CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1198

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1198I1198IsynatCatT195519030.97340225154-25156
S1198I1198IsynatCatA1955520.026598525154-25156
S1198I1198VnonsynAtcGtc156156125154-25156
S1198I1198deldelATC---123123125154-25156
S1198I1198SnonsynaTcaGc51500.98039225154-25156
S1198I1198SnonsynATCTCA5110.019607825154-25156
S1198I1198TnonsynaTcaCc26240.92307725154-25156
S1198I1198TnonsynaTCaCT2620.076923125154-25156
S1198I1198FnonsynAtcTtc1111125154-25156
S1198I1198LnonsynAtcCtc760.85714325154-25156
S1198I1198LnonsynAtCCtT710.14285725154-25156
S1198I1198del1delAtc-tc420.525154-25156
S1198I1198del1delatCat-410.2525154-25156
S1198I1198del1delaTca-c410.2525154-25156
S1198I1198NnonsynaTcaAc33125154-25156
S1198I1198PnonsynATCCCT210.525154-25156
S1198I1198PnonsynATcCCc210.525154-25156

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1198I1198IatCatT19031955All0.000364
S1198I1198IatCatA521955All0.00001
S1198I1198IatCatT413413B.1.20.003637
S1198I1198IatCatT246246B.1.617.20.000926
S1198I1198IatCatT169202B.1.1.70.000151
S1198I1198IatCatA33202B.1.1.70.00003
S1198I1198VAtcGtc156156All0.00003
S1198I1198IatCatT137138AY.250.000824
S1198I1198IatCatA1138AY.250.000006
S1198I1198delATC---123123All0.000024
S1198I1198IatCatT113113AY.39.10.004476
S1198I1198IatCatT102102AY.430.000452
S1198I1198IatCatT6975AY.40.000107
S1198I1198IatCatA675AY.40.000009
S1198I1198VAtcGtc5858AY.440.000353
S1198I1198SaTcaGc5051All0.00001
S1198I1198SATCTCA151All0
S1198I1198IatCatT5050B.1.2210.003552
S1198I1198delATC---4747B.1.1.70.000042
S1198I1198IatCatT3940AY.1030.000242
S1198I1198IatCatA140AY.1030.000006
S1198I1198IatCatT3434AY.440.000207
S1198I1198VAtcGtc3131AY.40.000048
S1198I1198IatCatT2327B.10.000211
S1198I1198IatCatA427B.10.000037
S1198I1198TaTcaCc2426All0.000005
S1198I1198TaTCaCT226All0
S1198I1198IatCatT2425AY.1020.000636
S1198I1198IatCatA125AY.1020.000027
S1198I1198IatCatT2323M.10.534884
S1198I1198IatCatT2222AY.30.000219
S1198I1198IatCatT2222B.1.1770.00029
S1198I1198SaTcaGc2121AY.40.000033
S1198I1198IatCatT2021B.1.5960.001743
S1198I1198IatCatA121B.1.5960.000087
S1198I1198IatCatT1919B.1.5260.000447
S1198I1198IatCatT1718B.1.3510.000505
S1198I1198IatCatA118B.1.3510.00003
S1198I1198IatCatT1818B.1.4290.000424
S1198I1198IatCatT1717AY.260.000481
S1198I1198IatCatT1717AY.390.00042
S1198I1198IatCatT1616B.1.1600.000499
S1198I1198SaTcaGc1414AY.4.50.001505
S1198I1198IatCatT1414P.10.000221
S1198I1198IatCatT1313AY.1180.000814
S1198I1198IatCatT1313AY.50.000268
S1198I1198FAtcTtc1111All0.000002
S1198I1198IatCatT1010AY.1000.00046
S1198I1198VAtcGtc1010B.1.1.70.000009
S1198I1198IatCatT99AY.1100.001014
S1198I1198IatCatT99B.1.10.000163
S1198I1198IatCatT99B.1.1.2690.012179
S1198I1198delATC---88B.1.1770.000105
S1198I1198LAtcCtc67All0.000001
S1198I1198LAtCCtT17All0
S1198I1198IatCatT77AY.1170.000592
S1198I1198IatCatT77AY.1200.00026
S1198I1198IatCatT77AY.270.000453
S1198I1198IatCatT77AY.420.000282
S1198I1198IatCatT77AY.460.000729
S1198I1198IatCatT77B.1.1.2220.001428
S1198I1198IatCatT77B.1.5680.007778
S1198I1198IatCatT77B.1.5950.001827
S1198I1198delATC---66AY.1200.000223
S1198I1198delATC---66AY.40.000009
S1198I1198delATC---66AY.4.50.000645
S1198I1198IatCatT66B.1.2430.000418
S1198I1198IatCatT66R.10.00054
S1198I1198IatCatT55AY.200.000194
S1198I1198VAtcGtc55AY.39.10.000198
S1198I1198IatCatT55B.1.1.280.001556
S1198I1198IatCatT55B.1.1.5190.000199
S1198I1198TaTcaCc55B.1.1.70.000004
S1198I1198IatCatT55B.1.177.460.004591
S1198I1198VAtcGtc55B.1.4290.000118
S1198I1198IatCatT55N.90.029762
S1198I1198del1Atc-tc24All0
S1198I1198del1atCat-14All0
S1198I1198del1aTca-c14All0
S1198I1198IatCatT44AY.1190.000141
S1198I1198VAtcGtc44AY.250.000024
S1198I1198SaTcaGc44AY.90.00027
S1198I1198IatCatT44B.1.1.4340.001394
S1198I1198VAtcGtc44B.1.617.20.000015
S1198I1198IatCatT44B.1.6210.000354
S1198I1198IatCatT44P.1.140.000191
S1198I1198VAtcGtc44P.1.140.000191
S1198I1198NaTcaAc33All0.000001
S1198I1198IatCatT33AY.230.000209
S1198I1198IatCatT33AY.290.000047
S1198I1198TaTcaCc33AY.30.00003
S1198I1198VAtcGtc33AY.430.000013
S1198I1198IatCatT33AY.450.000365
S1198I1198IatCatT33AY.46.60.000217
S1198I1198IatCatT33AY.480.001395
S1198I1198IatCatT33AY.60.000123
S1198I1198SaTcaGc33AY.80.001818
S1198I1198IatCatT33AY.880.002653
S1198I1198delATC---33B.1.10.000054
S1198I1198IatCatT33B.1.1.2140.000166
S1198I1198delATC---33B.1.177.40.000633
S1198I1198IatCatT33B.1.258.170.000312
S1198I1198IatCatT33B.1.36.290.001552
S1198I1198IatCatT33B.1.4000.001287
S1198I1198IatCatA23B.1.4270.000101
S1198I1198IatCatT13B.1.4270.00005
S1198I1198delATC---33B.1.617.20.000011
S1198I1198IatCatT33C.300.005181
S1198I1198delATC---33P.1.150.000697
S1198I1198IatCatT33P.20.00056
S1198I1198LAtcCtc120.055556
S1198I1198PATCCCT120.055556
S1198I1198PATcCCc120.055556
S1198I1198LAtCCtT120.055556
S1198I1198TaTCaCT120.055556
S1198I1198TaTcaCc120.055556
S1198I1198PATcCCc12All0
S1198I1198PATCCCT12All0
S1198I1198VAtcGtc22AY.1030.000012
S1198I1198IatCatT22AY.120.000632
S1198I1198IatCatT22AY.140.000176
S1198I1198IatCatT22AY.240.000862
S1198I1198VAtcGtc22AY.30.00002
S1198I1198FAtcTtc22AY.40.000003
S1198I1198delATC---22AY.430.000009
S1198I1198TaTcaCc22AY.440.000012
S1198I1198LAtcCtc22AY.440.000012
S1198I1198FAtcTtc22AY.440.000012
S1198I1198IatCatT22AY.46.40.000329
S1198I1198delATC---22AY.50.000041
S1198I1198IatCatT22AY.590.001059
S1198I1198IatCatT22AY.750.000112
S1198I1198VAtcGtc22AY.9.10.000167
S1198I1198IatCatT22AY.920.000575
S1198I1198TaTcaCc22B.10.000018
S1198I1198delATC---22B.10.000018
S1198I1198IatCatT22B.1.1.1130.013986
S1198I1198IatCatT22B.1.1.2410.004141
S1198I1198IatCatT22B.1.1.3110.000716
S1198I1198VAtcGtc22B.1.1.3330.002153
S1198I1198del1Atc-tc22B.1.1.70.000002
S1198I1198SaTcaGc22B.1.1.70.000002
S1198I1198FAtcTtc22B.1.1770.000026
S1198I1198delATC---22B.1.177.210.000153
S1198I1198IatCatT22B.1.177.210.000153
S1198I1198VAtcGtc22B.1.177.40.000422
S1198I1198delATC---22B.1.177.540.001213
S1198I1198IatCatT22B.1.1890.008584
S1198I1198VAtcGtc22B.1.20.000018
S1198I1198IatCatT22B.1.3260.015152
S1198I1198IatCatT22B.1.360.000292
S1198I1198TaTcaCc22B.1.4290.000047
S1198I1198VAtcGtc22B.1.617.10.000258
S1198I1198IatCatT22C.36.30.001134
S1198I1198delATC---22P.10.000032
S1198I1198IatCatT110.055556
S1198I1198IatCatT11A.23.10.000704
S1198I1198delATC---11AD.20.000219
S1198I1198VAtcGtc11AE.80.000489
S1198I1198LAtcCtc11AY.1030.000006
S1198I1198delATC---11AY.1110.000183
S1198I1198IatCatT11AY.1160.000287
S1198I1198VAtcGtc11AY.1180.000063
S1198I1198delATC---11AY.1180.000063
S1198I1198NaTcaAc11AY.1200.000037
S1198I1198SaTcaGc11AY.140.000088
S1198I1198IatCatT11AY.160.00038
S1198I1198IatCatT11AY.20.000356
S1198I1198VAtcGtc11AY.200.000039
S1198I1198delATC---11AY.230.00007
S1198I1198delATC---11AY.240.000431
S1198I1198delATC---11AY.250.000006
S1198I1198IatCatT11AY.340.000097
S1198I1198VAtcGtc11AY.390.000025
S1198I1198TaTcaCc11AY.40.000002
S1198I1198NaTcaAc11AY.40.000002
S1198I1198VAtcGtc11AY.4.20.000022
S1198I1198IatCatT11AY.4.20.000022
S1198I1198VAtcGtc11AY.400.000964
S1198I1198TaTcaCc11AY.420.00004
S1198I1198SaTcaGc11AY.430.000004
S1198I1198SATCTCA11AY.440.000006
S1198I1198VAtcGtc11AY.450.000122
S1198I1198FAtcTtc11AY.46.20.000635
S1198I1198VAtcGtc11AY.46.60.000072
S1198I1198IatCatT11AY.5.40.000277
S1198I1198IatCatT11AY.510.000909
S1198I1198IatCatA11AY.550.000917
S1198I1198SaTcaGc11AY.580.000907
S1198I1198delATC---11AY.60.000041
S1198I1198IatCatT11AY.650.000533
S1198I1198delATC---11AY.680.000274
S1198I1198IatCatT11AY.740.000116
S1198I1198IatCatT11AY.800.001129
S1198I1198delATC---11AY.810.001992
S1198I1198SaTcaGc11AY.870.000833
S1198I1198VAtcGtc11AY.90.000068
S1198I1198delATC---11AY.90.000068
S1198I1198FAtcTtc11AY.9.10.000084
S1198I1198TaTCaCT11AY.9.20.000037
S1198I1198VAtcGtc11AY.940.000443
S1198I1198IatCatT11AY.980.000079
S1198I1198TaTcaCc11AY.98.10.000048
S1198I1198IatCatT11AY.98.10.000048
S1198I1198VAtcGtc11AY.990.001049
S1198I1198IatCatT11AY.99.20.000092
S1198I1198IatCatT11B0.000128
S1198I1198VAtcGtc11B.10.000009
S1198I1198del1atCat-11B.10.000009
S1198I1198delATC---11B.1.1.1390.022727
S1198I1198delATC---11B.1.1.1590.004673
S1198I1198IatCatT11B.1.1.2160.00089
S1198I1198delATC---11B.1.1.2360.006897
S1198I1198IatCatT11B.1.1.2940.001266
S1198I1198IatCatT11B.1.1.3060.000438
S1198I1198IatCatT11B.1.1.3180.000302
S1198I1198IatCatT11B.1.1.4200.001006
S1198I1198TaTcaCc11B.1.1.5190.00004
S1198I1198NaTcaAc11B.1.1.70.000001
S1198I1198LAtcCtc11B.1.1.70.000001
S1198I1198delATC---11B.1.160.230.004831
S1198I1198TaTcaCc11B.1.1770.000013
S1198I1198LAtcCtc11B.1.1770.000013
S1198I1198delATC---11B.1.177.170.000821
S1198I1198IatCatT11B.1.177.380.010417
S1198I1198delATC---11B.1.177.70.000165
S1198I1198IatCatT11B.1.177.730.000566
S1198I1198del1aTca-c11B.1.20.000009
S1198I1198FAtcTtc11B.1.20.000009
S1198I1198TaTcaCc11B.1.20.000009
S1198I1198delATC---11B.1.2180.005155
S1198I1198delATC---11B.1.221.10.002907
S1198I1198IatCatT11B.1.230.006061
S1198I1198VAtcGtc11B.1.2340.000132
S1198I1198delATC---11B.1.2580.000067
S1198I1198TaTcaCc11B.1.2580.000067
S1198I1198IatCatT11B.1.2580.000067
S1198I1198FAtcTtc11B.1.258.110.000396
S1198I1198IatCatT11B.1.3060.005714
S1198I1198VAtcGtc11B.1.3510.00003
S1198I1198delATC---11B.1.36.170.000494
S1198I1198IatCatT11B.1.36.380.001642
S1198I1198delATC---11B.1.4090.000781
S1198I1198IatCatT11B.1.438.10.000107
S1198I1198IatCatT11B.1.4930.025641
S1198I1198IatCatT11B.1.5250.000113
S1198I1198VAtcGtc11B.1.5750.000303
S1198I1198TaTcaCc11B.1.5770.000687
S1198I1198delATC---11B.1.5960.000087
S1198I1198SaTcaGc11B.1.5990.00365
S1198I1198IatCatT11B.1.6070.052632
S1198I1198IatCatT11B.1.6120.002653
S1198I1198IatCatA11B.1.617.10.000129
S1198I1198FAtcTtc11B.1.617.20.000004
S1198I1198IatCatT11B.1.6200.000946
S1198I1198VAtcGtc11B.1.6200.000946
S1198I1198delATC---11B.1.6210.000089
S1198I1198IatCatT11B.230.002924
S1198I1198VAtcGtc11B.460.020833
S1198I1198delATC---11C.170.055556
S1198I1198IatCatT11C.350.000774
S1198I1198TaTcaCc11C.350.000774
S1198I1198delATC---11C.370.000116
S1198I1198VAtcGtc11C.370.000116
S1198I1198IatCatT11P.1.120.000484
S1198I1198SaTcaGc11P.1.150.000232
S1198I1198IatCatT11Q.80.000165
S1198I1198delATC---11U.30.003861