CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1250 | C1250F | nonsyn | tGt | tTt | 2771 | 2771 | 1 | 25310-25312 | |
S | 1250 | C1250Y | nonsyn | tGt | tAt | 174 | 173 | 0.994253 | 25310-25312 | |
S | 1250 | C1250Y | nonsyn | tGT | tAC | 174 | 1 | 0.00574713 | 25310-25312 | |
S | 1250 | C1250C | syn | tgT | tgC | 169 | 169 | 1 | 25310-25312 | |
S | 1250 | C1250del | del | TGT | --- | 98 | 98 | 1 | 25310-25312 | |
S | 1250 | C1250S | nonsyn | Tgt | Agt | 45 | 31 | 0.688889 | 25310-25312 | |
S | 1250 | C1250S | nonsyn | tGt | tCt | 45 | 14 | 0.311111 | 25310-25312 | |
S | 1250 | C1250W | nonsyn | tgT | tgG | 43 | 43 | 1 | 25310-25312 | |
S | 1250 | C1250R | nonsyn | Tgt | Cgt | 26 | 24 | 0.923077 | 25310-25312 | |
S | 1250 | C1250R | nonsyn | TgT | CgC | 26 | 1 | 0.0384615 | 25310-25312 | |
S | 1250 | C1250R | nonsyn | TgT | AgA | 26 | 1 | 0.0384615 | 25310-25312 | |
S | 1250 | C1250G | nonsyn | Tgt | Ggt | 13 | 13 | 1 | 25310-25312 | |
S | 1250 | C1250X | nonsyn | tgT | tgA | 4 | 4 | 1 | 25310-25312 | |
S | 1250 | C1250H | nonsyn | TGt | CAt | 3 | 2 | 0.666667 | 25310-25312 | |
S | 1250 | C1250H | nonsyn | TGT | CAC | 3 | 1 | 0.333333 | 25310-25312 | |
S | 1250 | C1250L | nonsyn | TGt | CTt | 2 | 2 | 1 | 25310-25312 | |
S | 1250 | C1250del2 | del | TGT | --G | 2 | 1 | 0.5 | 25310-25312 | |
S | 1250 | C1250del2 | del | TGt | --t | 2 | 1 | 0.5 | 25310-25312 | |
S | 1250 | C1250del1 | del | Tgt | -gt | 2 | 1 | 0.5 | 25310-25312 | |
S | 1250 | C1250del1 | del | tGT | t-C | 2 | 1 | 0.5 | 25310-25312 | |
S | 1250 | C1250N | nonsyn | TGt | AAt | 1 | 1 | 1 | 25310-25312 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1250 | C1250F | tGt | tTt | 2771 | 2771 | All | 0.00053 |
S | 1250 | C1250F | tGt | tTt | 532 | 532 | AY.4 | 0.000828 |
S | 1250 | C1250F | tGt | tTt | 295 | 295 | B.1.1.7 | 0.000264 |
S | 1250 | C1250F | tGt | tTt | 272 | 272 | P.1.14 | 0.013002 |
S | 1250 | C1250Y | tGt | tAt | 173 | 174 | All | 0.000033 |
S | 1250 | C1250Y | tGT | tAC | 1 | 174 | All | 0 |
S | 1250 | C1250C | tgT | tgC | 169 | 169 | All | 0.000032 |
S | 1250 | C1250F | tGt | tTt | 169 | 169 | B.1.1.240 | 0.793427 |
S | 1250 | C1250F | tGt | tTt | 129 | 129 | B.1.160 | 0.004023 |
S | 1250 | C1250F | tGt | tTt | 122 | 122 | AY.119 | 0.004308 |
S | 1250 | C1250F | tGt | tTt | 107 | 107 | B.1.617.2 | 0.000403 |
S | 1250 | C1250del | TGT | --- | 98 | 98 | All | 0.000019 |
S | 1250 | C1250F | tGt | tTt | 94 | 94 | AY.34 | 0.009115 |
S | 1250 | C1250F | tGt | tTt | 68 | 68 | AY.43 | 0.000301 |
S | 1250 | C1250F | tGt | tTt | 63 | 63 | AY.33 | 0.004207 |
S | 1250 | C1250C | tgT | tgC | 52 | 52 | B.1.1.58 | 0.27957 |
S | 1250 | C1250F | tGt | tTt | 49 | 49 | AY.103 | 0.000304 |
S | 1250 | C1250F | tGt | tTt | 48 | 48 | B.1.177.87 | 0.034934 |
S | 1250 | C1250S | Tgt | Agt | 31 | 45 | All | 0.000006 |
S | 1250 | C1250S | tGt | tCt | 14 | 45 | All | 0.000003 |
S | 1250 | C1250W | tgT | tgG | 43 | 43 | All | 0.000008 |
S | 1250 | C1250F | tGt | tTt | 43 | 43 | B.1.351.5 | 0.025779 |
S | 1250 | C1250del | TGT | --- | 42 | 42 | B.1.1.7 | 0.000038 |
S | 1250 | C1250F | tGt | tTt | 38 | 38 | B.1.267 | 0.703704 |
S | 1250 | C1250F | tGt | tTt | 33 | 33 | AY.44 | 0.000201 |
S | 1250 | C1250Y | tGt | tAt | 30 | 30 | B.1.1.7 | 0.000027 |
S | 1250 | C1250F | tGt | tTt | 29 | 29 | B.1.404 | 0.03776 |
S | 1250 | C1250F | tGt | tTt | 28 | 28 | P.1 | 0.000441 |
S | 1250 | C1250R | Tgt | Cgt | 24 | 26 | All | 0.000005 |
S | 1250 | C1250R | TgT | CgC | 1 | 26 | All | 0 |
S | 1250 | C1250R | TgT | AgA | 1 | 26 | All | 0 |
S | 1250 | C1250F | tGt | tTt | 24 | 24 | AY.102 | 0.000636 |
S | 1250 | C1250F | tGt | tTt | 24 | 24 | AY.25 | 0.000144 |
S | 1250 | C1250Y | tGt | tAt | 22 | 22 | AY.4 | 0.000034 |
S | 1250 | C1250F | tGt | tTt | 22 | 22 | B.1 | 0.000202 |
S | 1250 | C1250F | tGt | tTt | 22 | 22 | B.1.258 | 0.001464 |
S | 1250 | C1250F | tGt | tTt | 21 | 21 | AY.39 | 0.000519 |
S | 1250 | C1250C | tgT | tgC | 20 | 20 | B.1.1.7 | 0.000018 |
S | 1250 | C1250F | tGt | tTt | 19 | 19 | AY.36 | 0.002816 |
S | 1250 | C1250S | Tgt | Agt | 18 | 19 | B.1.1.7 | 0.000016 |
S | 1250 | C1250S | tGt | tCt | 1 | 19 | B.1.1.7 | 0.000001 |
S | 1250 | C1250F | tGt | tTt | 19 | 19 | B.1.177 | 0.00025 |
S | 1250 | C1250del | TGT | --- | 18 | 18 | AY.4.5 | 0.001935 |
S | 1250 | C1250F | tGt | tTt | 17 | 17 | C.37 | 0.001973 |
S | 1250 | C1250F | tGt | tTt | 16 | 16 | AY.29 | 0.000252 |
S | 1250 | C1250F | tGt | tTt | 16 | 16 | B.1.2 | 0.000141 |
S | 1250 | C1250F | tGt | tTt | 15 | 15 | B.1.1 | 0.000272 |
S | 1250 | C1250F | tGt | tTt | 15 | 15 | B.1.621.1 | 0.007587 |
S | 1250 | C1250C | tgT | tgC | 14 | 14 | AY.25 | 0.000084 |
S | 1250 | C1250F | tGt | tTt | 14 | 14 | AY.3 | 0.000139 |
S | 1250 | C1250Y | tGt | tAt | 14 | 14 | AY.9.2 | 0.000514 |
S | 1250 | C1250F | tGt | tTt | 14 | 14 | B.1.36.10 | 0.066986 |
S | 1250 | C1250G | Tgt | Ggt | 13 | 13 | All | 0.000002 |
S | 1250 | C1250Y | tGt | tAt | 13 | 13 | AY.9.1 | 0.001088 |
S | 1250 | C1250F | tGt | tTt | 13 | 13 | B.1.1.298 | 0.011207 |
S | 1250 | C1250F | tGt | tTt | 12 | 12 | B.1.234 | 0.001583 |
S | 1250 | C1250F | tGt | tTt | 12 | 12 | B.1.427 | 0.000606 |
S | 1250 | C1250W | tgT | tgG | 11 | 11 | AY.102 | 0.000292 |
S | 1250 | C1250Y | tGt | tAt | 11 | 11 | AY.44 | 0.000067 |
S | 1250 | C1250F | tGt | tTt | 11 | 11 | AY.6 | 0.000452 |
S | 1250 | C1250W | tgT | tgG | 11 | 11 | B.1.617.2 | 0.000041 |
S | 1250 | C1250del | TGT | --- | 9 | 9 | B.1.177 | 0.000119 |
S | 1250 | C1250F | tGt | tTt | 9 | 9 | P.1.7 | 0.002874 |
S | 1250 | C1250F | tGt | tTt | 8 | 8 | AY.118 | 0.000501 |
S | 1250 | C1250F | tGt | tTt | 8 | 8 | AY.23 | 0.000558 |
S | 1250 | C1250Y | tGt | tAt | 8 | 8 | AY.25 | 0.000048 |
S | 1250 | C1250F | tGt | tTt | 8 | 8 | AY.4.2 | 0.000174 |
S | 1250 | C1250Y | tGt | tAt | 8 | 8 | B.1.1.25 | 0.004548 |
S | 1250 | C1250F | tGt | tTt | 8 | 8 | B.1.1.28 | 0.00249 |
S | 1250 | C1250F | tGt | tTt | 8 | 8 | B.1.1.519 | 0.000318 |
S | 1250 | C1250F | tGt | tTt | 8 | 8 | B.1.526 | 0.000188 |
S | 1250 | C1250F | tGt | tTt | 7 | 7 | AY.106 | 0.002344 |
S | 1250 | C1250G | Tgt | Ggt | 7 | 7 | AY.3 | 0.00007 |
S | 1250 | C1250F | tGt | tTt | 7 | 7 | AY.42 | 0.000282 |
S | 1250 | C1250F | tGt | tTt | 7 | 7 | B.1.128 | 0.004447 |
S | 1250 | C1250C | tgT | tgC | 7 | 7 | B.1.2 | 0.000062 |
S | 1250 | C1250C | tgT | tgC | 7 | 7 | B.1.617.2 | 0.000026 |
S | 1250 | C1250Y | tGt | tAt | 7 | 7 | B.1.617.2 | 0.000026 |
S | 1250 | C1250C | tgT | tgC | 6 | 6 | AY.103 | 0.000037 |
S | 1250 | C1250Y | tGt | tAt | 6 | 6 | AY.4.2 | 0.00013 |
S | 1250 | C1250C | tgT | tgC | 6 | 6 | AY.43 | 0.000027 |
S | 1250 | C1250S | Tgt | Agt | 6 | 6 | AY.46.5 | 0.00119 |
S | 1250 | C1250F | tGt | tTt | 6 | 6 | AY.61 | 0.000629 |
S | 1250 | C1250F | tGt | tTt | 6 | 6 | AY.98 | 0.000474 |
S | 1250 | C1250C | tgT | tgC | 6 | 6 | B.1.1.317 | 0.00247 |
S | 1250 | C1250F | tGt | tTt | 6 | 6 | B.1.177.38 | 0.0625 |
S | 1250 | C1250F | tGt | tTt | 6 | 6 | B.1.351 | 0.000178 |
S | 1250 | C1250F | tGt | tTt | 6 | 6 | B.40 | 0.002186 |
S | 1250 | C1250F | tGt | tTt | 6 | 6 | P.1.8 | 0.028708 |
S | 1250 | C1250R | Tgt | Cgt | 5 | 5 | AY.113 | 0.000712 |
S | 1250 | C1250F | tGt | tTt | 5 | 5 | AY.12 | 0.00158 |
S | 1250 | C1250F | tGt | tTt | 5 | 5 | AY.26 | 0.000142 |
S | 1250 | C1250C | tgT | tgC | 5 | 5 | AY.3 | 0.00005 |
S | 1250 | C1250F | tGt | tTt | 5 | 5 | AY.3.1 | 0.000426 |
S | 1250 | C1250S | Tgt | Agt | 5 | 5 | AY.4 | 0.000008 |
S | 1250 | C1250Y | tGt | tAt | 5 | 5 | AY.43 | 0.000022 |
S | 1250 | C1250F | tGt | tTt | 5 | 5 | AY.45 | 0.000608 |
S | 1250 | C1250F | tGt | tTt | 5 | 5 | AY.5 | 0.000103 |
S | 1250 | C1250G | Tgt | Ggt | 5 | 5 | B.1.1.7 | 0.000004 |
S | 1250 | C1250F | tGt | tTt | 5 | 5 | B.1.429 | 0.000118 |
S | 1250 | C1250X | tgT | tgA | 4 | 4 | All | 0.000001 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | AY.100 | 0.000184 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | AY.107 | 0.001864 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | AY.108 | 0.00441 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | AY.120 | 0.000149 |
S | 1250 | C1250Y | tGt | tAt | 4 | 4 | AY.33 | 0.000267 |
S | 1250 | C1250S | tGt | tCt | 4 | 4 | AY.34 | 0.000388 |
S | 1250 | C1250W | tgT | tgG | 4 | 4 | AY.39 | 0.000099 |
S | 1250 | C1250C | tgT | tgC | 4 | 4 | AY.4 | 0.000006 |
S | 1250 | C1250C | tgT | tgC | 4 | 4 | AY.44 | 0.000024 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | AY.92 | 0.001149 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | AY.93 | 0.001092 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | B.1.1.141 | 0.008048 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | B.1.1.286 | 0.011594 |
S | 1250 | C1250R | Tgt | Cgt | 4 | 4 | B.1.1.7 | 0.000004 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | B.1.177.24 | 0.005181 |
S | 1250 | C1250C | tgT | tgC | 4 | 4 | B.1.234 | 0.000528 |
S | 1250 | C1250S | tGt | tCt | 4 | 4 | B.1.526 | 0.000094 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | B.1.596 | 0.000349 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | B.1.617.1 | 0.000516 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | B.1.621 | 0.000354 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | C.36.3 | 0.002269 |
S | 1250 | C1250F | tGt | tTt | 4 | 4 | P.1.17 | 0.000647 |
S | 1250 | C1250W | tgT | tgG | 4 | 4 | R.1 | 0.00036 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | A.2.5.2 | 0.004717 |
S | 1250 | C1250H | TGt | CAt | 2 | 3 | All | 0 |
S | 1250 | C1250H | TGT | CAC | 1 | 3 | All | 0 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | AY.121 | 0.000406 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | AY.20 | 0.000117 |
S | 1250 | C1250C | tgT | tgC | 3 | 3 | AY.7.1 | 0.000338 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | AY.70 | 0.000626 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | AY.9.1 | 0.000251 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | AY.9.2 | 0.00011 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | B.1.1.486 | 0.004732 |
S | 1250 | C1250Y | tGt | tAt | 3 | 3 | B.1.2 | 0.000026 |
S | 1250 | C1250R | Tgt | Cgt | 3 | 3 | B.1.2 | 0.000026 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | B.1.351.2 | 0.000908 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | B.1.36.29 | 0.001552 |
S | 1250 | C1250F | tGt | tTt | 3 | 3 | B.1.620 | 0.002838 |
S | 1250 | C1250Y | tGt | tAt | 3 | 3 | P.1 | 0.000047 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 2 | 0.055556 | |
S | 1250 | C1250Y | tGt | tAt | 1 | 2 | 0.055556 | |
S | 1250 | C1250Y | tGT | tAC | 1 | 2 | 0.055556 | |
S | 1250 | C1250R | TgT | CgC | 1 | 2 | 0.055556 | |
S | 1250 | C1250H | TGT | CAC | 1 | 2 | 0.055556 | |
S | 1250 | C1250H | TGt | CAt | 1 | 2 | 0.055556 | |
S | 1250 | C1250C | tgT | tgC | 2 | 2 | A.1 | 0.000564 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | A.2.5 | 0.000998 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | A.2.5.3 | 0.020619 |
S | 1250 | C1250L | TGt | CTt | 2 | 2 | All | 0 |
S | 1250 | C1250del2 | TGt | --t | 1 | 2 | All | 0 |
S | 1250 | C1250del1 | tGT | t-C | 1 | 2 | All | 0 |
S | 1250 | C1250del2 | TGT | --G | 1 | 2 | All | 0 |
S | 1250 | C1250del1 | Tgt | -gt | 1 | 2 | All | 0 |
S | 1250 | C1250W | tgT | tgG | 2 | 2 | AY.103 | 0.000012 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | AY.117 | 0.000169 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | AY.117 | 0.000169 |
S | 1250 | C1250C | tgT | tgC | 2 | 2 | AY.12 | 0.000632 |
S | 1250 | C1250C | tgT | tgC | 2 | 2 | AY.20 | 0.000078 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | AY.23 | 0.000139 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | AY.29.1 | 0.000441 |
S | 1250 | C1250W | tgT | tgG | 2 | 2 | AY.3 | 0.00002 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | AY.3 | 0.00002 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | AY.30 | 0.000791 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | AY.39 | 0.000049 |
S | 1250 | C1250C | tgT | tgC | 2 | 2 | AY.39 | 0.000049 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | AY.46.5 | 0.000397 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | AY.46.6 | 0.000144 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | AY.69 | 0.000373 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | AY.98.1 | 0.000097 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | AY.99.2 | 0.000184 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B | 0.000256 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | B.1 | 0.000018 |
S | 1250 | C1250C | tgT | tgC | 2 | 2 | B.1.1 | 0.000036 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.1.222 | 0.000408 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.1.230 | 0.018349 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.1.25 | 0.001137 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | B.1.160.16 | 0.001859 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.160.28 | 0.005848 |
S | 1250 | C1250C | tgT | tgC | 2 | 2 | B.1.177 | 0.000026 |
S | 1250 | C1250del | TGT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.177.81 | 0.000379 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.243 | 0.000139 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | B.1.311 | 0.000549 |
S | 1250 | C1250X | tgT | tgA | 2 | 2 | B.1.351 | 0.000059 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.36.16 | 0.002849 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.438.1 | 0.000215 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | B.1.517 | 0.000854 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.525 | 0.000226 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | B.1.526 | 0.000047 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.564 | 0.000852 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.576 | 0.001813 |
S | 1250 | C1250del | TGT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.623 | 0.001073 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | B.1.9.5 | 0.011364 |
S | 1250 | C1250Y | tGt | tAt | 2 | 2 | P.1.14 | 0.000096 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | P.2 | 0.000373 |
S | 1250 | C1250F | tGt | tTt | 2 | 2 | Q.3 | 0.00029 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | 0.055556 | |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | A | 0.000387 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | A.1 | 0.000282 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | A.2 | 0.000662 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | A.23.1 | 0.000704 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AE.5 | 0.018519 |
S | 1250 | C1250N | TGt | AAt | 1 | 1 | All | 0 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.102 | 0.000027 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | AY.103 | 0.000006 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.105 | 0.000643 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.108 | 0.001103 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | AY.108 | 0.001103 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.110 | 0.000113 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.116 | 0.000287 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | AY.117 | 0.000085 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.118 | 0.000063 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | AY.119 | 0.000035 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.120.2 | 0.001285 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.14 | 0.000088 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.16 | 0.00038 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.19 | 0.00114 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | AY.25 | 0.000006 |
S | 1250 | C1250G | Tgt | Ggt | 1 | 1 | AY.25 | 0.000006 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | AY.25 | 0.000006 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | AY.27 | 0.000065 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.35 | 0.000233 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.37 | 0.000316 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.38 | 0.000499 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | AY.39 | 0.000025 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.39.1 | 0.00004 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.39.2 | 0.001541 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | AY.4 | 0.000002 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | AY.4 | 0.000002 |
S | 1250 | C1250S | Tgt | Agt | 1 | 1 | AY.4.2 | 0.000022 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.4.2 | 0.000022 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | AY.4.5 | 0.000107 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | AY.42 | 0.00004 |
S | 1250 | C1250S | tGt | tCt | 1 | 1 | AY.42 | 0.00004 |
S | 1250 | C1250del2 | TGT | --G | 1 | 1 | AY.44 | 0.000006 |
S | 1250 | C1250H | TGt | CAt | 1 | 1 | AY.44 | 0.000006 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | AY.44 | 0.000006 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | AY.45 | 0.000122 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.47 | 0.000031 |
S | 1250 | C1250del1 | tGT | t-C | 1 | 1 | AY.48 | 0.000465 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | AY.5 | 0.000021 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.5 | 0.000021 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.5.3 | 0.000337 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.5.4 | 0.000277 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.52 | 0.000814 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.54 | 0.000095 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.54 | 0.000095 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.55 | 0.000917 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | AY.6 | 0.000041 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.64 | 0.000595 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.68 | 0.000274 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.7.1 | 0.000113 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.71 | 0.000475 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.73 | 0.000665 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.75 | 0.000056 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.75.1 | 0.00018 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.76 | 0.004831 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | AY.8 | 0.000606 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | AY.81 | 0.001992 |
S | 1250 | C1250del2 | TGt | --t | 1 | 1 | AY.9 | 0.000068 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | AY.9.2 | 0.000037 |
S | 1250 | C1250X | tgT | tgA | 1 | 1 | B | 0.000128 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | B.1 | 0.000009 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | B.1 | 0.000009 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.1 | 0.000018 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | B.1.1 | 0.000018 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.187 | 0.00885 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.232 | 0.001815 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | B.1.1.241 | 0.00207 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.305 | 0.003861 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.329 | 0.003846 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.351 | 0.002793 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | B.1.1.368 | 0.003086 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.369 | 0.000446 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.394 | 0.02439 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | B.1.1.409 | 0.002833 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.1.521 | 0.005348 |
S | 1250 | C1250L | TGt | CTt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.160 | 0.000031 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.160.32 | 0.004292 |
S | 1250 | C1250del1 | Tgt | -gt | 1 | 1 | B.1.177 | 0.000013 |
S | 1250 | C1250X | tgT | tgA | 1 | 1 | B.1.177 | 0.000013 |
S | 1250 | C1250N | TGt | AAt | 1 | 1 | B.1.177 | 0.000013 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | B.1.177.15 | 0.000631 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.177.21 | 0.000076 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.210 | 0.002132 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.221 | 0.000071 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.221 | 0.000071 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | B.1.221.4 | 0.004167 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.23 | 0.006061 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.232 | 0.000537 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.240 | 0.000216 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.243 | 0.00007 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.258.7 | 0.001912 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.293 | 0.0125 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.340 | 0.004292 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.36 | 0.000146 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.369 | 0.000285 |
S | 1250 | C1250S | tGt | tCt | 1 | 1 | B.1.385 | 0.010638 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.389 | 0.001002 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.400 | 0.000429 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.420 | 0.010417 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | B.1.427 | 0.00005 |
S | 1250 | C1250L | TGt | CTt | 1 | 1 | B.1.427 | 0.00005 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | B.1.438.1 | 0.000107 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | B.1.462 | 0.007246 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.470 | 0.001404 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.558 | 0.004566 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.564 | 0.000426 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.565 | 0.00081 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.595 | 0.000261 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.596 | 0.000087 |
S | 1250 | C1250S | tGt | tCt | 1 | 1 | B.1.596 | 0.000087 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | B.1.596 | 0.000087 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | B.1.609 | 0.000479 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | B.1.617.1 | 0.000129 |
S | 1250 | C1250R | TgT | AgA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1250 | C1250S | tGt | tCt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | B.1.622 | 0.012987 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | B.1.630 | 0.005236 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | B.1.632 | 0.006711 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | B.3.1 | 0.001658 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | B.61 | 0.005747 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | C.35 | 0.000774 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | D.2 | 0.000075 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | D.2 | 0.000075 |
S | 1250 | C1250R | Tgt | Cgt | 1 | 1 | D.2 | 0.000075 |
S | 1250 | C1250S | Tgt | Agt | 1 | 1 | D.2 | 0.000075 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | D.3 | 0.005917 |
S | 1250 | C1250W | tgT | tgG | 1 | 1 | N.5 | 0.001767 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | P.1 | 0.000016 |
S | 1250 | C1250C | tgT | tgC | 1 | 1 | P.1 | 0.000016 |
S | 1250 | C1250Y | tGt | tAt | 1 | 1 | P.1.10 | 0.000269 |
S | 1250 | C1250S | tGt | tCt | 1 | 1 | P.1.14 | 0.000048 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | P.1.15 | 0.000232 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | P.1.17.1 | 0.000875 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | P.3 | 0.001595 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | Q.1 | 0.000126 |
S | 1250 | C1250F | tGt | tTt | 1 | 1 | Q.8 | 0.000165 |
S | 1250 | C1250del | TGT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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