CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1251 | G1251V | nonsyn | gGa | gTa | 2026 | 2026 | 1 | 25313-25315 | |
S | 1251 | G1251G | syn | ggA | ggG | 1030 | 973 | 0.94466 | 25313-25315 | |
S | 1251 | G1251G | syn | ggA | ggC | 1030 | 32 | 0.031068 | 25313-25315 | |
S | 1251 | G1251G | syn | ggA | ggT | 1030 | 25 | 0.0242718 | 25313-25315 | |
S | 1251 | G1251R | nonsyn | Gga | Aga | 989 | 943 | 0.953488 | 25313-25315 | |
S | 1251 | G1251R | nonsyn | Gga | Cga | 989 | 46 | 0.0465116 | 25313-25315 | |
S | 1251 | G1251A | nonsyn | gGa | gCa | 256 | 255 | 0.996094 | 25313-25315 | |
S | 1251 | G1251A | nonsyn | gGA | gCG | 256 | 1 | 0.00390625 | 25313-25315 | |
S | 1251 | G1251E | nonsyn | gGa | gAa | 199 | 199 | 1 | 25313-25315 | |
S | 1251 | G1251del | del | GGA | --- | 92 | 92 | 1 | 25313-25315 | |
S | 1251 | G1251X | nonsyn | Gga | Tga | 11 | 11 | 1 | 25313-25315 | |
S | 1251 | G1251L | nonsyn | GGa | TTa | 6 | 6 | 1 | 25313-25315 | |
S | 1251 | G1251del1 | del | Gga | -ga | 5 | 4 | 0.8 | 25313-25315 | |
S | 1251 | G1251del1 | del | ggA | gg- | 5 | 1 | 0.2 | 25313-25315 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1251 | G1251V | gGa | gTa | 2026 | 2026 | All | 0.000387 |
S | 1251 | G1251G | ggA | ggG | 973 | 1030 | All | 0.000186 |
S | 1251 | G1251G | ggA | ggC | 32 | 1030 | All | 0.000006 |
S | 1251 | G1251G | ggA | ggT | 25 | 1030 | All | 0.000005 |
S | 1251 | G1251R | Gga | Aga | 943 | 989 | All | 0.00018 |
S | 1251 | G1251R | Gga | Cga | 46 | 989 | All | 0.000009 |
S | 1251 | G1251R | Gga | Aga | 630 | 632 | B.1.1.7 | 0.000564 |
S | 1251 | G1251R | Gga | Cga | 2 | 632 | B.1.1.7 | 0.000002 |
S | 1251 | G1251V | gGa | gTa | 413 | 413 | AU.2 | 1 |
S | 1251 | G1251G | ggA | ggG | 384 | 386 | AY.4 | 0.000598 |
S | 1251 | G1251G | ggA | ggT | 1 | 386 | AY.4 | 0.000002 |
S | 1251 | G1251G | ggA | ggC | 1 | 386 | AY.4 | 0.000002 |
S | 1251 | G1251A | gGa | gCa | 255 | 256 | All | 0.000049 |
S | 1251 | G1251A | gGA | gCG | 1 | 256 | All | 0 |
S | 1251 | G1251V | gGa | gTa | 231 | 231 | B.1.617.2 | 0.00087 |
S | 1251 | G1251G | ggA | ggG | 222 | 225 | B.1.1.7 | 0.000199 |
S | 1251 | G1251G | ggA | ggC | 2 | 225 | B.1.1.7 | 0.000002 |
S | 1251 | G1251G | ggA | ggT | 1 | 225 | B.1.1.7 | 0.000001 |
S | 1251 | G1251V | gGa | gTa | 214 | 214 | B.1.1.7 | 0.000192 |
S | 1251 | G1251E | gGa | gAa | 199 | 199 | All | 0.000038 |
S | 1251 | G1251A | gGa | gCa | 193 | 193 | AY.44 | 0.001175 |
S | 1251 | G1251V | gGa | gTa | 174 | 174 | AY.4 | 0.000271 |
S | 1251 | G1251V | gGa | gTa | 152 | 152 | B.1.1.406 | 0.987013 |
S | 1251 | G1251del | GGA | --- | 92 | 92 | All | 0.000018 |
S | 1251 | G1251R | Gga | Aga | 76 | 80 | AY.25 | 0.000457 |
S | 1251 | G1251R | Gga | Cga | 4 | 80 | AY.25 | 0.000024 |
S | 1251 | G1251G | ggA | ggG | 66 | 67 | B.1.1 | 0.001197 |
S | 1251 | G1251G | ggA | ggC | 1 | 67 | B.1.1 | 0.000018 |
S | 1251 | G1251V | gGa | gTa | 65 | 65 | B.1.2 | 0.000572 |
S | 1251 | G1251V | gGa | gTa | 61 | 61 | B.1.1.284 | 0.006551 |
S | 1251 | G1251V | gGa | gTa | 54 | 54 | B.1 | 0.000495 |
S | 1251 | G1251V | gGa | gTa | 51 | 51 | AY.43 | 0.000226 |
S | 1251 | G1251V | gGa | gTa | 51 | 51 | AY.44 | 0.00031 |
S | 1251 | G1251V | gGa | gTa | 42 | 42 | B.1.526 | 0.000987 |
S | 1251 | G1251V | gGa | gTa | 40 | 40 | B.1.427 | 0.00202 |
S | 1251 | G1251del | GGA | --- | 39 | 39 | B.1.1.7 | 0.000035 |
S | 1251 | G1251V | gGa | gTa | 37 | 37 | AY.103 | 0.00023 |
S | 1251 | G1251R | Gga | Cga | 35 | 35 | AY.8 | 0.021212 |
S | 1251 | G1251E | gGa | gAa | 34 | 34 | B.1.1.7 | 0.00003 |
S | 1251 | G1251R | Gga | Aga | 33 | 33 | B.1.1.519 | 0.00131 |
S | 1251 | G1251A | gGa | gCa | 32 | 32 | B.1.1.7 | 0.000029 |
S | 1251 | G1251G | ggA | ggG | 30 | 31 | AY.25 | 0.00018 |
S | 1251 | G1251G | ggA | ggC | 1 | 31 | AY.25 | 0.000006 |
S | 1251 | G1251G | ggA | ggG | 30 | 30 | B.1.1.61 | 0.263158 |
S | 1251 | G1251E | gGa | gAa | 30 | 30 | B.1.617.2 | 0.000113 |
S | 1251 | G1251V | gGa | gTa | 28 | 28 | B.1.36 | 0.004085 |
S | 1251 | G1251R | Gga | Aga | 27 | 27 | AY.4 | 0.000042 |
S | 1251 | G1251V | gGa | gTa | 25 | 25 | B.1.1.526 | 0.088652 |
S | 1251 | G1251G | ggA | ggG | 24 | 24 | AY.99.2 | 0.002212 |
S | 1251 | G1251V | gGa | gTa | 23 | 23 | AY.98 | 0.001817 |
S | 1251 | G1251E | gGa | gAa | 22 | 22 | AY.4 | 0.000034 |
S | 1251 | G1251G | ggA | ggG | 20 | 21 | B.1.2 | 0.000176 |
S | 1251 | G1251G | ggA | ggT | 1 | 21 | B.1.2 | 0.000009 |
S | 1251 | G1251G | ggA | ggG | 20 | 20 | AY.23 | 0.001395 |
S | 1251 | G1251G | ggA | ggG | 17 | 20 | B.1.617.2 | 0.000064 |
S | 1251 | G1251G | ggA | ggC | 2 | 20 | B.1.617.2 | 0.000008 |
S | 1251 | G1251G | ggA | ggT | 1 | 20 | B.1.617.2 | 0.000004 |
S | 1251 | G1251R | Gga | Aga | 20 | 20 | Q.1 | 0.002527 |
S | 1251 | G1251V | gGa | gTa | 19 | 19 | AY.25 | 0.000114 |
S | 1251 | G1251V | gGa | gTa | 19 | 19 | AY.39 | 0.00047 |
S | 1251 | G1251V | gGa | gTa | 19 | 19 | AY.73 | 0.012641 |
S | 1251 | G1251del | GGA | --- | 18 | 18 | AY.4.5 | 0.001935 |
S | 1251 | G1251V | gGa | gTa | 18 | 18 | P.1.14 | 0.00086 |
S | 1251 | G1251G | ggA | ggG | 14 | 17 | AY.43 | 0.000062 |
S | 1251 | G1251G | ggA | ggT | 2 | 17 | AY.43 | 0.000009 |
S | 1251 | G1251G | ggA | ggC | 1 | 17 | AY.43 | 0.000004 |
S | 1251 | G1251E | gGa | gAa | 16 | 16 | AY.25 | 0.000096 |
S | 1251 | G1251V | gGa | gTa | 16 | 16 | AY.98.1 | 0.000775 |
S | 1251 | G1251V | gGa | gTa | 14 | 14 | AY.102 | 0.000371 |
S | 1251 | G1251R | Gga | Aga | 13 | 13 | AY.74 | 0.001503 |
S | 1251 | G1251R | Gga | Aga | 13 | 13 | B.1.577 | 0.008935 |
S | 1251 | G1251X | Gga | Tga | 11 | 11 | All | 0.000002 |
S | 1251 | G1251V | gGa | gTa | 11 | 11 | AY.119 | 0.000388 |
S | 1251 | G1251V | gGa | gTa | 11 | 11 | B.1.1.8 | 0.039427 |
S | 1251 | G1251G | ggA | ggG | 4 | 11 | B.1.177 | 0.000053 |
S | 1251 | G1251G | ggA | ggT | 4 | 11 | B.1.177 | 0.000053 |
S | 1251 | G1251G | ggA | ggC | 3 | 11 | B.1.177 | 0.00004 |
S | 1251 | G1251R | Gga | Aga | 11 | 11 | B.1.404 | 0.014323 |
S | 1251 | G1251V | gGa | gTa | 11 | 11 | B.1.637 | 0.000804 |
S | 1251 | G1251R | Gga | Aga | 11 | 11 | P.1 | 0.000173 |
S | 1251 | G1251V | gGa | gTa | 10 | 10 | AU.1 | 0.012658 |
S | 1251 | G1251G | ggA | ggG | 9 | 10 | AY.103 | 0.000056 |
S | 1251 | G1251G | ggA | ggT | 1 | 10 | AY.103 | 0.000006 |
S | 1251 | G1251E | gGa | gAa | 10 | 10 | AY.43 | 0.000044 |
S | 1251 | G1251V | gGa | gTa | 10 | 10 | B.1.1.519 | 0.000397 |
S | 1251 | G1251R | Gga | Aga | 10 | 10 | B.1.526 | 0.000235 |
S | 1251 | G1251V | gGa | gTa | 9 | 9 | AM.1 | 1 |
S | 1251 | G1251del | GGA | --- | 9 | 9 | B.1.177 | 0.000119 |
S | 1251 | G1251V | gGa | gTa | 9 | 9 | P.1 | 0.000142 |
S | 1251 | G1251E | gGa | gAa | 8 | 8 | AY.3.1 | 0.000682 |
S | 1251 | G1251V | gGa | gTa | 8 | 8 | AY.42 | 0.000322 |
S | 1251 | G1251R | Gga | Aga | 8 | 8 | AY.44 | 0.000049 |
S | 1251 | G1251G | ggA | ggG | 6 | 8 | B.1 | 0.000055 |
S | 1251 | G1251G | ggA | ggC | 2 | 8 | B.1 | 0.000018 |
S | 1251 | G1251V | gGa | gTa | 8 | 8 | B.1.620 | 0.007569 |
S | 1251 | G1251R | Gga | Aga | 7 | 7 | AY.117 | 0.000592 |
S | 1251 | G1251G | ggA | ggG | 3 | 7 | AY.20 | 0.000117 |
S | 1251 | G1251G | ggA | ggT | 3 | 7 | AY.20 | 0.000117 |
S | 1251 | G1251G | ggA | ggC | 1 | 7 | AY.20 | 0.000039 |
S | 1251 | G1251V | gGa | gTa | 7 | 7 | AY.9.2 | 0.000257 |
S | 1251 | G1251V | gGa | gTa | 7 | 7 | B.1.1.306 | 0.003069 |
S | 1251 | G1251V | gGa | gTa | 7 | 7 | W.2 | 0.033816 |
S | 1251 | G1251L | GGa | TTa | 6 | 6 | All | 0.000001 |
S | 1251 | G1251G | ggA | ggG | 6 | 6 | AY.27 | 0.000388 |
S | 1251 | G1251E | gGa | gAa | 6 | 6 | AY.27 | 0.000388 |
S | 1251 | G1251G | ggA | ggG | 5 | 6 | AY.39 | 0.000124 |
S | 1251 | G1251G | ggA | ggC | 1 | 6 | AY.39 | 0.000025 |
S | 1251 | G1251V | gGa | gTa | 6 | 6 | B.1.1 | 0.000109 |
S | 1251 | G1251G | ggA | ggG | 3 | 6 | B.1.1.28 | 0.000934 |
S | 1251 | G1251G | ggA | ggT | 3 | 6 | B.1.1.28 | 0.000934 |
S | 1251 | G1251R | Gga | Aga | 6 | 6 | B.1.1.291 | 0.004454 |
S | 1251 | G1251V | gGa | gTa | 6 | 6 | B.1.221 | 0.000426 |
S | 1251 | G1251R | Gga | Aga | 6 | 6 | B.1.243 | 0.000418 |
S | 1251 | G1251del1 | Gga | -ga | 4 | 5 | All | 0.000001 |
S | 1251 | G1251del1 | ggA | gg- | 1 | 5 | All | 0 |
S | 1251 | G1251R | Gga | Aga | 5 | 5 | AY.103 | 0.000031 |
S | 1251 | G1251G | ggA | ggG | 5 | 5 | AY.44 | 0.00003 |
S | 1251 | G1251R | Gga | Aga | 5 | 5 | AY.47 | 0.000156 |
S | 1251 | G1251V | gGa | gTa | 5 | 5 | AY.5 | 0.000103 |
S | 1251 | G1251G | ggA | ggG | 5 | 5 | AY.62 | 0.002179 |
S | 1251 | G1251E | gGa | gAa | 5 | 5 | B.1.1 | 0.000091 |
S | 1251 | G1251G | ggA | ggG | 5 | 5 | B.1.351 | 0.000149 |
S | 1251 | G1251R | Gga | Aga | 5 | 5 | B.1.351 | 0.000149 |
S | 1251 | G1251G | ggA | ggG | 5 | 5 | B.1.596 | 0.000436 |
S | 1251 | G1251V | gGa | gTa | 5 | 5 | B.1.596 | 0.000436 |
S | 1251 | G1251A | gGa | gCa | 5 | 5 | B.1.617.2 | 0.000019 |
S | 1251 | G1251R | Gga | Aga | 4 | 5 | B.1.617.2 | 0.000015 |
S | 1251 | G1251R | Gga | Cga | 1 | 5 | B.1.617.2 | 0.000004 |
S | 1251 | G1251V | gGa | gTa | 5 | 5 | B.1.621 | 0.000443 |
S | 1251 | G1251G | ggA | ggC | 3 | 5 | P.1 | 0.000047 |
S | 1251 | G1251G | ggA | ggG | 2 | 5 | P.1 | 0.000032 |
S | 1251 | G1251A | gGa | gCa | 4 | 4 | AY.39 | 0.000099 |
S | 1251 | G1251E | gGa | gAa | 4 | 4 | AY.5 | 0.000083 |
S | 1251 | G1251R | Gga | Aga | 4 | 4 | AY.5 | 0.000083 |
S | 1251 | G1251V | gGa | gTa | 4 | 4 | AY.6 | 0.000165 |
S | 1251 | G1251G | ggA | ggG | 4 | 4 | AY.71 | 0.0019 |
S | 1251 | G1251G | ggA | ggG | 4 | 4 | B.1.111 | 0.0047 |
S | 1251 | G1251V | gGa | gTa | 4 | 4 | B.1.177.73 | 0.002265 |
S | 1251 | G1251E | gGa | gAa | 4 | 4 | P.1 | 0.000063 |
S | 1251 | G1251V | gGa | gTa | 4 | 4 | R.1 | 0.00036 |
S | 1251 | G1251G | ggA | ggT | 2 | 3 | AY.102 | 0.000053 |
S | 1251 | G1251G | ggA | ggG | 1 | 3 | AY.102 | 0.000027 |
S | 1251 | G1251A | gGa | gCa | 3 | 3 | AY.103 | 0.000019 |
S | 1251 | G1251E | gGa | gAa | 3 | 3 | AY.103 | 0.000019 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.118 | 0.000188 |
S | 1251 | G1251G | ggA | ggG | 3 | 3 | AY.120.1 | 0.000963 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.20 | 0.000117 |
S | 1251 | G1251E | gGa | gAa | 3 | 3 | AY.23.1 | 0.001252 |
S | 1251 | G1251G | ggA | ggG | 3 | 3 | AY.24 | 0.001293 |
S | 1251 | G1251G | ggA | ggG | 3 | 3 | AY.3 | 0.00003 |
S | 1251 | G1251R | Gga | Aga | 3 | 3 | AY.39 | 0.000074 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.45 | 0.000365 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.46 | 0.000312 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.46.6 | 0.000217 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | AY.68 | 0.000821 |
S | 1251 | G1251E | gGa | gAa | 3 | 3 | AY.92 | 0.000862 |
S | 1251 | G1251G | ggA | ggG | 3 | 3 | AY.98 | 0.000237 |
S | 1251 | G1251G | ggA | ggG | 3 | 3 | B.1.1.317 | 0.001235 |
S | 1251 | G1251R | Gga | Aga | 3 | 3 | B.1.2 | 0.000026 |
S | 1251 | G1251E | gGa | gAa | 3 | 3 | B.1.2 | 0.000026 |
S | 1251 | G1251G | ggA | ggG | 3 | 3 | B.1.391 | 0.003382 |
S | 1251 | G1251A | gGa | gCa | 3 | 3 | B.1.396 | 0.002117 |
S | 1251 | G1251G | ggA | ggG | 3 | 3 | B.1.466.2 | 0.001174 |
S | 1251 | G1251E | gGa | gAa | 3 | 3 | B.1.561 | 0.001191 |
S | 1251 | G1251R | Gga | Aga | 3 | 3 | B.1.588 | 0.00273 |
S | 1251 | G1251L | GGa | TTa | 3 | 3 | B.1.617.2 | 0.000011 |
S | 1251 | G1251R | Gga | Cga | 3 | 3 | B.1.628 | 0.001057 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | B.6 | 0.00273 |
S | 1251 | G1251G | ggA | ggG | 2 | 3 | C.37 | 0.000232 |
S | 1251 | G1251G | ggA | ggC | 1 | 3 | C.37 | 0.000116 |
S | 1251 | G1251E | gGa | gAa | 3 | 3 | D.2 | 0.000225 |
S | 1251 | G1251V | gGa | gTa | 3 | 3 | D.2 | 0.000225 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | A | 0.000774 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.114 | 0.000462 |
S | 1251 | G1251G | ggA | ggG | 2 | 2 | AY.119 | 0.000071 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.13 | 0.000322 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.14 | 0.000176 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.16 | 0.000759 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.23 | 0.000139 |
S | 1251 | G1251E | gGa | gAa | 2 | 2 | AY.26 | 0.000057 |
S | 1251 | G1251R | Gga | Aga | 2 | 2 | AY.26 | 0.000057 |
S | 1251 | G1251E | gGa | gAa | 2 | 2 | AY.29 | 0.000032 |
S | 1251 | G1251G | ggA | ggG | 2 | 2 | AY.29 | 0.000032 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.29 | 0.000032 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.3 | 0.00002 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.3.1 | 0.000171 |
S | 1251 | G1251G | ggA | ggC | 1 | 2 | AY.30 | 0.000396 |
S | 1251 | G1251G | ggA | ggG | 1 | 2 | AY.30 | 0.000396 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.32 | 0.001065 |
S | 1251 | G1251G | ggA | ggC | 2 | 2 | AY.34 | 0.000194 |
S | 1251 | G1251E | gGa | gAa | 2 | 2 | AY.37 | 0.000632 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
S | 1251 | G1251G | ggA | ggG | 1 | 2 | AY.4.5 | 0.000107 |
S | 1251 | G1251G | ggA | ggC | 1 | 2 | AY.4.5 | 0.000107 |
S | 1251 | G1251G | ggA | ggT | 2 | 2 | AY.41 | 0.000588 |
S | 1251 | G1251R | Gga | Aga | 2 | 2 | AY.43 | 0.000009 |
S | 1251 | G1251G | ggA | ggT | 2 | 2 | AY.5 | 0.000041 |
S | 1251 | G1251E | gGa | gAa | 2 | 2 | AY.50 | 0.001599 |
S | 1251 | G1251G | ggA | ggG | 2 | 2 | AY.73 | 0.001331 |
S | 1251 | G1251E | gGa | gAa | 2 | 2 | AY.74 | 0.000231 |
S | 1251 | G1251R | Gga | Aga | 2 | 2 | AY.83 | 0.003448 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | AY.86 | 0.00166 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B | 0.000256 |
S | 1251 | G1251A | gGa | gCa | 1 | 2 | B.1 | 0.000009 |
S | 1251 | G1251A | gGA | gCG | 1 | 2 | B.1 | 0.000009 |
S | 1251 | G1251A | gGa | gCa | 2 | 2 | B.1.1 | 0.000036 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.1.214 | 0.000111 |
S | 1251 | G1251E | gGa | gAa | 2 | 2 | B.1.1.214 | 0.000111 |
S | 1251 | G1251R | Gga | Aga | 2 | 2 | B.1.1.284 | 0.000215 |
S | 1251 | G1251del1 | ggA | gg- | 1 | 2 | B.1.1.7 | 0.000001 |
S | 1251 | G1251del1 | Gga | -ga | 1 | 2 | B.1.1.7 | 0.000001 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.160 | 0.000062 |
S | 1251 | G1251E | gGa | gAa | 2 | 2 | B.1.177 | 0.000026 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.177 | 0.000026 |
S | 1251 | G1251del | GGA | --- | 2 | 2 | B.1.177.4 | 0.000422 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.177.81 | 0.000379 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.237 | 0.00995 |
S | 1251 | G1251G | ggA | ggG | 2 | 2 | B.1.258 | 0.000133 |
S | 1251 | G1251G | ggA | ggG | 2 | 2 | B.1.332 | 0.006993 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.429 | 0.000047 |
S | 1251 | G1251G | ggA | ggG | 2 | 2 | B.1.429 | 0.000047 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.525 | 0.000226 |
S | 1251 | G1251V | gGa | gTa | 2 | 2 | B.1.575 | 0.000607 |
S | 1251 | G1251del | GGA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 1251 | G1251G | ggA | ggG | 2 | 2 | B.1.621 | 0.000177 |
S | 1251 | G1251R | Gga | Aga | 2 | 2 | B.1.637 | 0.000146 |
S | 1251 | G1251X | Gga | Tga | 2 | 2 | D.2 | 0.00015 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | A | 0.000387 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | A.1 | 0.000282 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AD.2 | 0.000219 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AM.4 | 0.003571 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.100 | 0.000046 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.100 | 0.000046 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.100 | 0.000046 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.101 | 0.00049 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.102 | 0.000027 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | AY.103 | 0.000006 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.108 | 0.001103 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.108 | 0.001103 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.109 | 0.00074 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.111 | 0.000183 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.111 | 0.000183 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.111 | 0.000183 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.113 | 0.000142 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | AY.114 | 0.000231 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.117 | 0.000085 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.118 | 0.000063 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.119 | 0.000035 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.12 | 0.000316 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | AY.120 | 0.000037 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.120 | 0.000037 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | AY.120 | 0.000037 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.120 | 0.000037 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | AY.121 | 0.000135 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.16.1 | 0.00047 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.16.1 | 0.00047 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | AY.23 | 0.00007 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.23 | 0.00007 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | AY.25 | 0.000006 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.26 | 0.000028 |
S | 1251 | G1251del1 | Gga | -ga | 1 | 1 | AY.3 | 0.00001 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.3.1 | 0.000085 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.32 | 0.000532 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.33 | 0.000067 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | AY.35 | 0.000233 |
S | 1251 | G1251L | GGa | TTa | 1 | 1 | AY.39 | 0.000025 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.39 | 0.000025 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | AY.39.1 | 0.00004 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | AY.4 | 0.000002 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | AY.4 | 0.000002 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.4.2 | 0.000022 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | AY.4.2 | 0.000022 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.4.3 | 0.000842 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.42 | 0.00004 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.42 | 0.00004 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.42 | 0.00004 |
S | 1251 | G1251L | GGa | TTa | 1 | 1 | AY.43 | 0.000004 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.44 | 0.000006 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | AY.44 | 0.000006 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | AY.45 | 0.000122 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.46.6 | 0.000072 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | AY.47 | 0.000031 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.48 | 0.000465 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | AY.5 | 0.000021 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.5.3 | 0.000337 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.52 | 0.000814 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.54 | 0.000095 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.62 | 0.000436 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.65 | 0.000533 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.65 | 0.000533 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.69 | 0.000187 |
S | 1251 | G1251G | ggA | ggT | 1 | 1 | AY.7 | 0.000196 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.72 | 0.001361 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.74 | 0.000116 |
S | 1251 | G1251R | Gga | Cga | 1 | 1 | AY.75 | 0.000056 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.75 | 0.000056 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.79 | 0.001211 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | AY.81 | 0.001992 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.84 | 0.000437 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.85 | 0.000427 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.9 | 0.000068 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | AY.9 | 0.000068 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | AY.9.1 | 0.000084 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.90 | 0.000684 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.91 | 0.00073 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AY.92 | 0.000287 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | AY.94 | 0.000443 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | AY.98 | 0.000079 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | AY.98.1 | 0.000048 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | AY.99.2 | 0.000092 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | AZ.2 | 0.000821 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | B | 0.000128 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1 | 0.000009 |
S | 1251 | G1251del1 | Gga | -ga | 1 | 1 | B.1 | 0.000009 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | B.1 | 0.000009 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1 | 0.000009 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.1.152 | 0.04 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.1.192 | 0.002309 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.1.220 | 0.001859 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.1.222 | 0.000204 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | B.1.1.28 | 0.000311 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.1.28 | 0.000311 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.1.301 | 0.001179 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.1.306 | 0.000438 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.1.306 | 0.000438 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.1.318 | 0.000302 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.1.368 | 0.003086 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.1.372 | 0.000689 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.1.409 | 0.002833 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.1.518 | 0.006329 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.106 | 0.03125 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.112 | 0.005181 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.160 | 0.000031 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.160 | 0.000031 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.177 | 0.000013 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.177.12 | 0.000152 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.177.12 | 0.000152 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.177.19 | 0.001431 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.177.21 | 0.000076 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.177.43 | 0.001477 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | B.1.177.44 | 0.000519 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.177.57 | 0.000281 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.177.72 | 0.00339 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.177.75 | 0.001041 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.177.82 | 0.000477 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.177.82 | 0.000477 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.177.87 | 0.000728 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.214.2 | 0.0006 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.221 | 0.000071 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.221.1 | 0.002907 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.225 | 0.015385 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.23 | 0.006061 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.233 | 0.014085 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.234 | 0.000132 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.234 | 0.000132 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.239 | 0.001221 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.240 | 0.000216 |
S | 1251 | G1251del1 | Gga | -ga | 1 | 1 | B.1.243 | 0.00007 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.243 | 0.00007 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.258 | 0.000067 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.260 | 0.003344 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.264 | 0.012346 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.336 | 0.002439 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.349 | 0.000715 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.351 | 0.00003 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.351 | 0.00003 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.36.22 | 0.001208 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.36.31 | 0.001751 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.369 | 0.000285 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.377 | 0.004566 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.389 | 0.001002 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.396 | 0.000706 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.399 | 0.001934 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 1251 | G1251G | ggA | ggT | 1 | 1 | B.1.416 | 0.001269 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.1.427 | 0.00005 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.427 | 0.00005 |
S | 1251 | G1251L | GGa | TTa | 1 | 1 | B.1.427 | 0.00005 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.429 | 0.000024 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.466.2 | 0.000391 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.480 | 0.002488 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | B.1.506 | 0.02381 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | B.1.509 | 0.000866 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | B.1.523 | 0.002451 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | B.1.525 | 0.000113 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.526 | 0.000024 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.549 | 0.007194 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.565 | 0.00081 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.1.576 | 0.000907 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.580 | 0.004065 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.582 | 0.000491 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.588 | 0.00091 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.595 | 0.000261 |
S | 1251 | G1251X | Gga | Tga | 1 | 1 | B.1.596 | 0.000087 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.621.1 | 0.000506 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.1.623 | 0.000536 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | B.1.630 | 0.005236 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | B.39 | 0.002331 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | B.6.6 | 0.000889 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | B.61 | 0.005747 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | C.36 | 0.000911 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | C.36.3 | 0.000567 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | D.2 | 0.000075 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | P.1 | 0.000016 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | P.1.10 | 0.000269 |
S | 1251 | G1251E | gGa | gAa | 1 | 1 | P.1.14 | 0.000048 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | P.1.15 | 0.000232 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | P.1.15 | 0.000232 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | P.1.16 | 0.000374 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | P.1.4 | 0.000977 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | P.1.7 | 0.000319 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | P.2 | 0.000187 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | Q.1 | 0.000126 |
S | 1251 | G1251G | ggA | ggC | 1 | 1 | Q.2 | 0.000613 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | Q.4 | 0.000455 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | Q.7 | 0.001111 |
S | 1251 | G1251G | ggA | ggG | 1 | 1 | Q.8 | 0.000165 |
S | 1251 | G1251V | gGa | gTa | 1 | 1 | Q.8 | 0.000165 |
S | 1251 | G1251A | gGa | gCa | 1 | 1 | Q.8 | 0.000165 |
S | 1251 | G1251R | Gga | Aga | 1 | 1 | Q.8 | 0.000165 |
S | 1251 | G1251del | GGA | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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