CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 12

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S12S12FnonsyntCttTt1265812658121596-21598
S12S12SsyntcTtcC6215810.93558821596-21598
S12S12SsyntcTtcA621240.038647321596-21598
S12S12SsyntcTtcG621160.025764921596-21598
S12S12CnonsyntCttGt352352121596-21598
S12S12PnonsynTctCct1421380.97183121596-21598
S12S12PnonsynTcTCcA14230.021126821596-21598
S12S12PnonsynTcTCcG14210.0070422521596-21598
S12S12YnonsyntCttAt130130121596-21598
S12S12deldelTCT---4848121596-21598
S12S12AnonsynTctGct2020121596-21598
S12S12TnonsynTctAct970.77777821596-21598
S12S12TnonsynTcTAcG920.22222221596-21598
S12S12del1delTct-ct420.521596-21598
S12S12del1deltCtt-t410.2521596-21598
S12S12del1deltcTtc-410.2521596-21598
S12S12NnonsynTCtAAt22121596-21598
S12S12KnonsynTCTAAG22121596-21598
S12S12XnonsyntCTtAG22121596-21598
S12S12del2delTCt--t22121596-21598

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S12S12FtCttTt1265812658All0.002421
S12S12FtCttTt25642564B.1.1.630.989198
S12S12FtCttTt19571957B.1.1.70.001752
S12S12FtCttTt16811681C.36.30.953488
S12S12FtCttTt818818AY.40.001273
S12S12StcTtcC581621All0.000111
S12S12StcTtcA24621All0.000005
S12S12StcTtcG16621All0.000003
S12S12FtCttTt603603P.10.0095
S12S12FtCttTt529529C.360.481785
S12S12StcTtcC413415B.1.1.70.00037
S12S12StcTtcG1415B.1.1.70.000001
S12S12StcTtcA1415B.1.1.70.000001
S12S12CtCttGt352352All0.000067
S12S12FtCttTt335335B.1.3110.091982
S12S12FtCttTt326326C.36.3.10.88587
S12S12FtCttTt319319B.10.002922
S12S12FtCttTt199199AY.440.001211
S12S12FtCttTt188188B.1.10.00341
S12S12CtCttGt186186B.1.1.70.000167
S12S12FtCttTt176176B.1.617.20.000663
S12S12FtCttTt166166B.1.4700.233146
S12S12FtCttTt153153AY.39.10.006061
S12S12FtCttTt146146AY.1140.033742
S12S12PTctCct138142All0.000026
S12S12PTcTCcA3142All0.000001
S12S12PTcTCcG1142All0
S12S12FtCttTt141141B.1.1600.004397
S12S12FtCttTt133133B.1.20.001171
S12S12YtCttAt130130All0.000025
S12S12FtCttTt115115B.1.4290.002706
S12S12FtCttTt111111AY.330.007412
S12S12FtCttTt9696B.1.2580.006389
S12S12PTctCct9394B.1.1.70.000083
S12S12PTcTCcG194B.1.1.70.000001
S12S12CtCttGt9292AY.40.000143
S12S12FtCttTt8787AY.430.000385
S12S12FtCttTt8484AY.200.003265
S12S12FtCttTt7575AY.250.000451
S12S12FtCttTt5858AY.1030.00036
S12S12FtCttTt5353B.1.5960.004618
S12S12FtCttTt4949B.1.1770.000645
S12S12FtCttTt4949B.1.177.150.030915
S12S12delTCT---4848All0.000009
S12S12FtCttTt4444AY.30.000438
S12S12FtCttTt4141AY.260.001161
S12S12YtCttAt4141B.1.1.70.000037
S12S12FtCttTt4141B.1.6370.002996
S12S12FtCttTt3939AY.740.00451
S12S12FtCttTt3636B.1.2430.002505
S12S12FtCttTt3333AY.116.10.010277
S12S12FtCttTt3232AY.50.000661
S12S12FtCttTt3030AY.99.20.002765
S12S12FtCttTt3030B.1.6030.319149
S12S12FtCttTt2929AY.7.10.003268
S12S12FtCttTt2929B.1.1.3540.127193
S12S12FtCttTt2727AY.46.60.00195
S12S12FtCttTt2727R.10.00243
S12S12StcTtcC2626AY.430.000115
S12S12FtCttTt2626B.1.3510.000773
S12S12FtCttTt2525B.1.177.40.005276
S12S12FtCttTt2525B.1.36.260.071429
S12S12FtCttTt2525P.1.110.255102
S12S12FtCttTt2222AY.230.001534
S12S12FtCttTt2121AY.4.20.000455
S12S12StcTtcC2021B.1.20.000176
S12S12StcTtcG121B.1.20.000009
S12S12ATctGct2020All0.000004
S12S12FtCttTt2020AY.390.000494
S12S12FtCttTt2020B.1.1.2840.002148
S12S12YtCttAt2020B.1.2580.001331
S12S12FtCttTt1919AY.290.0003
S12S12FtCttTt1919Q.70.021111
S12S12FtCttTt1717AY.1190.0006
S12S12FtCttTt1717B.1.1.280.005291
S12S12FtCttTt1717B.1.2400.003665
S12S12FtCttTt1616AY.1000.000736
S12S12FtCttTt1515AY.270.000971
S12S12StcTtcA1515B.1.1.3170.006175
S12S12FtCttTt1414AY.1020.000371
S12S12YtCttAt1414AY.40.000022
S12S12FtCttTt1414B.1.177.210.001071
S12S12FtCttTt1414B.1.4270.000707
S12S12StcTtcC713B.1.4270.000353
S12S12StcTtcG613B.1.4270.000303
S12S12FtCttTt1212B.1.1.5190.000477
S12S12StcTtcC1212B.1.177.690.017804
S12S12FtCttTt1111AY.90.000744
S12S12FtCttTt1111B.1.1.3110.00394
S12S12FtCttTt1111B.1.1.3330.011841
S12S12StcTtcC1010AY.1030.000062
S12S12FtCttTt1010AY.420.000402
S12S12FtCttTt1010B.1.1110.011751
S12S12FtCttTt1010B.1.5600.046296
S12S12FtCttTt1010C.170.555556
S12S12FtCttTt1010P.1.120.00484
S12S12TTctAct79All0.000001
S12S12TTcTAcG29All0
S12S12YtCttAt99AY.1030.000056
S12S12FtCttTt99AY.60.00037
S12S12FtCttTt99B.1.360.001313
S12S12StcTtcC88AD.20.001752
S12S12FtCttTt88AY.470.000249
S12S12FtCttTt88AY.610.000838
S12S12ATctGct88B.1.1.5190.000318
S12S12FtCttTt88B.1.2210.000568
S12S12StcTtcC78B.1.4290.000165
S12S12StcTtcA18B.1.4290.000024
S12S12FtCttTt88B.1.6280.002819
S12S12FtCttTt88P.30.012759
S12S12FtCttTt77AY.9.10.000586
S12S12FtCttTt77AY.980.000553
S12S12StcTtcC77AY.98.10.000339
S12S12FtCttTt77B.1.1.2680.104478
S12S12FtCttTt77B.1.177.730.003964
S12S12FtCttTt77C.370.000812
S12S12FtCttTt77D.20.000525
S12S12FtCttTt77P.20.001306
S12S12CtCttGt77Q.10.000884
S12S12FtCttTt66AY.1130.000854
S12S12delTCT---66AY.330.000401
S12S12FtCttTt66B.1.1.10.00196
S12S12FtCttTt66B.1.5250.000679
S12S12StcTtcC66B.1.617.20.000023
S12S12FtCttTt66C.390.113208
S12S12FtCttTt66P.1.10.001906
S12S12FtCttTt66Q.10.000758
S12S12CtCttGt55AY.1030.000031
S12S12CtCttGt55AY.1110.000916
S12S12FtCttTt55AY.1170.000423
S12S12FtCttTt55AY.120.00158
S12S12StcTtcC55AY.1200.000186
S12S12FtCttTt55AY.1210.000677
S12S12FtCttTt55AY.350.001165
S12S12PTctCct55AY.40.000008
S12S12PTctCct55AY.430.000022
S12S12StcTtcC55AY.440.00003
S12S12CtCttGt55AY.620.002179
S12S12FtCttTt55AY.9.20.000184
S12S12FtCttTt55B.1.1.2140.000277
S12S12FtCttTt55B.1.1.250.002843
S12S12FtCttTt55B.1.1.2940.006329
S12S12CtCttGt55B.1.1.3020.010373
S12S12FtCttTt55B.1.1280.003177
S12S12FtCttTt55B.1.160.160.004647
S12S12FtCttTt55B.1.177.160.003322
S12S12FtCttTt55B.1.177.810.000947
S12S12FtCttTt55B.1.5260.000118
S12S12CtCttGt55B.1.5770.003436
S12S12FtCttTt55B.1.617.10.000645
S12S12FtCttTt55B.1.6210.000443
S12S12FtCttTt55P.1.40.004883
S12S12FtCttTt55P.1.70.001596
S12S12TTctAct240.111111
S12S12StcTtcG240.111111
S12S12PTcTCcA240.111111
S12S12TTcTAcG240.111111
S12S12PTctCct240.111111
S12S12StcTtcA240.111111
S12S12del1Tct-ct24All0
S12S12del1tcTtc-14All0
S12S12del1tCtt-t14All0
S12S12PTctCct44AY.1030.000025
S12S12FtCttTt44AY.1200.000149
S12S12YtCttAt44AY.250.000024
S12S12FtCttTt44AY.4.2.10.000596
S12S12FtCttTt44AY.460.000416
S12S12CtCttGt44AY.60.000165
S12S12FtCttTt44AY.920.001149
S12S12FtCttTt44AY.98.10.000194
S12S12StcTtcC44B.10.000037
S12S12delTCT---44B.1.10.000073
S12S12FtCttTt44B.1.1.4620.034483
S12S12FtCttTt44B.1.1.560.071429
S12S12FtCttTt44B.1.1.830.01084
S12S12YtCttAt44B.1.20.000035
S12S12CtCttGt44B.1.20.000035
S12S12FtCttTt44B.1.36.290.002069
S12S12FtCttTt44B.1.3690.001141
S12S12FtCttTt44B.1.466.20.001565
S12S12FtCttTt44B.1.5640.001704
S12S12FtCttTt44B.1.6090.001918
S12S12CtCttGt44B.1.617.20.000015
S12S12CtCttGt44P.10.000063
S12S12FtCttTt44P.1.140.000191
S12S12FtCttTt44P.1.150.000929
S12S12FtCttTt44Q.80.00066
S12S12StcTtcC33AY.1020.00008
S12S12FtCttTt33AY.1040.005952
S12S12CtCttGt33AY.1190.000106
S12S12FtCttTt33AY.130.000483
S12S12FtCttTt33AY.4.40.001227
S12S12FtCttTt33AY.46.20.001906
S12S12FtCttTt33AY.570.001969
S12S12FtCttTt33AY.600.002814
S12S12StcTtcC33AY.7.20.001678
S12S12FtCttTt33AY.75.10.000541
S12S12FtCttTt33AY.910.002191
S12S12FtCttTt33AZ.20.002463
S12S12FtCttTt33B0.000383
S12S12YtCttAt33B.10.000027
S12S12delTCT---33B.10.000027
S12S12FtCttTt33B.1.1.2160.002671
S12S12FtCttTt33B.1.1.2220.000612
S12S12FtCttTt33B.1.1.2770.002276
S12S12FtCttTt33B.1.1.3060.001315
S12S12FtCttTt33B.1.1.4480.006098
S12S12FtCttTt33B.1.1.4860.004732
S12S12TTctAct33B.1.1.70.000003
S12S12StcTtcC33B.1.1770.00004
S12S12YtCttAt33B.1.177.750.003122
S12S12StcTtcC33B.1.177.890.073171
S12S12PTctCct33B.1.20.000026
S12S12FtCttTt33B.1.258.170.000312
S12S12StcTtcG33B.1.258.170.000312
S12S12FtCttTt33B.1.36.80.003
S12S12FtCttTt33B.1.4590.012245
S12S12StcTtcC33B.1.5170.001281
S12S12FtCttTt33B.1.5170.001281
S12S12FtCttTt33B.6.60.002667
S12S12delTCT---33P.10.000047
S12S12YtCttAt33P.10.000047
S12S12StcTtcC33P.1.140.000143
S12S12NTCtAAt220.111111
S12S12XtCTtAG220.111111
S12S12YtCttAt220.111111
S12S12KTCTAAG220.111111
S12S12FtCttTt22A0.000774
S12S12FtCttTt22AE.80.000978
S12S12del2TCt--t22All0
S12S12KTCTAAG22All0
S12S12XtCTtAG22All0
S12S12NTCtAAt22All0
S12S12FtCttTt22AY.1010.000981
S12S12ATctGct22AY.1030.000012
S12S12FtCttTt22AY.1060.00067
S12S12FtCttTt22AY.1070.000932
S12S12FtCttTt22AY.1080.002205
S12S12FtCttTt22AY.1180.000125
S12S12YtCttAt22AY.1210.000271
S12S12delTCT---22AY.250.000012
S12S12StcTtcC22AY.250.000012
S12S12ATctGct22AY.30.00002
S12S12FtCttTt22AY.3.10.000171
S12S12PTctCct22AY.3.10.000171
S12S12FtCttTt22AY.300.000791
S12S12ATctGct22AY.40.000003
S12S12StcTtcA12AY.40.000002
S12S12StcTtcC12AY.40.000002
S12S12FtCttTt22AY.4.30.001684
S12S12StcTtcC22AY.420.00008
S12S12delTCT---22AY.430.000009
S12S12CtCttGt22AY.430.000009
S12S12CtCttGt22AY.440.000012
S12S12delTCT---22AY.440.000012
S12S12FtCttTt22AY.450.000243
S12S12FtCttTt22AY.46.10.002053
S12S12YtCttAt22AY.50.000041
S12S12FtCttTt22AY.510.001818
S12S12FtCttTt22AY.540.000191
S12S12FtCttTt22AY.990.002099
S12S12PTctCct22B.10.000018
S12S12CtCttGt22B.1.10.000036
S12S12FtCttTt22B.1.1.1150.017857
S12S12StcTtcC22B.1.1.1700.002494
S12S12FtCttTt22B.1.1.1740.006757
S12S12FtCttTt22B.1.1.1760.000879
S12S12FtCttTt22B.1.1.1920.004619
S12S12FtCttTt22B.1.1.2530.005013
S12S12PTctCct22B.1.1.2860.005797
S12S12FtCttTt22B.1.1.3180.000604
S12S12FtCttTt22B.1.1.330.000842
S12S12FtCttTt22B.1.1.3720.001377
S12S12FtCttTt22B.1.1.3980.006452
S12S12FtCttTt22B.1.1.4180.045455
S12S12FtCttTt22B.1.1.4340.000697
S12S12FtCttTt22B.1.1.4870.011173
S12S12CtCttGt22B.1.1770.000026
S12S12CtCttGt22B.1.177.330.003289
S12S12FtCttTt22B.1.177.70.00033
S12S12YtCttAt22B.1.177.860.000367
S12S12FtCttTt22B.1.1890.008584
S12S12ATctGct22B.1.20.000018
S12S12FtCttTt22B.1.221.30.001667
S12S12FtCttTt22B.1.2340.000264
S12S12FtCttTt22B.1.2390.002442
S12S12FtCttTt22B.1.2410.001623
S12S12CtCttGt22B.1.2580.000133
S12S12FtCttTt22B.1.2650.002541
S12S12FtCttTt22B.1.3350.020619
S12S12FtCttTt22B.1.3560.003454
S12S12StcTtcC22B.1.36.10.002281
S12S12FtCttTt22B.1.36.10.002281
S12S12FtCttTt22B.1.36.220.002415
S12S12FtCttTt22B.1.36.310.003503
S12S12FtCttTt22B.1.3710.002245
S12S12FtCttTt22B.1.4280.002041
S12S12YtCttAt22B.1.4290.000047
S12S12PTctCct22B.1.4290.000047
S12S12FtCttTt22B.1.4990.002101
S12S12delTCT---22B.1.5250.000226
S12S12YtCttAt22B.1.5260.000047
S12S12FtCttTt22B.1.5760.001813
S12S12YtCttAt22B.1.5760.001813
S12S12FtCttTt22B.1.5770.001375
S12S12FtCttTt22B.1.5820.000981
S12S12FtCttTt22B.1.5950.000522
S12S12YtCttAt22B.1.617.20.000008
S12S12PTctCct22B.1.617.20.000008
S12S12FtCttTt22B.1.619.10.001283
S12S12FtCttTt22B.1.6200.001892
S12S12FtCttTt22B.1.810.042553
S12S12FtCttTt22C.110.021277
S12S12FtCttTt22C.160.002121
S12S12FtCttTt22N.50.003534
S12S12FtCttTt22P.1.160.000748
S12S12FtCttTt22P.1.170.000324
S12S12FtCttTt11A.20.000662
S12S12PTctCct11A.2.20.001689
S12S12PTctCct11A.2.40.003367
S12S12delTCT---11A.2.40.003367
S12S12FtCttTt11A.2.50.000499
S12S12FtCttTt11A.2.5.30.010309
S12S12FtCttTt11AH.30.003802
S12S12FtCttTt11AU.30.00211
S12S12FtCttTt11AY.10.000396
S12S12StcTtcC11AY.1000.000046
S12S12delTCT---11AY.1000.000046
S12S12delTCT---11AY.1010.00049
S12S12delTCT---11AY.1020.000027
S12S12delTCT---11AY.1030.000006
S12S12FtCttTt11AY.1100.000113
S12S12FtCttTt11AY.1110.000183
S12S12delTCT---11AY.116.10.000311
S12S12StcTtcC11AY.1170.000085
S12S12PTctCct11AY.1200.000037
S12S12FtCttTt11AY.190.00114
S12S12YtCttAt11AY.200.000039
S12S12TTctAct11AY.230.00007
S12S12StcTtcC11AY.230.00007
S12S12StcTtcA11AY.240.000431
S12S12StcTtcC11AY.260.000028
S12S12StcTtcC11AY.270.000065
S12S12PTctCct11AY.290.000016
S12S12ATctGct11AY.290.000016
S12S12FtCttTt11AY.29.10.000221
S12S12StcTtcC11AY.30.00001
S12S12PTctCct11AY.30.00001
S12S12StcTtcC11AY.3.10.000085
S12S12StcTtcC11AY.330.000067
S12S12FtCttTt11AY.340.000097
S12S12FtCttTt11AY.360.000148
S12S12FtCttTt11AY.370.000316
S12S12CtCttGt11AY.390.000025
S12S12StcTtcC11AY.39.10.00004
S12S12delTCT---11AY.40.000002
S12S12del1tCtt-t11AY.40.000002
S12S12CtCttGt11AY.4.20.000022
S12S12StcTtcC11AY.4.20.000022
S12S12del1Tct-ct11AY.4.30.000842
S12S12FtCttTt11AY.4.50.000107
S12S12FtCttTt11AY.410.000294
S12S12YtCttAt11AY.420.00004
S12S12delTCT---11AY.420.00004
S12S12PTcTCcA11AY.420.00004
S12S12PTctCct11AY.440.000006
S12S12YtCttAt11AY.440.000006
S12S12PTctCct11AY.46.10.001027
S12S12FtCttTt11AY.46.40.000165
S12S12FtCttTt11AY.46.50.000198
S12S12delTCT---11AY.470.000031
S12S12FtCttTt11AY.480.000465
S12S12StcTtcC11AY.490.003195
S12S12FtCttTt11AY.490.003195
S12S12StcTtcC11AY.50.000021
S12S12FtCttTt11AY.5.40.000277
S12S12PTctCct11AY.540.000095
S12S12CtCttGt11AY.540.000095
S12S12FtCttTt11AY.550.000917
S12S12StcTtcC11AY.670.000464
S12S12delTCT---11AY.680.000274
S12S12YtCttAt11AY.690.000187
S12S12FtCttTt11AY.70.000196
S12S12StcTtcC11AY.720.001361
S12S12CtCttGt11AY.740.000116
S12S12TTctAct11AY.75.10.00018
S12S12FtCttTt11AY.790.001211
S12S12StcTtcC11AY.790.001211
S12S12FtCttTt11AY.840.000437
S12S12FtCttTt11AY.850.000427
S12S12FtCttTt11AY.890.004902
S12S12StcTtcC11AY.90.000068
S12S12FtCttTt11AY.960.002075
S12S12delTCT---11AY.980.000079
S12S12YtCttAt11AY.98.10.000048
S12S12ATctGct11B.10.000009
S12S12PTctCct11B.1.10.000018
S12S12StcTtcA11B.1.10.000018
S12S12FtCttTt11B.1.1.100.001115
S12S12PTctCct11B.1.1.1570.000913
S12S12FtCttTt11B.1.1.2190.005
S12S12FtCttTt11B.1.1.2200.001859
S12S12FtCttTt11B.1.1.2360.006897
S12S12FtCttTt11B.1.1.2630.001558
S12S12FtCttTt11B.1.1.2730.006757
S12S12FtCttTt11B.1.1.2860.002899
S12S12FtCttTt11B.1.1.3010.001179
S12S12StcTtcC11B.1.1.3030.002762
S12S12FtCttTt11B.1.1.3050.003861
S12S12CtCttGt11B.1.1.3060.000438
S12S12FtCttTt11B.1.1.3090.005848
S12S12delTCT---11B.1.1.3150.008475
S12S12FtCttTt11B.1.1.3170.000412
S12S12FtCttTt11B.1.1.3510.002793
S12S12FtCttTt11B.1.1.3690.000446
S12S12FtCttTt11B.1.1.370.000193
S12S12FtCttTt11B.1.1.390.00051
S12S12FtCttTt11B.1.1.4130.006897
S12S12FtCttTt11B.1.1.4160.000905
S12S12FtCttTt11B.1.1.4320.001266
S12S12delTCT---11B.1.1.4330.001425
S12S12FtCttTt11B.1.1.460.004367
S12S12delTCT---11B.1.1.460.004367
S12S12FtCttTt11B.1.1.5070.008696
S12S12PTctCct11B.1.1.5190.00004
S12S12FtCttTt11B.1.1.5210.005348
S12S12delTCT---11B.1.1.70.000001
S12S12ATctGct11B.1.1.70.000001
S12S12FtCttTt11B.1.1.700.000341
S12S12FtCttTt11B.1.1180.006711
S12S12FtCttTt11B.1.1260.001276
S12S12PTctCct11B.1.1390.000733
S12S12FtCttTt11B.1.1470.000756
S12S12FtCttTt11B.1.1490.003425
S12S12FtCttTt11B.1.1570.002985
S12S12StcTtcC11B.1.1600.000031
S12S12YtCttAt11B.1.1600.000031
S12S12YtCttAt11B.1.160.140.002119
S12S12FtCttTt11B.1.160.170.001701
S12S12FtCttTt11B.1.160.90.007194
S12S12FtCttTt11B.1.1690.014925
S12S12PTctCct11B.1.1770.000013
S12S12YtCttAt11B.1.1770.000013
S12S12FtCttTt11B.1.177.120.000152
S12S12FtCttTt11B.1.177.280.007407
S12S12FtCttTt11B.1.177.310.011494
S12S12FtCttTt11B.1.177.440.000519
S12S12FtCttTt11B.1.177.530.002392
S12S12StcTtcC11B.1.177.540.000606
S12S12FtCttTt11B.1.177.570.000281
S12S12FtCttTt11B.1.177.60.000977
S12S12FtCttTt11B.1.177.600.000218
S12S12delTCT---11B.1.177.680.015152
S12S12FtCttTt11B.1.177.690.001484
S12S12FtCttTt11B.1.177.710.010101
S12S12StcTtcC11B.1.177.810.000189
S12S12del1Tct-ct11B.1.177.810.000189
S12S12delTCT---11B.1.177.830.001481
S12S12FtCttTt11B.1.177.870.000728
S12S12delTCT---11B.1.20.000009
S12S12del2TCt--t11B.1.20.000009
S12S12FtCttTt11B.1.2060.000816
S12S12FtCttTt11B.1.2320.000537
S12S12StcTtcG11B.1.2360.002053
S12S12StcTtcA11B.1.2430.00007
S12S12FtCttTt11B.1.2500.014493
S12S12StcTtcG11B.1.2580.000067
S12S12YtCttAt11B.1.258.100.011364
S12S12FtCttTt11B.1.258.40.003448
S12S12FtCttTt11B.1.258.50.008772
S12S12FtCttTt11B.1.2600.003344
S12S12FtCttTt11B.1.2640.012346
S12S12CtCttGt11B.1.2890.00266
S12S12FtCttTt11B.1.3150.006061
S12S12CtCttGt11B.1.3320.003497
S12S12StcTtcA11B.1.3490.000715
S12S12StcTtcC11B.1.3510.00003
S12S12CtCttGt11B.1.351.20.000303
S12S12PTctCct11B.1.360.000146
S12S12FtCttTt11B.1.36.170.000494
S12S12FtCttTt11B.1.36.250.002208
S12S12FtCttTt11B.1.3610.001289
S12S12FtCttTt11B.1.3750.00082
S12S12FtCttTt11B.1.3890.001002
S12S12FtCttTt11B.1.3960.000706
S12S12FtCttTt11B.1.3970.004854
S12S12FtCttTt11B.1.4000.000429
S12S12FtCttTt11B.1.400.10.015152
S12S12FtCttTt11B.1.4060.006061
S12S12FtCttTt11B.1.4080.00369
S12S12FtCttTt11B.1.415.10.007576
S12S12YtCttAt11B.1.4270.00005
S12S12delTCT---11B.1.4290.000024
S12S12FtCttTt11B.1.4330.003195
S12S12FtCttTt11B.1.438.10.000107
S12S12del2TCt--t11B.1.4530.003236
S12S12PTctCct11B.1.4530.003236
S12S12FtCttTt11B.1.466.10.007194
S12S12delTCT---11B.1.4700.001404
S12S12delTCT---11B.1.4860.111111
S12S12FtCttTt11B.1.5090.000866
S12S12FtCttTt11B.1.5380.008065
S12S12FtCttTt11B.1.5450.014493
S12S12FtCttTt11B.1.5510.00129
S12S12FtCttTt11B.1.5550.022222
S12S12FtCttTt11B.1.5670.003333
S12S12StcTtcG11B.1.5960.000087
S12S12FtCttTt11B.1.6060.006024
S12S12CtCttGt11B.1.617.10.000129
S12S12del1tcTtc-11B.1.617.20.000004
S12S12delTCT---11B.1.617.20.000004
S12S12delTCT---11B.1.6200.000946
S12S12FtCttTt11B.1.621.10.000506
S12S12YtCttAt11B.1.6270.00202
S12S12FtCttTt11B.1.6340.003425
S12S12FtCttTt11B.1.930.000934
S12S12FtCttTt11C.180.002591
S12S12delTCT---11C.36.30.000567
S12S12StcTtcC11P.10.000016
S12S12ATctGct11P.1.10.000318
S12S12FtCttTt11P.1.10.10.00813
S12S12PTctCct11P.1.140.000048
S12S12YtCttAt11P.1.150.000232
S12S12FtCttTt11P.1.20.001156
S12S12StcTtcC11P.20.000187
S12S12CtCttGt11P.30.001595
S12S12StcTtcC11Q.30.000145
S12S12CtCttGt11R.10.00009
S12S12YtCttAt11W.30.005263
S12S12FtCttTt11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.