CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1228 & Codon = Cta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1228V1228LnonsynGtaCta118337770.065663825244-25246

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1228V1228LGtaCta77711833All0.000149
S1228V1228LGtaCta1062535AY.40.000165
S1228V1228LGtaCta681852B.1.1.70.000061
S1228V1228LGtaCta11683B.1.5960.000087
S1228V1228LGtaCta73620B.1.617.20.000275
S1228V1228LGtaCta74317AY.440.00045
S1228V1228LGtaCta21294AY.430.000093
S1228V1228LGtaCta12265AY.390.000297
S1228V1228LGtaCta11265P.10.000173
S1228V1228LGtaCta6237B.10.000055
S1228V1228LGtaCta8215B.1.20.00007
S1228V1228LGtaCta3161AY.1030.000019
S1228V1228LGtaCta81115AY.290.001278
S1228V1228LGtaCta13111AY.1020.000345
S1228V1228LGtaCta189B.1.10.000018
S1228V1228LGtaCta1780AY.250.000102
S1228V1228LGtaCta2864AY.30.000278
S1228V1228LGtaCta5858AY.20.020655
S1228V1228LGtaCta258B.1.1600.000062
S1228V1228LGtaCta344B.1.1770.00004
S1228V1228LGtaCta241B.1.1.5190.000079
S1228V1228LGtaCta240B.1.258.170.000208
S1228V1228LGtaCta438AY.200.000155
S1228V1228LGtaCta130AY.410.000294
S1228V1228LGtaCta629AY.260.00017
S1228V1228LGtaCta229B.1.2430.000139
S1228V1228LGtaCta227AY.9.20.000073
S1228V1228LGtaCta2627AY.920.007469
S1228V1228LGtaCta322AY.330.0002
S1228V1228LGtaCta221B.1.4270.000101
S1228V1228LGtaCta121D.20.000075
S1228V1228LGtaCta320P.1.140.000143
S1228V1228LGtaCta219AY.1200.000074
S1228V1228LGtaCta217AY.60.000082
S1228V1228LGtaCta217AY.90.000135
S1228V1228LGtaCta117B.1.5250.000113
S1228V1228LGtaCta416AY.610.000419
S1228V1228LGtaCta316B.1.6210.000266
S1228V1228LGtaCta315C.370.000348
S1228V1228LGtaCta114AY.420.00004
S1228V1228LGtaCta213AY.1190.000071
S1228V1228LGtaCta213AY.230.000139
S1228V1228LGtaCta313AY.980.000237
S1228V1228LGtaCta413B.1.3510.000119
S1228V1228LGtaCta1313B.1.3900.138298
S1228V1228LGtaCta611B.1.6280.002114
S1228V1228LGtaCta310B.1.2340.000396
S1228V1228LGtaCta39AY.4.50.000322
S1228V1228LGtaCta19AY.540.000095
S1228V1228LGtaCta99B.1.5230.022059
S1228V1228LGtaCta28B.1.1.3180.000604
S1228V1228LGtaCta77AU.20.016949
S1228V1228LGtaCta67AY.29.10.001323
S1228V1228LGtaCta27AY.4.20.000043
S1228V1228LGtaCta17B0.000128
S1228V1228LGtaCta27B.1.1.2160.001781
S1228V1228LGtaCta17B.1.5640.000426
S1228V1228LGtaCta16AY.39.10.00004
S1228V1228LGtaCta26AY.98.10.000097
S1228V1228LGtaCta55A0.001935
S1228V1228LGtaCta15AY.270.000065
S1228V1228LGtaCta45AY.360.000593
S1228V1228LGtaCta15AY.99.20.000092
S1228V1228LGtaCta15B.1.617.10.000129
S1228V1228LGtaCta14AY.34.10.00051
S1228V1228LGtaCta14AY.380.000499
S1228V1228LGtaCta14AY.710.000475
S1228V1228LGtaCta44B.1.2410.003247
S1228V1228LGtaCta13AY.120.000316
S1228V1228LGtaCta33AY.570.001969
S1228V1228LGtaCta23AY.7.10.000225
S1228V1228LGtaCta33B.1.1.1120.176471
S1228V1228LGtaCta13B.1.177.810.000189
S1228V1228LGtaCta13B.1.2390.001221
S1228V1228LGtaCta12AY.1070.000466
S1228V1228LGtaCta12AY.1180.000063
S1228V1228LGtaCta12AY.5.40.000277
S1228V1228LGtaCta12AY.9.10.000084
S1228V1228LGtaCta12B.1.1.3110.000358
S1228V1228LGtaCta12B.1.177.210.000076
S1228V1228LGtaCta12B.1.36.170.000494
S1228V1228LGtaCta12B.1.6270.00202
S1228V1228LGtaCta11AY.520.000814
S1228V1228LGtaCta11AY.530.000288
S1228V1228LGtaCta11AZ.10.000867
S1228V1228LGtaCta11B.1.1.2820.011628
S1228V1228LGtaCta11B.1.1.3480.000796
S1228V1228LGtaCta11B.1.1.410.006329
S1228V1228LGtaCta11B.1.177.180.00116
S1228V1228LGtaCta11B.1.36.350.002604
S1228V1228LGtaCta11B.1.3980.002976
S1228V1228LGtaCta11B.1.4090.000781
S1228V1228LGtaCta11B.1.4690.00361

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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