CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1250

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1250C1250FnonsyntGttTt27712771125310-25312
S1250C1250YnonsyntGttAt1741730.99425325310-25312
S1250C1250YnonsyntGTtAC17410.0057471325310-25312
S1250C1250CsyntgTtgC169169125310-25312
S1250C1250deldelTGT---9898125310-25312
S1250C1250SnonsynTgtAgt45310.68888925310-25312
S1250C1250SnonsyntGttCt45140.31111125310-25312
S1250C1250WnonsyntgTtgG4343125310-25312
S1250C1250RnonsynTgtCgt26240.92307725310-25312
S1250C1250RnonsynTgTCgC2610.038461525310-25312
S1250C1250RnonsynTgTAgA2610.038461525310-25312
S1250C1250GnonsynTgtGgt1313125310-25312
S1250C1250XnonsyntgTtgA44125310-25312
S1250C1250HnonsynTGtCAt320.66666725310-25312
S1250C1250HnonsynTGTCAC310.33333325310-25312
S1250C1250LnonsynTGtCTt22125310-25312
S1250C1250del2delTGT--G210.525310-25312
S1250C1250del2delTGt--t210.525310-25312
S1250C1250del1delTgt-gt210.525310-25312
S1250C1250del1deltGTt-C210.525310-25312
S1250C1250NnonsynTGtAAt11125310-25312

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1250C1250FtGttTt27712771All0.00053
S1250C1250FtGttTt532532AY.40.000828
S1250C1250FtGttTt295295B.1.1.70.000264
S1250C1250FtGttTt272272P.1.140.013002
S1250C1250YtGttAt173174All0.000033
S1250C1250YtGTtAC1174All0
S1250C1250CtgTtgC169169All0.000032
S1250C1250FtGttTt169169B.1.1.2400.793427
S1250C1250FtGttTt129129B.1.1600.004023
S1250C1250FtGttTt122122AY.1190.004308
S1250C1250FtGttTt107107B.1.617.20.000403
S1250C1250delTGT---9898All0.000019
S1250C1250FtGttTt9494AY.340.009115
S1250C1250FtGttTt6868AY.430.000301
S1250C1250FtGttTt6363AY.330.004207
S1250C1250CtgTtgC5252B.1.1.580.27957
S1250C1250FtGttTt4949AY.1030.000304
S1250C1250FtGttTt4848B.1.177.870.034934
S1250C1250STgtAgt3145All0.000006
S1250C1250StGttCt1445All0.000003
S1250C1250WtgTtgG4343All0.000008
S1250C1250FtGttTt4343B.1.351.50.025779
S1250C1250delTGT---4242B.1.1.70.000038
S1250C1250FtGttTt3838B.1.2670.703704
S1250C1250FtGttTt3333AY.440.000201
S1250C1250YtGttAt3030B.1.1.70.000027
S1250C1250FtGttTt2929B.1.4040.03776
S1250C1250FtGttTt2828P.10.000441
S1250C1250RTgtCgt2426All0.000005
S1250C1250RTgTCgC126All0
S1250C1250RTgTAgA126All0
S1250C1250FtGttTt2424AY.1020.000636
S1250C1250FtGttTt2424AY.250.000144
S1250C1250YtGttAt2222AY.40.000034
S1250C1250FtGttTt2222B.10.000202
S1250C1250FtGttTt2222B.1.2580.001464
S1250C1250FtGttTt2121AY.390.000519
S1250C1250CtgTtgC2020B.1.1.70.000018
S1250C1250FtGttTt1919AY.360.002816
S1250C1250STgtAgt1819B.1.1.70.000016
S1250C1250StGttCt119B.1.1.70.000001
S1250C1250FtGttTt1919B.1.1770.00025
S1250C1250delTGT---1818AY.4.50.001935
S1250C1250FtGttTt1717C.370.001973
S1250C1250FtGttTt1616AY.290.000252
S1250C1250FtGttTt1616B.1.20.000141
S1250C1250FtGttTt1515B.1.10.000272
S1250C1250FtGttTt1515B.1.621.10.007587
S1250C1250CtgTtgC1414AY.250.000084
S1250C1250FtGttTt1414AY.30.000139
S1250C1250YtGttAt1414AY.9.20.000514
S1250C1250FtGttTt1414B.1.36.100.066986
S1250C1250GTgtGgt1313All0.000002
S1250C1250YtGttAt1313AY.9.10.001088
S1250C1250FtGttTt1313B.1.1.2980.011207
S1250C1250FtGttTt1212B.1.2340.001583
S1250C1250FtGttTt1212B.1.4270.000606
S1250C1250WtgTtgG1111AY.1020.000292
S1250C1250YtGttAt1111AY.440.000067
S1250C1250FtGttTt1111AY.60.000452
S1250C1250WtgTtgG1111B.1.617.20.000041
S1250C1250delTGT---99B.1.1770.000119
S1250C1250FtGttTt99P.1.70.002874
S1250C1250FtGttTt88AY.1180.000501
S1250C1250FtGttTt88AY.230.000558
S1250C1250YtGttAt88AY.250.000048
S1250C1250FtGttTt88AY.4.20.000174
S1250C1250YtGttAt88B.1.1.250.004548
S1250C1250FtGttTt88B.1.1.280.00249
S1250C1250FtGttTt88B.1.1.5190.000318
S1250C1250FtGttTt88B.1.5260.000188
S1250C1250FtGttTt77AY.1060.002344
S1250C1250GTgtGgt77AY.30.00007
S1250C1250FtGttTt77AY.420.000282
S1250C1250FtGttTt77B.1.1280.004447
S1250C1250CtgTtgC77B.1.20.000062
S1250C1250CtgTtgC77B.1.617.20.000026
S1250C1250YtGttAt77B.1.617.20.000026
S1250C1250CtgTtgC66AY.1030.000037
S1250C1250YtGttAt66AY.4.20.00013
S1250C1250CtgTtgC66AY.430.000027
S1250C1250STgtAgt66AY.46.50.00119
S1250C1250FtGttTt66AY.610.000629
S1250C1250FtGttTt66AY.980.000474
S1250C1250CtgTtgC66B.1.1.3170.00247
S1250C1250FtGttTt66B.1.177.380.0625
S1250C1250FtGttTt66B.1.3510.000178
S1250C1250FtGttTt66B.400.002186
S1250C1250FtGttTt66P.1.80.028708
S1250C1250RTgtCgt55AY.1130.000712
S1250C1250FtGttTt55AY.120.00158
S1250C1250FtGttTt55AY.260.000142
S1250C1250CtgTtgC55AY.30.00005
S1250C1250FtGttTt55AY.3.10.000426
S1250C1250STgtAgt55AY.40.000008
S1250C1250YtGttAt55AY.430.000022
S1250C1250FtGttTt55AY.450.000608
S1250C1250FtGttTt55AY.50.000103
S1250C1250GTgtGgt55B.1.1.70.000004
S1250C1250FtGttTt55B.1.4290.000118
S1250C1250XtgTtgA44All0.000001
S1250C1250FtGttTt44AY.1000.000184
S1250C1250FtGttTt44AY.1070.001864
S1250C1250FtGttTt44AY.1080.00441
S1250C1250FtGttTt44AY.1200.000149
S1250C1250YtGttAt44AY.330.000267
S1250C1250StGttCt44AY.340.000388
S1250C1250WtgTtgG44AY.390.000099
S1250C1250CtgTtgC44AY.40.000006
S1250C1250CtgTtgC44AY.440.000024
S1250C1250FtGttTt44AY.920.001149
S1250C1250FtGttTt44AY.930.001092
S1250C1250FtGttTt44B.1.1.1410.008048
S1250C1250FtGttTt44B.1.1.2860.011594
S1250C1250RTgtCgt44B.1.1.70.000004
S1250C1250FtGttTt44B.1.177.240.005181
S1250C1250CtgTtgC44B.1.2340.000528
S1250C1250StGttCt44B.1.5260.000094
S1250C1250FtGttTt44B.1.5960.000349
S1250C1250FtGttTt44B.1.617.10.000516
S1250C1250FtGttTt44B.1.6210.000354
S1250C1250FtGttTt44C.36.30.002269
S1250C1250FtGttTt44P.1.170.000647
S1250C1250WtgTtgG44R.10.00036
S1250C1250FtGttTt33A.2.5.20.004717
S1250C1250HTGtCAt23All0
S1250C1250HTGTCAC13All0
S1250C1250FtGttTt33AY.1210.000406
S1250C1250FtGttTt33AY.200.000117
S1250C1250CtgTtgC33AY.7.10.000338
S1250C1250FtGttTt33AY.700.000626
S1250C1250FtGttTt33AY.9.10.000251
S1250C1250FtGttTt33AY.9.20.00011
S1250C1250FtGttTt33B.1.1.4860.004732
S1250C1250YtGttAt33B.1.20.000026
S1250C1250RTgtCgt33B.1.20.000026
S1250C1250FtGttTt33B.1.351.20.000908
S1250C1250FtGttTt33B.1.36.290.001552
S1250C1250FtGttTt33B.1.6200.002838
S1250C1250YtGttAt33P.10.000047
S1250C1250RTgtCgt120.055556
S1250C1250YtGttAt120.055556
S1250C1250YtGTtAC120.055556
S1250C1250RTgTCgC120.055556
S1250C1250HTGTCAC120.055556
S1250C1250HTGtCAt120.055556
S1250C1250CtgTtgC22A.10.000564
S1250C1250FtGttTt22A.2.50.000998
S1250C1250FtGttTt22A.2.5.30.020619
S1250C1250LTGtCTt22All0
S1250C1250del2TGt--t12All0
S1250C1250del1tGTt-C12All0
S1250C1250del2TGT--G12All0
S1250C1250del1Tgt-gt12All0
S1250C1250WtgTtgG22AY.1030.000012
S1250C1250FtGttTt22AY.1170.000169
S1250C1250YtGttAt22AY.1170.000169
S1250C1250CtgTtgC22AY.120.000632
S1250C1250CtgTtgC22AY.200.000078
S1250C1250YtGttAt22AY.230.000139
S1250C1250FtGttTt22AY.29.10.000441
S1250C1250WtgTtgG22AY.30.00002
S1250C1250YtGttAt22AY.30.00002
S1250C1250FtGttTt22AY.300.000791
S1250C1250YtGttAt22AY.390.000049
S1250C1250CtgTtgC22AY.390.000049
S1250C1250FtGttTt22AY.46.50.000397
S1250C1250FtGttTt22AY.46.60.000144
S1250C1250FtGttTt22AY.690.000373
S1250C1250FtGttTt22AY.98.10.000097
S1250C1250FtGttTt22AY.99.20.000184
S1250C1250FtGttTt22B0.000256
S1250C1250YtGttAt22B.10.000018
S1250C1250CtgTtgC22B.1.10.000036
S1250C1250FtGttTt22B.1.1.2220.000408
S1250C1250FtGttTt22B.1.1.2300.018349
S1250C1250FtGttTt22B.1.1.250.001137
S1250C1250YtGttAt22B.1.160.160.001859
S1250C1250FtGttTt22B.1.160.280.005848
S1250C1250CtgTtgC22B.1.1770.000026
S1250C1250delTGT---22B.1.177.40.000422
S1250C1250FtGttTt22B.1.177.810.000379
S1250C1250FtGttTt22B.1.2430.000139
S1250C1250YtGttAt22B.1.3110.000549
S1250C1250XtgTtgA22B.1.3510.000059
S1250C1250FtGttTt22B.1.36.160.002849
S1250C1250FtGttTt22B.1.438.10.000215
S1250C1250YtGttAt22B.1.5170.000854
S1250C1250FtGttTt22B.1.5250.000226
S1250C1250YtGttAt22B.1.5260.000047
S1250C1250FtGttTt22B.1.5640.000852
S1250C1250FtGttTt22B.1.5760.001813
S1250C1250delTGT---22B.1.617.20.000008
S1250C1250FtGttTt22B.1.6230.001073
S1250C1250FtGttTt22B.1.9.50.011364
S1250C1250YtGttAt22P.1.140.000096
S1250C1250FtGttTt22P.20.000373
S1250C1250FtGttTt22Q.30.00029
S1250C1250CtgTtgC110.055556
S1250C1250FtGttTt11A0.000387
S1250C1250YtGttAt11A.10.000282
S1250C1250FtGttTt11A.20.000662
S1250C1250CtgTtgC11A.23.10.000704
S1250C1250FtGttTt11AE.50.018519
S1250C1250NTGtAAt11All0
S1250C1250CtgTtgC11AY.1020.000027
S1250C1250YtGttAt11AY.1030.000006
S1250C1250FtGttTt11AY.1050.000643
S1250C1250CtgTtgC11AY.1080.001103
S1250C1250WtgTtgG11AY.1080.001103
S1250C1250CtgTtgC11AY.1100.000113
S1250C1250FtGttTt11AY.1160.000287
S1250C1250RTgtCgt11AY.1170.000085
S1250C1250CtgTtgC11AY.1180.000063
S1250C1250YtGttAt11AY.1190.000035
S1250C1250delTGT---11AY.1200.000037
S1250C1250FtGttTt11AY.120.20.001285
S1250C1250CtgTtgC11AY.140.000088
S1250C1250FtGttTt11AY.160.00038
S1250C1250FtGttTt11AY.16.10.00047
S1250C1250FtGttTt11AY.190.00114
S1250C1250WtgTtgG11AY.250.000006
S1250C1250GTgtGgt11AY.250.000006
S1250C1250delTGT---11AY.250.000006
S1250C1250WtgTtgG11AY.270.000065
S1250C1250FtGttTt11AY.350.000233
S1250C1250FtGttTt11AY.370.000316
S1250C1250FtGttTt11AY.380.000499
S1250C1250RTgtCgt11AY.390.000025
S1250C1250FtGttTt11AY.39.10.00004
S1250C1250FtGttTt11AY.39.20.001541
S1250C1250delTGT---11AY.40.000002
S1250C1250RTgtCgt11AY.40.000002
S1250C1250STgtAgt11AY.4.20.000022
S1250C1250CtgTtgC11AY.4.20.000022
S1250C1250YtGttAt11AY.4.50.000107
S1250C1250YtGttAt11AY.420.00004
S1250C1250StGttCt11AY.420.00004
S1250C1250del2TGT--G11AY.440.000006
S1250C1250HTGtCAt11AY.440.000006
S1250C1250WtgTtgG11AY.440.000006
S1250C1250YtGttAt11AY.450.000122
S1250C1250FtGttTt11AY.470.000031
S1250C1250del1tGTt-C11AY.480.000465
S1250C1250delTGT---11AY.50.000021
S1250C1250CtgTtgC11AY.50.000021
S1250C1250FtGttTt11AY.5.30.000337
S1250C1250FtGttTt11AY.5.40.000277
S1250C1250FtGttTt11AY.520.000814
S1250C1250FtGttTt11AY.540.000095
S1250C1250CtgTtgC11AY.540.000095
S1250C1250FtGttTt11AY.550.000917
S1250C1250delTGT---11AY.60.000041
S1250C1250FtGttTt11AY.640.000595
S1250C1250FtGttTt11AY.680.000274
S1250C1250FtGttTt11AY.7.10.000113
S1250C1250FtGttTt11AY.710.000475
S1250C1250FtGttTt11AY.730.000665
S1250C1250FtGttTt11AY.750.000056
S1250C1250FtGttTt11AY.75.10.00018
S1250C1250FtGttTt11AY.760.004831
S1250C1250FtGttTt11AY.80.000606
S1250C1250delTGT---11AY.810.001992
S1250C1250del2TGt--t11AY.90.000068
S1250C1250CtgTtgC11AY.9.20.000037
S1250C1250XtgTtgA11B0.000128
S1250C1250RTgtCgt11B.10.000009
S1250C1250WtgTtgG11B.10.000009
S1250C1250YtGttAt11B.1.10.000018
S1250C1250RTgtCgt11B.1.10.000018
S1250C1250FtGttTt11B.1.1.10.000327
S1250C1250FtGttTt11B.1.1.1870.00885
S1250C1250FtGttTt11B.1.1.2320.001815
S1250C1250RTgtCgt11B.1.1.2410.00207
S1250C1250delTGT---11B.1.1.3010.001179
S1250C1250FtGttTt11B.1.1.3050.003861
S1250C1250FtGttTt11B.1.1.3060.000438
S1250C1250FtGttTt11B.1.1.3290.003846
S1250C1250FtGttTt11B.1.1.330.000421
S1250C1250FtGttTt11B.1.1.3510.002793
S1250C1250CtgTtgC11B.1.1.3680.003086
S1250C1250FtGttTt11B.1.1.3690.000446
S1250C1250delTGT---11B.1.1.370.000193
S1250C1250FtGttTt11B.1.1.3940.02439
S1250C1250RTgtCgt11B.1.1.4090.002833
S1250C1250YtGttAt11B.1.1.5190.00004
S1250C1250FtGttTt11B.1.1.5210.005348
S1250C1250LTGtCTt11B.1.1.70.000001
S1250C1250WtgTtgG11B.1.1.70.000001
S1250C1250delTGT---11B.1.1600.000031
S1250C1250YtGttAt11B.1.1600.000031
S1250C1250delTGT---11B.1.160.230.004831
S1250C1250YtGttAt11B.1.160.320.004292
S1250C1250del1Tgt-gt11B.1.1770.000013
S1250C1250XtgTtgA11B.1.1770.000013
S1250C1250NTGtAAt11B.1.1770.000013
S1250C1250delTGT---11B.1.177.100.000878
S1250C1250CtgTtgC11B.1.177.150.000631
S1250C1250delTGT---11B.1.177.170.000821
S1250C1250delTGT---11B.1.177.180.00116
S1250C1250delTGT---11B.1.177.190.001431
S1250C1250FtGttTt11B.1.177.210.000076
S1250C1250delTGT---11B.1.177.540.000606
S1250C1250delTGT---11B.1.177.760.002494
S1250C1250FtGttTt11B.1.2100.002132
S1250C1250YtGttAt11B.1.2210.000071
S1250C1250FtGttTt11B.1.2210.000071
S1250C1250delTGT---11B.1.221.10.002907
S1250C1250CtgTtgC11B.1.221.40.004167
S1250C1250delTGT---11B.1.230.006061
S1250C1250FtGttTt11B.1.2320.000537
S1250C1250FtGttTt11B.1.2400.000216
S1250C1250YtGttAt11B.1.2430.00007
S1250C1250FtGttTt11B.1.258.70.001912
S1250C1250FtGttTt11B.1.2930.0125
S1250C1250FtGttTt11B.1.3400.004292
S1250C1250FtGttTt11B.1.360.000146
S1250C1250delTGT---11B.1.36.180.00042
S1250C1250FtGttTt11B.1.3690.000285
S1250C1250StGttCt11B.1.3850.010638
S1250C1250delTGT---11B.1.3890.001002
S1250C1250YtGttAt11B.1.4000.000429
S1250C1250delTGT---11B.1.4090.000781
S1250C1250FtGttTt11B.1.4200.010417
S1250C1250RTgtCgt11B.1.4270.00005
S1250C1250LTGtCTt11B.1.4270.00005
S1250C1250WtgTtgG11B.1.438.10.000107
S1250C1250WtgTtgG11B.1.4620.007246
S1250C1250FtGttTt11B.1.4700.001404
S1250C1250delTGT---11B.1.5250.000113
S1250C1250FtGttTt11B.1.5580.004566
S1250C1250YtGttAt11B.1.5640.000426
S1250C1250FtGttTt11B.1.5650.00081
S1250C1250FtGttTt11B.1.5950.000261
S1250C1250YtGttAt11B.1.5960.000087
S1250C1250StGttCt11B.1.5960.000087
S1250C1250RTgtCgt11B.1.5960.000087
S1250C1250CtgTtgC11B.1.6090.000479
S1250C1250CtgTtgC11B.1.617.10.000129
S1250C1250RTgTAgA11B.1.617.20.000004
S1250C1250StGttCt11B.1.617.20.000004
S1250C1250FtGttTt11B.1.6220.012987
S1250C1250CtgTtgC11B.1.6300.005236
S1250C1250YtGttAt11B.1.6320.006711
S1250C1250CtgTtgC11B.3.10.001658
S1250C1250RTgtCgt11B.610.005747
S1250C1250FtGttTt11C.350.000774
S1250C1250YtGttAt11D.20.000075
S1250C1250FtGttTt11D.20.000075
S1250C1250RTgtCgt11D.20.000075
S1250C1250STgtAgt11D.20.000075
S1250C1250FtGttTt11D.30.005917
S1250C1250WtgTtgG11N.50.001767
S1250C1250delTGT---11P.10.000016
S1250C1250CtgTtgC11P.10.000016
S1250C1250YtGttAt11P.1.100.000269
S1250C1250StGttCt11P.1.140.000048
S1250C1250delTGT---11P.1.150.000232
S1250C1250FtGttTt11P.1.150.000232
S1250C1250FtGttTt11P.1.17.10.000875
S1250C1250FtGttTt11P.30.001595
S1250C1250FtGttTt11Q.10.000126
S1250C1250FtGttTt11Q.80.000165
S1250C1250delTGT---11U.30.003861