CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1178

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1178N1178NsynaaCaaT1318513185125094-25096
S1178N1178DnonsynAacGac1451440.99310325094-25096
S1178N1178DnonsynAaCGaT14510.0068965525094-25096
S1178N1178deldelAAC---134134125094-25096
S1178N1178HnonsynAacCac5252125094-25096
S1178N1178KnonsynaaCaaG27150.55555625094-25096
S1178N1178KnonsynaaCaaA27120.44444425094-25096
S1178N1178YnonsynAacTac2020125094-25096
S1178N1178SnonsynaAcaGc19180.94736825094-25096
S1178N1178SnonsynaACaGT1910.052631625094-25096
S1178N1178TnonsynaAcaCc99125094-25096
S1178N1178InonsynaAcaTc66125094-25096
S1178N1178del2delAAc--c22125094-25096
S1178N1178GnonsynAACGGT210.525094-25096
S1178N1178GnonsynAAcGGc210.525094-25096
S1178N1178del1delAac-ac11125094-25096
S1178N1178LnonsynAAcCTc11125094-25096
S1178N1178RnonsynaACaGG11125094-25096

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1178N1178NaaCaaT1318513185All0.002522
S1178N1178NaaCaaT49114911B.1.1.70.004396
S1178N1178NaaCaaT659659B.1.617.20.002481
S1178N1178NaaCaaT575575B.1.1770.007571
S1178N1178NaaCaaT556556AY.40.000865
S1178N1178NaaCaaT545545AY.130.087733
S1178N1178NaaCaaT480480AY.440.002922
S1178N1178NaaCaaT438438AY.250.002634
S1178N1178NaaCaaT434434AY.60.01785
S1178N1178NaaCaaT338338Q.80.055739
S1178N1178NaaCaaT310310AY.430.001373
S1178N1178NaaCaaT240240P.10.003781
S1178N1178NaaCaaT196196B.1.1.2550.593939
S1178N1178NaaCaaT188188AY.39.10.007447
S1178N1178NaaCaaT184184AY.1030.001142
S1178N1178NaaCaaT176176B.1.10.003193
S1178N1178NaaCaaT164164AY.30.001631
S1178N1178NaaCaaT147147Q.60.97351
S1178N1178DAacGac144145All0.000028
S1178N1178DAaCGaT1145All0
S1178N1178NaaCaaT141141B.1.20.001242
S1178N1178delAAC---134134All0.000026
S1178N1178NaaCaaT128128B.1.1.2220.026112
S1178N1178NaaCaaT9999B.1.6210.008763
S1178N1178NaaCaaT9292AY.1020.002439
S1178N1178NaaCaaT9191B.10.000834
S1178N1178DAacGac8989B.1.5230.218137
S1178N1178NaaCaaT6767AY.50.001383
S1178N1178NaaCaaT6565AY.1000.00299
S1178N1178NaaCaaT5555AY.1130.007831
S1178N1178HAacCac5252All0.00001
S1178N1178NaaCaaT5252AY.3.10.004433
S1178N1178NaaCaaT5151AY.470.001586
S1178N1178NaaCaaT5050AY.750.002801
S1178N1178NaaCaaT4949AY.390.001211
S1178N1178delAAC---4747B.1.1.70.000042
S1178N1178NaaCaaT4646B.1.5260.001081
S1178N1178NaaCaaT4545AY.300.017808
S1178N1178NaaCaaT4545AY.410.013228
S1178N1178NaaCaaT4545AY.90.003042
S1178N1178NaaCaaT4444AY.360.006521
S1178N1178NaaCaaT4343AY.290.000678
S1178N1178NaaCaaT4040AY.340.003879
S1178N1178NaaCaaT3939AY.99.20.003594
S1178N1178NaaCaaT3636B.1.4290.000847
S1178N1178HAacCac3535AY.250.000211
S1178N1178NaaCaaT3535B.1.1.3160.032377
S1178N1178NaaCaaT3232AY.200.001244
S1178N1178NaaCaaT3232C.370.003714
S1178N1178NaaCaaT3030B.1.3510.000892
S1178N1178NaaCaaT2828B.1.1.1010.28
S1178N1178KaaCaaG1527All0.000003
S1178N1178KaaCaaA1227All0.000002
S1178N1178NaaCaaT2727AY.1190.000953
S1178N1178NaaCaaT2727AY.610.002829
S1178N1178NaaCaaT2727AY.740.003122
S1178N1178NaaCaaT2626AY.270.001683
S1178N1178NaaCaaT2525P.1.140.001195
S1178N1178NaaCaaT2323AY.260.000651
S1178N1178NaaCaaT2323B.1.1.2140.001276
S1178N1178NaaCaaT2323B.1.4700.032303
S1178N1178NaaCaaT2121W.40.028378
S1178N1178YAacTac2020All0.000004
S1178N1178NaaCaaT2020B.1.2580.001331
S1178N1178SaAcaGc1819All0.000003
S1178N1178SaACaGT119All0
S1178N1178NaaCaaT1818AY.4.20.00039
S1178N1178NaaCaaT1717AY.1170.001437
S1178N1178NaaCaaT1717B.1.1.280.005291
S1178N1178NaaCaaT1717B.1.2210.001208
S1178N1178NaaCaaT1717B.1.466.20.006651
S1178N1178NaaCaaT1616B.1.1.2650.050473
S1178N1178NaaCaaT1515B.1.1.3690.006693
S1178N1178NaaCaaT1414AY.1160.004015
S1178N1178NaaCaaT1414B.1.360.002043
S1178N1178NaaCaaT1313AY.600.012195
S1178N1178NaaCaaT1313B.1.1.5190.000516
S1178N1178NaaCaaT1212AY.540.001144
S1178N1178NaaCaaT1212B.1.4270.000606
S1178N1178NaaCaaT1111AY.460.001145
S1178N1178NaaCaaT1111B.1.4970.003462
S1178N1178NaaCaaT1111B.1.5950.002871
S1178N1178NaaCaaT1111B.1.5960.000959
S1178N1178KaaCaaG1111B.1.617.20.000041
S1178N1178NaaCaaT1111P.1.70.003512
S1178N1178NaaCaaT1111P.20.002053
S1178N1178NaaCaaT1010AY.1180.000626
S1178N1178NaaCaaT1010AY.230.000697
S1178N1178NaaCaaT1010AY.4.50.001075
S1178N1178NaaCaaT1010AY.9.20.000367
S1178N1178NaaCaaT1010B.1.1.330.004209
S1178N1178TaAcaCc99All0.000002
S1178N1178NaaCaaT99AY.1200.000335
S1178N1178NaaCaaT99AY.420.000362
S1178N1178NaaCaaT99AY.46.60.00065
S1178N1178NaaCaaT99AY.75.10.001623
S1178N1178NaaCaaT99AY.98.10.000436
S1178N1178NaaCaaT99B.1.110.30.006466
S1178N1178NaaCaaT99B.1.1600.000281
S1178N1178NaaCaaT99B.1.617.10.001161
S1178N1178NaaCaaT99C.36.30.005105
S1178N1178NaaCaaT88AY.23.10.003339
S1178N1178NaaCaaT88AY.450.000973
S1178N1178NaaCaaT88AY.790.009685
S1178N1178NaaCaaT88AY.840.0035
S1178N1178DAacGac88B.10.000073
S1178N1178NaaCaaT88B.1.1.1980.011747
S1178N1178NaaCaaT88B.1.1.3170.003294
S1178N1178NaaCaaT88B.1.177.430.011817
S1178N1178NaaCaaT77AY.1010.003433
S1178N1178delAAC---77AY.1200.00026
S1178N1178NaaCaaT77AY.330.000467
S1178N1178NaaCaaT77AY.4.40.002864
S1178N1178NaaCaaT77AY.560.011236
S1178N1178NaaCaaT77B.1.1.4160.006335
S1178N1178DAacGac77B.1.1.70.000006
S1178N1178NaaCaaT77B.1.1470.005291
S1178N1178NaaCaaT77B.1.160.250.077778
S1178N1178delAAC---77B.1.1770.000092
S1178N1178NaaCaaT77B.1.2430.000487
S1178N1178NaaCaaT77B.1.5650.005673
S1178N1178NaaCaaT77B.310.026119
S1178N1178NaaCaaT77P.1.170.001132
S1178N1178NaaCaaT77Q.10.000884
S1178N1178IaAcaTc66All0.000001
S1178N1178NaaCaaT66AY.1060.002009
S1178N1178NaaCaaT66AY.1110.001099
S1178N1178delAAC---66AY.250.000036
S1178N1178delAAC---66AY.40.000009
S1178N1178delAAC---66AY.4.50.000645
S1178N1178NaaCaaT66AY.46.20.003812
S1178N1178NaaCaaT66AY.880.005305
S1178N1178NaaCaaT66AY.920.001724
S1178N1178NaaCaaT66AY.980.000474
S1178N1178NaaCaaT66B.1.177.810.001136
S1178N1178NaaCaaT66B.1.3110.001647
S1178N1178NaaCaaT66B.1.4410.057692
S1178N1178YAacTac66B.1.617.20.000023
S1178N1178NaaCaaT55AY.1210.000677
S1178N1178DAacGac55AY.23.10.002087
S1178N1178NaaCaaT55AY.280.009452
S1178N1178NaaCaaT55AY.370.00158
S1178N1178NaaCaaT55AY.770.005637
S1178N1178NaaCaaT55B.1.2340.00066
S1178N1178NaaCaaT55B.1.36.160.007123
S1178N1178NaaCaaT55B.1.5610.001985
S1178N1178NaaCaaT55B.1.6090.002397
S1178N1178NaaCaaT55B.1.6280.001762
S1178N1178NaaCaaT55C.160.005302
S1178N1178NaaCaaT44AY.1090.002959
S1178N1178NaaCaaT44AY.1140.000924
S1178N1178NaaCaaT44AY.120.10.001284
S1178N1178DAacGac44AY.40.000006
S1178N1178delAAC---44AY.430.000018
S1178N1178NaaCaaT44AY.46.40.000658
S1178N1178NaaCaaT44AY.5.30.00135
S1178N1178NaaCaaT44AY.930.001092
S1178N1178delAAC---44B.10.000037
S1178N1178NaaCaaT44B.1.1.2160.003562
S1178N1178NaaCaaT44B.1.1.2840.00043
S1178N1178NaaCaaT44B.1.1.500.002716
S1178N1178SaAcaGc44B.1.1.70.000004
S1178N1178YAacTac44B.1.1.70.000004
S1178N1178NaaCaaT44B.1.2180.020619
S1178N1178NaaCaaT44B.1.2400.000862
S1178N1178NaaCaaT44B.1.2650.005083
S1178N1178NaaCaaT44B.1.3060.022857
S1178N1178NaaCaaT44B.1.3820.035714
S1178N1178NaaCaaT44B.1.438.10.000429
S1178N1178HAacCac44B.1.617.20.000015
S1178N1178NaaCaaT44B.1.6250.009412
S1178N1178NaaCaaT44B.1.9.40.02454
S1178N1178NaaCaaT44B.400.001457
S1178N1178NaaCaaT44P.1.150.000929
S1178N1178NaaCaaT44R.10.00036
S1178N1178DAacGac33AY.1030.000019
S1178N1178NaaCaaT33AY.16.10.00141
S1178N1178DAacGac33AY.4.20.000065
S1178N1178NaaCaaT33AY.590.001589
S1178N1178NaaCaaT33AY.620.001307
S1178N1178NaaCaaT33AY.650.001599
S1178N1178NaaCaaT33AY.730.001996
S1178N1178NaaCaaT33AY.9.10.000251
S1178N1178DAacGac33B.1.10.000054
S1178N1178NaaCaaT33B.1.1.1530.003286
S1178N1178NaaCaaT33B.1.1.2770.002276
S1178N1178NaaCaaT33B.1.1.4340.001046
S1178N1178SaAcaGc33B.1.1.5190.000119
S1178N1178NaaCaaT33B.1.177.320.004049
S1178N1178delAAC---33B.1.177.40.000633
S1178N1178NaaCaaT33B.1.177.860.00055
S1178N1178NaaCaaT33B.1.3910.003382
S1178N1178NaaCaaT33B.1.4920.021127
S1178N1178NaaCaaT33B.1.5300.021429
S1178N1178NaaCaaT33B.1.5700.008824
S1178N1178delAAC---33B.1.617.20.000011
S1178N1178DAacGac33B.1.617.20.000011
S1178N1178delAAC---33P.1.150.000697
S1178N1178DAacGac120.055556
S1178N1178GAACGGT120.055556
S1178N1178DAaCGaT120.055556
S1178N1178SaAcaGc120.055556
S1178N1178GAAcGGc120.055556
S1178N1178SaACaGT120.055556
S1178N1178DAacGac22A.10.000564
S1178N1178del2AAc--c22All0
S1178N1178GAACGGT12All0
S1178N1178GAAcGGc12All0
S1178N1178DAacGac22AY.1020.000053
S1178N1178YAacTac22AY.1030.000012
S1178N1178NaaCaaT22AY.1070.000932
S1178N1178NaaCaaT22AY.140.000176
S1178N1178delAAC---22AY.190.002281
S1178N1178TaAcaCc22AY.200.000078
S1178N1178delAAC---22AY.230.000139
S1178N1178NaaCaaT22AY.380.000999
S1178N1178NaaCaaT22AY.46.30.001867
S1178N1178NaaCaaT22AY.680.000547
S1178N1178NaaCaaT22AY.780.003082
S1178N1178NaaCaaT22AY.860.00166
S1178N1178NaaCaaT22AY.910.001461
S1178N1178SaAcaGc22AY.980.000158
S1178N1178HAacCac22AY.980.000158
S1178N1178NaaCaaT22AY.990.002099
S1178N1178DAacGac22AZ.10.001735
S1178N1178NaaCaaT22B0.000256
S1178N1178delAAC---22B.1.10.000036
S1178N1178NaaCaaT22B.1.1.1340.022727
S1178N1178NaaCaaT22B.1.1.1920.004619
S1178N1178HAacCac22B.1.1.2000.014925
S1178N1178NaaCaaT22B.1.1.2100.011429
S1178N1178NaaCaaT22B.1.1.3180.000604
S1178N1178NaaCaaT22B.1.1.3260.003521
S1178N1178NaaCaaT22B.1.1.4640.002946
S1178N1178NaaCaaT22B.1.1.5260.007092
S1178N1178TaAcaCc22B.1.1.70.000002
S1178N1178del2AAc--c22B.1.1.70.000002
S1178N1178IaAcaTc22B.1.1.70.000002
S1178N1178NaaCaaT22B.1.160.160.001859
S1178N1178DAacGac22B.1.1770.000026
S1178N1178NaaCaaT22B.1.177.210.000153
S1178N1178NaaCaaT22B.1.177.40.000422
S1178N1178NaaCaaT22B.1.177.440.001038
S1178N1178NaaCaaT22B.1.177.600.000437
S1178N1178NaaCaaT22B.1.214.20.001199
S1178N1178NaaCaaT22B.1.230.012121
S1178N1178NaaCaaT22B.1.2390.002442
S1178N1178NaaCaaT22B.1.3490.00143
S1178N1178NaaCaaT22B.1.36.290.001035
S1178N1178NaaCaaT22B.1.5170.000854
S1178N1178NaaCaaT22B.1.5600.009259
S1178N1178NaaCaaT22B.1.5640.000852
S1178N1178KaaCaaA22B.1.5960.000174
S1178N1178NaaCaaT22B.1.6370.000146
S1178N1178NaaCaaT22C.320.046512
S1178N1178NaaCaaT22C.36.3.10.005435
S1178N1178NaaCaaT22D.20.00015
S1178N1178delAAC---22P.10.000032
S1178N1178NaaCaaT22P.1.10.000635
S1178N1178NaaCaaT22P.1.120.000968
S1178N1178NaaCaaT110.055556
S1178N1178delAAC---11A0.000387
S1178N1178IaAcaTc11A.2.40.003367
S1178N1178NaaCaaT11A.2.50.000499
S1178N1178NaaCaaT11A.23.10.000704
S1178N1178NaaCaaT11A.30.002096
S1178N1178NaaCaaT11AD.20.000219
S1178N1178NaaCaaT11AH.30.003802
S1178N1178LAAcCTc11All0
S1178N1178RaACaGG11All0
S1178N1178del1Aac-ac11All0
S1178N1178NaaCaaT11AU.20.002421
S1178N1178NaaCaaT11AY.10.000396
S1178N1178YAacTac11AY.1020.000027
S1178N1178HAacCac11AY.1030.000006
S1178N1178SaAcaGc11AY.1030.000006
S1178N1178KaaCaaA11AY.1030.000006
S1178N1178NaaCaaT11AY.1040.001984
S1178N1178NaaCaaT11AY.1100.000113
S1178N1178delAAC---11AY.1110.000183
S1178N1178NaaCaaT11AY.1150.005208
S1178N1178NaaCaaT11AY.116.10.000311
S1178N1178NaaCaaT11AY.120.000316
S1178N1178NaaCaaT11AY.120.2.10.000498
S1178N1178SaAcaGc11AY.140.000088
S1178N1178NaaCaaT11AY.160.00038
S1178N1178NaaCaaT11AY.20.000356
S1178N1178SaAcaGc11AY.200.000039
S1178N1178HAacCac11AY.200.000039
S1178N1178KaaCaaA11AY.230.00007
S1178N1178delAAC---11AY.240.000431
S1178N1178DAacGac11AY.250.000006
S1178N1178YAacTac11AY.260.000028
S1178N1178HAacCac11AY.30.00001
S1178N1178delAAC---11AY.300.000396
S1178N1178del1Aac-ac11AY.330.000067
S1178N1178NaaCaaT11AY.34.10.00051
S1178N1178delAAC---11AY.350.000233
S1178N1178NaaCaaT11AY.350.000233
S1178N1178HAacCac11AY.390.000025
S1178N1178KaaCaaG11AY.40.000002
S1178N1178YAacTac11AY.40.000002
S1178N1178HAacCac11AY.40.000002
S1178N1178IaAcaTc11AY.40.000002
S1178N1178NaaCaaT11AY.4.30.000842
S1178N1178DAacGac11AY.4.50.000107
S1178N1178KaaCaaG11AY.430.000004
S1178N1178IaAcaTc11AY.440.000006
S1178N1178KaaCaaA11AY.440.000006
S1178N1178SaAcaGc11AY.440.000006
S1178N1178SaAcaGc11AY.50.000021
S1178N1178TaAcaCc11AY.50.000021
S1178N1178delAAC---11AY.50.000021
S1178N1178HAacCac11AY.50.000021
S1178N1178delAAC---11AY.5.30.000337
S1178N1178NaaCaaT11AY.500.000799
S1178N1178NaaCaaT11AY.520.000814
S1178N1178DAacGac11AY.520.000814
S1178N1178NaaCaaT11AY.570.000656
S1178N1178delAAC---11AY.60.000041
S1178N1178YAacTac11AY.610.000105
S1178N1178delAAC---11AY.680.000274
S1178N1178NaaCaaT11AY.690.000187
S1178N1178delAAC---11AY.75.10.00018
S1178N1178delAAC---11AY.810.001992
S1178N1178NaaCaaT11AY.850.000427
S1178N1178LAAcCTc11AY.850.000427
S1178N1178DAacGac11AY.880.000884
S1178N1178DAacGac11AY.90.000068
S1178N1178delAAC---11AY.90.000068
S1178N1178KaaCaaA11AY.90.000068
S1178N1178delAAC---11AY.9.20.000037
S1178N1178DAacGac11AY.99.20.000092
S1178N1178KaaCaaA11B0.000128
S1178N1178TaAcaCc11B.10.000009
S1178N1178YAacTac11B.10.000009
S1178N1178HAacCac11B.10.000009
S1178N1178IaAcaTc11B.10.000009
S1178N1178TaAcaCc11B.1.10.000018
S1178N1178NaaCaaT11B.1.1.10.000327
S1178N1178delAAC---11B.1.1.1130.006993
S1178N1178delAAC---11B.1.1.1390.022727
S1178N1178delAAC---11B.1.1.1590.004673
S1178N1178NaaCaaT11B.1.1.1630.007634
S1178N1178NaaCaaT11B.1.1.2070.001182
S1178N1178NaaCaaT11B.1.1.2290.005747
S1178N1178delAAC---11B.1.1.2360.006897
S1178N1178NaaCaaT11B.1.1.2400.004695
S1178N1178NaaCaaT11B.1.1.2410.00207
S1178N1178NaaCaaT11B.1.1.270.00565
S1178N1178NaaCaaT11B.1.1.2940.001266
S1178N1178NaaCaaT11B.1.1.3110.000358
S1178N1178NaaCaaT11B.1.1.3120.001912
S1178N1178KaaCaaG11B.1.1.3260.001761
S1178N1178NaaCaaT11B.1.1.3480.000796
S1178N1178NaaCaaT11B.1.1.370.000193
S1178N1178NaaCaaT11B.1.1.3720.000689
S1178N1178NaaCaaT11B.1.1.3740.002375
S1178N1178NaaCaaT11B.1.1.3880.045455
S1178N1178NaaCaaT11B.1.1.390.00051
S1178N1178NaaCaaT11B.1.1.4260.035714
S1178N1178NaaCaaT11B.1.1.4320.001266
S1178N1178NaaCaaT11B.1.1.4350.034483
S1178N1178NaaCaaT11B.1.1.4860.001577
S1178N1178NaaCaaT11B.1.1.5210.005348
S1178N1178NaaCaaT11B.1.1.5230.001563
S1178N1178HAacCac11B.1.1.70.000001
S1178N1178KaaCaaA11B.1.1.70.000001
S1178N1178KaaCaaA11B.1.1180.006711
S1178N1178NaaCaaT11B.1.1260.001276
S1178N1178DAacGac11B.1.1600.000031
S1178N1178delAAC---11B.1.160.230.004831
S1178N1178TaAcaCc11B.1.1670.007812
S1178N1178KaaCaaA11B.1.1770.000013
S1178N1178NaaCaaT11B.1.177.120.000152
S1178N1178NaaCaaT11B.1.177.160.000664
S1178N1178delAAC---11B.1.177.170.000821
S1178N1178delAAC---11B.1.177.210.000076
S1178N1178NaaCaaT11B.1.177.230.003236
S1178N1178NaaCaaT11B.1.177.330.001645
S1178N1178NaaCaaT11B.1.177.530.002392
S1178N1178YAacTac11B.1.177.540.000606
S1178N1178delAAC---11B.1.177.540.000606
S1178N1178NaaCaaT11B.1.177.570.000281
S1178N1178NaaCaaT11B.1.177.70.000165
S1178N1178HAacCac11B.1.177.810.000189
S1178N1178delAAC---11B.1.177.830.001481
S1178N1178NaaCaaT11B.1.177.830.001481
S1178N1178NaaCaaT11B.1.177.870.000728
S1178N1178NaaCaaT11B.1.1890.004292
S1178N1178NaaCaaT11B.1.1950.005025
S1178N1178NaaCaaT11B.1.1990.004132
S1178N1178KaaCaaA11B.1.20.000009
S1178N1178SaAcaGc11B.1.20.000009
S1178N1178NaaCaaT11B.1.2100.002132
S1178N1178NaaCaaT11B.1.214.10.02
S1178N1178delAAC---11B.1.2180.005155
S1178N1178delAAC---11B.1.221.10.002907
S1178N1178NaaCaaT11B.1.2320.000537
S1178N1178KaaCaaG11B.1.2430.00007
S1178N1178NaaCaaT11B.1.3200.001245
S1178N1178NaaCaaT11B.1.3320.003497
S1178N1178NaaCaaT11B.1.3330.010526
S1178N1178NaaCaaT11B.1.3400.004292
S1178N1178RaACaGG11B.1.36.290.000517
S1178N1178TaAcaCc11B.1.3670.000792
S1178N1178NaaCaaT11B.1.3770.004566
S1178N1178NaaCaaT11B.1.3780.006849
S1178N1178KaaCaaA11B.1.3980.002976
S1178N1178NaaCaaT11B.1.4080.00369
S1178N1178NaaCaaT11B.1.4200.010417
S1178N1178DAacGac11B.1.4270.00005
S1178N1178DAacGac11B.1.4290.000024
S1178N1178NaaCaaT11B.1.5250.000113
S1178N1178NaaCaaT11B.1.5390.017544
S1178N1178NaaCaaT11B.1.5510.00129
S1178N1178NaaCaaT11B.1.5580.004566
S1178N1178NaaCaaT11B.1.5820.000491
S1178N1178NaaCaaT11B.1.5890.007576
S1178N1178NaaCaaT11B.1.6050.005952
S1178N1178SaAcaGc11B.1.617.20.000004
S1178N1178delAAC---11B.1.6210.000089
S1178N1178NaaCaaT11B.1.840.020833
S1178N1178NaaCaaT11B.200.023256
S1178N1178NaaCaaT11B.30.000831
S1178N1178YAacTac11B.400.000364
S1178N1178NaaCaaT11B.6.60.000889
S1178N1178NaaCaaT11C.140.004329
S1178N1178delAAC---11C.170.055556
S1178N1178NaaCaaT11C.300.001727
S1178N1178delAAC---11C.370.000116
S1178N1178NaaCaaT11C.80.004464
S1178N1178NaaCaaT11N.90.005952
S1178N1178SaAcaGc11P.10.000016
S1178N1178YAacTac11P.10.000016
S1178N1178delAAC---11P.1.10.000318
S1178N1178NaaCaaT11P.1.100.000269
S1178N1178DAacGac11P.1.160.000374
S1178N1178NaaCaaT11P.1.20.001156
S1178N1178NaaCaaT11P.60.003145
S1178N1178delAAC---11Q.20.000613
S1178N1178delAAC---11U.30.003861
S1178N1178NaaCaaT11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.