CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1173 & Codon = Gat

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1173N1173DnonsynAatGat6868125079-25081

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1173N1173DAatGat6868All0.000013
S1173N1173DAatGat1616AY.440.000097
S1173N1173DAatGat1111B.1.177.210.000841
S1173N1173DAatGat99AY.40.000014
S1173N1173DAatGat77AY.250.000042
S1173N1173DAatGat55AY.30.00005
S1173N1173DAatGat44AY.1030.000025
S1173N1173DAatGat22B.1.617.20.000008
S1173N1173DAatGat11AY.200.000039
S1173N1173DAatGat11AY.260.000028
S1173N1173DAatGat11AY.430.000004
S1173N1173DAatGat11AY.460.000104
S1173N1173DAatGat11AY.46.10.001027
S1173N1173DAatGat11AY.50.000021
S1173N1173DAatGat11AY.540.000095
S1173N1173DAatGat11AY.9.20.000037
S1173N1173DAatGat11AY.98.10.000048
S1173N1173DAatGat11B.10.000009
S1173N1173DAatGat11B.1.1.330.000421
S1173N1173DAatGat11B.1.1770.000013
S1173N1173DAatGat11B.1.177.280.007407
S1173N1173DAatGat11B.1.20.000009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.