CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1174 & Codon = gcG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1174A1174AsyngcTgcG7481160.1550825082-25084

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1174A1174AgcTgcG116748All0.000022
S1174A1174AgcTgcG3843AY.40.000059
S1174A1174AgcTgcG3032AY.230.002092
S1174A1174AgcTgcG732B.1.4270.000353
S1174A1174AgcTgcG129P.10.000016
S1174A1174AgcTgcG326B.1.1.70.000003
S1174A1174AgcTgcG211AY.99.20.000184
S1174A1174AgcTgcG411B.1.10.000073
S1174A1174AgcTgcG610AY.440.000037
S1174A1174AgcTgcG110B.1.617.20.000004
S1174A1174AgcTgcG18AY.30.00001
S1174A1174AgcTgcG55AY.46.20.003177
S1174A1174AgcTgcG14B.10.000009
S1174A1174AgcTgcG120.055556
S1174A1174AgcTgcG22AY.10.000791
S1174A1174AgcTgcG22AY.340.000194
S1174A1174AgcTgcG22AY.9.20.000073
S1174A1174AgcTgcG22B.1.1.2220.000408
S1174A1174AgcTgcG22B.1.438.10.000215
S1174A1174AgcTgcG11AY.390.000025
S1174A1174AgcTgcG11B.1.1.4090.002833
S1174A1174AgcTgcG11B.1.1.520.012195
S1174A1174AgcTgcG11B.1.3510.00003
S1174A1174AgcTgcG11B.1.3550.011111
S1174A1174AgcTgcG11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.