CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1181 | K1181K | syn | aaA | aaG | 1671 | 1671 | 1 | 25103-25105 | |
S | 1181 | K1181N | nonsyn | aaA | aaT | 343 | 221 | 0.644315 | 25103-25105 | |
S | 1181 | K1181N | nonsyn | aaA | aaC | 343 | 122 | 0.355685 | 25103-25105 | |
S | 1181 | K1181R | nonsyn | aAa | aGa | 232 | 231 | 0.99569 | 25103-25105 | |
S | 1181 | K1181R | nonsyn | aAA | aGG | 232 | 1 | 0.00431034 | 25103-25105 | |
S | 1181 | K1181Q | nonsyn | Aaa | Caa | 202 | 201 | 0.995049 | 25103-25105 | |
S | 1181 | K1181Q | nonsyn | AaA | CaG | 202 | 1 | 0.00495049 | 25103-25105 | |
S | 1181 | K1181I | nonsyn | aAa | aTa | 170 | 169 | 0.994118 | 25103-25105 | |
S | 1181 | K1181I | nonsyn | aAA | aTC | 170 | 1 | 0.00588235 | 25103-25105 | |
S | 1181 | K1181E | nonsyn | Aaa | Gaa | 157 | 156 | 0.993631 | 25103-25105 | |
S | 1181 | K1181E | nonsyn | AaA | GaG | 157 | 1 | 0.00636943 | 25103-25105 | |
S | 1181 | K1181del | del | AAA | --- | 139 | 139 | 1 | 25103-25105 | |
S | 1181 | K1181T | nonsyn | aAa | aCa | 125 | 124 | 0.992 | 25103-25105 | |
S | 1181 | K1181T | nonsyn | aAA | aCG | 125 | 1 | 0.008 | 25103-25105 | |
S | 1181 | K1181S | nonsyn | AAA | TCG | 4 | 2 | 0.5 | 25103-25105 | |
S | 1181 | K1181S | nonsyn | AAA | TCT | 4 | 1 | 0.25 | 25103-25105 | |
S | 1181 | K1181S | nonsyn | AAa | TCa | 4 | 1 | 0.25 | 25103-25105 | |
S | 1181 | K1181del1 | del | aaA | aa- | 2 | 2 | 1 | 25103-25105 | |
S | 1181 | K1181X | nonsyn | AaA | TaG | 2 | 1 | 0.5 | 25103-25105 | |
S | 1181 | K1181X | nonsyn | Aaa | Taa | 2 | 1 | 0.5 | 25103-25105 | |
S | 1181 | K1181A | nonsyn | AAA | GCG | 2 | 1 | 0.5 | 25103-25105 | |
S | 1181 | K1181A | nonsyn | AAa | GCa | 2 | 1 | 0.5 | 25103-25105 | |
S | 1181 | K1181M | nonsyn | aAA | aTG | 1 | 1 | 1 | 25103-25105 | |
S | 1181 | K1181D | nonsyn | AaA | GaT | 1 | 1 | 1 | 25103-25105 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1181 | K1181K | aaA | aaG | 1671 | 1671 | All | 0.00032 |
S | 1181 | K1181K | aaA | aaG | 1255 | 1255 | B.1.577 | 0.862543 |
S | 1181 | K1181N | aaA | aaT | 221 | 343 | All | 0.000042 |
S | 1181 | K1181N | aaA | aaC | 122 | 343 | All | 0.000023 |
S | 1181 | K1181R | aAa | aGa | 231 | 232 | All | 0.000044 |
S | 1181 | K1181R | aAA | aGG | 1 | 232 | All | 0 |
S | 1181 | K1181Q | Aaa | Caa | 201 | 202 | All | 0.000038 |
S | 1181 | K1181Q | AaA | CaG | 1 | 202 | All | 0 |
S | 1181 | K1181I | aAa | aTa | 169 | 170 | All | 0.000032 |
S | 1181 | K1181I | aAA | aTC | 1 | 170 | All | 0 |
S | 1181 | K1181E | Aaa | Gaa | 156 | 157 | All | 0.00003 |
S | 1181 | K1181E | AaA | GaG | 1 | 157 | All | 0 |
S | 1181 | K1181del | AAA | --- | 139 | 139 | All | 0.000027 |
S | 1181 | K1181I | aAa | aTa | 136 | 136 | AY.4 | 0.000212 |
S | 1181 | K1181T | aAa | aCa | 124 | 125 | All | 0.000024 |
S | 1181 | K1181T | aAA | aCG | 1 | 125 | All | 0 |
S | 1181 | K1181Q | Aaa | Caa | 117 | 117 | AY.4 | 0.000182 |
S | 1181 | K1181N | aaA | aaT | 114 | 114 | AY.54 | 0.01087 |
S | 1181 | K1181K | aaA | aaG | 100 | 100 | AY.4 | 0.000156 |
S | 1181 | K1181R | aAa | aGa | 93 | 93 | AY.4 | 0.000145 |
S | 1181 | K1181N | aaA | aaC | 62 | 70 | AY.103 | 0.000385 |
S | 1181 | K1181N | aaA | aaT | 8 | 70 | AY.103 | 0.00005 |
S | 1181 | K1181K | aaA | aaG | 65 | 65 | B.1.1 | 0.001179 |
S | 1181 | K1181K | aaA | aaG | 57 | 57 | B.1 | 0.000522 |
S | 1181 | K1181del | AAA | --- | 51 | 51 | B.1.1.7 | 0.000046 |
S | 1181 | K1181E | Aaa | Gaa | 47 | 47 | B.1.617.2 | 0.000177 |
S | 1181 | K1181K | aaA | aaG | 46 | 46 | B.1.595 | 0.012004 |
S | 1181 | K1181T | aAa | aCa | 45 | 45 | B.1.617.2 | 0.000169 |
S | 1181 | K1181T | aAa | aCa | 37 | 37 | AY.100 | 0.001702 |
S | 1181 | K1181R | aAa | aGa | 31 | 31 | B.1.1.7 | 0.000028 |
S | 1181 | K1181K | aaA | aaG | 29 | 29 | B.1.2 | 0.000255 |
S | 1181 | K1181R | aAa | aGa | 25 | 25 | B.1.576 | 0.022665 |
S | 1181 | K1181Q | Aaa | Caa | 23 | 23 | B.1.621 | 0.002036 |
S | 1181 | K1181N | aaA | aaC | 22 | 22 | B.1.1.434 | 0.007668 |
S | 1181 | K1181N | aaA | aaC | 13 | 22 | B.1.1.7 | 0.000012 |
S | 1181 | K1181N | aaA | aaT | 9 | 22 | B.1.1.7 | 0.000008 |
S | 1181 | K1181N | aaA | aaT | 20 | 20 | AY.4.2 | 0.000434 |
S | 1181 | K1181K | aaA | aaG | 20 | 20 | AY.43 | 0.000089 |
S | 1181 | K1181Q | Aaa | Caa | 20 | 20 | P.1.14 | 0.000956 |
S | 1181 | K1181E | Aaa | Gaa | 18 | 18 | AY.119 | 0.000636 |
S | 1181 | K1181E | Aaa | Gaa | 18 | 18 | B.1.1.7 | 0.000016 |
S | 1181 | K1181E | Aaa | Gaa | 17 | 17 | B.1.160 | 0.00053 |
S | 1181 | K1181T | aAa | aCa | 16 | 16 | B.1.1.316 | 0.014801 |
S | 1181 | K1181N | aaA | aaT | 15 | 16 | B.1.617.2 | 0.000056 |
S | 1181 | K1181N | aaA | aaC | 1 | 16 | B.1.617.2 | 0.000004 |
S | 1181 | K1181Q | Aaa | Caa | 14 | 14 | B.1.2 | 0.000123 |
S | 1181 | K1181E | Aaa | Gaa | 14 | 14 | B.1.239 | 0.017094 |
S | 1181 | K1181K | aaA | aaG | 11 | 11 | B.1.1.7 | 0.00001 |
S | 1181 | K1181K | aaA | aaG | 10 | 10 | AY.47 | 0.000311 |
S | 1181 | K1181R | aAa | aGa | 10 | 10 | B.1 | 0.000092 |
S | 1181 | K1181K | aaA | aaG | 10 | 10 | B.1.617.2 | 0.000038 |
S | 1181 | K1181R | aAa | aGa | 10 | 10 | B.1.637 | 0.000731 |
S | 1181 | K1181K | aaA | aaG | 9 | 9 | AY.25 | 0.000054 |
S | 1181 | K1181del | AAA | --- | 8 | 8 | B.1.177 | 0.000105 |
S | 1181 | K1181N | aaA | aaC | 8 | 8 | B.1.351.2 | 0.002421 |
S | 1181 | K1181del | AAA | --- | 7 | 7 | AY.120 | 0.00026 |
S | 1181 | K1181E | Aaa | Gaa | 7 | 7 | AY.4 | 0.000011 |
S | 1181 | K1181I | aAa | aTa | 7 | 7 | B.1.1.7 | 0.000006 |
S | 1181 | K1181R | aAa | aGa | 7 | 7 | C.37 | 0.000812 |
S | 1181 | K1181N | aaA | aaT | 6 | 6 | AY.120 | 0.000223 |
S | 1181 | K1181del | AAA | --- | 6 | 6 | AY.25 | 0.000036 |
S | 1181 | K1181del | AAA | --- | 6 | 6 | AY.4.5 | 0.000645 |
S | 1181 | K1181R | aAa | aGa | 5 | 6 | B.1.177 | 0.000066 |
S | 1181 | K1181R | aAA | aGG | 1 | 6 | B.1.177 | 0.000013 |
S | 1181 | K1181K | aaA | aaG | 6 | 6 | B.1.284 | 0.078947 |
S | 1181 | K1181T | aAa | aCa | 6 | 6 | B.1.351 | 0.000178 |
S | 1181 | K1181K | aaA | aaG | 6 | 6 | P.1 | 0.000095 |
S | 1181 | K1181T | aAa | aCa | 5 | 5 | AY.4 | 0.000008 |
S | 1181 | K1181del | AAA | --- | 5 | 5 | AY.4 | 0.000008 |
S | 1181 | K1181N | aaA | aaT | 5 | 5 | AY.44 | 0.00003 |
S | 1181 | K1181Q | Aaa | Caa | 5 | 5 | B.1.177 | 0.000066 |
S | 1181 | K1181R | aAa | aGa | 5 | 5 | B.1.2 | 0.000044 |
S | 1181 | K1181E | Aaa | Gaa | 5 | 5 | B.1.2 | 0.000044 |
S | 1181 | K1181R | aAa | aGa | 5 | 5 | B.1.427 | 0.000252 |
S | 1181 | K1181K | aaA | aaG | 5 | 5 | B.1.596 | 0.000436 |
S | 1181 | K1181S | AAA | TCG | 2 | 4 | All | 0 |
S | 1181 | K1181S | AAa | TCa | 1 | 4 | All | 0 |
S | 1181 | K1181S | AAA | TCT | 1 | 4 | All | 0 |
S | 1181 | K1181E | Aaa | Gaa | 4 | 4 | AY.103 | 0.000025 |
S | 1181 | K1181R | aAa | aGa | 4 | 4 | AY.26 | 0.000113 |
S | 1181 | K1181I | aAa | aTa | 4 | 4 | AY.3 | 0.00004 |
S | 1181 | K1181N | aaA | aaC | 3 | 4 | AY.33 | 0.0002 |
S | 1181 | K1181N | aaA | aaT | 1 | 4 | AY.33 | 0.000067 |
S | 1181 | K1181del | AAA | --- | 4 | 4 | AY.43 | 0.000018 |
S | 1181 | K1181I | aAa | aTa | 4 | 4 | AY.44 | 0.000024 |
S | 1181 | K1181K | aaA | aaG | 4 | 4 | AY.44 | 0.000024 |
S | 1181 | K1181N | aaA | aaT | 4 | 4 | AY.52 | 0.003257 |
S | 1181 | K1181K | aaA | aaG | 4 | 4 | AY.53 | 0.00115 |
S | 1181 | K1181del | AAA | --- | 4 | 4 | B.1 | 0.000037 |
S | 1181 | K1181Q | Aaa | Caa | 4 | 4 | B.1.1.7 | 0.000004 |
S | 1181 | K1181K | aaA | aaG | 4 | 4 | B.1.177 | 0.000053 |
S | 1181 | K1181del | AAA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 1181 | K1181R | aAa | aGa | 3 | 3 | AY.3.1 | 0.000256 |
S | 1181 | K1181N | aaA | aaT | 3 | 3 | AY.43 | 0.000013 |
S | 1181 | K1181R | aAa | aGa | 3 | 3 | AY.43 | 0.000013 |
S | 1181 | K1181T | aAa | aCa | 3 | 3 | AY.43 | 0.000013 |
S | 1181 | K1181E | Aaa | Gaa | 3 | 3 | AY.43 | 0.000013 |
S | 1181 | K1181Q | Aaa | Caa | 3 | 3 | AY.44 | 0.000018 |
S | 1181 | K1181N | aaA | aaT | 3 | 3 | AY.9 | 0.000203 |
S | 1181 | K1181E | Aaa | Gaa | 3 | 3 | B.1 | 0.000027 |
S | 1181 | K1181del | AAA | --- | 3 | 3 | B.1.1 | 0.000054 |
S | 1181 | K1181I | aAa | aTa | 3 | 3 | B.1.1 | 0.000054 |
S | 1181 | K1181E | Aaa | Gaa | 3 | 3 | B.1.177.21 | 0.000229 |
S | 1181 | K1181del | AAA | --- | 3 | 3 | B.1.177.4 | 0.000633 |
S | 1181 | K1181R | aAa | aGa | 3 | 3 | B.1.177.85 | 0.016304 |
S | 1181 | K1181R | aAa | aGa | 3 | 3 | B.1.617.2 | 0.000011 |
S | 1181 | K1181I | aAa | aTa | 3 | 3 | B.1.617.2 | 0.000011 |
S | 1181 | K1181Q | Aaa | Caa | 3 | 3 | B.1.617.2 | 0.000011 |
S | 1181 | K1181N | aaA | aaT | 3 | 3 | B.1.637 | 0.000219 |
S | 1181 | K1181del | AAA | --- | 3 | 3 | P.1.15 | 0.000697 |
S | 1181 | K1181T | aAA | aCG | 1 | 2 | 0.055556 | |
S | 1181 | K1181X | AaA | TaG | 1 | 2 | 0.055556 | |
S | 1181 | K1181A | AAa | GCa | 1 | 2 | 0.055556 | |
S | 1181 | K1181A | AAA | GCG | 1 | 2 | 0.055556 | |
S | 1181 | K1181X | Aaa | Taa | 1 | 2 | 0.055556 | |
S | 1181 | K1181S | AAa | TCa | 1 | 2 | 0.055556 | |
S | 1181 | K1181E | AaA | GaG | 1 | 2 | 0.055556 | |
S | 1181 | K1181E | Aaa | Gaa | 1 | 2 | 0.055556 | |
S | 1181 | K1181T | aAa | aCa | 1 | 2 | 0.055556 | |
S | 1181 | K1181S | AAA | TCG | 1 | 2 | 0.055556 | |
S | 1181 | K1181del1 | aaA | aa- | 2 | 2 | All | 0 |
S | 1181 | K1181X | AaA | TaG | 1 | 2 | All | 0 |
S | 1181 | K1181X | Aaa | Taa | 1 | 2 | All | 0 |
S | 1181 | K1181A | AAA | GCG | 1 | 2 | All | 0 |
S | 1181 | K1181A | AAa | GCa | 1 | 2 | All | 0 |
S | 1181 | K1181N | aaA | aaT | 2 | 2 | AY.100 | 0.000092 |
S | 1181 | K1181I | aAa | aTa | 2 | 2 | AY.100 | 0.000092 |
S | 1181 | K1181del | AAA | --- | 2 | 2 | AY.23 | 0.000139 |
S | 1181 | K1181N | aaA | aaT | 2 | 2 | AY.25 | 0.000012 |
S | 1181 | K1181K | aaA | aaG | 2 | 2 | AY.3 | 0.00002 |
S | 1181 | K1181N | aaA | aaT | 2 | 2 | AY.39 | 0.000049 |
S | 1181 | K1181I | aAa | aTa | 2 | 2 | AY.43 | 0.000009 |
S | 1181 | K1181N | aaA | aaT | 2 | 2 | AY.46 | 0.000208 |
S | 1181 | K1181R | aAa | aGa | 2 | 2 | AY.46.4 | 0.000329 |
S | 1181 | K1181del | AAA | --- | 2 | 2 | AY.5 | 0.000041 |
S | 1181 | K1181N | aaA | aaT | 2 | 2 | AY.62 | 0.000871 |
S | 1181 | K1181K | aaA | aaG | 2 | 2 | AY.75.1 | 0.000361 |
S | 1181 | K1181N | aaA | aaT | 2 | 2 | AY.81 | 0.003984 |
S | 1181 | K1181T | aAa | aCa | 2 | 2 | AY.9.2 | 0.000073 |
S | 1181 | K1181K | aaA | aaG | 2 | 2 | B.1.1.519 | 0.000079 |
S | 1181 | K1181N | aaA | aaT | 2 | 2 | B.1.1.526 | 0.007092 |
S | 1181 | K1181R | aAa | aGa | 2 | 2 | B.1.177.15 | 0.001262 |
S | 1181 | K1181I | aAa | aTa | 2 | 2 | B.1.177.60 | 0.000437 |
S | 1181 | K1181N | aaA | aaT | 1 | 2 | B.1.2 | 0.000009 |
S | 1181 | K1181N | aaA | aaC | 1 | 2 | B.1.2 | 0.000009 |
S | 1181 | K1181E | Aaa | Gaa | 2 | 2 | B.1.234 | 0.000264 |
S | 1181 | K1181K | aaA | aaG | 2 | 2 | B.1.429 | 0.000047 |
S | 1181 | K1181R | aAa | aGa | 2 | 2 | B.1.526 | 0.000047 |
S | 1181 | K1181Q | Aaa | Caa | 2 | 2 | B.1.595 | 0.000522 |
S | 1181 | K1181del | AAA | --- | 2 | 2 | P.1 | 0.000032 |
S | 1181 | K1181N | aaA | aaC | 1 | 2 | P.1 | 0.000016 |
S | 1181 | K1181N | aaA | aaT | 1 | 2 | P.1 | 0.000016 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | 0.055556 | |
S | 1181 | K1181del | AAA | --- | 1 | 1 | A | 0.000387 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AD.2 | 0.000219 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | AE.3 | 0.032258 |
S | 1181 | K1181M | aAA | aTG | 1 | 1 | All | 0 |
S | 1181 | K1181D | AaA | GaT | 1 | 1 | All | 0 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.100 | 0.000046 |
S | 1181 | K1181M | aAA | aTG | 1 | 1 | AY.102 | 0.000027 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | AY.103 | 0.000006 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | AY.110 | 0.000113 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | AY.111 | 0.000183 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.111 | 0.000183 |
S | 1181 | K1181I | aAa | aTa | 1 | 1 | AY.113 | 0.000142 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.118 | 0.000063 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | AY.120 | 0.000037 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.19 | 0.00114 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.20 | 0.000039 |
S | 1181 | K1181I | aAa | aTa | 1 | 1 | AY.23 | 0.00007 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | AY.23 | 0.00007 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | AY.24 | 0.000431 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.24 | 0.000431 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | AY.25 | 0.000006 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | AY.25 | 0.000006 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | AY.26 | 0.000028 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | AY.26 | 0.000028 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | AY.29 | 0.000016 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | AY.3 | 0.00001 |
S | 1181 | K1181S | AAA | TCT | 1 | 1 | AY.30 | 0.000396 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.35 | 0.000233 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | AY.39 | 0.000025 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | AY.4 | 0.000002 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.4.2 | 0.000022 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | AY.4.5 | 0.000107 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.42 | 0.00004 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | AY.42 | 0.00004 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | AY.42 | 0.00004 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | AY.44 | 0.000006 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.44 | 0.000006 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | AY.46.1 | 0.001027 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | AY.46.2 | 0.000635 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | AY.5 | 0.000021 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | AY.5 | 0.000021 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | AY.5.3 | 0.000337 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | AY.5.4 | 0.000277 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | AY.54 | 0.000095 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.6 | 0.000041 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | AY.6 | 0.000041 |
S | 1181 | K1181I | aAa | aTa | 1 | 1 | AY.6 | 0.000041 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.61 | 0.000105 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | AY.61 | 0.000105 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.68 | 0.000274 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 1181 | K1181I | aAa | aTa | 1 | 1 | AY.80 | 0.001129 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.81 | 0.001992 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | AY.85 | 0.000427 |
S | 1181 | K1181S | AAA | TCG | 1 | 1 | AY.85 | 0.000427 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | AY.88 | 0.000884 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | AY.9 | 0.000068 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AY.9.2 | 0.000037 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | AZ.1 | 0.000867 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | AZ.2 | 0.000821 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B | 0.000128 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | B.1 | 0.000009 |
S | 1181 | K1181Q | AaA | CaG | 1 | 1 | B.1 | 0.000009 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | B.1.1 | 0.000018 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | B.1.1 | 0.000018 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | B.1.1 | 0.000018 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.1.113 | 0.006993 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.1.261 | 0.008621 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | B.1.1.326 | 0.001761 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | B.1.1.39 | 0.00051 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.1.413 | 0.006897 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | B.1.1.432 | 0.001266 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | B.1.1.448 | 0.002033 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | B.1.1.523 | 0.001563 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | B.1.1.57 | 0.011494 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | B.1.1.63 | 0.000386 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1181 | K1181D | AaA | GaT | 1 | 1 | B.1.1.7 | 0.000001 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | B.1.1.70 | 0.000341 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
S | 1181 | K1181I | aAa | aTa | 1 | 1 | B.1.177 | 0.000013 |
S | 1181 | K1181del1 | aaA | aa- | 1 | 1 | B.1.177 | 0.000013 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | B.1.177.4 | 0.000211 |
S | 1181 | K1181del1 | aaA | aa- | 1 | 1 | B.1.177.42 | 0.000894 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.177.44 | 0.000519 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.177.53 | 0.002392 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | B.1.177.73 | 0.000566 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | B.1.177.9 | 0.001332 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.218 | 0.005155 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.221.1 | 0.002907 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.258 | 0.000067 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | B.1.258 | 0.000067 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | B.1.258.17 | 0.000104 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | B.1.258.17 | 0.000104 |
S | 1181 | K1181I | aAa | aTa | 1 | 1 | B.1.258.21 | 0.007752 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | B.1.349 | 0.000715 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.351 | 0.00003 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | B.1.36 | 0.000146 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | B.1.36.22 | 0.001208 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.36.8 | 0.001 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | B.1.389 | 0.001002 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | B.1.429 | 0.000024 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | B.1.429 | 0.000024 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | B.1.526 | 0.000024 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.567 | 0.003333 |
S | 1181 | K1181Q | Aaa | Caa | 1 | 1 | B.1.575 | 0.000303 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.576 | 0.000907 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.582 | 0.000491 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | B.1.582 | 0.000491 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | B.1.596 | 0.000087 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.609 | 0.000479 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | B.1.609 | 0.000479 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | B.1.609 | 0.000479 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | B.1.621 | 0.000089 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 1181 | K1181I | aAA | aTC | 1 | 1 | B.1.621 | 0.000089 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | B.1.621 | 0.000089 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | C.17 | 0.055556 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | C.36.3 | 0.000567 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | C.37 | 0.000116 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | C.37 | 0.000116 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | C.37 | 0.000116 |
S | 1181 | K1181K | aaA | aaG | 1 | 1 | D.2 | 0.000075 |
S | 1181 | K1181E | Aaa | Gaa | 1 | 1 | P.1 | 0.000016 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | P.1.15 | 0.000232 |
S | 1181 | K1181N | aaA | aaC | 1 | 1 | P.1.16 | 0.000374 |
S | 1181 | K1181R | aAa | aGa | 1 | 1 | P.1.7 | 0.000319 |
S | 1181 | K1181T | aAa | aCa | 1 | 1 | P.1.7 | 0.000319 |
S | 1181 | K1181N | aaA | aaT | 1 | 1 | Q.1 | 0.000126 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | Q.2 | 0.000613 |
S | 1181 | K1181del | AAA | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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