CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1174

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1174A1174VnonsyngCtgTt9929890.99697625082-25084
S1174A1174VnonsyngCTgTC99220.0020161325082-25084
S1174A1174VnonsyngCTgTG99210.0010080625082-25084
S1174A1174AsyngcTgcC7486230.83288825082-25084
S1174A1174AsyngcTgcG7481160.1550825082-25084
S1174A1174AsyngcTgcA74890.012032125082-25084
S1174A1174SnonsynGctTct233233125082-25084
S1174A1174deldelGCT---138138125082-25084
S1174A1174TnonsynGctAct20180.925082-25084
S1174A1174TnonsynGcTAcC2010.0525082-25084
S1174A1174TnonsynGcTAcG2010.0525082-25084
S1174A1174PnonsynGctCct530.625082-25084
S1174A1174PnonsynGcTCcG510.225082-25084
S1174A1174PnonsynGcTCcC510.225082-25084
S1174A1174del2delGCt--t430.7525082-25084
S1174A1174del2delgCTg--410.2525082-25084
S1174A1174DnonsyngCtgAt320.66666725082-25084
S1174A1174del1delgcTgc-310.33333325082-25084
S1174A1174del1delGct-ct310.33333325082-25084
S1174A1174LnonsynGCTCTC310.33333325082-25084
S1174A1174LnonsynGCTCTG310.33333325082-25084
S1174A1174DnonsyngCTgAC310.33333325082-25084
S1174A1174del1delGCT-GC310.33333325082-25084
S1174A1174LnonsynGCtCTt310.33333325082-25084
S1174A1174EnonsyngCTgAG11125082-25084
S1174A1174KnonsynGCTAAG11125082-25084
S1174A1174NnonsynGCTAAC11125082-25084
S1174A1174GnonsyngCtgGt11125082-25084

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1174A1174VgCtgTt989992All0.000189
S1174A1174VgCTgTC2992All0
S1174A1174VgCTgTG1992All0
S1174A1174AgcTgcC623748All0.000119
S1174A1174AgcTgcG116748All0.000022
S1174A1174AgcTgcA9748All0.000002
S1174A1174VgCtgTt253253B.1.1.70.000226
S1174A1174VgCtgTt252252B.1.1770.003318
S1174A1174SGctTct233233All0.000045
S1174A1174AgcTgcC222222B.1.6180.895161
S1174A1174delGCT---138138All0.000026
S1174A1174AgcTgcC134134AY.260.003794
S1174A1174VgCtgTt6969AY.340.006691
S1174A1174delGCT---5858B.1.1.70.000052
S1174A1174AgcTgcG3843AY.40.000059
S1174A1174AgcTgcC543AY.40.000008
S1174A1174VgCtgTt4040P.10.00063
S1174A1174SGctTct3939B.1.1.70.000035
S1174A1174VgCtgTt3333AY.440.000201
S1174A1174AgcTgcG3032AY.230.002092
S1174A1174AgcTgcC232AY.230.000139
S1174A1174SGctTct3232AY.40.00005
S1174A1174VgCtgTt3232B.1.2430.002227
S1174A1174AgcTgcC2532B.1.4270.001262
S1174A1174AgcTgcG732B.1.4270.000353
S1174A1174VgCtgTt3030AY.1030.000186
S1174A1174AgcTgcC2829P.10.000441
S1174A1174AgcTgcG129P.10.000016
S1174A1174AgcTgcC2326B.1.1.70.000021
S1174A1174AgcTgcG326B.1.1.70.000003
S1174A1174VgCtgTt2525B.1.20.00022
S1174A1174AgcTgcC2222AY.80.013333
S1174A1174VgCtgTt2121AY.40.000033
S1174A1174TGctAct1820All0.000003
S1174A1174TGcTAcG120All0
S1174A1174TGcTAcC120All0
S1174A1174VgCtgTt2020AY.250.00012
S1174A1174AgcTgcC1919B.1.4290.000447
S1174A1174SGctTct1818AY.1030.000112
S1174A1174AgcTgcC1515B.1.1.3170.006175
S1174A1174VgCtgTt1414AY.200.000544
S1174A1174SGctTct1313AY.46.60.000939
S1174A1174SGctTct1212B.1.617.20.000045
S1174A1174VgCtgTt1212B.1.617.20.000045
S1174A1174VgCtgTt1111AY.470.000342
S1174A1174AgcTgcC911AY.99.20.000829
S1174A1174AgcTgcG211AY.99.20.000184
S1174A1174VgCtgTt1111B.10.000101
S1174A1174AgcTgcC711B.1.10.000127
S1174A1174AgcTgcG411B.1.10.000073
S1174A1174AgcTgcG610AY.440.000037
S1174A1174AgcTgcC410AY.440.000024
S1174A1174AgcTgcC910B.1.617.20.000034
S1174A1174AgcTgcG110B.1.617.20.000004
S1174A1174SGctTct1010P.10.000158
S1174A1174SGctTct99AY.250.000054
S1174A1174VgCtgTt99AY.430.00004
S1174A1174delGCT---88AY.1200.000297
S1174A1174AgcTgcC58AY.30.00005
S1174A1174AgcTgcA28AY.30.00002
S1174A1174AgcTgcG18AY.30.00001
S1174A1174AgcTgcC88P.1.140.000382
S1174A1174VgCtgTt77A.220.466667
S1174A1174SGctTct77AZ.30.010638
S1174A1174delGCT---77B.1.1770.000092
S1174A1174SGctTct77P.1.150.001626
S1174A1174SGctTct66AY.1080.006615
S1174A1174AgcTgcC66AY.250.000036
S1174A1174SGctTct66AY.420.000241
S1174A1174TGctAct66AY.98.10.000291
S1174A1174AgcTgcC66B.1.20.000053
S1174A1174SGctTct66P.20.00112
S1174A1174AgcTgcC66Q.10.000758
S1174A1174PGctCct35All0.000001
S1174A1174PGcTCcC15All0
S1174A1174PGcTCcG15All0
S1174A1174AgcTgcC55AY.1030.000031
S1174A1174VgCtgTt55AY.30.00005
S1174A1174delGCT---55AY.40.000008
S1174A1174delGCT---55AY.4.50.000537
S1174A1174VgCtgTt55AY.420.000201
S1174A1174AgcTgcC55AY.430.000022
S1174A1174AgcTgcG55AY.46.20.003177
S1174A1174AgcTgcC55AY.550.004587
S1174A1174AgcTgcC55AY.620.002179
S1174A1174VgCtgTt55AY.690.000933
S1174A1174VgCtgTt45B0.000511
S1174A1174VgCTgTC15B0.000128
S1174A1174VgCtgTt55B.1.10.000091
S1174A1174VgCtgTt55B.1.1.2840.000537
S1174A1174VgCtgTt55B.1.2340.00066
S1174A1174AgcTgcC55B.1.5960.000436
S1174A1174SGctTct55B.1.6370.000365
S1174A1174del2GCt--t34All0.000001
S1174A1174del2gCTg--14All0
S1174A1174VgCtgTt44AY.120.20.005141
S1174A1174SGctTct44AY.430.000018
S1174A1174SGctTct44B.10.000037
S1174A1174delGCT---44B.10.000037
S1174A1174AgcTgcC34B.10.000027
S1174A1174AgcTgcG14B.10.000009
S1174A1174VgCtgTt44B.1.2580.000266
S1174A1174VgCtgTt44B.1.4290.000094
S1174A1174VgCtgTt44B.1.5170.001708
S1174A1174VgCtgTt44B.1.617.10.000516
S1174A1174TGctAct24B.1.617.20.000008
S1174A1174TGcTAcG14B.1.617.20.000004
S1174A1174TGcTAcC14B.1.617.20.000004
S1174A1174VgCtgTt44P.1.120.001936
S1174A1174LGCtCTt130.055556
S1174A1174LGCTCTG130.055556
S1174A1174PGcTCcC130.055556
S1174A1174LGCTCTC130.055556
S1174A1174PGctCct130.055556
S1174A1174VgCTgTC130.055556
S1174A1174VgCtgTt130.055556
S1174A1174VgCTgTG130.055556
S1174A1174PGcTCcG130.055556
S1174A1174DgCtgAt23All0
S1174A1174del1gcTgc-13All0
S1174A1174del1Gct-ct13All0
S1174A1174del1GCT-GC13All0
S1174A1174DgCTgAC13All0
S1174A1174LGCTCTC13All0
S1174A1174LGCTCTG13All0
S1174A1174LGCtCTt13All0
S1174A1174SGctTct33AY.1000.000138
S1174A1174VgCtgTt33AY.1020.00008
S1174A1174VgCtgTt33AY.1180.000188
S1174A1174delGCT---33AY.430.000013
S1174A1174VgCtgTt33AY.50.000062
S1174A1174VgCtgTt33AY.99.20.000276
S1174A1174SGctTct33B.1.10.000054
S1174A1174AgcTgcC33B.1.1.280.000934
S1174A1174VgCtgTt33B.1.1.5190.000119
S1174A1174SGctTct33B.1.177.170.002463
S1174A1174VgCtgTt33B.1.177.810.000568
S1174A1174VgCtgTt33B.1.1990.012397
S1174A1174SGctTct33B.1.20.000026
S1174A1174SGctTct33B.1.4090.002344
S1174A1174SGctTct33B.1.4290.000071
S1174A1174VgCtgTt33B.1.5960.000261
S1174A1174delGCT---33B.1.617.20.000011
S1174A1174delGCT---33P.1.150.000697
S1174A1174AgcTgcC120.055556
S1174A1174AgcTgcG120.055556
S1174A1174AgcTgcG22AY.10.000791
S1174A1174VgCtgTt22AY.1200.000074
S1174A1174delGCT---22AY.190.002281
S1174A1174SGctTct22AY.200.000078
S1174A1174delGCT---22AY.230.000139
S1174A1174SGctTct22AY.260.000057
S1174A1174VgCtgTt22AY.290.000032
S1174A1174SGctTct22AY.30.00002
S1174A1174VgCtgTt22AY.330.000134
S1174A1174AgcTgcG22AY.340.000194
S1174A1174VgCtgTt22AY.390.000049
S1174A1174SGctTct22AY.4.20.000043
S1174A1174VgCtgTt22AY.4.2.10.000298
S1174A1174SGctTct22AY.440.000012
S1174A1174TGctAct22AY.470.000062
S1174A1174AgcTgcA22AY.50.000041
S1174A1174AgcTgcA12AY.610.000105
S1174A1174AgcTgcC12AY.610.000105
S1174A1174VgCtgTt22AY.680.000547
S1174A1174VgCtgTt22AY.9.10.000167
S1174A1174AgcTgcG22AY.9.20.000073
S1174A1174delGCT---22B.1.10.000036
S1174A1174AgcTgcG22B.1.1.2220.000408
S1174A1174VgCtgTt22B.1.1.370.000386
S1174A1174SGctTct22B.1.1.3820.071429
S1174A1174del2GCt--t22B.1.1.70.000002
S1174A1174AgcTgcC22B.1.1770.000026
S1174A1174delGCT---22B.1.177.40.000422
S1174A1174SGctTct22B.1.177.450.000762
S1174A1174AgcTgcC12B.1.2430.00007
S1174A1174AgcTgcA12B.1.2430.00007
S1174A1174AgcTgcG22B.1.438.10.000215
S1174A1174AgcTgcC22B.1.6200.001892
S1174A1174delGCT---22P.10.000032
S1174A1174VgCtgTt22P.1.150.000465
S1174A1174AgcTgcC22P.30.00319
S1174A1174VgCtgTt22Q.30.00029
S1174A1174VgCtgTt22Q.80.00033
S1174A1174VgCtgTt11A0.000387
S1174A1174AgcTgcC11A.10.000282
S1174A1174VgCtgTt11A.2.40.003367
S1174A1174AgcTgcC11A.270.001656
S1174A1174AgcTgcC11A.30.002096
S1174A1174EgCTgAG11All0
S1174A1174NGCTAAC11All0
S1174A1174GgCtgGt11All0
S1174A1174KGCTAAG11All0
S1174A1174VgCtgTt11AY.10.000396
S1174A1174AgcTgcC11AY.1020.000027
S1174A1174TGctAct11AY.1020.000027
S1174A1174AgcTgcC11AY.1070.000466
S1174A1174delGCT---11AY.1110.000183
S1174A1174AgcTgcC11AY.1140.000231
S1174A1174delGCT---11AY.1180.000063
S1174A1174VgCtgTt11AY.1190.000035
S1174A1174AgcTgcC11AY.1190.000035
S1174A1174SGctTct11AY.1190.000035
S1174A1174del2gCTg--11AY.1200.000037
S1174A1174VgCtgTt11AY.1210.000135
S1174A1174VgCtgTt11AY.160.00038
S1174A1174SGctTct11AY.16.10.00047
S1174A1174PGctCct11AY.190.00114
S1174A1174VgCtgTt11AY.230.00007
S1174A1174delGCT---11AY.240.000431
S1174A1174delGCT---11AY.250.000006
S1174A1174TGctAct11AY.260.000028
S1174A1174VgCtgTt11AY.260.000028
S1174A1174SGctTct11AY.290.000016
S1174A1174SGctTct11AY.29.10.000221
S1174A1174TGctAct11AY.3.10.000085
S1174A1174delGCT---11AY.300.000396
S1174A1174SGctTct11AY.330.000067
S1174A1174VgCtgTt11AY.34.10.00051
S1174A1174delGCT---11AY.350.000233
S1174A1174VgCtgTt11AY.360.000148
S1174A1174AgcTgcG11AY.390.000025
S1174A1174AgcTgcC11AY.39.10.00004
S1174A1174VgCtgTt11AY.39.10.00004
S1174A1174TGctAct11AY.40.000002
S1174A1174VgCtgTt11AY.4.20.000022
S1174A1174VgCtgTt11AY.4.50.000107
S1174A1174TGctAct11AY.420.00004
S1174A1174VgCtgTt11AY.460.000104
S1174A1174VgCtgTt11AY.46.40.000165
S1174A1174VgCtgTt11AY.46.60.000072
S1174A1174AgcTgcA11AY.470.000031
S1174A1174SGctTct11AY.470.000031
S1174A1174delGCT---11AY.50.000021
S1174A1174AgcTgcC11AY.540.000095
S1174A1174delGCT---11AY.60.000041
S1174A1174SGctTct11AY.60.000041
S1174A1174del2GCt--t11AY.600.000938
S1174A1174VgCtgTt11AY.610.000105
S1174A1174AgcTgcC11AY.640.000595
S1174A1174VgCtgTt11AY.670.000464
S1174A1174delGCT---11AY.680.000274
S1174A1174delGCT---11AY.70.000196
S1174A1174VgCtgTt11AY.75.10.00018
S1174A1174delGCT---11AY.75.10.00018
S1174A1174delGCT---11AY.810.001992
S1174A1174delGCT---11AY.850.000427
S1174A1174AgcTgcC11AY.850.000427
S1174A1174VgCtgTt11AY.880.000884
S1174A1174AgcTgcC11AY.90.000068
S1174A1174delGCT---11AY.90.000068
S1174A1174SGctTct11AY.9.20.000037
S1174A1174delGCT---11AY.9.20.000037
S1174A1174VgCtgTt11AY.9.20.000037
S1174A1174SGctTct11AY.980.000079
S1174A1174VgCtgTt11AY.98.10.000048
S1174A1174TGctAct11B.10.000009
S1174A1174del1GCT-GC11B.10.000009
S1174A1174delGCT---11B.1.1.1390.022727
S1174A1174delGCT---11B.1.1.1590.004673
S1174A1174VgCtgTt11B.1.1.2050.003717
S1174A1174VgCtgTt11B.1.1.2140.000055
S1174A1174delGCT---11B.1.1.2360.006897
S1174A1174VgCtgTt11B.1.1.250.000569
S1174A1174SGctTct11B.1.1.280.000311
S1174A1174VgCtgTt11B.1.1.3060.000438
S1174A1174del1gcTgc-11B.1.1.3060.000438
S1174A1174AgcTgcC11B.1.1.3180.000302
S1174A1174DgCtgAt11B.1.1.3350.012987
S1174A1174SGctTct11B.1.1.3480.000796
S1174A1174AgcTgcC11B.1.1.3820.035714
S1174A1174VgCtgTt11B.1.1.3970.002252
S1174A1174AgcTgcG11B.1.1.4090.002833
S1174A1174VgCtgTt11B.1.1.4320.001266
S1174A1174AgcTgcC11B.1.1.5190.00004
S1174A1174AgcTgcG11B.1.1.520.012195
S1174A1174TGctAct11B.1.1.70.000001
S1174A1174DgCtgAt11B.1.1.70.000001
S1174A1174GgCtgGt11B.1.1.70.000001
S1174A1174VgCtgTt11B.1.1470.000756
S1174A1174SGctTct11B.1.1600.000031
S1174A1174VgCtgTt11B.1.1600.000031
S1174A1174AgcTgcC11B.1.1600.000031
S1174A1174del1Gct-ct11B.1.1600.000031
S1174A1174delGCT---11B.1.160.230.004831
S1174A1174delGCT---11B.1.177.170.000821
S1174A1174delGCT---11B.1.177.210.000076
S1174A1174delGCT---11B.1.177.540.000606
S1174A1174delGCT---11B.1.177.600.000218
S1174A1174AgcTgcC11B.1.177.730.000566
S1174A1174SGctTct11B.1.177.810.000189
S1174A1174delGCT---11B.1.177.830.001481
S1174A1174AgcTgcC11B.1.177.860.000183
S1174A1174delGCT---11B.1.177.90.001332
S1174A1174delGCT---11B.1.2180.005155
S1174A1174SGctTct11B.1.2210.000071
S1174A1174AgcTgcA11B.1.2210.000071
S1174A1174delGCT---11B.1.221.10.002907
S1174A1174AgcTgcC11B.1.2400.000216
S1174A1174SGctTct11B.1.2580.000067
S1174A1174VgCtgTt11B.1.258.170.000104
S1174A1174AgcTgcC11B.1.3110.000275
S1174A1174VgCtgTt11B.1.3510.00003
S1174A1174AgcTgcG11B.1.3510.00003
S1174A1174AgcTgcG11B.1.3550.011111
S1174A1174SGctTct11B.1.36.290.000517
S1174A1174VgCtgTt11B.1.36.290.000517
S1174A1174delGCT---11B.1.36.290.000517
S1174A1174AgcTgcC11B.1.36.360.000602
S1174A1174VgCtgTt11B.1.3670.000792
S1174A1174AgcTgcC11B.1.3910.001127
S1174A1174SGctTct11B.1.4030.003268
S1174A1174SGctTct11B.1.4040.001302
S1174A1174VgCtgTt11B.1.438.10.000107
S1174A1174AgcTgcA11B.1.4590.004082
S1174A1174SGctTct11B.1.466.20.000391
S1174A1174VgCtgTt11B.1.5160.001957
S1174A1174AgcTgcC11B.1.5380.008065
S1174A1174VgCtgTt11B.1.5600.00463
S1174A1174SGctTct11B.1.564.10.001577
S1174A1174PGctCct11B.1.5650.00081
S1174A1174TGctAct11B.1.6090.000479
S1174A1174EgCTgAG11B.1.617.20.000004
S1174A1174KGCTAAG11B.1.617.20.000004
S1174A1174NGCTAAC11B.1.617.20.000004
S1174A1174DgCTgAC11B.1.617.20.000004
S1174A1174AgcTgcC11B.1.6190.000871
S1174A1174AgcTgcC11B.1.6210.000089
S1174A1174delGCT---11B.1.6210.000089
S1174A1174VgCtgTt11B.1.6210.000089
S1174A1174AgcTgcC11B.1.6230.000536
S1174A1174VgCtgTt11B.1.6300.005236
S1174A1174VgCtgTt11C.110.010638
S1174A1174AgcTgcC11C.170.055556
S1174A1174VgCtgTt11C.180.002591
S1174A1174SGctTct11C.370.000116
S1174A1174VgCtgTt11C.370.000116
S1174A1174delGCT---11C.370.000116
S1174A1174SGctTct11D.20.000075
S1174A1174VgCtgTt11N.50.001767
S1174A1174AgcTgcC11P.1.120.000484
S1174A1174VgCtgTt11P.1.140.000048
S1174A1174SGctTct11P.1.140.000048
S1174A1174VgCtgTt11P.1.170.000162
S1174A1174AgcTgcG11P.20.000187
S1174A1174delGCT---11Q.20.000613
S1174A1174delGCT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.