CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1181

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1181K1181KsynaaAaaG16711671125103-25105
S1181K1181NnonsynaaAaaT3432210.64431525103-25105
S1181K1181NnonsynaaAaaC3431220.35568525103-25105
S1181K1181RnonsynaAaaGa2322310.9956925103-25105
S1181K1181RnonsynaAAaGG23210.0043103425103-25105
S1181K1181QnonsynAaaCaa2022010.99504925103-25105
S1181K1181QnonsynAaACaG20210.0049504925103-25105
S1181K1181InonsynaAaaTa1701690.99411825103-25105
S1181K1181InonsynaAAaTC17010.0058823525103-25105
S1181K1181EnonsynAaaGaa1571560.99363125103-25105
S1181K1181EnonsynAaAGaG15710.0063694325103-25105
S1181K1181deldelAAA---139139125103-25105
S1181K1181TnonsynaAaaCa1251240.99225103-25105
S1181K1181TnonsynaAAaCG12510.00825103-25105
S1181K1181SnonsynAAATCG420.525103-25105
S1181K1181SnonsynAAATCT410.2525103-25105
S1181K1181SnonsynAAaTCa410.2525103-25105
S1181K1181del1delaaAaa-22125103-25105
S1181K1181XnonsynAaATaG210.525103-25105
S1181K1181XnonsynAaaTaa210.525103-25105
S1181K1181AnonsynAAAGCG210.525103-25105
S1181K1181AnonsynAAaGCa210.525103-25105
S1181K1181MnonsynaAAaTG11125103-25105
S1181K1181DnonsynAaAGaT11125103-25105

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1181K1181KaaAaaG16711671All0.00032
S1181K1181KaaAaaG12551255B.1.5770.862543
S1181K1181NaaAaaT221343All0.000042
S1181K1181NaaAaaC122343All0.000023
S1181K1181RaAaaGa231232All0.000044
S1181K1181RaAAaGG1232All0
S1181K1181QAaaCaa201202All0.000038
S1181K1181QAaACaG1202All0
S1181K1181IaAaaTa169170All0.000032
S1181K1181IaAAaTC1170All0
S1181K1181EAaaGaa156157All0.00003
S1181K1181EAaAGaG1157All0
S1181K1181delAAA---139139All0.000027
S1181K1181IaAaaTa136136AY.40.000212
S1181K1181TaAaaCa124125All0.000024
S1181K1181TaAAaCG1125All0
S1181K1181QAaaCaa117117AY.40.000182
S1181K1181NaaAaaT114114AY.540.01087
S1181K1181KaaAaaG100100AY.40.000156
S1181K1181RaAaaGa9393AY.40.000145
S1181K1181NaaAaaC6270AY.1030.000385
S1181K1181NaaAaaT870AY.1030.00005
S1181K1181KaaAaaG6565B.1.10.001179
S1181K1181KaaAaaG5757B.10.000522
S1181K1181delAAA---5151B.1.1.70.000046
S1181K1181EAaaGaa4747B.1.617.20.000177
S1181K1181KaaAaaG4646B.1.5950.012004
S1181K1181TaAaaCa4545B.1.617.20.000169
S1181K1181TaAaaCa3737AY.1000.001702
S1181K1181RaAaaGa3131B.1.1.70.000028
S1181K1181KaaAaaG2929B.1.20.000255
S1181K1181RaAaaGa2525B.1.5760.022665
S1181K1181QAaaCaa2323B.1.6210.002036
S1181K1181NaaAaaC2222B.1.1.4340.007668
S1181K1181NaaAaaC1322B.1.1.70.000012
S1181K1181NaaAaaT922B.1.1.70.000008
S1181K1181NaaAaaT2020AY.4.20.000434
S1181K1181KaaAaaG2020AY.430.000089
S1181K1181QAaaCaa2020P.1.140.000956
S1181K1181EAaaGaa1818AY.1190.000636
S1181K1181EAaaGaa1818B.1.1.70.000016
S1181K1181EAaaGaa1717B.1.1600.00053
S1181K1181TaAaaCa1616B.1.1.3160.014801
S1181K1181NaaAaaT1516B.1.617.20.000056
S1181K1181NaaAaaC116B.1.617.20.000004
S1181K1181QAaaCaa1414B.1.20.000123
S1181K1181EAaaGaa1414B.1.2390.017094
S1181K1181KaaAaaG1111B.1.1.70.00001
S1181K1181KaaAaaG1010AY.470.000311
S1181K1181RaAaaGa1010B.10.000092
S1181K1181KaaAaaG1010B.1.617.20.000038
S1181K1181RaAaaGa1010B.1.6370.000731
S1181K1181KaaAaaG99AY.250.000054
S1181K1181delAAA---88B.1.1770.000105
S1181K1181NaaAaaC88B.1.351.20.002421
S1181K1181delAAA---77AY.1200.00026
S1181K1181EAaaGaa77AY.40.000011
S1181K1181IaAaaTa77B.1.1.70.000006
S1181K1181RaAaaGa77C.370.000812
S1181K1181NaaAaaT66AY.1200.000223
S1181K1181delAAA---66AY.250.000036
S1181K1181delAAA---66AY.4.50.000645
S1181K1181RaAaaGa56B.1.1770.000066
S1181K1181RaAAaGG16B.1.1770.000013
S1181K1181KaaAaaG66B.1.2840.078947
S1181K1181TaAaaCa66B.1.3510.000178
S1181K1181KaaAaaG66P.10.000095
S1181K1181TaAaaCa55AY.40.000008
S1181K1181delAAA---55AY.40.000008
S1181K1181NaaAaaT55AY.440.00003
S1181K1181QAaaCaa55B.1.1770.000066
S1181K1181RaAaaGa55B.1.20.000044
S1181K1181EAaaGaa55B.1.20.000044
S1181K1181RaAaaGa55B.1.4270.000252
S1181K1181KaaAaaG55B.1.5960.000436
S1181K1181SAAATCG24All0
S1181K1181SAAaTCa14All0
S1181K1181SAAATCT14All0
S1181K1181EAaaGaa44AY.1030.000025
S1181K1181RaAaaGa44AY.260.000113
S1181K1181IaAaaTa44AY.30.00004
S1181K1181NaaAaaC34AY.330.0002
S1181K1181NaaAaaT14AY.330.000067
S1181K1181delAAA---44AY.430.000018
S1181K1181IaAaaTa44AY.440.000024
S1181K1181KaaAaaG44AY.440.000024
S1181K1181NaaAaaT44AY.520.003257
S1181K1181KaaAaaG44AY.530.00115
S1181K1181delAAA---44B.10.000037
S1181K1181QAaaCaa44B.1.1.70.000004
S1181K1181KaaAaaG44B.1.1770.000053
S1181K1181delAAA---44B.1.617.20.000015
S1181K1181RaAaaGa33AY.3.10.000256
S1181K1181NaaAaaT33AY.430.000013
S1181K1181RaAaaGa33AY.430.000013
S1181K1181TaAaaCa33AY.430.000013
S1181K1181EAaaGaa33AY.430.000013
S1181K1181QAaaCaa33AY.440.000018
S1181K1181NaaAaaT33AY.90.000203
S1181K1181EAaaGaa33B.10.000027
S1181K1181delAAA---33B.1.10.000054
S1181K1181IaAaaTa33B.1.10.000054
S1181K1181EAaaGaa33B.1.177.210.000229
S1181K1181delAAA---33B.1.177.40.000633
S1181K1181RaAaaGa33B.1.177.850.016304
S1181K1181RaAaaGa33B.1.617.20.000011
S1181K1181IaAaaTa33B.1.617.20.000011
S1181K1181QAaaCaa33B.1.617.20.000011
S1181K1181NaaAaaT33B.1.6370.000219
S1181K1181delAAA---33P.1.150.000697
S1181K1181TaAAaCG120.055556
S1181K1181XAaATaG120.055556
S1181K1181AAAaGCa120.055556
S1181K1181AAAAGCG120.055556
S1181K1181XAaaTaa120.055556
S1181K1181SAAaTCa120.055556
S1181K1181EAaAGaG120.055556
S1181K1181EAaaGaa120.055556
S1181K1181TaAaaCa120.055556
S1181K1181SAAATCG120.055556
S1181K1181del1aaAaa-22All0
S1181K1181XAaATaG12All0
S1181K1181XAaaTaa12All0
S1181K1181AAAAGCG12All0
S1181K1181AAAaGCa12All0
S1181K1181NaaAaaT22AY.1000.000092
S1181K1181IaAaaTa22AY.1000.000092
S1181K1181delAAA---22AY.230.000139
S1181K1181NaaAaaT22AY.250.000012
S1181K1181KaaAaaG22AY.30.00002
S1181K1181NaaAaaT22AY.390.000049
S1181K1181IaAaaTa22AY.430.000009
S1181K1181NaaAaaT22AY.460.000208
S1181K1181RaAaaGa22AY.46.40.000329
S1181K1181delAAA---22AY.50.000041
S1181K1181NaaAaaT22AY.620.000871
S1181K1181KaaAaaG22AY.75.10.000361
S1181K1181NaaAaaT22AY.810.003984
S1181K1181TaAaaCa22AY.9.20.000073
S1181K1181KaaAaaG22B.1.1.5190.000079
S1181K1181NaaAaaT22B.1.1.5260.007092
S1181K1181RaAaaGa22B.1.177.150.001262
S1181K1181IaAaaTa22B.1.177.600.000437
S1181K1181NaaAaaT12B.1.20.000009
S1181K1181NaaAaaC12B.1.20.000009
S1181K1181EAaaGaa22B.1.2340.000264
S1181K1181KaaAaaG22B.1.4290.000047
S1181K1181RaAaaGa22B.1.5260.000047
S1181K1181QAaaCaa22B.1.5950.000522
S1181K1181delAAA---22P.10.000032
S1181K1181NaaAaaC12P.10.000016
S1181K1181NaaAaaT12P.10.000016
S1181K1181KaaAaaG110.055556
S1181K1181delAAA---11A0.000387
S1181K1181delAAA---11AD.20.000219
S1181K1181NaaAaaT11AE.30.032258
S1181K1181MaAAaTG11All0
S1181K1181DAaAGaT11All0
S1181K1181RaAaaGa11AY.1000.000046
S1181K1181MaAAaTG11AY.1020.000027
S1181K1181QAaaCaa11AY.1030.000006
S1181K1181EAaaGaa11AY.1100.000113
S1181K1181NaaAaaC11AY.1110.000183
S1181K1181delAAA---11AY.1110.000183
S1181K1181IaAaaTa11AY.1130.000142
S1181K1181RaAaaGa11AY.1180.000063
S1181K1181KaaAaaG11AY.1200.000037
S1181K1181delAAA---11AY.190.00114
S1181K1181RaAaaGa11AY.200.000039
S1181K1181IaAaaTa11AY.230.00007
S1181K1181NaaAaaC11AY.230.00007
S1181K1181QAaaCaa11AY.240.000431
S1181K1181delAAA---11AY.240.000431
S1181K1181EAaaGaa11AY.250.000006
S1181K1181QAaaCaa11AY.250.000006
S1181K1181NaaAaaT11AY.260.000028
S1181K1181EAaaGaa11AY.260.000028
S1181K1181NaaAaaC11AY.290.000016
S1181K1181NaaAaaC11AY.30.00001
S1181K1181SAAATCT11AY.300.000396
S1181K1181delAAA---11AY.350.000233
S1181K1181EAaaGaa11AY.390.000025
S1181K1181NaaAaaT11AY.40.000002
S1181K1181RaAaaGa11AY.4.20.000022
S1181K1181RaAaaGa11AY.4.2.10.000149
S1181K1181NaaAaaT11AY.4.50.000107
S1181K1181RaAaaGa11AY.420.00004
S1181K1181KaaAaaG11AY.420.00004
S1181K1181QAaaCaa11AY.420.00004
S1181K1181EAaaGaa11AY.440.000006
S1181K1181RaAaaGa11AY.440.000006
S1181K1181NaaAaaT11AY.46.10.001027
S1181K1181KaaAaaG11AY.46.20.000635
S1181K1181KaaAaaG11AY.50.000021
S1181K1181TaAaaCa11AY.50.000021
S1181K1181TaAaaCa11AY.5.30.000337
S1181K1181NaaAaaT11AY.5.40.000277
S1181K1181TaAaaCa11AY.540.000095
S1181K1181delAAA---11AY.60.000041
S1181K1181NaaAaaT11AY.60.000041
S1181K1181IaAaaTa11AY.60.000041
S1181K1181RaAaaGa11AY.610.000105
S1181K1181QAaaCaa11AY.610.000105
S1181K1181delAAA---11AY.680.000274
S1181K1181delAAA---11AY.75.10.00018
S1181K1181IaAaaTa11AY.800.001129
S1181K1181delAAA---11AY.810.001992
S1181K1181KaaAaaG11AY.850.000427
S1181K1181SAAATCG11AY.850.000427
S1181K1181KaaAaaG11AY.880.000884
S1181K1181delAAA---11AY.90.000068
S1181K1181RaAaaGa11AY.9.20.000037
S1181K1181TaAaaCa11AZ.10.000867
S1181K1181RaAaaGa11AZ.20.000821
S1181K1181KaaAaaG11B0.000128
S1181K1181TaAaaCa11B.10.000009
S1181K1181QAaACaG11B.10.000009
S1181K1181QAaaCaa11B.1.10.000018
S1181K1181RaAaaGa11B.1.10.000018
S1181K1181NaaAaaT11B.1.10.000018
S1181K1181delAAA---11B.1.1.1130.006993
S1181K1181delAAA---11B.1.1.1390.022727
S1181K1181delAAA---11B.1.1.1590.004673
S1181K1181delAAA---11B.1.1.2360.006897
S1181K1181KaaAaaG11B.1.1.2610.008621
S1181K1181NaaAaaT11B.1.1.3260.001761
S1181K1181EAaaGaa11B.1.1.390.00051
S1181K1181KaaAaaG11B.1.1.4130.006897
S1181K1181EAaaGaa11B.1.1.4320.001266
S1181K1181RaAaaGa11B.1.1.4480.002033
S1181K1181QAaaCaa11B.1.1.5190.00004
S1181K1181NaaAaaC11B.1.1.5230.001563
S1181K1181NaaAaaT11B.1.1.570.011494
S1181K1181NaaAaaC11B.1.1.630.000386
S1181K1181TaAaaCa11B.1.1.70.000001
S1181K1181DAaAGaT11B.1.1.70.000001
S1181K1181EAaaGaa11B.1.1.700.000341
S1181K1181delAAA---11B.1.160.230.004831
S1181K1181IaAaaTa11B.1.1770.000013
S1181K1181del1aaAaa-11B.1.1770.000013
S1181K1181delAAA---11B.1.177.170.000821
S1181K1181delAAA---11B.1.177.210.000076
S1181K1181NaaAaaT11B.1.177.40.000211
S1181K1181del1aaAaa-11B.1.177.420.000894
S1181K1181KaaAaaG11B.1.177.440.000519
S1181K1181KaaAaaG11B.1.177.530.002392
S1181K1181delAAA---11B.1.177.540.000606
S1181K1181QAaaCaa11B.1.177.730.000566
S1181K1181delAAA---11B.1.177.830.001481
S1181K1181TaAaaCa11B.1.177.90.001332
S1181K1181delAAA---11B.1.2180.005155
S1181K1181delAAA---11B.1.221.10.002907
S1181K1181KaaAaaG11B.1.2580.000067
S1181K1181TaAaaCa11B.1.2580.000067
S1181K1181NaaAaaC11B.1.258.170.000104
S1181K1181EAaaGaa11B.1.258.170.000104
S1181K1181IaAaaTa11B.1.258.210.007752
S1181K1181RaAaaGa11B.1.3490.000715
S1181K1181KaaAaaG11B.1.3510.00003
S1181K1181EAaaGaa11B.1.360.000146
S1181K1181RaAaaGa11B.1.36.220.001208
S1181K1181KaaAaaG11B.1.36.80.001
S1181K1181QAaaCaa11B.1.3890.001002
S1181K1181RaAaaGa11B.1.4290.000024
S1181K1181EAaaGaa11B.1.4290.000024
S1181K1181NaaAaaT11B.1.5260.000024
S1181K1181KaaAaaG11B.1.5670.003333
S1181K1181QAaaCaa11B.1.5750.000303
S1181K1181KaaAaaG11B.1.5760.000907
S1181K1181KaaAaaG11B.1.5820.000491
S1181K1181RaAaaGa11B.1.5820.000491
S1181K1181RaAaaGa11B.1.5960.000087
S1181K1181delAAA---11B.1.5960.000087
S1181K1181KaaAaaG11B.1.6090.000479
S1181K1181EAaaGaa11B.1.6090.000479
S1181K1181NaaAaaC11B.1.6090.000479
S1181K1181NaaAaaC11B.1.6210.000089
S1181K1181delAAA---11B.1.6210.000089
S1181K1181IaAAaTC11B.1.6210.000089
S1181K1181KaaAaaG11B.1.6210.000089
S1181K1181delAAA---11C.170.055556
S1181K1181EAaaGaa11C.36.30.000567
S1181K1181delAAA---11C.370.000116
S1181K1181KaaAaaG11C.370.000116
S1181K1181NaaAaaC11C.370.000116
S1181K1181KaaAaaG11D.20.000075
S1181K1181EAaaGaa11P.10.000016
S1181K1181delAAA---11P.1.10.000318
S1181K1181NaaAaaT11P.1.150.000232
S1181K1181NaaAaaC11P.1.160.000374
S1181K1181RaAaaGa11P.1.70.000319
S1181K1181TaAaaCa11P.1.70.000319
S1181K1181NaaAaaT11Q.10.000126
S1181K1181delAAA---11Q.20.000613
S1181K1181delAAA---11U.30.003861