CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1229 | M1229I | nonsyn | atG | atT | 6797 | 6214 | 0.914227 | 25247-25249 | |
S | 1229 | M1229I | nonsyn | atG | atA | 6797 | 370 | 0.0544358 | 25247-25249 | |
S | 1229 | M1229I | nonsyn | atG | atC | 6797 | 213 | 0.0313374 | 25247-25249 | |
S | 1229 | M1229T | nonsyn | aTg | aCg | 765 | 762 | 0.996078 | 25247-25249 | |
S | 1229 | M1229T | nonsyn | aTG | aCA | 765 | 3 | 0.00392157 | 25247-25249 | |
S | 1229 | M1229V | nonsyn | Atg | Gtg | 314 | 312 | 0.993631 | 25247-25249 | |
S | 1229 | M1229V | nonsyn | AtG | GtA | 314 | 2 | 0.00636943 | 25247-25249 | |
S | 1229 | M1229L | nonsyn | Atg | Ctg | 202 | 146 | 0.722772 | 25247-25249 | |
S | 1229 | M1229L | nonsyn | Atg | Ttg | 202 | 55 | 0.272277 | 25247-25249 | |
S | 1229 | M1229L | nonsyn | AtG | CtT | 202 | 1 | 0.00495049 | 25247-25249 | |
S | 1229 | M1229del | del | ATG | --- | 151 | 151 | 1 | 25247-25249 | |
S | 1229 | M1229K | nonsyn | aTg | aAg | 8 | 8 | 1 | 25247-25249 | |
S | 1229 | M1229del1 | del | atG | at- | 5 | 3 | 0.6 | 25247-25249 | |
S | 1229 | M1229del1 | del | ATg | G-g | 5 | 1 | 0.2 | 25247-25249 | |
S | 1229 | M1229del1 | del | Atg | -tg | 5 | 1 | 0.2 | 25247-25249 | |
S | 1229 | M1229A | nonsyn | ATg | GCg | 4 | 2 | 0.5 | 25247-25249 | |
S | 1229 | M1229A | nonsyn | ATG | GCA | 4 | 2 | 0.5 | 25247-25249 | |
S | 1229 | M1229N | nonsyn | aTG | aAC | 2 | 2 | 1 | 25247-25249 | |
S | 1229 | M1229R | nonsyn | aTg | aGg | 1 | 1 | 1 | 25247-25249 | |
S | 1229 | M1229del2 | del | ATg | --g | 1 | 1 | 1 | 25247-25249 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1229 | M1229I | atG | atT | 6214 | 6797 | All | 0.001189 |
S | 1229 | M1229I | atG | atA | 370 | 6797 | All | 0.000071 |
S | 1229 | M1229I | atG | atC | 213 | 6797 | All | 0.000041 |
S | 1229 | M1229I | atG | atT | 1501 | 1592 | B.1.1.7 | 0.001344 |
S | 1229 | M1229I | atG | atC | 66 | 1592 | B.1.1.7 | 0.000059 |
S | 1229 | M1229I | atG | atA | 25 | 1592 | B.1.1.7 | 0.000022 |
S | 1229 | M1229T | aTg | aCg | 762 | 765 | All | 0.000146 |
S | 1229 | M1229T | aTG | aCA | 3 | 765 | All | 0.000001 |
S | 1229 | M1229I | atG | atT | 414 | 506 | AY.4 | 0.000644 |
S | 1229 | M1229I | atG | atA | 65 | 506 | AY.4 | 0.000101 |
S | 1229 | M1229I | atG | atC | 27 | 506 | AY.4 | 0.000042 |
S | 1229 | M1229I | atG | atT | 497 | 497 | B.1.621 | 0.043994 |
S | 1229 | M1229I | atG | atT | 394 | 394 | B.1.480 | 0.9801 |
S | 1229 | M1229T | aTg | aCg | 342 | 342 | B.1.526 | 0.008039 |
S | 1229 | M1229I | atG | atT | 244 | 336 | B.1.617.2 | 0.000919 |
S | 1229 | M1229I | atG | atA | 81 | 336 | B.1.617.2 | 0.000305 |
S | 1229 | M1229I | atG | atC | 11 | 336 | B.1.617.2 | 0.000041 |
S | 1229 | M1229V | Atg | Gtg | 312 | 314 | All | 0.00006 |
S | 1229 | M1229V | AtG | GtA | 2 | 314 | All | 0 |
S | 1229 | M1229I | atG | atT | 232 | 243 | AY.103 | 0.001441 |
S | 1229 | M1229I | atG | atA | 8 | 243 | AY.103 | 0.00005 |
S | 1229 | M1229I | atG | atC | 3 | 243 | AY.103 | 0.000019 |
S | 1229 | M1229I | atG | atT | 240 | 240 | B.1.1.39 | 0.122324 |
S | 1229 | M1229I | atG | atT | 223 | 226 | AY.44 | 0.001357 |
S | 1229 | M1229I | atG | atC | 3 | 226 | AY.44 | 0.000018 |
S | 1229 | M1229V | Atg | Gtg | 202 | 203 | B.1.1.7 | 0.000181 |
S | 1229 | M1229V | AtG | GtA | 1 | 203 | B.1.1.7 | 0.000001 |
S | 1229 | M1229L | Atg | Ctg | 146 | 202 | All | 0.000028 |
S | 1229 | M1229L | Atg | Ttg | 55 | 202 | All | 0.000011 |
S | 1229 | M1229L | AtG | CtT | 1 | 202 | All | 0 |
S | 1229 | M1229I | atG | atT | 187 | 190 | B.1.2 | 0.001647 |
S | 1229 | M1229I | atG | atC | 2 | 190 | B.1.2 | 0.000018 |
S | 1229 | M1229I | atG | atA | 1 | 190 | B.1.2 | 0.000009 |
S | 1229 | M1229T | aTg | aCg | 190 | 190 | W.3 | 1 |
S | 1229 | M1229del | ATG | --- | 151 | 151 | All | 0.000029 |
S | 1229 | M1229I | atG | atT | 132 | 148 | AY.43 | 0.000585 |
S | 1229 | M1229I | atG | atA | 13 | 148 | AY.43 | 0.000058 |
S | 1229 | M1229I | atG | atC | 3 | 148 | AY.43 | 0.000013 |
S | 1229 | M1229I | atG | atT | 120 | 140 | B.1 | 0.001099 |
S | 1229 | M1229I | atG | atC | 17 | 140 | B.1 | 0.000156 |
S | 1229 | M1229I | atG | atA | 3 | 140 | B.1 | 0.000027 |
S | 1229 | M1229L | Atg | Ctg | 132 | 132 | B.1.139 | 0.096774 |
S | 1229 | M1229I | atG | atT | 114 | 114 | AY.98.1 | 0.005521 |
S | 1229 | M1229I | atG | atT | 99 | 105 | P.1 | 0.00156 |
S | 1229 | M1229I | atG | atC | 4 | 105 | P.1 | 0.000063 |
S | 1229 | M1229I | atG | atA | 2 | 105 | P.1 | 0.000032 |
S | 1229 | M1229T | aTg | aCg | 103 | 104 | B.1.1.7 | 0.000092 |
S | 1229 | M1229T | aTG | aCA | 1 | 104 | B.1.1.7 | 0.000001 |
S | 1229 | M1229I | atG | atA | 88 | 95 | AY.47 | 0.002737 |
S | 1229 | M1229I | atG | atT | 5 | 95 | AY.47 | 0.000156 |
S | 1229 | M1229I | atG | atC | 2 | 95 | AY.47 | 0.000062 |
S | 1229 | M1229I | atG | atT | 90 | 91 | AY.5 | 0.001858 |
S | 1229 | M1229I | atG | atC | 1 | 91 | AY.5 | 0.000021 |
S | 1229 | M1229I | atG | atT | 75 | 78 | AY.102 | 0.001989 |
S | 1229 | M1229I | atG | atC | 3 | 78 | AY.102 | 0.00008 |
S | 1229 | M1229I | atG | atT | 70 | 74 | AY.25 | 0.000421 |
S | 1229 | M1229I | atG | atC | 3 | 74 | AY.25 | 0.000018 |
S | 1229 | M1229I | atG | atA | 1 | 74 | AY.25 | 0.000006 |
S | 1229 | M1229I | atG | atT | 70 | 71 | B.1.177 | 0.000922 |
S | 1229 | M1229I | atG | atC | 1 | 71 | B.1.177 | 0.000013 |
S | 1229 | M1229I | atG | atT | 70 | 70 | AY.33 | 0.004674 |
S | 1229 | M1229I | atG | atT | 61 | 68 | AY.3 | 0.000607 |
S | 1229 | M1229I | atG | atA | 4 | 68 | AY.3 | 0.00004 |
S | 1229 | M1229I | atG | atC | 3 | 68 | AY.3 | 0.00003 |
S | 1229 | M1229del | ATG | --- | 62 | 62 | B.1.1.7 | 0.000056 |
S | 1229 | M1229I | atG | atT | 59 | 59 | B.1.1.266 | 0.719512 |
S | 1229 | M1229I | atG | atT | 56 | 56 | AY.46.6 | 0.004044 |
S | 1229 | M1229I | atG | atT | 54 | 54 | AY.39 | 0.001334 |
S | 1229 | M1229I | atG | atT | 47 | 50 | B.1.351 | 0.001397 |
S | 1229 | M1229I | atG | atA | 2 | 50 | B.1.351 | 0.000059 |
S | 1229 | M1229I | atG | atC | 1 | 50 | B.1.351 | 0.00003 |
S | 1229 | M1229I | atG | atT | 44 | 44 | AY.119 | 0.001554 |
S | 1229 | M1229I | atG | atT | 37 | 42 | B.1.1 | 0.000671 |
S | 1229 | M1229I | atG | atA | 3 | 42 | B.1.1 | 0.000054 |
S | 1229 | M1229I | atG | atC | 2 | 42 | B.1.1 | 0.000036 |
S | 1229 | M1229I | atG | atT | 40 | 40 | AY.29 | 0.000631 |
S | 1229 | M1229I | atG | atA | 20 | 38 | AY.120 | 0.000744 |
S | 1229 | M1229I | atG | atT | 18 | 38 | AY.120 | 0.000669 |
S | 1229 | M1229I | atG | atT | 38 | 38 | AY.36 | 0.005632 |
S | 1229 | M1229I | atG | atT | 34 | 35 | B.1.526 | 0.000799 |
S | 1229 | M1229I | atG | atA | 1 | 35 | B.1.526 | 0.000024 |
S | 1229 | M1229I | atG | atT | 33 | 33 | B.1.177.27 | 0.311321 |
S | 1229 | M1229T | aTg | aCg | 32 | 32 | AY.4 | 0.00005 |
S | 1229 | M1229I | atG | atT | 31 | 31 | AY.42 | 0.001247 |
S | 1229 | M1229I | atG | atC | 19 | 30 | B.1.1.519 | 0.000755 |
S | 1229 | M1229I | atG | atT | 8 | 30 | B.1.1.519 | 0.000318 |
S | 1229 | M1229I | atG | atA | 3 | 30 | B.1.1.519 | 0.000119 |
S | 1229 | M1229I | atG | atT | 25 | 28 | P.2 | 0.004666 |
S | 1229 | M1229I | atG | atC | 3 | 28 | P.2 | 0.00056 |
S | 1229 | M1229V | Atg | Gtg | 27 | 27 | AY.4 | 0.000042 |
S | 1229 | M1229I | atG | atT | 23 | 24 | AY.20 | 0.000894 |
S | 1229 | M1229I | atG | atA | 1 | 24 | AY.20 | 0.000039 |
S | 1229 | M1229I | atG | atT | 23 | 23 | B.1.1.284 | 0.00247 |
S | 1229 | M1229I | atG | atT | 19 | 21 | AY.45 | 0.002312 |
S | 1229 | M1229I | atG | atC | 2 | 21 | AY.45 | 0.000243 |
S | 1229 | M1229I | atG | atT | 18 | 19 | AY.99.2 | 0.001659 |
S | 1229 | M1229I | atG | atC | 1 | 19 | AY.99.2 | 0.000092 |
S | 1229 | M1229I | atG | atT | 15 | 19 | P.1.14 | 0.000717 |
S | 1229 | M1229I | atG | atA | 2 | 19 | P.1.14 | 0.000096 |
S | 1229 | M1229I | atG | atC | 2 | 19 | P.1.14 | 0.000096 |
S | 1229 | M1229I | atG | atT | 18 | 18 | C.36.3 | 0.01021 |
S | 1229 | M1229I | atG | atT | 17 | 17 | AY.23 | 0.001186 |
S | 1229 | M1229I | atG | atT | 17 | 17 | B.1.1.283 | 0.395349 |
S | 1229 | M1229V | Atg | Gtg | 17 | 17 | Q.1 | 0.002148 |
S | 1229 | M1229I | atG | atT | 16 | 16 | AY.46.4 | 0.002632 |
S | 1229 | M1229I | atG | atT | 16 | 16 | AY.5.4 | 0.004427 |
S | 1229 | M1229I | atG | atT | 15 | 15 | AY.100 | 0.00069 |
S | 1229 | M1229I | atG | atT | 15 | 15 | AY.34.1 | 0.007649 |
S | 1229 | M1229del | ATG | --- | 15 | 15 | AY.4.5 | 0.001612 |
S | 1229 | M1229T | aTg | aCg | 14 | 14 | AY.103 | 0.000087 |
S | 1229 | M1229del | ATG | --- | 14 | 14 | B.1.177 | 0.000184 |
S | 1229 | M1229I | atG | atT | 10 | 13 | AY.26 | 0.000283 |
S | 1229 | M1229I | atG | atC | 2 | 13 | AY.26 | 0.000057 |
S | 1229 | M1229I | atG | atA | 1 | 13 | AY.26 | 0.000028 |
S | 1229 | M1229I | atG | atT | 13 | 13 | AY.27 | 0.000841 |
S | 1229 | M1229I | atG | atT | 12 | 13 | AY.4.2 | 0.00026 |
S | 1229 | M1229I | atG | atA | 1 | 13 | AY.4.2 | 0.000022 |
S | 1229 | M1229I | atG | atT | 10 | 13 | AY.9.2 | 0.000367 |
S | 1229 | M1229I | atG | atC | 3 | 13 | AY.9.2 | 0.00011 |
S | 1229 | M1229I | atG | atT | 13 | 13 | B.1.160 | 0.000405 |
S | 1229 | M1229I | atG | atT | 12 | 12 | AY.46.1 | 0.01232 |
S | 1229 | M1229I | atG | atT | 11 | 12 | B.1.1.222 | 0.002244 |
S | 1229 | M1229I | atG | atC | 1 | 12 | B.1.1.222 | 0.000204 |
S | 1229 | M1229I | atG | atT | 12 | 12 | B.1.1.298 | 0.010345 |
S | 1229 | M1229I | atG | atT | 12 | 12 | Q.8 | 0.001979 |
S | 1229 | M1229I | atG | atT | 10 | 11 | AY.117 | 0.000845 |
S | 1229 | M1229I | atG | atC | 1 | 11 | AY.117 | 0.000085 |
S | 1229 | M1229I | atG | atT | 10 | 11 | AY.118 | 0.000626 |
S | 1229 | M1229I | atG | atC | 1 | 11 | AY.118 | 0.000063 |
S | 1229 | M1229I | atG | atT | 11 | 11 | B.1.1.216 | 0.009795 |
S | 1229 | M1229I | atG | atT | 11 | 11 | B.1.1.291 | 0.008166 |
S | 1229 | M1229I | atG | atT | 9 | 10 | AY.24 | 0.003879 |
S | 1229 | M1229I | atG | atA | 1 | 10 | AY.24 | 0.000431 |
S | 1229 | M1229L | Atg | Ttg | 9 | 10 | AY.43 | 0.00004 |
S | 1229 | M1229L | Atg | Ctg | 1 | 10 | AY.43 | 0.000004 |
S | 1229 | M1229V | Atg | Gtg | 10 | 10 | AY.56 | 0.016051 |
S | 1229 | M1229I | atG | atT | 10 | 10 | B.1.582 | 0.004907 |
S | 1229 | M1229I | atG | atT | 10 | 10 | B.1.596 | 0.000871 |
S | 1229 | M1229I | atG | atT | 10 | 10 | B.1.623 | 0.005365 |
S | 1229 | M1229I | atG | atT | 10 | 10 | P.1.2 | 0.011561 |
S | 1229 | M1229I | atG | atT | 9 | 9 | AY.114 | 0.00208 |
S | 1229 | M1229L | Atg | Ctg | 5 | 9 | AY.4 | 0.000008 |
S | 1229 | M1229L | Atg | Ttg | 4 | 9 | AY.4 | 0.000006 |
S | 1229 | M1229I | atG | atT | 8 | 9 | AY.61 | 0.000838 |
S | 1229 | M1229I | atG | atC | 1 | 9 | AY.61 | 0.000105 |
S | 1229 | M1229I | atG | atT | 8 | 9 | AY.65 | 0.004264 |
S | 1229 | M1229I | atG | atA | 1 | 9 | AY.65 | 0.000533 |
S | 1229 | M1229I | atG | atT | 9 | 9 | B.1.1.326 | 0.015845 |
S | 1229 | M1229L | Atg | Ttg | 7 | 9 | B.1.1.7 | 0.000006 |
S | 1229 | M1229L | Atg | Ctg | 2 | 9 | B.1.1.7 | 0.000002 |
S | 1229 | M1229I | atG | atT | 8 | 9 | B.1.258 | 0.000532 |
S | 1229 | M1229I | atG | atC | 1 | 9 | B.1.258 | 0.000067 |
S | 1229 | M1229I | atG | atT | 9 | 9 | B.1.429 | 0.000212 |
S | 1229 | M1229K | aTg | aAg | 8 | 8 | All | 0.000002 |
S | 1229 | M1229V | Atg | Gtg | 8 | 8 | AY.25 | 0.000048 |
S | 1229 | M1229I | atG | atT | 8 | 8 | B.1.1.464 | 0.011782 |
S | 1229 | M1229I | atG | atA | 8 | 8 | B.1.411 | 0.02963 |
S | 1229 | M1229I | atG | atT | 5 | 8 | B.1.525 | 0.000566 |
S | 1229 | M1229I | atG | atC | 3 | 8 | B.1.525 | 0.000339 |
S | 1229 | M1229I | atG | atT | 7 | 8 | B.1.617.1 | 0.000903 |
S | 1229 | M1229I | atG | atC | 1 | 8 | B.1.617.1 | 0.000129 |
S | 1229 | M1229I | atG | atT | 8 | 8 | P.1.17 | 0.001294 |
S | 1229 | M1229I | atG | atT | 7 | 7 | AY.34 | 0.000679 |
S | 1229 | M1229T | aTg | aCg | 7 | 7 | B.1.617.2 | 0.000026 |
S | 1229 | M1229T | aTg | aCg | 7 | 7 | B.1.637 | 0.000512 |
S | 1229 | M1229T | aTg | aCg | 7 | 7 | P.1 | 0.00011 |
S | 1229 | M1229L | Atg | Ttg | 6 | 6 | AY.3 | 0.00006 |
S | 1229 | M1229del | ATG | --- | 6 | 6 | AY.4 | 0.000009 |
S | 1229 | M1229T | aTg | aCg | 6 | 6 | AY.44 | 0.000037 |
S | 1229 | M1229I | atG | atT | 6 | 6 | AY.5.3 | 0.002024 |
S | 1229 | M1229I | atG | atT | 6 | 6 | AY.6 | 0.000247 |
S | 1229 | M1229I | atG | atT | 6 | 6 | AY.98 | 0.000474 |
S | 1229 | M1229T | aTg | aCg | 6 | 6 | B.1.1 | 0.000109 |
S | 1229 | M1229I | atG | atT | 6 | 6 | B.1.8 | 0.011834 |
S | 1229 | M1229I | atG | atT | 6 | 6 | C.32 | 0.139535 |
S | 1229 | M1229del1 | atG | at- | 3 | 5 | All | 0.000001 |
S | 1229 | M1229del1 | ATg | G-g | 1 | 5 | All | 0 |
S | 1229 | M1229del1 | Atg | -tg | 1 | 5 | All | 0 |
S | 1229 | M1229I | atG | atT | 5 | 5 | AY.116.1 | 0.001557 |
S | 1229 | M1229I | atG | atT | 5 | 5 | AY.121 | 0.000677 |
S | 1229 | M1229I | atG | atA | 3 | 5 | AY.85 | 0.001282 |
S | 1229 | M1229I | atG | atT | 2 | 5 | AY.85 | 0.000854 |
S | 1229 | M1229I | atG | atT | 4 | 5 | AY.9 | 0.00027 |
S | 1229 | M1229I | atG | atC | 1 | 5 | AY.9 | 0.000068 |
S | 1229 | M1229I | atG | atC | 5 | 5 | AY.91 | 0.003652 |
S | 1229 | M1229I | atG | atT | 5 | 5 | B.1.1.28 | 0.001556 |
S | 1229 | M1229I | atG | atT | 5 | 5 | B.1.1.70 | 0.001705 |
S | 1229 | M1229I | atG | atT | 5 | 5 | B.1.177.33 | 0.008224 |
S | 1229 | M1229I | atG | atT | 5 | 5 | B.1.177.81 | 0.000947 |
S | 1229 | M1229I | atG | atA | 3 | 5 | B.1.221 | 0.000213 |
S | 1229 | M1229I | atG | atT | 2 | 5 | B.1.221 | 0.000142 |
S | 1229 | M1229T | aTg | aCg | 5 | 5 | B.1.351 | 0.000149 |
S | 1229 | M1229I | atG | atT | 5 | 5 | B.1.36 | 0.00073 |
S | 1229 | M1229V | Atg | Gtg | 5 | 5 | B.1.596 | 0.000436 |
S | 1229 | M1229I | atG | atT | 5 | 5 | B.1.6 | 0.086207 |
S | 1229 | M1229del | ATG | --- | 5 | 5 | B.1.617.2 | 0.000019 |
S | 1229 | M1229I | atG | atT | 3 | 5 | B.1.634 | 0.010274 |
S | 1229 | M1229I | atG | atA | 2 | 5 | B.1.634 | 0.006849 |
S | 1229 | M1229I | atG | atT | 4 | 5 | B.1.637 | 0.000292 |
S | 1229 | M1229I | atG | atC | 1 | 5 | B.1.637 | 0.000073 |
S | 1229 | M1229I | atG | atT | 5 | 5 | C.16 | 0.005302 |
S | 1229 | M1229I | atG | atT | 5 | 5 | P.1.15 | 0.001162 |
S | 1229 | M1229A | ATg | GCg | 2 | 4 | All | 0 |
S | 1229 | M1229A | ATG | GCA | 2 | 4 | All | 0 |
S | 1229 | M1229I | atG | atC | 4 | 4 | AY.101 | 0.001962 |
S | 1229 | M1229I | atG | atT | 4 | 4 | AY.113 | 0.00057 |
S | 1229 | M1229del | ATG | --- | 4 | 4 | AY.120 | 0.000149 |
S | 1229 | M1229T | aTg | aCg | 4 | 4 | AY.3 | 0.00004 |
S | 1229 | M1229T | aTg | aCg | 4 | 4 | B.1 | 0.000037 |
S | 1229 | M1229del | ATG | --- | 4 | 4 | B.1 | 0.000037 |
S | 1229 | M1229I | atG | atA | 4 | 4 | B.1.177.32 | 0.005398 |
S | 1229 | M1229V | Atg | Gtg | 4 | 4 | B.1.36 | 0.000584 |
S | 1229 | M1229I | atG | atT | 4 | 4 | B.1.427 | 0.000202 |
S | 1229 | M1229I | atG | atT | 4 | 4 | B.1.609 | 0.001918 |
S | 1229 | M1229I | atG | atT | 4 | 4 | P.1.10 | 0.001078 |
S | 1229 | M1229I | atG | atT | 4 | 4 | Q.1 | 0.000505 |
S | 1229 | M1229V | Atg | Gtg | 4 | 4 | Q.8 | 0.00066 |
S | 1229 | M1229I | atG | atT | 4 | 4 | R.1 | 0.00036 |
S | 1229 | M1229I | atG | atT | 3 | 3 | AY.106 | 0.001005 |
S | 1229 | M1229I | atG | atT | 3 | 3 | AY.110 | 0.000338 |
S | 1229 | M1229I | atG | atT | 2 | 3 | AY.111 | 0.000366 |
S | 1229 | M1229I | atG | atC | 1 | 3 | AY.111 | 0.000183 |
S | 1229 | M1229I | atG | atT | 2 | 3 | AY.29.1 | 0.000441 |
S | 1229 | M1229I | atG | atC | 1 | 3 | AY.29.1 | 0.000221 |
S | 1229 | M1229T | aTg | aCg | 3 | 3 | AY.43 | 0.000013 |
S | 1229 | M1229L | Atg | Ttg | 3 | 3 | AY.44 | 0.000018 |
S | 1229 | M1229I | atG | atC | 2 | 3 | AY.46.5 | 0.000397 |
S | 1229 | M1229I | atG | atT | 1 | 3 | AY.46.5 | 0.000198 |
S | 1229 | M1229I | atG | atT | 3 | 3 | AY.7 | 0.000588 |
S | 1229 | M1229I | atG | atT | 3 | 3 | AY.7.1 | 0.000338 |
S | 1229 | M1229I | atG | atT | 3 | 3 | AY.78 | 0.004622 |
S | 1229 | M1229I | atG | atA | 2 | 3 | B.1.1.25 | 0.001137 |
S | 1229 | M1229I | atG | atT | 1 | 3 | B.1.1.25 | 0.000569 |
S | 1229 | M1229I | atG | atT | 3 | 3 | B.1.1.337 | 0.010791 |
S | 1229 | M1229T | aTg | aCg | 3 | 3 | B.1.1.519 | 0.000119 |
S | 1229 | M1229I | atG | atT | 3 | 3 | B.1.1.63 | 0.001157 |
S | 1229 | M1229I | atG | atT | 3 | 3 | B.1.110.3 | 0.002155 |
S | 1229 | M1229I | atG | atA | 3 | 3 | B.1.160.16 | 0.002788 |
S | 1229 | M1229I | atG | atT | 3 | 3 | B.1.243 | 0.000209 |
S | 1229 | M1229K | aTg | aAg | 3 | 3 | B.1.351 | 0.000089 |
S | 1229 | M1229V | Atg | Gtg | 3 | 3 | B.1.351 | 0.000089 |
S | 1229 | M1229del | ATG | --- | 3 | 3 | B.1.36.17 | 0.001482 |
S | 1229 | M1229I | atG | atT | 3 | 3 | B.1.36.38 | 0.004926 |
S | 1229 | M1229I | atG | atT | 3 | 3 | B.1.396 | 0.002117 |
S | 1229 | M1229I | atG | atT | 2 | 3 | B.1.466.2 | 0.000782 |
S | 1229 | M1229I | atG | atA | 1 | 3 | B.1.466.2 | 0.000391 |
S | 1229 | M1229V | Atg | Gtg | 3 | 3 | B.1.517 | 0.001281 |
S | 1229 | M1229I | atG | atT | 3 | 3 | B.1.595 | 0.000783 |
S | 1229 | M1229I | atG | atA | 2 | 3 | B.1.597 | 0.009259 |
S | 1229 | M1229I | atG | atT | 1 | 3 | B.1.597 | 0.00463 |
S | 1229 | M1229I | atG | atT | 3 | 3 | B.1.605 | 0.017857 |
S | 1229 | M1229V | Atg | Gtg | 3 | 3 | B.1.617.2 | 0.000011 |
S | 1229 | M1229L | Atg | Ttg | 2 | 3 | B.1.617.2 | 0.000008 |
S | 1229 | M1229L | Atg | Ctg | 1 | 3 | B.1.617.2 | 0.000004 |
S | 1229 | M1229I | atG | atT | 3 | 3 | C.35 | 0.002322 |
S | 1229 | M1229A | ATG | GCA | 1 | 2 | 0.055556 | |
S | 1229 | M1229T | aTg | aCg | 1 | 2 | 0.055556 | |
S | 1229 | M1229T | aTG | aCA | 1 | 2 | 0.055556 | |
S | 1229 | M1229V | Atg | Gtg | 1 | 2 | 0.055556 | |
S | 1229 | M1229A | ATg | GCg | 1 | 2 | 0.055556 | |
S | 1229 | M1229V | AtG | GtA | 1 | 2 | 0.055556 | |
S | 1229 | M1229I | atG | atT | 2 | 2 | A.29 | 0.010638 |
S | 1229 | M1229N | aTG | aAC | 2 | 2 | All | 0 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.116 | 0.000574 |
S | 1229 | M1229L | Atg | Ttg | 2 | 2 | AY.116.1 | 0.000623 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.13 | 0.000322 |
S | 1229 | M1229L | Atg | Ttg | 2 | 2 | AY.20 | 0.000078 |
S | 1229 | M1229del | ATG | --- | 2 | 2 | AY.25 | 0.000012 |
S | 1229 | M1229I | atG | atA | 1 | 2 | AY.35 | 0.000233 |
S | 1229 | M1229I | atG | atT | 1 | 2 | AY.35 | 0.000233 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.38 | 0.000999 |
S | 1229 | M1229T | aTg | aCg | 2 | 2 | AY.39.1 | 0.000079 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.39.1 | 0.000079 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.40 | 0.001929 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.46 | 0.000208 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.46.3 | 0.001867 |
S | 1229 | M1229L | Atg | Ttg | 2 | 2 | AY.46.6 | 0.000144 |
S | 1229 | M1229L | Atg | Ttg | 2 | 2 | AY.5 | 0.000041 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.5.1 | 0.007519 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.50 | 0.001599 |
S | 1229 | M1229I | atG | atA | 2 | 2 | AY.52 | 0.001629 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.57 | 0.001312 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.74 | 0.000231 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.75 | 0.000112 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.75.1 | 0.000361 |
S | 1229 | M1229I | atG | atT | 2 | 2 | AY.92 | 0.000575 |
S | 1229 | M1229K | aTg | aAg | 2 | 2 | B.1 | 0.000018 |
S | 1229 | M1229del1 | atG | at- | 1 | 2 | B.1 | 0.000009 |
S | 1229 | M1229del1 | ATg | G-g | 1 | 2 | B.1 | 0.000009 |
S | 1229 | M1229del | ATG | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.1.1 | 0.000653 |
S | 1229 | M1229I | atG | atA | 2 | 2 | B.1.1.192 | 0.004619 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.1.214 | 0.000111 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.1.285 | 0.013072 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.1.316 | 0.00185 |
S | 1229 | M1229I | atG | atC | 1 | 2 | B.1.1.372 | 0.000689 |
S | 1229 | M1229I | atG | atT | 1 | 2 | B.1.1.372 | 0.000689 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.1.409 | 0.005666 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.1.434 | 0.000697 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.1.5 | 0.016667 |
S | 1229 | M1229A | ATg | GCg | 1 | 2 | B.1.1.7 | 0.000001 |
S | 1229 | M1229A | ATG | GCA | 1 | 2 | B.1.1.7 | 0.000001 |
S | 1229 | M1229del | ATG | --- | 2 | 2 | B.1.160 | 0.000062 |
S | 1229 | M1229I | atG | atA | 2 | 2 | B.1.177.18 | 0.00232 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.177.21 | 0.000153 |
S | 1229 | M1229del | ATG | --- | 2 | 2 | B.1.177.4 | 0.000422 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.177.58 | 0.002663 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.177.72 | 0.00678 |
S | 1229 | M1229V | Atg | Gtg | 2 | 2 | B.1.2 | 0.000018 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.234 | 0.000264 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.239 | 0.002442 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.240 | 0.000431 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.349 | 0.00143 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.36.17 | 0.000988 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.36.18 | 0.00084 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.36.29 | 0.001035 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.36.8 | 0.002 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.369 | 0.00057 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.391 | 0.002255 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.404 | 0.002604 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.497 | 0.00063 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.499 | 0.002101 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.576 | 0.001813 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.631 | 0.006734 |
S | 1229 | M1229I | atG | atT | 2 | 2 | B.1.93 | 0.001867 |
S | 1229 | M1229T | aTg | aCg | 2 | 2 | C.37 | 0.000232 |
S | 1229 | M1229I | atG | atA | 1 | 2 | C.37 | 0.000116 |
S | 1229 | M1229I | atG | atT | 1 | 2 | C.37 | 0.000116 |
S | 1229 | M1229I | atG | atT | 1 | 2 | D.2 | 0.000075 |
S | 1229 | M1229I | atG | atC | 1 | 2 | D.2 | 0.000075 |
S | 1229 | M1229I | atG | atT | 2 | 2 | N.4 | 0.008511 |
S | 1229 | M1229I | atG | atT | 1 | 2 | P.1.12 | 0.000484 |
S | 1229 | M1229I | atG | atA | 1 | 2 | P.1.12 | 0.000484 |
S | 1229 | M1229del | ATG | --- | 2 | 2 | P.1.15 | 0.000465 |
S | 1229 | M1229I | atG | atT | 2 | 2 | Q.4 | 0.00091 |
S | 1229 | M1229I | atG | atA | 1 | 1 | 0.055556 | |
S | 1229 | M1229I | atG | atT | 1 | 1 | A | 0.000387 |
S | 1229 | M1229I | atG | atT | 1 | 1 | A.19 | 0.009434 |
S | 1229 | M1229I | atG | atT | 1 | 1 | A.2.2 | 0.001689 |
S | 1229 | M1229I | atG | atT | 1 | 1 | A.21 | 0.00277 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AD.2 | 0.000219 |
S | 1229 | M1229del2 | ATg | --g | 1 | 1 | All | 0 |
S | 1229 | M1229R | aTg | aGg | 1 | 1 | All | 0 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.1 | 0.000396 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.102 | 0.000027 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.103 | 0.000006 |
S | 1229 | M1229I | atG | atC | 1 | 1 | AY.104 | 0.001984 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.107 | 0.000466 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.108 | 0.001103 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.11 | 0.001339 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.111 | 0.000183 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.117 | 0.000085 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.118 | 0.000063 |
S | 1229 | M1229L | Atg | Ctg | 1 | 1 | AY.119 | 0.000035 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.12 | 0.000316 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.13 | 0.000161 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.13 | 0.000161 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.14 | 0.000088 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.16.1 | 0.00047 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.22 | 0.002092 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.23 | 0.00007 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.23 | 0.00007 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.23 | 0.00007 |
S | 1229 | M1229I | atG | atC | 1 | 1 | AY.23.1 | 0.000417 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.24 | 0.000431 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.25 | 0.000006 |
S | 1229 | M1229L | Atg | Ctg | 1 | 1 | AY.25 | 0.000006 |
S | 1229 | M1229del1 | Atg | -tg | 1 | 1 | AY.26 | 0.000028 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.26 | 0.000028 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.29 | 0.000016 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.32 | 0.000532 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.33 | 0.000067 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.34 | 0.000097 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.35 | 0.000233 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.37 | 0.000316 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.39 | 0.000025 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.39.1 | 0.00004 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.4.2 | 0.000022 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 1229 | M1229del1 | atG | at- | 1 | 1 | AY.4.5 | 0.000107 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.41 | 0.000294 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.42 | 0.00004 |
S | 1229 | M1229N | aTG | aAC | 1 | 1 | AY.42 | 0.00004 |
S | 1229 | M1229K | aTg | aAg | 1 | 1 | AY.43 | 0.000004 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.43 | 0.000004 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.43 | 0.000004 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.44 | 0.000006 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.44 | 0.000006 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.47 | 0.000031 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.5 | 0.000021 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.5 | 0.000021 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.5.4 | 0.000277 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.51 | 0.000909 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.52 | 0.000814 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.54 | 0.000095 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.6 | 0.000041 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.60 | 0.000938 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.61 | 0.000105 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.62 | 0.000436 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.66 | 0.00107 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.68 | 0.000274 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.70 | 0.000209 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.71 | 0.000475 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.74 | 0.000116 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.81 | 0.001992 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.82 | 0.001357 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.84 | 0.000437 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.85 | 0.000427 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.88 | 0.000884 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | AY.9 | 0.000068 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.9.1 | 0.000084 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.9.1 | 0.000084 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.9.1 | 0.000084 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.9.2 | 0.000037 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.9.2 | 0.000037 |
S | 1229 | M1229L | AtG | CtT | 1 | 1 | AY.9.2 | 0.000037 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.90 | 0.000684 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.95 | 0.000761 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.95 | 0.000761 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AY.97 | 0.001701 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | AY.98.1 | 0.000048 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | AY.99.2 | 0.000092 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | AY.99.2 | 0.000092 |
S | 1229 | M1229I | atG | atT | 1 | 1 | AZ.2 | 0.000821 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B | 0.000128 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B | 0.000128 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | B.1 | 0.000009 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | B.1.1 | 0.000018 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.118 | 0.010204 |
S | 1229 | M1229K | aTg | aAg | 1 | 1 | B.1.1.214 | 0.000055 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.232 | 0.001815 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.244 | 0.015385 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.277 | 0.000759 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.317 | 0.000412 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.329 | 0.003846 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.1.33 | 0.000421 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.348 | 0.000796 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.374 | 0.002375 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.404 | 0.015873 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.416 | 0.000905 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.1.434 | 0.000349 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.448 | 0.002033 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.46 | 0.004367 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.47 | 0.005348 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.484 | 0.1 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.1.521 | 0.005348 |
S | 1229 | M1229I | atG | atA | 1 | 1 | B.1.1.523 | 0.001563 |
S | 1229 | M1229N | aTG | aAC | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1229 | M1229del2 | ATg | --g | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1229 | M1229R | aTg | aGg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | B.1.1.70 | 0.000341 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.111 | 0.001175 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.118 | 0.006711 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.126 | 0.001276 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.147 | 0.000756 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B.1.160 | 0.000031 |
S | 1229 | M1229L | Atg | Ctg | 1 | 1 | B.1.160 | 0.000031 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | B.1.160.14 | 0.002119 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.160.30 | 0.002976 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | B.1.177 | 0.000013 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B.1.177 | 0.000013 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.177.10 | 0.000878 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.177.12 | 0.000152 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.177.19 | 0.001431 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.177.53 | 0.002392 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 1229 | M1229K | aTg | aAg | 1 | 1 | B.1.177.57 | 0.000281 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.177.73 | 0.000566 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B.1.177.85 | 0.005435 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B.1.181 | 0.019608 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.210 | 0.002132 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.22 | 0.001318 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.23 | 0.006061 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.232 | 0.000537 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.235 | 0.002519 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.241 | 0.000812 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B.1.243 | 0.00007 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | B.1.258 | 0.000067 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.258.17 | 0.000104 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.260 | 0.003344 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | B.1.298 | 0.002114 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.298 | 0.002114 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.305 | 0.002151 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.311 | 0.000275 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | B.1.351 | 0.00003 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | B.1.356 | 0.001727 |
S | 1229 | M1229I | atG | atA | 1 | 1 | B.1.36.1 | 0.00114 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.36.39 | 0.002217 |
S | 1229 | M1229T | aTG | aCA | 1 | 1 | B.1.362 | 0.001541 |
S | 1229 | M1229I | atG | atA | 1 | 1 | B.1.362 | 0.001541 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.389 | 0.001002 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.400 | 0.000429 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.409 | 0.000781 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.416 | 0.001269 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.423 | 0.010204 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.428 | 0.00102 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | B.1.429 | 0.000024 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.441 | 0.009615 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.474 | 0.001901 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.478 | 0.011765 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.485 | 0.014925 |
S | 1229 | M1229I | atG | atA | 1 | 1 | B.1.517 | 0.000427 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.537 | 0.02 |
S | 1229 | M1229I | atG | atA | 1 | 1 | B.1.538 | 0.008065 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B.1.561 | 0.000397 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.565 | 0.00081 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.577 | 0.000687 |
S | 1229 | M1229L | Atg | Ctg | 1 | 1 | B.1.580 | 0.004065 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.588 | 0.00091 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.599 | 0.00365 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.607 | 0.052632 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.617.3 | 0.002985 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.620 | 0.000946 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | B.1.623 | 0.000536 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.627 | 0.00202 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.633 | 0.041667 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.1.9.5 | 0.005682 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.23 | 0.002924 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.4 | 0.002208 |
S | 1229 | M1229I | atG | atT | 1 | 1 | B.4.1 | 0.018868 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | C.17 | 0.055556 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | C.29 | 0.0625 |
S | 1229 | M1229I | atG | atT | 1 | 1 | C.33 | 0.058824 |
S | 1229 | M1229I | atG | atT | 1 | 1 | C.36 | 0.000911 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | D.2 | 0.000075 |
S | 1229 | M1229del1 | atG | at- | 1 | 1 | D.2 | 0.000075 |
S | 1229 | M1229I | atG | atC | 1 | 1 | N.5 | 0.001767 |
S | 1229 | M1229L | Atg | Ctg | 1 | 1 | P.1 | 0.000016 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | P.1 | 0.000016 |
S | 1229 | M1229V | Atg | Gtg | 1 | 1 | P.1.13 | 0.000898 |
S | 1229 | M1229I | atG | atT | 1 | 1 | P.1.13 | 0.000898 |
S | 1229 | M1229L | Atg | Ttg | 1 | 1 | P.1.15 | 0.000232 |
S | 1229 | M1229I | atG | atT | 1 | 1 | P.1.7 | 0.000319 |
S | 1229 | M1229T | aTg | aCg | 1 | 1 | P.2 | 0.000187 |
S | 1229 | M1229I | atG | atT | 1 | 1 | P.3 | 0.001595 |
S | 1229 | M1229I | atG | atT | 1 | 1 | Q.6 | 0.006623 |
S | 1229 | M1229I | atG | atT | 1 | 1 | S.1 | 0.00495 |
S | 1229 | M1229del | ATG | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|