAggG11AY.1130.000142
S1251G1251AgGagCa11AY.1140.000231
S1251G1251GggAggG11AY.1170.000085
S1251G1251RGgaAga11AY.1180.000063
S1251G1251RGgaAga11AY.1190.000035
S1251G1251GggAggG11AY.120.000316
S1251G1251delGGA---11AY.1200.000037
S1251G1251VgGagTa11AY.1200.000037
S1251G1251GggAggC11AY.1200.000037
S1251G1251EgGagAa11AY.1200.000037
S1251G1251AgGagCa11AY.1210.000135
S1251G1251GggAggG11AY.16.10.00047
S1251G1251VgGagTa11AY.16.10.00047
S1251G1251AgGagCa11AY.230.00007
S1251G1251RGgaAga11AY.230.00007
S1251G1251delGGA---11AY.250.000006
S1251G1251GggAggG11AY.260.000028
S1251G1251del1Gga-ga11AY.30.00001
S1251G1251GggAggG11AY.3.10.000085
S1251G1251GggAggG11AY.320.000532
S1251G1251VgGagTa11AY.330.000067
S1251G1251GggAggC11AY.350.000233
S1251G1251LGGaTTa11AY.390.000025
S1251G1251EgGagAa11AY.390.000025
S1251G1251AgGagCa11AY.39.10.00004
S1251G1251AgGagCa11AY.40.000002
S1251G1251delGGA---11AY.40.000002
S1251G1251EgGagAa11AY.4.20.000022
S1251G1251GggAggC11AY.4.20.000022
S1251G1251VgGagTa11AY.4.30.000842
S1251G1251GggAggG11AY.420.00004
S1251G1251RGgaAga11AY.420.00004
S1251G1251EgGagAa11AY.420.00004
S1251G1251LGGaTTa11AY.430.000004
S1251G1251EgGagAa11AY.440.000006
S1251G1251XGgaTga11AY.440.000006
S1251G1251GggAggC11AY.450.000122
S1251G1251GggAggG11AY.46.60.000072
S1251G1251AgGagCa11AY.470.000031
S1251G1251RGgaAga11AY.480.000465
S1251G1251delGGA---11AY.50.000021
S1251G1251GggAggG11AY.5.30.000337
S1251G1251VgGagTa11AY.520.000814
S1251G1251RGgaAga11AY.540.000095
S1251G1251VgGagTa11AY.620.000436
S1251G1251EgGagAa11AY.650.000533
S1251G1251VgGagTa11AY.650.000533
S1251G1251VgGagTa11AY.690.000187
S1251G1251GggAggT11AY.70.000196
S1251G1251EgGagAa11AY.720.001361
S1251G1251GggAggG11AY.740.000116
S1251G1251RGgaCga11AY.750.000056
S1251G1251GggAggG11AY.750.000056
S1251G1251GggAggG11AY.790.001211
S1251G1251delGGA---11AY.810.001992
S1251G1251VgGagTa11AY.840.000437
S1251G1251RGgaAga11AY.850.000427
S1251G1251RGgaAga11AY.90.000068
S1251G1251XGgaTga11AY.90.000068
S1251G1251RGgaAga11AY.9.10.000084
S1251G1251EgGagAa11AY.900.000684
S1251G1251EgGagAa11AY.910.00073
S1251G1251VgGagTa11AY.920.000287
S1251G1251GggAggG11AY.940.000443
S1251G1251AgGagCa11AY.980.000079
S1251G1251EgGagAa11AY.98.10.000048
S1251G1251AgGagCa11AY.99.20.000092
S1251G1251VgGagTa11AZ.20.000821
S1251G1251XGgaTga11B0.000128
S1251G1251RGgaAga11B.10.000009
S1251G1251del1Gga-ga11B.10.000009
S1251G1251XGgaTga11B.10.000009
S1251G1251EgGagAa11B.10.000009
S1251G1251RGgaAga11B.1.1.1520.04
S1251G1251VgGagTa11B.1.1.1920.002309
S1251G1251GggAggG11B.1.1.2200.001859
S1251G1251GggAggG11B.1.1.2220.000204
S1251G1251AgGagCa11B.1.1.280.000311
S1251G1251VgGagTa11B.1.1.280.000311
S1251G1251delGGA---11B.1.1.3010.001179
S1251G1251RGgaAga11B.1.1.3060.000438
S1251G1251GggAggG11B.1.1.3060.000438
S1251G1251VgGagTa11B.1.1.3180.000302
S1251G1251RGgaAga11B.1.1.3680.003086
S1251G1251delGGA---11B.1.1.370.000193
S1251G1251VgGagTa11B.1.1.3720.000689
S1251G1251GggAggG11B.1.1.4090.002833
S1251G1251GggAggG11B.1.1.5180.006329
S1251G1251GggAggG11B.1.1.5190.00004
S1251G1251EgGagAa11B.1.1060.03125
S1251G1251VgGagTa11B.1.1120.005181
S1251G1251RGgaAga11B.1.1600.000031
S1251G1251EgGagAa11B.1.1600.000031
S1251G1251delGGA---11B.1.1600.000031
S1251G1251delGGA---11B.1.160.230.004831
S1251G1251RGgaAga11B.1.1770.000013
S1251G1251VgGagTa11B.1.177.120.000152
S1251G1251GggAggG11B.1.177.120.000152
S1251G1251delGGA---11B.1.177.170.000821
S1251G1251delGGA---11B.1.177.180.00116
S1251G1251delGGA---11B.1.177.190.001431
S1251G1251VgGagTa11B.1.177.210.000076
S1251G1251VgGagTa11B.1.177.40.000211
S1251G1251GggAggG11B.1.177.430.001477
S1251G1251GggAggC11B.1.177.440.000519
S1251G1251delGGA---11B.1.177.540.000606
S1251G1251GggAggG11B.1.177.570.000281
S1251G1251GggAggG11B.1.177.720.00339
S1251G1251RGgaAga11B.1.177.750.001041
S1251G1251delGGA---11B.1.177.760.002494
S1251G1251GggAggG11B.1.177.820.000477
S1251G1251VgGagTa11B.1.177.820.000477
S1251G1251RGgaAga11B.1.177.870.000728
S1251G1251GggAggG11B.1.214.20.0006
S1251G1251RGgaAga11B.1.2210.000071
S1251G1251delGGA---11B.1.221.10.002907
S1251G1251EgGagAa11B.1.2250.015385
S1251G1251delGGA---11B.1.230.006061
S1251G1251GggAggG11B.1.2330.014085
S1251G1251RGgaAga11B.1.2340.000132
S1251G1251VgGagTa11B.1.2340.000132
S1251G1251EgGagAa11B.1.2390.001221
S1251G1251GggAggG11B.1.2400.000216
S1251G1251del1Gga-ga11B.1.2430.00007
S1251G1251VgGagTa11B.1.2430.00007
S1251G1251EgGagAa11B.1.2580.000067
S1251G1251VgGagTa11B.1.2600.003344
S1251G1251RGgaAga11B.1.2640.012346
S1251G1251VgGagTa11B.1.3360.002439
S1251G1251VgGagTa11B.1.3490.000715
S1251G1251EgGagAa11B.1.3510.00003
S1251G1251VgGagTa11B.1.3510.00003
S1251G1251VgGagTa11B.1.36.170.000494
S1251G1251delGGA---11B.1.36.180.00042
S1251G1251VgGagTa11B.1.36.220.001208
S1251G1251GggAggG11B.1.36.310.001751
S1251G1251EgGagAa11B.1.3690.000285
S1251G1251RGgaAga11B.1.3770.004566
S1251G1251delGGA---11B.1.3890.001002
S1251G1251GggAggG11B.1.3960.000706
S1251G1251RGgaAga11B.1.3990.001934
S1251G1251delGGA---11B.1.4090.000781
S1251G1251GggAggT11B.1.4160.001269
S1251G1251RGgaAga11B.1.4270.00005
S1251G1251GggAggG11B.1.4270.00005
S1251G1251LGGaTTa11B.1.4270.00005
S1251G1251EgGagAa11B.1.4290.000024
S1251G1251VgGagTa11B.1.466.20.000391
S1251G1251VgGagTa11B.1.4800.002488
S1251G1251EgGagAa11B.1.5060.02381
S1251G1251GggAggC11B.1.5090.000866
S1251G1251XGgaTga11B.1.5230.002451
S1251G1251XGgaTga11B.1.5250.000113
S1251G1251GggAggG11B.1.5260.000024
S1251G1251VgGagTa11B.1.5490.007194
S1251G1251GggAggG11B.1.5650.00081
S1251G1251GggAggG11B.1.5760.000907
S1251G1251VgGagTa11B.1.5800.004065
S1251G1251VgGagTa11B.1.5820.000491
S1251G1251VgGagTa11B.1.5880.00091
S1251G1251VgGagTa11B.1.5950.000261
S1251G1251XGgaTga11B.1.5960.000087
S1251G1251VgGagTa11B.1.621.10.000506
S1251G1251VgGagTa11B.1.6230.000536
S1251G1251GggAggC11B.1.6300.005236
S1251G1251RGgaAga11B.390.002331
S1251G1251GggAggG11B.6.60.000889
S1251G1251VgGagTa11B.610.005747
S1251G1251VgGagTa11C.360.000911
S1251G1251GggAggG11C.36.30.000567
S1251G1251RGgaAga11D.20.000075
S1251G1251delGGA---11P.10.000016
S1251G1251RGgaAga11P.1.100.000269
S1251G1251EgGagAa11P.1.140.000048
S1251G1251RGgaAga11P.1.150.000232
S1251G1251GggAggC11P.1.150.000232
S1251G1251delGGA---11P.1.150.000232
S1251G1251VgGagTa11P.1.160.000374
S1251G1251AgGagCa11P.1.40.000977
S1251G1251AgGagCa11P.1.70.000319
S1251G1251VgGagTa11P.20.000187
S1251G1251VgGagTa11Q.10.000126
S1251G1251GggAggC11Q.20.000613
S1251G1251RGgaAga11Q.40.000455
S1251G1251VgGagTa11Q.70.001111
S1251G1251GggAggG11Q.80.000165
S1251G1251VgGagTa11Q.80.000165
S1251G1251AgGagCa11Q.80.000165
S1251G1251RGgaAga11Q.80.000165
S1251G1251delGGA---11U.30.003861