CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 1167 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1167G1167VnonsyngGtgTt11607116040.99974225061-25063

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1167G1167VgGtgTt1160411607All0.002219
S1167G1167VgGtgTt29362936AY.410.863022
S1167G1167VgGtgTt27012701B.1.617.20.01017
S1167G1167VgGtgTt17131713B.1.1770.022556
S1167G1167VgGtgTt13151315AY.1030.008165
S1167G1167VgGtgTt584584B.1.177.110.991511
S1167G1167VgGtgTt429429B.1.2430.029852
S1167G1167VgGtgTt361361AY.420.014523
S1167G1167VgGtgTt352352AY.430.00156
S1167G1167VgGtgTt134134B.1.1.70.00012
S1167G1167VgGtgTt9090AY.350.020974
S1167G1167VgGtgTt7373B.10.000669
S1167G1167VgGtgTt6262AY.1020.001644
S1167G1167VgGtgTt5252AY.30.000517
S1167G1167VgGtgTt4141AY.40.000064
S1167G1167VgGtgTt3636AY.440.000219
S1167G1167VgGtgTt3535AY.980.002765
S1167G1167VgGtgTt3434B.1.4000.014586
S1167G1167VgGtgTt3333AY.250.000198
S1167G1167VgGtgTt3131P.10.000488
S1167G1167VgGtgTt2929B.1.20.000255
S1167G1167VgGtgTt2525AY.46.60.001805
S1167G1167VgGtgTt2323AY.3.10.001961
S1167G1167VgGtgTt2222B.1.1.2980.018966
S1167G1167VgGtgTt1717B.1.3510.000505
S1167G1167VgGtgTt1616AY.98.10.000775
S1167G1167VgGtgTt1515AY.330.001002
S1167G1167VgGtgTt1515AY.390.000371
S1167G1167VgGtgTt1515AY.470.000467
S1167G1167VgGtgTt1515P.1.70.004789
S1167G1167VgGtgTt1313AY.1190.000459
S1167G1167VgGtgTt1313AY.450.001582
S1167G1167VgGtgTt1212AY.540.001144
S1167G1167VgGtgTt1010AY.1110.001832
S1167G1167VgGtgTt1010AY.320.005325
S1167G1167VgGtgTt1010AY.9.20.000367
S1167G1167VgGtgTt99B.1.1.2140.000499
S1167G1167VgGtgTt99B.1.177.210.000688
S1167G1167VgGtgTt99B.1.617.10.001161
S1167G1167VgGtgTt88AY.1080.00882
S1167G1167VgGtgTt88AY.16.10.003759
S1167G1167VgGtgTt88AY.240.003448
S1167G1167VgGtgTt88AY.50.000165
S1167G1167VgGtgTt88AY.60.000329
S1167G1167VgGtgTt88AY.770.009019
S1167G1167VgGtgTt88B.1.10.000145
S1167G1167VgGtgTt88P.1.140.000382
S1167G1167VgGtgTt77AY.160.002658
S1167G1167VgGtgTt77AY.4.20.000152
S1167G1167VgGtgTt77B.1.5260.000165
S1167G1167VgGtgTt66AY.1210.000812
S1167G1167VgGtgTt66AY.4.30.005051
S1167G1167VgGtgTt66AY.99.20.000553
S1167G1167VgGtgTt55AY.1180.000313
S1167G1167VgGtgTt45AY.260.000113
S1167G1167VgGtgTt55AY.4.2.10.000745
S1167G1167VgGtgTt55B.1.1.3170.002058
S1167G1167VgGtgTt55B.1.1.5190.000199
S1167G1167VgGtgTt44AY.200.000155
S1167G1167VgGtgTt44AY.220.008368
S1167G1167VgGtgTt44AY.230.000279
S1167G1167VgGtgTt44AY.290.000063
S1167G1167VgGtgTt44AY.4.50.00043
S1167G1167VgGtgTt44AY.46.40.000658
S1167G1167VgGtgTt44AY.920.001149
S1167G1167VgGtgTt44B.1.1.750.042553
S1167G1167VgGtgTt44B.1.2790.002054
S1167G1167VgGtgTt44B.1.438.10.000429
S1167G1167VgGtgTt33AY.1160.00086
S1167G1167VgGtgTt33AY.360.000445
S1167G1167VgGtgTt33AY.460.000312
S1167G1167VgGtgTt33AY.46.30.002801
S1167G1167VgGtgTt33AY.480.001395
S1167G1167VgGtgTt33AY.5.30.001012
S1167G1167VgGtgTt33AY.590.001589
S1167G1167VgGtgTt33AY.660.003209
S1167G1167VgGtgTt33AY.840.001312
S1167G1167VgGtgTt33B.1.4290.000071
S1167G1167VgGtgTt120.055556
S1167G1167VgGtgTt22AY.1060.00067
S1167G1167VgGtgTt22AY.1130.000285
S1167G1167VgGtgTt22AY.140.000176
S1167G1167VgGtgTt22AY.270.000129
S1167G1167VgGtgTt22AY.550.001835
S1167G1167VgGtgTt22AY.880.001768
S1167G1167VgGtgTt22AY.9.10.000167
S1167G1167VgGtgTt22AZ.20.001642
S1167G1167VgGtgTt22B.1.1.250.001137
S1167G1167VgGtgTt22B.1.1.4170.005405
S1167G1167VgGtgTt22B.1.2400.000431
S1167G1167VgGtgTt22B.1.4270.000101
S1167G1167VgGtgTt22B.1.466.20.000782
S1167G1167VgGtgTt22B.1.5250.000226
S1167G1167VgGtgTt12B.1.5760.000907
S1167G1167VgGtgTt22B.1.5950.000522
S1167G1167VgGtgTt22C.360.001821
S1167G1167VgGtgTt22D.20.00015
S1167G1167VgGtgTt22Q.40.00091
S1167G1167VgGtgTt11AV.10.005051
S1167G1167VgGtgTt11AY.10.000396
S1167G1167VgGtgTt11AY.1000.000046
S1167G1167VgGtgTt11AY.1050.000643
S1167G1167VgGtgTt11AY.1170.000085
S1167G1167VgGtgTt11AY.1200.000037
S1167G1167VgGtgTt11AY.120.10.000321
S1167G1167VgGtgTt11AY.130.000161
S1167G1167VgGtgTt11AY.170.008197
S1167G1167VgGtgTt11AY.190.00114
S1167G1167VgGtgTt11AY.34.10.00051
S1167G1167VgGtgTt11AY.46.20.000635
S1167G1167VgGtgTt11AY.570.000656
S1167G1167VgGtgTt11AY.580.000907
S1167G1167VgGtgTt11AY.610.000105
S1167G1167VgGtgTt11AY.620.000436
S1167G1167VgGtgTt11AY.650.000533
S1167G1167VgGtgTt11AY.680.000274
S1167G1167VgGtgTt11AY.7.10.000113
S1167G1167VgGtgTt11AY.750.000056
S1167G1167VgGtgTt11AY.820.001357
S1167G1167VgGtgTt11AY.870.000833
S1167G1167VgGtgTt11AY.9.2.10.001976
S1167G1167VgGtgTt11AY.910.00073
S1167G1167VgGtgTt11AY.930.000273
S1167G1167VgGtgTt11AY.970.001701
S1167G1167VgGtgTt11AY.99.10.001553
S1167G1167VgGtgTt11B.1.1.2160.00089
S1167G1167VgGtgTt11B.1.1.280.000311
S1167G1167VgGtgTt11B.1.1.330.000421
S1167G1167VgGtgTt11B.1.1.3480.000796
S1167G1167VgGtgTt11B.1.1.450.014085
S1167G1167VgGtgTt11B.1.1.4640.001473
S1167G1167VgGtgTt11B.1.1.4840.1
S1167G1167VgGtgTt11B.1.1110.001175
S1167G1167VgGtgTt11B.1.1570.002985
S1167G1167VgGtgTt11B.1.177.350.000691
S1167G1167VgGtgTt11B.1.177.440.000519
S1167G1167VgGtgTt11B.1.177.560.000668
S1167G1167VgGtgTt11B.1.177.670.007634
S1167G1167VgGtgTt11B.1.1890.004292
S1167G1167VgGtgTt11B.1.2150.009615
S1167G1167VgGtgTt11B.1.2210.000071
S1167G1167VgGtgTt11B.1.2340.000132
S1167G1167VgGtgTt11B.1.2410.000812
S1167G1167VgGtgTt11B.1.258.220.002667
S1167G1167VgGtgTt11B.1.2730.012987
S1167G1167VgGtgTt11B.1.36.170.000494
S1167G1167VgGtgTt11B.1.36.180.00042
S1167G1167VgGtgTt11B.1.36.20.010753
S1167G1167VgGtgTt11B.1.4010.008197
S1167G1167VgGtgTt11B.1.4080.00369
S1167G1167VgGtgTt11B.1.4260.001009
S1167G1167VgGtgTt11B.1.4700.001404
S1167G1167VgGtgTt11B.1.5580.004566
S1167G1167VgGtgTt11B.1.5770.000687
S1167G1167VgGtgTt11B.1.5960.000087
S1167G1167VgGtgTt11B.1.6000.005848
S1167G1167VgGtgTt11B.1.617.30.002985
S1167G1167VgGtgTt11B.260.014706
S1167G1167VgGtgTt11B.600.015873
S1167G1167VgGtgTt11C.170.055556
S1167G1167VgGtgTt11C.36.30.000567
S1167G1167VgGtgTt11C.370.000116
S1167G1167VgGtgTt11P.1.120.000484
S1167G1167VgGtgTt11P.1.150.000232
S1167G1167VgGtgTt11P.1.170.000162
S1167G1167VgGtgTt11P.1.20.001156
S1167G1167VgGtgTt11P.1.80.004785
S1167G1167VgGtgTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.