CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1176

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1176V1176FnonsynGttTtt130343130343125088-25090
S1176V1176deldelGTT---136136125088-25090
S1176V1176VsyngtTgtC102920.90196125088-25090
S1176V1176VsyngtTgtG10260.058823525088-25090
S1176V1176VsyngtTgtA10240.039215725088-25090
S1176V1176InonsynGttAtt53520.98113225088-25090
S1176V1176InonsynGtTAtC5310.018867925088-25090
S1176V1176AnonsyngTtgCt13120.92307725088-25090
S1176V1176AnonsyngTTgCC1310.076923125088-25090
S1176V1176LnonsynGttCtt1212125088-25090
S1176V1176GnonsyngTtgGt66125088-25090
S1176V1176DnonsyngTtgAt33125088-25090
S1176V1176TnonsynGTtACt320.66666725088-25090
S1176V1176del2delgTTg--320.66666725088-25090
S1176V1176del2delGTT--N310.33333325088-25090
S1176V1176TnonsynGTTACC310.33333325088-25090
S1176V1176del1delGtt-tt210.525088-25090
S1176V1176del1delgtTgt-210.525088-25090
S1176V1176SnonsynGTTAGC11125088-25090
S1176V1176KnonsynGTTAAA11125088-25090
S1176V1176RnonsynGTtCGt11125088-25090
S1176V1176YnonsynGTtTAt11125088-25090

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1176V1176FGttTtt130343130343All0.02493
S1176V1176FGttTtt6258962589P.10.986026
S1176V1176FGttTtt2071420714P.1.140.990153
S1176V1176FGttTtt61156115P.1.170.989162
S1176V1176FGttTtt52855285P.20.986376
S1176V1176FGttTtt42614261P.1.150.990009
S1176V1176FGttTtt36503650P.1.100.983562
S1176V1176FGttTtt32063206B.1.1.280.997821
S1176V1176FGttTtt31133113P.1.70.993934
S1176V1176FGttTtt30233023P.1.10.960292
S1176V1176FGttTtt24302430P.1.160.909091
S1176V1176FGttTtt19501950P.1.120.943853
S1176V1176FGttTtt19031903B.1.1.70.001704
S1176V1176FGttTtt11431143P.1.17.11
S1176V1176FGttTtt10781078P.1.130.968553
S1176V1176FGttTtt10241024P.1.41
S1176V1176FGttTtt863863P.1.20.997688
S1176V1176FGttTtt730730B.1.617.20.002749
S1176V1176FGttTtt618618P.30.985646
S1176V1176FGttTtt520520B.1.20.004579
S1176V1176FGttTtt513513P.1.60.998054
S1176V1176FGttTtt384384AY.40.000598
S1176V1176FGttTtt318318P.61
S1176V1176FGttTtt264264B.1.3690.075299
S1176V1176FGttTtt263263B.1.177.750.273673
S1176V1176FGttTtt263263P.41
S1176V1176FGttTtt249249AY.1190.008792
S1176V1176FGttTtt246246B.10.002253
S1176V1176FGttTtt241241AY.430.001068
S1176V1176FGttTtt226226B.1.3240.362761
S1176V1176FGttTtt225225P.70.982533
S1176V1176FGttTtt209209P.1.81
S1176V1176FGttTtt208208P.1.91
S1176V1176FGttTtt149149AY.1030.000925
S1176V1176FGttTtt146146B.1.10.002649
S1176V1176delGTT---136136All0.000026
S1176V1176FGttTtt127127B.1.3510.003775
S1176V1176FGttTtt113113AY.250.00068
S1176V1176FGttTtt112112P.1.10.10.910569
S1176V1176VgtTgtC92102All0.000018
S1176V1176VgtTgtG6102All0.000001
S1176V1176VgtTgtA4102All0.000001
S1176V1176FGttTtt100100AY.650.053305
S1176V1176FGttTtt9898P.1.111
S1176V1176FGttTtt9494B.1.1770.001238
S1176V1176FGttTtt8989B.1.2580.005923
S1176V1176FGttTtt7373P.51
S1176V1176FGttTtt6767B.1.1.3780.489051
S1176V1176FGttTtt6161AY.46.60.004405
S1176V1176FGttTtt5959AY.440.000359
S1176V1176IGttAtt5253All0.00001
S1176V1176IGtTAtC153All0
S1176V1176FGttTtt5252AY.260.001472
S1176V1176FGttTtt4848B.1.4290.001129
S1176V1176delGTT---4747B.1.1.70.000042
S1176V1176FGttTtt4444AY.30.000438
S1176V1176FGttTtt4444AY.980.003476
S1176V1176FGttTtt4040AY.4.20.000868
S1176V1176FGttTtt3636AY.1080.039691
S1176V1176FGttTtt3636AY.99.10.055901
S1176V1176FGttTtt3131B.1.1.3320.96875
S1176V1176FGttTtt3131B.1.2210.002202
S1176V1176FGttTtt2929P.1.31
S1176V1176FGttTtt2828B.1.1.3330.03014
S1176V1176FGttTtt2727C.370.003134
S1176V1176FGttTtt2626B.1.6210.002301
S1176V1176FGttTtt2424P.1.10.21
S1176V1176FGttTtt2222AY.1020.000583
S1176V1176VgtTgtC2020AY.1000.00092
S1176V1176FGttTtt1919B.1.360.002772
S1176V1176FGttTtt1818AY.610.001886
S1176V1176FGttTtt1818AY.7.10.002029
S1176V1176FGttTtt1818B.1.177.530.043062
S1176V1176FGttTtt1717AY.1210.0023
S1176V1176FGttTtt1717B.1.1600.00053
S1176V1176FGttTtt1616AY.390.000395
S1176V1176VgtTgtC1515A.20.009927
S1176V1176FGttTtt1515A.2.50.007485
S1176V1176FGttTtt1515AY.420.000603
S1176V1176FGttTtt1515B.1.1.2770.011381
S1176V1176IGttAtt1414AY.40.000022
S1176V1176AgTtgCt1213All0.000002
S1176V1176AgTTgCC113All0
S1176V1176FGttTtt1313AY.200.000505
S1176V1176FGttTtt1313AY.470.000404
S1176V1176FGttTtt1313P.1.51
S1176V1176LGttCtt1212All0.000002
S1176V1176FGttTtt1212AY.1200.000446
S1176V1176FGttTtt1212AY.4.50.00129
S1176V1176FGttTtt1111AY.1000.000506
S1176V1176FGttTtt1111AY.29.10.002426
S1176V1176FGttTtt1111AY.750.000616
S1176V1176VgtTgtC911B.1.1.70.000008
S1176V1176VgtTgtG211B.1.1.70.000002
S1176V1176FGttTtt1111B.1.4660.255814
S1176V1176FGttTtt1010AY.99.20.000922
S1176V1176IGttAtt99AY.1180.000564
S1176V1176FGttTtt99AY.230.000628
S1176V1176FGttTtt99AY.330.000601
S1176V1176FGttTtt99AY.690.00168
S1176V1176FGttTtt99AY.9.20.000331
S1176V1176FGttTtt99B.1.5250.001018
S1176V1176VgtTgtC99R.10.00081
S1176V1176FGttTtt88AY.100.00424
S1176V1176FGttTtt88AY.730.005323
S1176V1176FGttTtt88AY.98.10.000387
S1176V1176FGttTtt88B.1.4700.011236
S1176V1176FGttTtt77A0.002709
S1176V1176delGTT---77AY.1200.00026
S1176V1176FGttTtt77AY.340.000679
S1176V1176delGTT---77B.1.1770.000092
S1176V1176FGttTtt77B.1.3750.005738
S1176V1176GgTtgGt66All0.000001
S1176V1176FGttTtt66AY.1170.000507
S1176V1176FGttTtt66AY.1180.000376
S1176V1176delGTT---66AY.250.000036
S1176V1176IGttAtt66AY.50.000124
S1176V1176FGttTtt66AY.5.30.002024
S1176V1176FGttTtt66AY.780.009245
S1176V1176VgtTgtC56B.10.000046
S1176V1176VgtTgtA16B.10.000009
S1176V1176FGttTtt66B.1.1.2180.046154
S1176V1176FGttTtt66B.1.177.860.001101
S1176V1176FGttTtt66B.1.5260.000141
S1176V1176FGttTtt66B.1.5960.000523
S1176V1176VgtTgtC66B.1.6210.000531
S1176V1176FGttTtt66C.37.10.015707
S1176V1176delGTT---55AY.40.000008
S1176V1176delGTT---55AY.4.50.000537
S1176V1176FGttTtt55AY.7.20.002796
S1176V1176FGttTtt55AY.770.005637
S1176V1176FGttTtt55AY.930.001365
S1176V1176FGttTtt55B.1.1.2610.043103
S1176V1176FGttTtt55B.1.1.330.002104
S1176V1176FGttTtt55B.1.177.790.01171
S1176V1176FGttTtt55B.1.617.10.000645
S1176V1176LGttCtt55B.1.617.20.000019
S1176V1176FGttTtt44AY.1060.00134
S1176V1176FGttTtt44AY.130.000644
S1176V1176delGTT---44AY.430.000018
S1176V1176IGttAtt44AY.660.004278
S1176V1176FGttTtt44AY.75.10.000721
S1176V1176FGttTtt44AY.9.10.000335
S1176V1176delGTT---44B.10.000037
S1176V1176FGttTtt44B.1.1.4640.005891
S1176V1176IGttAtt44B.1.1.70.000004
S1176V1176FGttTtt44B.1.177.440.002076
S1176V1176FGttTtt44B.1.4270.000202
S1176V1176FGttTtt44B.1.5950.001044
S1176V1176delGTT---44B.1.617.20.000015
S1176V1176IGttAtt44B.1.617.20.000015
S1176V1176FGttTtt44D.20.0003
S1176V1176FGttTtt33A.2.40.010101
S1176V1176DgTtgAt33All0.000001
S1176V1176TGTtACt23All0
S1176V1176del2gTTg--23All0
S1176V1176del2GTT--N13All0
S1176V1176TGTTACC13All0
S1176V1176FGttTtt33AY.10.001187
S1176V1176FGttTtt33AY.1110.000549
S1176V1176FGttTtt33AY.270.000194
S1176V1176FGttTtt33AY.290.000047
S1176V1176VgtTgtC23AY.40.000003
S1176V1176VgtTgtA13AY.40.000002
S1176V1176VgtTgtC33AY.430.000013
S1176V1176FGttTtt33AY.450.000365
S1176V1176FGttTtt33AY.46.40.000494
S1176V1176FGttTtt33AY.50.000062
S1176V1176FGttTtt33AY.530.000863
S1176V1176FGttTtt33AY.700.000626
S1176V1176FGttTtt33AY.710.001425
S1176V1176FGttTtt33B0.000383
S1176V1176delGTT---33B.1.10.000054
S1176V1176FGttTtt33B.1.1.4480.006098
S1176V1176FGttTtt33B.1.160.260.007264
S1176V1176FGttTtt33B.1.177.430.004431
S1176V1176AgTtgCt33B.1.20.000026
S1176V1176FGttTtt33B.1.2400.000647
S1176V1176FGttTtt33B.1.36.100.014354
S1176V1176FGttTtt33B.1.36.80.003
S1176V1176FGttTtt33B.1.5640.001278
S1176V1176FGttTtt33B.1.6090.001438
S1176V1176VgtTgtC33B.1.617.20.000011
S1176V1176FGttTtt33B.1.6370.000219
S1176V1176FGttTtt33B.400.001093
S1176V1176delGTT---33P.1.150.000697
S1176V1176AgTTgCC120.055556
S1176V1176IGtTAtC120.055556
S1176V1176TGTtACt120.055556
S1176V1176TGTTACC120.055556
S1176V1176AgTtgCt120.055556
S1176V1176IGttAtt120.055556
S1176V1176del1gtTgt-12All0
S1176V1176del1Gtt-tt12All0
S1176V1176IGttAtt22AY.1050.001286
S1176V1176FGttTtt22AY.1050.001286
S1176V1176FGttTtt22AY.1140.000462
S1176V1176FGttTtt22AY.160.000759
S1176V1176FGttTtt22AY.16.10.00094
S1176V1176delGTT---22AY.190.002281
S1176V1176FGttTtt22AY.20.000712
S1176V1176delGTT---22AY.230.000139
S1176V1176IGttAtt22AY.250.000012
S1176V1176VgtTgtC22AY.260.000057
S1176V1176VgtTgtG22AY.30.00002
S1176V1176IGttAtt22AY.30.00002
S1176V1176FGttTtt22AY.360.000296
S1176V1176LGttCtt22AY.40.000003
S1176V1176FGttTtt22AY.4.2.10.000298
S1176V1176FGttTtt22AY.460.000208
S1176V1176FGttTtt22AY.550.001835
S1176V1176FGttTtt22AY.60.000082
S1176V1176FGttTtt22AY.850.000854
S1176V1176FGttTtt22AY.90.000135
S1176V1176FGttTtt22AY.920.000575
S1176V1176GgTtgGt22B.1.10.000036
S1176V1176FGttTtt22B.1.1.1810.009091
S1176V1176FGttTtt22B.1.1.3720.001377
S1176V1176FGttTtt22B.1.1.3820.071429
S1176V1176FGttTtt22B.1.1.5280.009615
S1176V1176AgTtgCt22B.1.1.70.000002
S1176V1176del2gTTg--22B.1.1.70.000002
S1176V1176FGttTtt22B.1.1.700.000682
S1176V1176FGttTtt22B.1.1390.001466
S1176V1176VgtTgtC22B.1.1770.000026
S1176V1176delGTT---22B.1.177.40.000422
S1176V1176FGttTtt22B.1.177.570.000562
S1176V1176VgtTgtC22B.1.20.000018
S1176V1176del1gtTgt-12B.1.20.000009
S1176V1176del1Gtt-tt12B.1.20.000009
S1176V1176FGttTtt22B.1.2410.001623
S1176V1176FGttTtt22B.1.3110.000549
S1176V1176FGttTtt22B.1.4280.002041
S1176V1176IGttAtt22B.1.4290.000047
S1176V1176VgtTgtC22B.1.5260.000047
S1176V1176FGttTtt22B.1.6000.011696
S1176V1176FGttTtt22B.1.6230.001073
S1176V1176delGTT---22P.10.000032
S1176V1176FGttTtt22Q.10.000253
S1176V1176FGttTtt22Q.20.001227
S1176V1176FGttTtt22Q.30.00029
S1176V1176VgtTgtC110.055556
S1176V1176VgtTgtC11A0.000387
S1176V1176delGTT---11A0.000387
S1176V1176FGttTtt11A.20.000662
S1176V1176FGttTtt11A.2.20.001689
S1176V1176VgtTgtC11A.23.10.000704
S1176V1176FGttTtt11AD.20.000219
S1176V1176KGTTAAA11All0
S1176V1176RGTtCGt11All0
S1176V1176SGTTAGC11All0
S1176V1176YGTtTAt11All0
S1176V1176LGttCtt11AY.1020.000027
S1176V1176VgtTgtC11AY.1020.000027
S1176V1176FGttTtt11AY.1100.000113
S1176V1176delGTT---11AY.1110.000183
S1176V1176FGttTtt11AY.1160.000287
S1176V1176del2GTT--N11AY.1200.000037
S1176V1176AgTtgCt11AY.120.10.000321
S1176V1176FGttTtt11AY.120.10.000321
S1176V1176delGTT---11AY.240.000431
S1176V1176FGttTtt11AY.240.000431
S1176V1176AgTtgCt11AY.250.000006
S1176V1176GgTtgGt11AY.290.000016
S1176V1176FGttTtt11AY.3.10.000085
S1176V1176delGTT---11AY.300.000396
S1176V1176delGTT---11AY.330.000067
S1176V1176delGTT---11AY.350.000233
S1176V1176FGttTtt11AY.39.10.00004
S1176V1176FGttTtt11AY.39.1.10.000725
S1176V1176KGTTAAA11AY.420.00004
S1176V1176IGttAtt11AY.430.000004
S1176V1176VgtTgtC11AY.440.000006
S1176V1176FGttTtt11AY.46.50.000198
S1176V1176delGTT---11AY.50.000021
S1176V1176LGttCtt11AY.5.10.003759
S1176V1176delGTT---11AY.5.30.000337
S1176V1176IGttAtt11AY.540.000095
S1176V1176FGttTtt11AY.540.000095
S1176V1176FGttTtt11AY.580.000907
S1176V1176delGTT---11AY.60.000041
S1176V1176FGttTtt11AY.600.000938
S1176V1176FGttTtt11AY.660.00107
S1176V1176FGttTtt11AY.670.000464
S1176V1176delGTT---11AY.680.000274
S1176V1176FGttTtt11AY.680.000274
S1176V1176delGTT---11AY.70.000196
S1176V1176delGTT---11AY.75.10.00018
S1176V1176FGttTtt11AY.790.001211
S1176V1176delGTT---11AY.810.001992
S1176V1176FGttTtt11AY.820.001357
S1176V1176FGttTtt11AY.840.000437
S1176V1176RGTtCGt11AY.850.000427
S1176V1176FGttTtt11AY.860.00083
S1176V1176FGttTtt11AY.870.000833
S1176V1176delGTT---11AY.90.000068
S1176V1176delGTT---11AY.9.20.000037
S1176V1176FGttTtt11AY.900.000684
S1176V1176FGttTtt11AY.940.000443
S1176V1176FGttTtt11AY.950.000761
S1176V1176AgTtgCt11AY.960.002075
S1176V1176VgtTgtC11AY.98.10.000048
S1176V1176SGTTAGC11B0.000128
S1176V1176DgTtgAt11B.10.000009
S1176V1176AgTtgCt11B.10.000009
S1176V1176VgtTgtC11B.1.10.000018
S1176V1176AgTtgCt11B.1.1.10.000327
S1176V1176delGTT---11B.1.1.1130.006993
S1176V1176FGttTtt11B.1.1.1280.007092
S1176V1176delGTT---11B.1.1.1390.022727
S1176V1176delGTT---11B.1.1.1590.004673
S1176V1176FGttTtt11B.1.1.1840.058824
S1176V1176FGttTtt11B.1.1.2220.000204
S1176V1176delGTT---11B.1.1.2360.006897
S1176V1176FGttTtt11B.1.1.2360.006897
S1176V1176FGttTtt11B.1.1.2890.002083
S1176V1176FGttTtt11B.1.1.3060.000438
S1176V1176GgTtgGt11B.1.1.3260.001761
S1176V1176FGttTtt11B.1.1.370.000193
S1176V1176FGttTtt11B.1.1.4090.002833
S1176V1176VgtTgtC11B.1.1.5190.00004
S1176V1176FGttTtt11B.1.1.5230.001563
S1176V1176GgTtgGt11B.1.1.70.000001
S1176V1176FGttTtt11B.1.1.980.018519
S1176V1176FGttTtt11B.1.110.30.000718
S1176V1176FGttTtt11B.1.1400.018868
S1176V1176VgtTgtA11B.1.1600.000031
S1176V1176AgTtgCt11B.1.160.140.002119
S1176V1176FGttTtt11B.1.160.150.00495
S1176V1176delGTT---11B.1.160.230.004831
S1176V1176FGttTtt11B.1.160.300.002976
S1176V1176FGttTtt11B.1.177.110.001698
S1176V1176LGttCtt11B.1.177.150.000631
S1176V1176FGttTtt11B.1.177.160.000664
S1176V1176delGTT---11B.1.177.170.000821
S1176V1176FGttTtt11B.1.177.170.000821
S1176V1176delGTT---11B.1.177.210.000076
S1176V1176FGttTtt11B.1.177.330.001645
S1176V1176FGttTtt11B.1.177.450.000381
S1176V1176delGTT---11B.1.177.540.000606
S1176V1176FGttTtt11B.1.177.560.000668
S1176V1176FGttTtt11B.1.177.60.000977
S1176V1176FGttTtt11B.1.177.70.000165
S1176V1176delGTT---11B.1.177.830.001481
S1176V1176delGTT---11B.1.177.90.001332
S1176V1176FGttTtt11B.1.2100.002132
S1176V1176FGttTtt11B.1.2140.003663
S1176V1176FGttTtt11B.1.214.20.0006
S1176V1176delGTT---11B.1.2180.005155
S1176V1176delGTT---11B.1.221.10.002907
S1176V1176FGttTtt11B.1.2340.000132
S1176V1176LGttCtt11B.1.2430.00007
S1176V1176VgtTgtC11B.1.2580.000067
S1176V1176FGttTtt11B.1.258.140.00098
S1176V1176FGttTtt11B.1.258.30.001675
S1176V1176FGttTtt11B.1.2980.002114
S1176V1176FGttTtt11B.1.3410.022727
S1176V1176FGttTtt11B.1.3490.000715
S1176V1176VgtTgtA11B.1.36.10.00114
S1176V1176FGttTtt11B.1.36.220.001208
S1176V1176VgtTgtC11B.1.36.220.001208
S1176V1176delGTT---11B.1.36.290.000517
S1176V1176FGttTtt11B.1.36.310.001751
S1176V1176FGttTtt11B.1.370.014706
S1176V1176FGttTtt11B.1.3800.006623
S1176V1176FGttTtt11B.1.3960.000706
S1176V1176FGttTtt11B.1.4070.035714
S1176V1176FGttTtt11B.1.4110.003704
S1176V1176FGttTtt11B.1.4150.014286
S1176V1176VgtTgtC11B.1.4290.000024
S1176V1176FGttTtt11B.1.4360.001029
S1176V1176FGttTtt11B.1.4480.002625
S1176V1176FGttTtt11B.1.4680.005714
S1176V1176FGttTtt11B.1.5240.001406
S1176V1176FGttTtt11B.1.5450.014493
S1176V1176FGttTtt11B.1.5510.00129
S1176V1176FGttTtt11B.1.5610.000397
S1176V1176FGttTtt11B.1.5750.000303
S1176V1176FGttTtt11B.1.5760.000907
S1176V1176FGttTtt11B.1.5770.000687
S1176V1176FGttTtt11B.1.5820.000491
S1176V1176FGttTtt11B.1.596.10.009346
S1176V1176VgtTgtG11B.1.6090.000479
S1176V1176DgTtgAt11B.1.617.20.000004
S1176V1176delGTT---11B.1.6210.000089
S1176V1176TGTtACt11B.1.6210.000089
S1176V1176FGttTtt11B.1.6270.00202
S1176V1176FGttTtt11B.1.6340.003425
S1176V1176FGttTtt11B.1.6380.052632
S1176V1176FGttTtt11B.1.780.008547
S1176V1176VgtTgtC11B.1.940.027027
S1176V1176VgtTgtG11B.60.00091
S1176V1176DgTtgAt11C.170.055556
S1176V1176FGttTtt11C.180.002591
S1176V1176FGttTtt11C.360.000911
S1176V1176delGTT---11C.370.000116
S1176V1176FGttTtt11C.390.018868
S1176V1176GgTtgGt11N.60.007092
S1176V1176LGttCtt11P.10.000016
S1176V1176delGTT---11P.1.10.000318
S1176V1176YGTtTAt11P.1.10.000318
S1176V1176delGTT---11Q.20.000613
S1176V1176delGTT---11U.30.003861