CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1237 & Codon = atC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1237M1237InonsynatGatC983220810.21165625271-25273

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1237M1237IatGatC20819832All0.000398
S1237M1237IatGatC9152636AY.40.001424
S1237M1237IatGatC2691516B.1.1.70.000241
S1237M1237IatGatC50663B.1.617.20.000188
S1237M1237IatGatC1491AY.9.20.000037
S1237M1237IatGatC316455B.1.20.002782
S1237M1237IatGatC43279AY.430.000191
S1237M1237IatGatC1229B.1.6210.000089
S1237M1237IatGatC11160AY.1030.000068
S1237M1237IatGatC80152AY.260.002265
S1237M1237IatGatC16150AY.440.000097
S1237M1237IatGatC8140AY.1020.000212
S1237M1237IatGatC9121B.1.10.000163
S1237M1237IatGatC27113B.10.000247
S1237M1237IatGatC6112B.1.1770.000079
S1237M1237IatGatC685AY.250.000036
S1237M1237IatGatC181AY.330.000067
S1237M1237IatGatC178AY.980.000079
S1237M1237IatGatC673AY.390.000148
S1237M1237IatGatC472P.10.000063
S1237M1237IatGatC368B.1.3510.000089
S1237M1237IatGatC563AY.30.00005
S1237M1237IatGatC156AY.4.20.000022
S1237M1237IatGatC346AY.1210.000406
S1237M1237IatGatC1343AY.1000.000598
S1237M1237IatGatC138AY.1200.000037
S1237M1237IatGatC1438B.1.4290.000329
S1237M1237IatGatC3636AY.10.014246
S1237M1237IatGatC536B.1.360.00073
S1237M1237IatGatC3134AY.240.013362
S1237M1237IatGatC1027AY.200.000389
S1237M1237IatGatC1025B.1.5260.000235
S1237M1237IatGatC424B.1.1.5190.000159
S1237M1237IatGatC1022B.1.2580.000665
S1237M1237IatGatC820AY.39.10.000317
S1237M1237IatGatC120B.1.2430.00007
S1237M1237IatGatC619AY.290.000095
S1237M1237IatGatC1718AY.730.011311
S1237M1237IatGatC116AY.450.000122
S1237M1237IatGatC1015AY.98.10.000484
S1237M1237IatGatC213AY.5.30.000675
S1237M1237IatGatC1112C.360.010018
S1237M1237IatGatC311AY.1130.000427
S1237M1237IatGatC311AY.1170.000254
S1237M1237IatGatC111AY.420.00004
S1237M1237IatGatC1011B.1.4700.014045
S1237M1237IatGatC110AY.230.00007
S1237M1237IatGatC310B.1.5960.000261
S1237M1237IatGatC610P.20.00112
S1237M1237IatGatC39AY.340.000291
S1237M1237IatGatC29B.1.617.10.000258
S1237M1237IatGatC18AY.1190.000035
S1237M1237IatGatC38AY.270.000194
S1237M1237IatGatC37AY.470.000093
S1237M1237IatGatC27B0.000256
S1237M1237IatGatC16AY.60.000041
S1237M1237IatGatC66AY.99.10.009317
S1237M1237IatGatC16B.1.4270.00005
S1237M1237IatGatC15A0.000387
S1237M1237IatGatC55AY.740.000578
S1237M1237IatGatC55B.1.2980.010571
S1237M1237IatGatC25B.1.6270.00404
S1237M1237IatGatC14AY.1010.00049
S1237M1237IatGatC14AY.116.10.000311
S1237M1237IatGatC14AY.4.50.000107
S1237M1237IatGatC14AY.750.000056
S1237M1237IatGatC14B.1.5250.000113
S1237M1237IatGatC14P.1.150.000232
S1237M1237IatGatC24Q.80.00033
S1237M1237IatGatC13AY.620.000436
S1237M1237IatGatC23D.20.00015
S1237M1237IatGatC22AY.34.10.00102
S1237M1237IatGatC12AY.4.40.000409
S1237M1237IatGatC12AY.400.000964
S1237M1237IatGatC12AY.540.000095
S1237M1237IatGatC12AY.840.000437
S1237M1237IatGatC12B.1.1.10.000327
S1237M1237IatGatC22B.1.1470.001512
S1237M1237IatGatC12B.1.177.570.000281
S1237M1237IatGatC22B.1.6260.011429
S1237M1237IatGatC11A.10.000282
S1237M1237IatGatC11A.20.000662
S1237M1237IatGatC11A.50.001923
S1237M1237IatGatC11AD.20.000219
S1237M1237IatGatC11AT.10.005128
S1237M1237IatGatC11AU.10.001266
S1237M1237IatGatC11AY.120.10.000321
S1237M1237IatGatC11AY.560.001605
S1237M1237IatGatC11AY.570.000656
S1237M1237IatGatC11AY.580.000907
S1237M1237IatGatC11AY.660.00107
S1237M1237IatGatC11AZ.30.00152
S1237M1237IatGatC11B.1.1.4480.002033
S1237M1237IatGatC11B.1.1260.001276
S1237M1237IatGatC11B.1.221.30.000833
S1237M1237IatGatC11B.1.3320.003497
S1237M1237IatGatC11B.1.36.160.001425
S1237M1237IatGatC11B.1.36.240.006173
S1237M1237IatGatC11B.1.438.10.000107
S1237M1237IatGatC11B.1.5950.000261
S1237M1237IatGatC11B.1.6190.000871
S1237M1237IatGatC11K.10.02381
S1237M1237IatGatC11P.1.170.000162
S1237M1237IatGatC11P.60.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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