CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1208

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1208Q1208HnonsyncaGcaT267926720.99738725184-25186
S1208Q1208HnonsyncaGcaC267970.0026129225184-25186
S1208Q1208QsyncaGcaA486486125184-25186
S1208Q1208EnonsynCagGag246246125184-25186
S1208Q1208deldelCAG---114114125184-25186
S1208Q1208XnonsynCagTag56550.98214325184-25186
S1208Q1208XnonsynCaGTaA5610.017857125184-25186
S1208Q1208KnonsynCagAag4848125184-25186
S1208Q1208LnonsyncAgcTg38350.92105325184-25186
S1208Q1208LnonsyncAGcTA3810.026315825184-25186
S1208Q1208LnonsynCAgTTg3810.026315825184-25186
S1208Q1208LnonsynCAGTTA3810.026315825184-25186
S1208Q1208RnonsyncAgcGg3232125184-25186
S1208Q1208PnonsyncAgcCg1010125184-25186
S1208Q1208YnonsynCaGTaT77125184-25186
S1208Q1208del1delCag-ag11125184-25186

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1208Q1208HcaGcaT26722679All0.000511
S1208Q1208HcaGcaC72679All0.000001
S1208Q1208HcaGcaT574575B.1.1.70.000514
S1208Q1208HcaGcaC1575B.1.1.70.000001
S1208Q1208QcaGcaA486486All0.000093
S1208Q1208QcaGcaA412412B.1.1.70.000369
S1208Q1208HcaGcaT254254AY.9.20.009329
S1208Q1208ECagGag246246All0.000047
S1208Q1208HcaGcaT238239AY.40.00037
S1208Q1208HcaGcaC1239AY.40.000002
S1208Q1208HcaGcaT206206B.1.1.3180.062161
S1208Q1208delCAG---114114All0.000022
S1208Q1208HcaGcaT9898B.1.617.20.000369
S1208Q1208HcaGcaT9696B.1.20.000845
S1208Q1208HcaGcaT7777AY.440.000469
S1208Q1208HcaGcaT7272AY.1030.000447
S1208Q1208HcaGcaT6060AY.250.000361
S1208Q1208HcaGcaT5959B.1.1.550.766234
S1208Q1208XCagTag5556All0.000011
S1208Q1208XCaGTaA156All0
S1208Q1208ECagGag5151AY.250.000307
S1208Q1208HcaGcaT4949B.1.5260.001152
S1208Q1208KCagAag4848All0.000009
S1208Q1208HcaGcaT4848AY.4.20.001041
S1208Q1208HcaGcaT4848B.10.00044
S1208Q1208ECagGag4545AY.1030.000279
S1208Q1208HcaGcaT4242AY.430.000186
S1208Q1208ECagGag4040AY.40.000062
S1208Q1208HcaGcaT4040B.1.1770.000527
S1208Q1208delCAG---3939B.1.1.70.000035
S1208Q1208LcAgcTg3538All0.000007
S1208Q1208LCAGTTA138All0
S1208Q1208LcAGcTA138All0
S1208Q1208LCAgTTg138All0
S1208Q1208HcaGcaT3434AY.200.001321
S1208Q1208RcAgcGg3232All0.000006
S1208Q1208HcaGcaT2930AY.1020.000769
S1208Q1208HcaGcaC130AY.1020.000027
S1208Q1208HcaGcaT2929B.1.2580.00193
S1208Q1208HcaGcaT2626AY.30.000259
S1208Q1208HcaGcaT2626AY.9.10.002177
S1208Q1208HcaGcaT2526B.1.10.000454
S1208Q1208HcaGcaC126B.1.10.000018
S1208Q1208HcaGcaT2626B.1.1.4511
S1208Q1208HcaGcaT2424AY.390.000593
S1208Q1208ECagGag2020AY.440.000122
S1208Q1208KCagAag1515AY.40.000023
S1208Q1208HcaGcaT1515B.1.1.5190.000596
S1208Q1208HcaGcaT1515B.1.3510.000446
S1208Q1208HcaGcaT1415P.10.000221
S1208Q1208HcaGcaC115P.10.000016
S1208Q1208HcaGcaT1414AY.98.10.000678
S1208Q1208HcaGcaT1414B.1.5250.001584
S1208Q1208QcaGcaA1313B.1.1.2190.065
S1208Q1208QcaGcaA1313B.1.1770.000171
S1208Q1208ECagGag1212AY.430.000053
S1208Q1208RcAgcGg1212B.1.1.70.000011
S1208Q1208HcaGcaT1212B.1.2430.000835
S1208Q1208HcaGcaT1212B.1.4330.038339
S1208Q1208HcaGcaT1111AY.260.000311
S1208Q1208HcaGcaT1111B.1.1.3980.035484
S1208Q1208delCAG---1111B.1.1770.000145
S1208Q1208HcaGcaT1111B.1.3800.072848
S1208Q1208PcAgcCg1010All0.000002
S1208Q1208XCagTag1010B.10.000092
S1208Q1208ECagGag1010B.1.1.70.000009
S1208Q1208HcaGcaT1010B.1.5960.000871
S1208Q1208HcaGcaT99AY.330.000601
S1208Q1208HcaGcaT99B.1.3490.006433
S1208Q1208HcaGcaT99P.1.170.001456
S1208Q1208HcaGcaT88AY.1130.001139
S1208Q1208delCAG---88AY.4.50.00086
S1208Q1208XCagTag88B.1.1.70.000007
S1208Q1208LcAgcTg88B.1.20.00007
S1208Q1208ECagGag88B.1.438.10.000858
S1208Q1208HcaGcaT88B.1.6200.007569
S1208Q1208YCaGTaT77All0.000001
S1208Q1208HcaGcaT77AY.290.00011
S1208Q1208HcaGcaT77AY.3.10.000597
S1208Q1208HcaGcaT77AY.420.000282
S1208Q1208HcaGcaT77AY.60.000288
S1208Q1208HcaGcaT77AY.610.000733
S1208Q1208HcaGcaT77B.1.1.3820.25
S1208Q1208HcaGcaT77B.1.1.4340.00244
S1208Q1208KCagAag77B.1.1.70.000006
S1208Q1208HcaGcaT77B.1.2210.000497
S1208Q1208HcaGcaT77B.1.4290.000165
S1208Q1208ECagGag77B.1.4290.000165
S1208Q1208ECagGag77B.1.617.20.000026
S1208Q1208ECagGag77P.10.00011
S1208Q1208HcaGcaT66AY.1190.000212
S1208Q1208delCAG---66AY.1200.000223
S1208Q1208HcaGcaT66AY.160.002278
S1208Q1208HcaGcaT66AY.280.011342
S1208Q1208YCaGTaT66B.1.258.170.000624
S1208Q1208HcaGcaT66B.1.36.290.003104
S1208Q1208QcaGcaA55AY.20.001781
S1208Q1208RcAgcGg55AY.40.000008
S1208Q1208LcAgcTg55AY.4.20.000108
S1208Q1208KCagAag55AY.420.000201
S1208Q1208HcaGcaT55B.1.1.3060.002192
S1208Q1208HcaGcaT55B.1.466.20.001956
S1208Q1208HcaGcaT55B.1.617.10.000645
S1208Q1208HcaGcaT55C.370.00058
S1208Q1208XCagTag55D.20.000375
S1208Q1208HcaGcaT55Q.80.000825
S1208Q1208LcAgcTg140.055556
S1208Q1208LCAgTTg140.055556
S1208Q1208LCAGTTA140.055556
S1208Q1208LcAGcTA140.055556
S1208Q1208HcaGcaT44AE.80.001956
S1208Q1208HcaGcaT44AY.1000.000184
S1208Q1208QcaGcaA44AY.360.000593
S1208Q1208delCAG---44AY.40.000006
S1208Q1208HcaGcaT44AY.46.40.000658
S1208Q1208HcaGcaT44AY.470.000124
S1208Q1208HcaGcaT44AY.7.10.000451
S1208Q1208HcaGcaT44AY.750.000224
S1208Q1208HcaGcaT44B.1.1.5070.034783
S1208Q1208QcaGcaA44B.1.1630.097561
S1208Q1208HcaGcaT44D.20.0003
S1208Q1208HcaGcaT44P.1.150.000929
S1208Q1208HcaGcaT44P.20.000747
S1208Q1208HcaGcaT33AY.1060.001005
S1208Q1208HcaGcaT33AY.1200.000112
S1208Q1208HcaGcaT33AY.1210.000406
S1208Q1208HcaGcaT33AY.140.000264
S1208Q1208HcaGcaT33AY.270.000194
S1208Q1208HcaGcaT33AY.320.001597
S1208Q1208LcAgcTg33AY.330.0002
S1208Q1208PcAgcCg33AY.40.000005
S1208Q1208HcaGcaT33AY.4.30.002525
S1208Q1208HcaGcaT33AY.46.50.000595
S1208Q1208HcaGcaT33AY.46.60.000217
S1208Q1208HcaGcaT33AY.50.000062
S1208Q1208QcaGcaA33B.10.000027
S1208Q1208delCAG---33B.10.000027
S1208Q1208XCagTag33B.1.10.000054
S1208Q1208delCAG---33B.1.177.40.000633
S1208Q1208XCagTag33B.1.20.000026
S1208Q1208QcaGcaA33B.1.360.000438
S1208Q1208HcaGcaT33B.1.360.000438
S1208Q1208ECagGag33B.1.3610.003866
S1208Q1208QcaGcaA33B.1.4290.000071
S1208Q1208delCAG---33B.1.617.20.000011
S1208Q1208KCagAag33B.1.617.20.000011
S1208Q1208HcaGcaT33B.1.617.30.008955
S1208Q1208HcaGcaT23P.1.140.000096
S1208Q1208HcaGcaC13P.1.140.000048
S1208Q1208delCAG---33P.1.150.000697
S1208Q1208XCagTag120.055556
S1208Q1208XCaGTaA120.055556
S1208Q1208QcaGcaA22A.10.000564
S1208Q1208RcAgcGg22AY.1030.000012
S1208Q1208HcaGcaT22AY.1080.002205
S1208Q1208KCagAag22AY.1190.000071
S1208Q1208ECagGag22AY.200.000078
S1208Q1208LcAgcTg22AY.200.000078
S1208Q1208HcaGcaT22AY.230.000139
S1208Q1208delCAG---22AY.250.000012
S1208Q1208LcAgcTg22AY.30.00002
S1208Q1208HcaGcaT22AY.380.000999
S1208Q1208LcAgcTg22AY.40.000003
S1208Q1208QcaGcaA22AY.40.000003
S1208Q1208PcAgcCg22AY.4.50.000215
S1208Q1208QcaGcaA22AY.4.50.000215
S1208Q1208LcAgcTg22AY.420.00008
S1208Q1208KCagAag22AY.440.000012
S1208Q1208HcaGcaT22AY.450.000243
S1208Q1208HcaGcaT22AY.460.000208
S1208Q1208LcAgcTg22AY.50.000041
S1208Q1208HcaGcaT22AY.550.001835
S1208Q1208HcaGcaT22AY.590.001059
S1208Q1208delCAG---22AY.60.000082
S1208Q1208HcaGcaT22AY.75.10.000361
S1208Q1208HcaGcaT22AY.820.002714
S1208Q1208ECagGag22AY.90.000135
S1208Q1208HcaGcaT22AY.980.000158
S1208Q1208KCagAag22B.1.10.000036
S1208Q1208QcaGcaA22B.1.10.000036
S1208Q1208HcaGcaT22B.1.1.2140.000111
S1208Q1208HcaGcaT22B.1.1.2650.006309
S1208Q1208HcaGcaT22B.1.1.2980.001724
S1208Q1208HcaGcaT22B.1.1.3160.00185
S1208Q1208ECagGag22B.1.1.4320.002532
S1208Q1208ECagGag22B.1.1.5190.000079
S1208Q1208LcAgcTg22B.1.1.70.000002
S1208Q1208ECagGag22B.1.1600.000062
S1208Q1208HcaGcaT22B.1.177.160.001329
S1208Q1208delCAG---22B.1.177.540.001213
S1208Q1208ECagGag22B.1.20.000018
S1208Q1208HcaGcaT22B.1.3240.00321
S1208Q1208HcaGcaT22B.1.36.10.002281
S1208Q1208KCagAag22B.1.4270.000101
S1208Q1208XCagTag22B.1.4290.000047
S1208Q1208HcaGcaT22B.1.438.10.000215
S1208Q1208HcaGcaT22B.1.5950.000522
S1208Q1208HcaGcaT22B.1.6040.034483
S1208Q1208QcaGcaA22B.1.617.20.000008
S1208Q1208RcAgcGg22B.1.6200.001892
S1208Q1208HcaGcaT22B.1.6210.000177
S1208Q1208HcaGcaT22B.1.6230.001073
S1208Q1208HcaGcaT22C.1.20.008511
S1208Q1208HcaGcaT22P.1.70.000639
S1208Q1208QcaGcaA110.055556
S1208Q1208HcaGcaT11A0.000387
S1208Q1208HcaGcaT11A.10.000282
S1208Q1208ECagGag11A.20.000662
S1208Q1208XCagTag11A.2.20.001689
S1208Q1208del1Cag-ag11All0
S1208Q1208RcAgcGg11AY.10.000396
S1208Q1208HcaGcaT11AY.10.000396
S1208Q1208ECagGag11AY.1020.000027
S1208Q1208XCagTag11AY.1030.000006
S1208Q1208HcaGcaT11AY.1050.000643
S1208Q1208ECagGag11AY.1060.000335
S1208Q1208HcaGcaT11AY.1090.00074
S1208Q1208delCAG---11AY.1110.000183
S1208Q1208HcaGcaT11AY.1150.005208
S1208Q1208HcaGcaT11AY.1170.000085
S1208Q1208HcaGcaT11AY.1180.000063
S1208Q1208delCAG---11AY.1180.000063
S1208Q1208QcaGcaA11AY.1190.000035
S1208Q1208HcaGcaC11AY.120.2.10.000498
S1208Q1208HcaGcaT11AY.130.000161
S1208Q1208ECagGag11AY.160.00038
S1208Q1208HcaGcaT11AY.20.000356
S1208Q1208QcaGcaA11AY.200.000039
S1208Q1208KCagAag11AY.200.000039
S1208Q1208ECagGag11AY.230.00007
S1208Q1208delCAG---11AY.230.00007
S1208Q1208QcaGcaA11AY.230.00007
S1208Q1208LcAgcTg11AY.23.10.000417
S1208Q1208delCAG---11AY.240.000431
S1208Q1208HcaGcaT11AY.240.000431
S1208Q1208XCagTag11AY.250.000006
S1208Q1208QcaGcaA11AY.250.000006
S1208Q1208ECagGag11AY.30.00001
S1208Q1208QcaGcaA11AY.3.10.000085
S1208Q1208KCagAag11AY.300.000396
S1208Q1208ECagGag11AY.320.000532
S1208Q1208delCAG---11AY.330.000067
S1208Q1208ECagGag11AY.340.000097
S1208Q1208HcaGcaT11AY.34.10.00051
S1208Q1208HcaGcaT11AY.360.000148
S1208Q1208XCagTag11AY.380.000499
S1208Q1208LcAgcTg11AY.390.000025
S1208Q1208XCagTag11AY.390.000025
S1208Q1208KCagAag11AY.390.000025
S1208Q1208ECagGag11AY.390.000025
S1208Q1208ECagGag11AY.39.10.00004
S1208Q1208HcaGcaT11AY.39.10.00004
S1208Q1208XCagTag11AY.40.000002
S1208Q1208HcaGcaT11AY.4.2.10.000149
S1208Q1208HcaGcaT11AY.4.50.000107
S1208Q1208XCagTag11AY.420.00004
S1208Q1208RcAgcGg11AY.430.000004
S1208Q1208QcaGcaA11AY.430.000004
S1208Q1208QcaGcaA11AY.440.000006
S1208Q1208PcAgcCg11AY.440.000006
S1208Q1208delCAG---11AY.46.20.000635
S1208Q1208ECagGag11AY.470.000031
S1208Q1208HcaGcaT11AY.490.003195
S1208Q1208ECagGag11AY.50.000021
S1208Q1208delCAG---11AY.50.000021
S1208Q1208RcAgcGg11AY.50.000021
S1208Q1208HcaGcaT11AY.5.40.000277
S1208Q1208HcaGcaT11AY.510.000909
S1208Q1208HcaGcaT11AY.570.000656
S1208Q1208QcaGcaA11AY.570.000656
S1208Q1208HcaGcaT11AY.580.000907
S1208Q1208ECagGag11AY.60.000041
S1208Q1208ECagGag11AY.610.000105
S1208Q1208PcAgcCg11AY.620.000436
S1208Q1208XCagTag11AY.620.000436
S1208Q1208HcaGcaT11AY.620.000436
S1208Q1208delCAG---11AY.680.000274
S1208Q1208HcaGcaT11AY.690.000187
S1208Q1208ECagGag11AY.7.20.000559
S1208Q1208HcaGcaT11AY.7.20.000559
S1208Q1208LcAgcTg11AY.750.000056
S1208Q1208delCAG---11AY.810.001992
S1208Q1208ECagGag11AY.850.000427
S1208Q1208HcaGcaT11AY.890.004902
S1208Q1208delCAG---11AY.90.000068
S1208Q1208RcAgcGg11AY.90.000068
S1208Q1208PcAgcCg11AY.90.000068
S1208Q1208RcAgcGg11AY.9.10.000084
S1208Q1208HcaGcaT11AY.920.000287
S1208Q1208HcaGcaT11AY.930.000273
S1208Q1208HcaGcaT11AY.950.000761
S1208Q1208RcAgcGg11AY.98.10.000048
S1208Q1208ECagGag11AY.98.10.000048
S1208Q1208HcaGcaT11AY.99.20.000092
S1208Q1208HcaGcaT11AZ.20.000821
S1208Q1208XCagTag11B0.000128
S1208Q1208KCagAag11B.10.000009
S1208Q1208delCAG---11B.1.10.000018
S1208Q1208PcAgcCg11B.1.10.000018
S1208Q1208delCAG---11B.1.1.1390.022727
S1208Q1208delCAG---11B.1.1.1590.004673
S1208Q1208HcaGcaT11B.1.1.1630.007634
S1208Q1208QcaGcaA11B.1.1.1640.005155
S1208Q1208HcaGcaT11B.1.1.1920.002309
S1208Q1208HcaGcaT11B.1.1.2190.005
S1208Q1208ECagGag11B.1.1.2200.001859
S1208Q1208HcaGcaT11B.1.1.2200.001859
S1208Q1208QcaGcaA11B.1.1.2220.000204
S1208Q1208HcaGcaT11B.1.1.2220.000204
S1208Q1208HcaGcaT11B.1.1.2550.00303
S1208Q1208HcaGcaT11B.1.1.2580.003257
S1208Q1208KCagAag11B.1.1.2650.003155
S1208Q1208HcaGcaT11B.1.1.2660.012195
S1208Q1208HcaGcaT11B.1.1.2750.011236
S1208Q1208HcaGcaT11B.1.1.280.000311
S1208Q1208HcaGcaT11B.1.1.2840.000107
S1208Q1208ECagGag11B.1.1.2940.001266
S1208Q1208XCagTag11B.1.1.3110.000358
S1208Q1208QcaGcaA11B.1.1.3160.000925
S1208Q1208RcAgcGg11B.1.1.3160.000925
S1208Q1208HcaGcaT11B.1.1.3260.001761
S1208Q1208XCagTag11B.1.1.3720.000689
S1208Q1208HcaGcaT11B.1.1.390.00051
S1208Q1208HcaGcaT11B.1.1.4320.001266
S1208Q1208QcaGcaA11B.1.1.5190.00004
S1208Q1208PcAgcCg11B.1.1.70.000001
S1208Q1208del1Cag-ag11B.1.1.70.000001
S1208Q1208XCagTag11B.1.1270.002198
S1208Q1208HcaGcaT11B.1.1390.000733
S1208Q1208HcaGcaT11B.1.1600.000031
S1208Q1208XCagTag11B.1.1600.000031
S1208Q1208delCAG---11B.1.160.230.004831
S1208Q1208HcaGcaT11B.1.160.240.004425
S1208Q1208ECagGag11B.1.1770.000013
S1208Q1208KCagAag11B.1.1770.000013
S1208Q1208XCagTag11B.1.1770.000013
S1208Q1208XCagTag11B.1.177.150.000631
S1208Q1208delCAG---11B.1.177.170.000821
S1208Q1208RcAgcGg11B.1.177.170.000821
S1208Q1208delCAG---11B.1.177.210.000076
S1208Q1208HcaGcaT11B.1.177.330.001645
S1208Q1208HcaGcaT11B.1.177.450.000381
S1208Q1208HcaGcaT11B.1.177.600.000218
S1208Q1208delCAG---11B.1.177.690.001484
S1208Q1208RcAgcGg11B.1.177.70.000165
S1208Q1208KCagAag11B.1.20.000009
S1208Q1208HcaGcaT11B.1.2100.002132
S1208Q1208delCAG---11B.1.2180.005155
S1208Q1208delCAG---11B.1.221.10.002907
S1208Q1208HcaGcaT11B.1.2320.000537
S1208Q1208KCagAag11B.1.2430.00007
S1208Q1208YCaGTaT11B.1.2580.000067
S1208Q1208delCAG---11B.1.2580.000067
S1208Q1208XCagTag11B.1.2580.000067
S1208Q1208HcaGcaT11B.1.258.170.000104
S1208Q1208HcaGcaT11B.1.2600.003344
S1208Q1208XCagTag11B.1.3060.005714
S1208Q1208LcAgcTg11B.1.3150.006061
S1208Q1208QcaGcaA11B.1.3510.00003
S1208Q1208ECagGag11B.1.351.30.000876
S1208Q1208XCagTag11B.1.36.10.00114
S1208Q1208delCAG---11B.1.36.170.000494
S1208Q1208HcaGcaT11B.1.36.80.001
S1208Q1208HcaGcaT11B.1.3620.001541
S1208Q1208RcAgcGg11B.1.3630.012987
S1208Q1208HcaGcaT11B.1.3690.000285
S1208Q1208HcaGcaT11B.1.4000.000429
S1208Q1208XCagTag11B.1.4040.001302
S1208Q1208HcaGcaT11B.1.4050.012346
S1208Q1208LcAgcTg11B.1.4080.00369
S1208Q1208HcaGcaT11B.1.4090.000781
S1208Q1208delCAG---11B.1.4090.000781
S1208Q1208HcaGcaT11B.1.4160.001269
S1208Q1208ECagGag11B.1.4270.00005
S1208Q1208HcaGcaT11B.1.4780.011765
S1208Q1208XCagTag11B.1.5230.002451
S1208Q1208HcaGcaT11B.1.5240.001406
S1208Q1208QcaGcaA11B.1.5250.000113
S1208Q1208HcaGcaT11B.1.5380.008065
S1208Q1208HcaGcaT11B.1.5640.000426
S1208Q1208HcaGcaT11B.1.5760.000907
S1208Q1208HcaGcaT11B.1.5870.001898
S1208Q1208XCagTag11B.1.5900.004545
S1208Q1208delCAG---11B.1.5960.000087
S1208Q1208LcAgcTg11B.1.5960.000087
S1208Q1208KCagAag11B.1.6050.005952
S1208Q1208HcaGcaT11B.1.6100.003546
S1208Q1208XCagTag11B.1.617.20.000004
S1208Q1208RcAgcGg11B.1.617.20.000004
S1208Q1208delCAG---11B.1.6210.000089
S1208Q1208ECagGag11B.1.621.10.000506
S1208Q1208HcaGcaT11B.3.10.001658
S1208Q1208HcaGcaT11B.390.002331
S1208Q1208HcaGcaT11B.400.000364
S1208Q1208KCagAag11B.610.005747
S1208Q1208delCAG---11C.170.055556
S1208Q1208XCagTag11C.20.016129
S1208Q1208delCAG---11C.370.000116
S1208Q1208delCAG---11P.10.000016
S1208Q1208QcaGcaA11P.10.000016
S1208Q1208HcaGcaT11Q.10.000126
S1208Q1208ECagGag11Q.80.000165
S1208Q1208delCAG---11U.30.003861